Correlation between gene mutation status and molecular subtypes
Skin Cutaneous Melanoma (Metastatic)
02 April 2015  |  analyses__2015_04_02
Maintainer Information
Citation Information
doi:10.7908/C1154G46
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1154G46
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 255 genes and 10 molecular subtypes across 290 patients, 8 significant findings detected with P value < 0.05 and Q value < 0.25.

  • NRAS mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • BRAF mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SF3B1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SCN10A mutation correlated to 'METHLYATION_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 255 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 8 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 145 (50%) 145 3e-05
(0.0765) 		0.0142
(0.799) 		0.426
(1.00) 		0.507
(1.00) 		0.00544
(0.555) 		7e-05
(0.0892) 		0.00065
(0.207) 		0.176
(1.00) 		0.00023
(0.159) 		0.0791
(1.00)
NRAS 87 (30%) 203 0.00025
(0.159) 		0.0161
(0.799) 		0.552
(1.00) 		0.265
(1.00) 		0.733
(1.00) 		0.644
(1.00) 		0.647
(1.00) 		0.55
(1.00) 		0.00039
(0.166) 		0.23
(1.00)
SF3B1 15 (5%) 275 0.291
(1.00) 		0.307
(1.00) 		0.0318
(0.943) 		0.456
(1.00) 		0.0417
(0.953) 		0.0115
(0.776) 		0.0237
(0.915) 		0.138
(1.00) 		0.00596
(0.558) 		0.00055
(0.2)
SCN10A 67 (23%) 223 0.687
(1.00) 		0.00033
(0.166) 		0.721
(1.00) 		0.807
(1.00) 		0.658
(1.00) 		0.543
(1.00) 		0.436
(1.00) 		0.905
(1.00) 		0.261
(1.00) 		0.856
(1.00)
CDKN2A 41 (14%) 249 0.102
(1.00) 		0.0595
(1.00) 		0.0109
(0.771) 		0.894
(1.00) 		0.954
(1.00) 		0.836
(1.00) 		0.776
(1.00) 		0.382
(1.00) 		0.718
(1.00) 		0.585
(1.00)
TP53 48 (17%) 242 0.673
(1.00) 		0.00543
(0.555) 		0.164
(1.00) 		0.302
(1.00) 		0.148
(1.00) 		0.653
(1.00) 		0.483
(1.00) 		0.741
(1.00) 		0.42
(1.00) 		0.539
(1.00)
PTEN 25 (9%) 265 0.109
(1.00) 		0.183
(1.00) 		0.0198
(0.856) 		0.0747
(1.00) 		0.126
(1.00) 		0.19
(1.00) 		0.0934
(1.00) 		0.056
(1.00) 		0.034
(0.943) 		0.242
(1.00)
NF1 38 (13%) 252 0.212
(1.00) 		0.434
(1.00) 		0.527
(1.00) 		0.548
(1.00) 		0.742
(1.00) 		0.221
(1.00) 		0.428
(1.00) 		0.719
(1.00) 		0.072
(1.00) 		0.245
(1.00)
RAC1 20 (7%) 270 0.101
(1.00) 		0.195
(1.00) 		0.637
(1.00) 		0.437
(1.00) 		0.807
(1.00) 		0.665
(1.00) 		0.338
(1.00) 		0.293
(1.00) 		0.952
(1.00) 		0.557
(1.00)
ARID2 37 (13%) 253 0.882
(1.00) 		0.0242
(0.923) 		0.702
(1.00) 		0.748
(1.00) 		1
(1.00) 		0.489
(1.00) 		0.256
(1.00) 		0.11
(1.00) 		0.973
(1.00) 		0.161
(1.00)
PPP6C 20 (7%) 270 0.957
(1.00) 		0.565
(1.00) 		0.498
(1.00) 		0.298
(1.00) 		0.843
(1.00) 		0.0977
(1.00) 		0.358
(1.00) 		0.0554
(1.00) 		0.756
(1.00) 		0.256
(1.00)
MAP2K1 15 (5%) 275 0.23
(1.00) 		0.00411
(0.555) 		0.198
(1.00) 		0.0295
(0.943) 		0.124
(1.00) 		0.0902
(1.00) 		0.33
(1.00) 		0.835
(1.00) 		0.0788
(1.00) 		0.152
(1.00)
COL3A1 59 (20%) 231 0.41
(1.00) 		1
(1.00) 		0.949
(1.00) 		0.128
(1.00) 		0.407
(1.00) 		0.484
(1.00) 		0.806
(1.00) 		0.44
(1.00) 		0.944
(1.00) 		0.629
(1.00)
ZFX 15 (5%) 275 0.712
(1.00) 		0.798
(1.00) 		0.508
(1.00) 		1
(1.00) 		0.076
(1.00) 		0.497
(1.00) 		0.36
(1.00) 		0.493
(1.00) 		0.0877
(1.00) 		0.0401
(0.953)
HSD11B1 14 (5%) 276 0.477
(1.00) 		0.211
(1.00) 		0.685
(1.00) 		0.166
(1.00) 		0.216
(1.00) 		0.464
(1.00) 		0.586
(1.00) 		1
(1.00) 		0.933
(1.00) 		0.756
(1.00)
IL5RA 17 (6%) 273 0.703
(1.00) 		0.814
(1.00) 		0.381
(1.00) 		0.277
(1.00) 		0.279
(1.00) 		0.355
(1.00) 		0.762
(1.00) 		0.839
(1.00) 		0.298
(1.00) 		0.368
(1.00)
FAM58A 6 (2%) 284 0.172
(1.00) 		0.578
(1.00) 		0.91
(1.00) 		0.831
(1.00) 		0.0819
(1.00) 		0.394
(1.00) 		0.573
(1.00) 		0.0076
(0.618) 		0.00822
(0.635) 		0.377
(1.00)
IDH1 15 (5%) 275 0.711
(1.00) 		0.107
(1.00) 		0.767
(1.00) 		0.284
(1.00) 		0.5
(1.00) 		0.639
(1.00) 		0.0227
(0.903) 		0.58
(1.00) 		0.181
(1.00) 		0.0589
(1.00)
DMC1 11 (4%) 279 0.462
(1.00) 		0.427
(1.00) 		0.137
(1.00) 		0.303
(1.00) 		0.013
(0.799) 		0.275
(1.00) 		0.0162
(0.799) 		0.872
(1.00) 		0.00757
(0.618) 		0.00107
(0.303)
CYP3A5 13 (4%) 277 0.877
(1.00) 		0.285
(1.00) 		0.189
(1.00) 		0.131
(1.00) 		0.404
(1.00) 		0.612
(1.00) 		0.721
(1.00) 		0.709
(1.00) 		0.592
(1.00) 		0.813
(1.00)
SLC38A4 33 (11%) 257 0.0833
(1.00) 		0.157
(1.00) 		0.548
(1.00) 		0.797
(1.00) 		0.00462
(0.555) 		0.0816
(1.00) 		0.993
(1.00) 		0.769
(1.00) 		0.462
(1.00) 		0.289
(1.00)
DDX3X 20 (7%) 270 0.226
(1.00) 		1
(1.00) 		0.589
(1.00) 		0.179
(1.00) 		0.623
(1.00) 		0.505
(1.00) 		0.92
(1.00) 		0.283
(1.00) 		0.759
(1.00) 		0.69
(1.00)
DSG3 48 (17%) 242 0.619
(1.00) 		0.938
(1.00) 		0.0674
(1.00) 		0.761
(1.00) 		0.922
(1.00) 		0.981
(1.00) 		0.619
(1.00) 		0.777
(1.00) 		0.106
(1.00) 		0.592
(1.00)
S100A8 8 (3%) 282 0.356
(1.00) 		0.739
(1.00) 		0.0646
(1.00) 		0.035
(0.945) 		0.745
(1.00) 		0.735
(1.00) 		0.966
(1.00) 		0.51
(1.00) 		0.447
(1.00) 		0.573
(1.00)
RPGRIP1 27 (9%) 263 0.255
(1.00) 		0.487
(1.00) 		0.326
(1.00) 		0.45
(1.00) 		0.366
(1.00) 		0.0821
(1.00) 		0.507
(1.00) 		0.198
(1.00) 		0.0365
(0.949) 		0.0225
(0.903)
OXA1L 8 (3%) 282 0.611
(1.00) 		0.542
(1.00) 		1
(1.00) 		0.548
(1.00) 		0.439
(1.00) 		0.804
(1.00) 		0.581
(1.00) 		0.375
(1.00) 		0.11
(1.00) 		0.214
(1.00)
NBPF1 26 (9%) 264 0.614
(1.00) 		0.208
(1.00) 		0.0272
(0.942) 		0.676
(1.00) 		0.248
(1.00) 		0.453
(1.00) 		0.573
(1.00) 		0.589
(1.00) 		0.142
(1.00) 		0.715
(1.00)
PDE1A 40 (14%) 250 0.618
(1.00) 		0.712
(1.00) 		0.711
(1.00) 		0.633
(1.00) 		0.0272
(0.942) 		0.0608
(1.00) 		0.811
(1.00) 		0.11
(1.00) 		0.841
(1.00) 		0.63
(1.00)
GML 11 (4%) 279 0.0254
(0.927) 		0.796
(1.00) 		0.942
(1.00) 		0.221
(1.00) 		0.687
(1.00) 		0.625
(1.00) 		0.416
(1.00) 		0.681
(1.00) 		0.426
(1.00) 		0.338
(1.00)
RQCD1 9 (3%) 281 0.203
(1.00) 		0.178
(1.00) 		0.0772
(1.00) 		0.928
(1.00) 		0.531
(1.00) 		1
(1.00) 		0.581
(1.00) 		0.673
(1.00) 		0.0511
(1.00) 		0.895
(1.00)
TRERF1 26 (9%) 264 0.0333
(0.943) 		0.445
(1.00) 		0.175
(1.00) 		0.836
(1.00) 		0.163
(1.00) 		0.0945
(1.00) 		0.514
(1.00) 		0.631
(1.00) 		0.0659
(1.00) 		0.511
(1.00)
C1QTNF9 16 (6%) 274 0.557
(1.00) 		0.726
(1.00) 		0.646
(1.00) 		0.837
(1.00) 		1
(1.00) 		0.358
(1.00) 		0.369
(1.00) 		0.255
(1.00) 		0.844
(1.00) 		0.402
(1.00)
KRTAP5-10 10 (3%) 280 0.3
(1.00) 		0.655
(1.00) 		0.929
(1.00) 		0.187
(1.00) 		0.566
(1.00) 		0.523
(1.00) 		0.253
(1.00) 		0.0335
(0.943) 		0.604
(1.00) 		0.647
(1.00)
KEL 36 (12%) 254 0.0162
(0.799) 		0.313
(1.00) 		0.768
(1.00) 		0.671
(1.00) 		0.00289
(0.522) 		0.0718
(1.00) 		0.273
(1.00) 		0.488
(1.00) 		0.459
(1.00) 		0.128
(1.00)
GAGE2D 4 (1%) 286 0.838
(1.00) 		0.685
(1.00) 		1
(1.00) 		0.608
(1.00) 		0.711
(1.00) 		0.277
(1.00) 		0.565
(1.00) 		0.441
(1.00)
PARM1 19 (7%) 271 0.69
(1.00) 		1
(1.00) 		0.378
(1.00) 		0.33
(1.00) 		0.914
(1.00) 		0.121
(1.00) 		0.476
(1.00) 		0.323
(1.00) 		0.825
(1.00) 		0.288
(1.00)
KYNU 16 (6%) 274 0.81
(1.00) 		0.948
(1.00) 		0.824
(1.00) 		0.883
(1.00) 		0.401
(1.00) 		0.167
(1.00) 		0.551
(1.00) 		0.894
(1.00) 		0.532
(1.00) 		0.679
(1.00)
PTGIS 16 (6%) 274 0.9
(1.00) 		0.169
(1.00) 		0.452
(1.00) 		0.534
(1.00) 		0.135
(1.00) 		0.433
(1.00) 		0.302
(1.00) 		0.482
(1.00) 		0.491
(1.00) 		0.225
(1.00)
KIAA1257 13 (4%) 277 0.217
(1.00) 		0.484
(1.00) 		0.835
(1.00) 		0.941
(1.00) 		0.825
(1.00) 		0.62
(1.00) 		0.476
(1.00) 		0.471
(1.00) 		0.721
(1.00) 		0.146
(1.00)
CCK 6 (2%) 284 0.4
(1.00) 		0.578
(1.00) 		0.303
(1.00) 		0.014
(0.799) 		0.451
(1.00) 		0.848
(1.00) 		0.729
(1.00) 		1
(1.00) 		1
(1.00) 		0.698
(1.00)
ZNF780B 10 (3%) 280 0.0742
(1.00) 		0.56
(1.00) 		0.336
(1.00) 		0.513
(1.00) 		0.615
(1.00) 		0.633
(1.00) 		0.613
(1.00) 		0.892
(1.00) 		0.836
(1.00) 		1
(1.00)
RICTOR 12 (4%) 278 0.156
(1.00) 		0.709
(1.00) 		0.795
(1.00) 		0.603
(1.00) 		0.709
(1.00) 		0.88
(1.00) 		0.701
(1.00) 		0.62
(1.00) 		0.423
(1.00) 		0.811
(1.00)
STK19 14 (5%) 276 0.738
(1.00) 		0.0393
(0.953) 		0.142
(1.00) 		0.847
(1.00) 		0.941
(1.00) 		0.462
(1.00) 		0.274
(1.00) 		0.471
(1.00) 		0.635
(1.00) 		0.343
(1.00)
ALPK2 47 (16%) 243 0.373
(1.00) 		0.429
(1.00) 		0.293
(1.00) 		0.966
(1.00) 		0.384
(1.00) 		0.989
(1.00) 		0.864
(1.00) 		0.483
(1.00) 		0.699
(1.00) 		0.837
(1.00)
PKDREJ 30 (10%) 260 0.97
(1.00) 		0.539
(1.00) 		0.921
(1.00) 		0.946
(1.00) 		0.323
(1.00) 		0.797
(1.00) 		0.291
(1.00) 		0.819
(1.00) 		0.142
(1.00) 		0.913
(1.00)
MMP1 14 (5%) 276 0.235
(1.00) 		0.157
(1.00) 		0.759
(1.00) 		0.867
(1.00) 		0.743
(1.00) 		0.681
(1.00) 		0.464
(1.00) 		0.048
(0.997) 		1
(1.00) 		0.453
(1.00)
SLC27A5 10 (3%) 280 0.437
(1.00) 		0.211
(1.00) 		0.438
(1.00) 		0.695
(1.00) 		0.718
(1.00) 		0.825
(1.00) 		0.0268
(0.942) 		0.506
(1.00) 		0.232
(1.00) 		0.225
(1.00)
NGF 9 (3%) 281 0.102
(1.00) 		0.835
(1.00) 		0.0973
(1.00) 		1
(1.00) 		0.696
(1.00) 		0.701
(1.00) 		0.906
(1.00) 		0.915
(1.00) 		0.101
(1.00) 		0.575
(1.00)
ATP5F1 6 (2%) 284 0.664
(1.00) 		0.339
(1.00) 		0.0854
(1.00) 		0.758
(1.00) 		0.519
(1.00) 		0.705
(1.00) 		0.908
(1.00) 		0.667
(1.00) 		0.516
(1.00) 		0.842
(1.00)
POTEG 27 (9%) 263 0.032
(0.943) 		0.0389
(0.953) 		0.144
(1.00) 		0.829
(1.00) 		0.205
(1.00) 		0.404
(1.00) 		0.078
(1.00) 		0.441
(1.00) 		0.479
(1.00) 		0.826
(1.00)
XIRP2 98 (34%) 192 0.0838
(1.00) 		0.312
(1.00) 		0.112
(1.00) 		0.693
(1.00) 		0.241
(1.00) 		0.107
(1.00) 		0.773
(1.00) 		0.83
(1.00) 		0.728
(1.00) 		0.695
(1.00)
USH2A 91 (31%) 199 0.279
(1.00) 		0.504
(1.00) 		0.0731
(1.00) 		0.83
(1.00) 		0.308
(1.00) 		0.849
(1.00) 		0.343
(1.00) 		0.322
(1.00) 		0.184
(1.00) 		0.267
(1.00)
THSD7B 92 (32%) 198 0.0914
(1.00) 		0.21
(1.00) 		0.43
(1.00) 		0.599
(1.00) 		0.553
(1.00) 		0.13
(1.00) 		0.322
(1.00) 		0.616
(1.00) 		0.204
(1.00) 		0.911
(1.00)
SAG 11 (4%) 279 0.346
(1.00) 		0.684
(1.00) 		0.531
(1.00) 		0.168
(1.00) 		0.637
(1.00) 		0.615
(1.00) 		0.595
(1.00) 		0.183
(1.00) 		0.857
(1.00) 		0.302
(1.00)
ZNF597 10 (3%) 280 0.477
(1.00) 		0.0971
(1.00) 		0.801
(1.00) 		0.396
(1.00) 		0.849
(1.00) 		0.127
(1.00) 		0.777
(1.00) 		0.722
(1.00) 		0.51
(1.00) 		0.895
(1.00)
PLCXD2 12 (4%) 278 1
(1.00) 		0.46
(1.00) 		0.348
(1.00) 		0.918
(1.00) 		0.579
(1.00) 		0.768
(1.00) 		0.965
(1.00) 		0.821
(1.00) 		0.53
(1.00) 		1
(1.00)
MPP7 32 (11%) 258 0.31
(1.00) 		0.0599
(1.00) 		0.399
(1.00) 		0.25
(1.00) 		0.149
(1.00) 		0.212
(1.00) 		0.993
(1.00) 		0.992
(1.00) 		0.88
(1.00) 		0.746
(1.00)
MMP27 13 (4%) 277 0.521
(1.00) 		0.818
(1.00) 		0.327
(1.00) 		1
(1.00) 		1
(1.00) 		0.979
(1.00) 		0.642
(1.00) 		0.789
(1.00) 		0.64
(1.00) 		0.676
(1.00)
CHRNA3 14 (5%) 276 0.328
(1.00) 		0.616
(1.00) 		0.184
(1.00) 		0.626
(1.00) 		0.649
(1.00) 		0.74
(1.00) 		0.674
(1.00) 		0.68
(1.00) 		0.653
(1.00) 		0.83
(1.00)
CD300E 12 (4%) 278 0.456
(1.00) 		0.816
(1.00) 		0.769
(1.00) 		0.74
(1.00) 		0.348
(1.00) 		0.361
(1.00) 		0.979
(1.00) 		0.47
(1.00) 		0.456
(1.00) 		0.388
(1.00)
IFNGR2 4 (1%) 286 1
(1.00) 		0.462
(1.00) 		0.603
(1.00) 		0.0694
(1.00) 		0.465
(1.00) 		0.252
(1.00) 		0.846
(1.00) 		0.138
(1.00) 		0.827
(1.00) 		1
(1.00)
MYPOP 7 (2%) 283 0.0843
(1.00) 		0.438
(1.00) 		0.912
(1.00) 		0.43
(1.00) 		0.896
(1.00) 		0.816
(1.00) 		0.624
(1.00) 		0.225
(1.00) 		0.158
(1.00) 		0.529
(1.00)
KHDC1 11 (4%) 279 0.432
(1.00) 		1
(1.00) 		0.929
(1.00) 		0.929
(1.00) 		0.407
(1.00) 		0.909
(1.00) 		0.726
(1.00) 		0.198
(1.00) 		0.356
(1.00) 		0.268
(1.00)
RB1 9 (3%) 281 0.104
(1.00) 		0.118
(1.00) 		1
(1.00) 		0.937
(1.00) 		0.53
(1.00) 		0.575
(1.00) 		0.333
(1.00) 		0.00223
(0.437) 		0.835
(1.00) 		0.0616
(1.00)
GLRB 30 (10%) 260 0.592
(1.00) 		0.449
(1.00) 		0.646
(1.00) 		0.166
(1.00) 		0.161
(1.00) 		0.295
(1.00) 		0.662
(1.00) 		0.0903
(1.00) 		0.602
(1.00) 		0.228
(1.00)
CASP8 9 (3%) 281 0.483
(1.00) 		0.432
(1.00) 		0.451
(1.00) 		0.734
(1.00) 		0.0931
(1.00) 		0.968
(1.00) 		0.688
(1.00) 		0.673
(1.00) 		0.0591
(1.00) 		0.896
(1.00)
RNMT 6 (2%) 284 0.666
(1.00) 		0.771
(1.00) 		0.757
(1.00) 		0.0614
(1.00) 		1
(1.00) 		0.948
(1.00) 		0.907
(1.00) 		0.67
(1.00) 		0.581
(1.00) 		1
(1.00)
ACSBG1 13 (4%) 277 0.232
(1.00) 		0.554
(1.00) 		0.827
(1.00) 		0.154
(1.00) 		0.43
(1.00) 		0.418
(1.00) 		0.969
(1.00) 		0.316
(1.00) 		0.871
(1.00) 		0.346
(1.00)
GZMA 11 (4%) 279 0.926
(1.00) 		0.263
(1.00) 		0.725
(1.00) 		0.843
(1.00) 		0.926
(1.00) 		0.907
(1.00) 		0.351
(1.00) 		1
(1.00) 		0.0925
(1.00) 		0.742
(1.00)
AK7 19 (7%) 271 0.721
(1.00) 		0.658
(1.00) 		0.615
(1.00) 		0.773
(1.00) 		0.914
(1.00) 		0.879
(1.00) 		0.0391
(0.953) 		0.0401
(0.953) 		0.307
(1.00) 		0.222
(1.00)
ASNSD1 8 (3%) 282 0.00675
(0.594) 		0.484
(1.00) 		0.684
(1.00) 		0.0505
(1.00) 		0.441
(1.00) 		0.552
(1.00) 		0.965
(1.00) 		0.959
(1.00) 		0.347
(1.00) 		1
(1.00)
IL31RA 20 (7%) 270 0.916
(1.00) 		0.839
(1.00) 		0.547
(1.00) 		0.812
(1.00) 		0.572
(1.00) 		0.477
(1.00) 		0.977
(1.00) 		0.406
(1.00) 		0.863
(1.00) 		0.883
(1.00)
ACMSD 12 (4%) 278 1
(1.00) 		0.931
(1.00) 		0.739
(1.00) 		0.958
(1.00) 		0.871
(1.00) 		0.753
(1.00) 		0.862
(1.00) 		0.974
(1.00) 		1
(1.00) 		0.905
(1.00)
C6ORF165 19 (7%) 271 0.955
(1.00) 		0.913
(1.00) 		0.271
(1.00) 		0.234
(1.00) 		0.437
(1.00) 		0.9
(1.00) 		0.801
(1.00) 		0.0464
(0.997) 		0.412
(1.00) 		0.375
(1.00)
CTNNB1 16 (6%) 274 0.851
(1.00) 		0.612
(1.00) 		0.281
(1.00) 		0.661
(1.00) 		0.231
(1.00) 		0.387
(1.00) 		0.842
(1.00) 		0.751
(1.00) 		0.783
(1.00) 		0.667
(1.00)
MME 21 (7%) 269 0.776
(1.00) 		0.92
(1.00) 		0.247
(1.00) 		0.74
(1.00) 		0.688
(1.00) 		0.144
(1.00) 		0.224
(1.00) 		0.705
(1.00) 		0.915
(1.00) 		0.408
(1.00)
ZMYND8 17 (6%) 273 0.271
(1.00) 		0.485
(1.00) 		0.431
(1.00) 		0.948
(1.00) 		0.608
(1.00) 		0.159
(1.00) 		0.878
(1.00) 		0.341
(1.00) 		0.374
(1.00) 		0.286
(1.00)
GCOM1 24 (8%) 266 0.689
(1.00) 		0.963
(1.00) 		0.513
(1.00) 		0.729
(1.00) 		0.017
(0.805) 		0.703
(1.00) 		0.222
(1.00) 		0.376
(1.00) 		0.318
(1.00) 		0.618
(1.00)
HTR2C 21 (7%) 269 0.779
(1.00) 		0.0515
(1.00) 		0.243
(1.00) 		0.0309
(0.943) 		0.0556
(1.00) 		0.371
(1.00) 		0.525
(1.00) 		0.466
(1.00) 		0.217
(1.00) 		0.817
(1.00)
INPP5D 26 (9%) 264 0.0932
(1.00) 		0.706
(1.00) 		0.352
(1.00) 		0.548
(1.00) 		0.839
(1.00) 		0.992
(1.00) 		0.859
(1.00) 		0.527
(1.00) 		0.407
(1.00) 		0.949
(1.00)
MAP3K5 20 (7%) 270 0.137
(1.00) 		0.346
(1.00) 		0.239
(1.00) 		0.588
(1.00) 		0.0104
(0.758) 		0.721
(1.00) 		0.365
(1.00) 		0.528
(1.00) 		0.724
(1.00) 		0.573
(1.00)
ITGB3 20 (7%) 270 0.393
(1.00) 		0.212
(1.00) 		0.273
(1.00) 		0.901
(1.00) 		0.598
(1.00) 		0.765
(1.00) 		0.281
(1.00) 		0.525
(1.00) 		0.558
(1.00) 		0.939
(1.00)
HEPACAM2 15 (5%) 275 0.355
(1.00) 		0.273
(1.00) 		0.553
(1.00) 		0.349
(1.00) 		0.678
(1.00) 		0.784
(1.00) 		0.5
(1.00) 		0.241
(1.00) 		0.318
(1.00) 		0.551
(1.00)
NMS 13 (4%) 277 1
(1.00) 		0.195
(1.00) 		0.313
(1.00) 		0.911
(1.00) 		0.0139
(0.799) 		0.235
(1.00) 		0.942
(1.00) 		0.978
(1.00) 		0.343
(1.00) 		0.837
(1.00)
CD86 21 (7%) 269 0.231
(1.00) 		0.169
(1.00) 		0.278
(1.00) 		0.356
(1.00) 		0.348
(1.00) 		0.24
(1.00) 		0.892
(1.00) 		0.623
(1.00) 		0.957
(1.00) 		0.707
(1.00)
BTK 15 (5%) 275 0.0895
(1.00) 		0.182
(1.00) 		0.379
(1.00) 		0.452
(1.00) 		0.00415
(0.555) 		0.327
(1.00) 		0.861
(1.00) 		0.361
(1.00) 		0.424
(1.00) 		0.921
(1.00)
PDK4 7 (2%) 283 1
(1.00) 		0.271
(1.00) 		0.0202
(0.858) 		0.111
(1.00) 		0.631
(1.00) 		0.285
(1.00) 		0.64
(1.00) 		0.225
(1.00) 		1
(1.00) 		0.474
(1.00)
MAN1A1 15 (5%) 275 0.499
(1.00) 		0.423
(1.00) 		0.45
(1.00) 		0.138
(1.00) 		0.158
(1.00) 		0.49
(1.00) 		0.249
(1.00) 		0.102
(1.00) 		0.151
(1.00) 		0.665
(1.00)
CSN3 4 (1%) 286 0.0647
(1.00) 		0.241
(1.00) 		0.39
(1.00) 		0.593
(1.00) 		0.841
(1.00) 		0.479
(1.00) 		0.923
(1.00) 		0.749
(1.00) 		1
(1.00) 		0.156
(1.00)
ZNF589 3 (1%) 287 1
(1.00) 		0.785
(1.00) 		0.52
(1.00) 		0.209
(1.00) 		0.645
(1.00) 		0.737
(1.00) 		0.37
(1.00) 		0.34
(1.00)
THEMIS 34 (12%) 256 0.0355
(0.945) 		0.0485
(0.997) 		0.55
(1.00) 		0.619
(1.00) 		0.535
(1.00) 		0.397
(1.00) 		0.188
(1.00) 		0.268
(1.00) 		0.572
(1.00) 		0.408
(1.00)
TCHHL1 38 (13%) 252 0.0932
(1.00) 		0.532
(1.00) 		0.0657
(1.00) 		0.095
(1.00) 		0.208
(1.00) 		0.0771
(1.00) 		0.915
(1.00) 		0.905
(1.00) 		0.5
(1.00) 		0.533
(1.00)
ELOVL3 5 (2%) 285 0.263
(1.00) 		0.855
(1.00) 		0.523
(1.00) 		0.449
(1.00) 		0.273
(1.00) 		0.36
(1.00) 		0.512
(1.00) 		0.595
(1.00) 		1
(1.00) 		0.402
(1.00)
ACO1 8 (3%) 282 0.0742
(1.00) 		0.815
(1.00) 		0.0344
(0.943) 		0.832
(1.00) 		0.743
(1.00) 		0.759
(1.00) 		0.0132
(0.799) 		0.242
(1.00) 		0.582
(1.00) 		0.842
(1.00)
RPL5 7 (2%) 283 0.0534
(1.00) 		0.495
(1.00) 		0.402
(1.00) 		0.542
(1.00) 		0.0526
(1.00) 		0.172
(1.00) 		0.514
(1.00) 		0.191
(1.00)
USP9X 17 (6%) 273 0.51
(1.00) 		0.631
(1.00) 		0.412
(1.00) 		0.0887
(1.00) 		0.863
(1.00) 		0.908
(1.00) 		0.195
(1.00) 		0.403
(1.00) 		0.146
(1.00) 		0.415
(1.00)
COL4A3 37 (13%) 253 0.901
(1.00) 		0.858
(1.00) 		0.845
(1.00) 		0.528
(1.00) 		0.975
(1.00) 		0.31
(1.00) 		0.262
(1.00) 		0.508
(1.00) 		0.665
(1.00) 		0.725
(1.00)
UBE2V2 3 (1%) 287 0.782
(1.00) 		1
(1.00) 		0.205
(1.00) 		0.712
(1.00) 		1
(1.00) 		0.286
(1.00) 		0.19
(1.00) 		1
(1.00)
CCDC38 13 (4%) 277 0.937
(1.00) 		1
(1.00) 		1
(1.00) 		0.968
(1.00) 		1
(1.00) 		0.734
(1.00) 		0.955
(1.00) 		0.625
(1.00) 		0.26
(1.00) 		0.601
(1.00)
C10ORF118 7 (2%) 283 0.704
(1.00) 		0.706
(1.00) 		0.757
(1.00) 		0.586
(1.00) 		0.632
(1.00) 		0.0844
(1.00) 		1
(1.00) 		0.867
(1.00) 		0.564
(1.00) 		0.528
(1.00)
POLR2B 10 (3%) 280 0.85
(1.00) 		0.0423
(0.955) 		0.067
(1.00) 		0.136
(1.00) 		0.72
(1.00) 		0.646
(1.00) 		0.543
(1.00) 		0.351
(1.00) 		0.393
(1.00) 		0.791
(1.00)
DGKI 33 (11%) 257 0.45
(1.00) 		0.0474
(0.997) 		0.796
(1.00) 		0.523
(1.00) 		0.217
(1.00) 		0.611
(1.00) 		0.448
(1.00) 		0.521
(1.00) 		0.16
(1.00) 		0.453
(1.00)
SNRK 10 (3%) 280 0.124
(1.00) 		0.471
(1.00) 		0.824
(1.00) 		0.315
(1.00) 		0.567
(1.00) 		0.569
(1.00) 		0.37
(1.00) 		1
(1.00) 		0.72
(1.00) 		0.811
(1.00)
PTPRT 86 (30%) 204 0.679
(1.00) 		0.0479
(0.997) 		0.247
(1.00) 		0.92
(1.00) 		0.761
(1.00) 		0.873
(1.00) 		0.45
(1.00) 		0.313
(1.00) 		0.0793
(1.00) 		0.0474
(0.997)
MYH1 69 (24%) 221 0.167
(1.00) 		0.0328
(0.943) 		0.395
(1.00) 		0.376
(1.00) 		0.256
(1.00) 		0.512
(1.00) 		0.936
(1.00) 		0.877
(1.00) 		0.237
(1.00) 		0.568
(1.00)
ZNF595 8 (3%) 282 0.751
(1.00) 		0.163
(1.00) 		0.448
(1.00) 		0.549
(1.00) 		0.402
(1.00) 		0.317
(1.00) 		0.53
(1.00) 		0.391
(1.00) 		0.199
(1.00) 		0.775
(1.00)
OR51S1 30 (10%) 260 0.805
(1.00) 		0.781
(1.00) 		0.802
(1.00) 		0.259
(1.00) 		0.467
(1.00) 		0.529
(1.00) 		0.265
(1.00) 		0.797
(1.00) 		0.1
(1.00) 		0.267
(1.00)
CABP7 5 (2%) 285 0.312
(1.00) 		0.741
(1.00) 		0.531
(1.00) 		0.193
(1.00) 		0.0845
(1.00) 		0.117
(1.00) 		0.833
(1.00) 		0.00776
(0.618) 		0.149
(1.00) 		0.522
(1.00)
DSP 60 (21%) 230 0.084
(1.00) 		0.513
(1.00) 		0.141
(1.00) 		0.893
(1.00) 		0.232
(1.00) 		0.775
(1.00) 		0.681
(1.00) 		0.612
(1.00) 		0.659
(1.00) 		0.186
(1.00)
AMPD3 22 (8%) 268 0.346
(1.00) 		0.103
(1.00) 		0.136
(1.00) 		0.445
(1.00) 		0.467
(1.00) 		0.463
(1.00) 		0.782
(1.00) 		0.656
(1.00) 		0.835
(1.00) 		0.554
(1.00)
NUDT4 5 (2%) 285 0.854
(1.00) 		0.378
(1.00) 		0.393
(1.00) 		0.273
(1.00) 		0.538
(1.00) 		0.768
(1.00) 		0.239
(1.00) 		0.139
(1.00) 		0.738
(1.00) 		0.298
(1.00)
UPB1 13 (4%) 277 0.366
(1.00) 		0.102
(1.00) 		0.344
(1.00) 		0.174
(1.00) 		0.0907
(1.00) 		0.4
(1.00) 		0.814
(1.00) 		0.839
(1.00) 		0.494
(1.00) 		0.578
(1.00)
CEBPZ 3 (1%) 287 1
(1.00) 		0.788
(1.00) 		0.517
(1.00) 		0.869
(1.00) 		1
(1.00) 		0.868
(1.00) 		0.629
(1.00) 		1
(1.00)
PTPRF 27 (9%) 263 0.0624
(1.00) 		0.0158
(0.799) 		0.244
(1.00) 		0.933
(1.00) 		0.417
(1.00) 		0.526
(1.00) 		0.445
(1.00) 		0.801
(1.00) 		0.839
(1.00) 		0.631
(1.00)
GTPBP4 8 (3%) 282 0.821
(1.00) 		0.606
(1.00) 		0.679
(1.00) 		0.194
(1.00) 		0.292
(1.00) 		0.326
(1.00) 		0.714
(1.00) 		1
(1.00) 		0.221
(1.00) 		0.667
(1.00)
DDX4 13 (4%) 277 0.265
(1.00) 		1
(1.00) 		0.529
(1.00) 		0.0627
(1.00) 		0.351
(1.00) 		0.237
(1.00) 		0.451
(1.00) 		0.788
(1.00) 		0.0969
(1.00) 		0.835
(1.00)
UGT1A3 14 (5%) 276 0.327
(1.00) 		0.209
(1.00) 		0.461
(1.00) 		0.407
(1.00) 		0.151
(1.00) 		0.549
(1.00) 		0.805
(1.00) 		0.873
(1.00) 		0.459
(1.00) 		0.306
(1.00)
MIOX 6 (2%) 284 0.454
(1.00) 		0.338
(1.00) 		0.773
(1.00) 		0.772
(1.00) 		0.681
(1.00) 		0.263
(1.00) 		1
(1.00) 		1
(1.00) 		0.738
(1.00) 		0.646
(1.00)
PEX6 6 (2%) 284 0.454
(1.00) 		1
(1.00) 		0.694
(1.00) 		0.633
(1.00) 		0.167
(1.00) 		0.448
(1.00) 		0.363
(1.00) 		0.152
(1.00) 		0.279
(1.00) 		0.105
(1.00)
MYH7 44 (15%) 246 0.153
(1.00) 		0.0414
(0.953) 		0.436
(1.00) 		0.553
(1.00) 		0.0337
(0.943) 		0.0627
(1.00) 		0.976
(1.00) 		0.427
(1.00) 		0.622
(1.00) 		0.643
(1.00)
ASB5 12 (4%) 278 0.486
(1.00) 		0.462
(1.00) 		0.579
(1.00) 		0.285
(1.00) 		0.662
(1.00) 		0.0587
(1.00) 		1
(1.00) 		0.787
(1.00) 		0.138
(1.00) 		1
(1.00)
GSDMC 16 (6%) 274 0.649
(1.00) 		0.52
(1.00) 		0.467
(1.00) 		0.585
(1.00) 		0.377
(1.00) 		0.8
(1.00) 		0.079
(1.00) 		0.801
(1.00) 		0.796
(1.00) 		0.737
(1.00)
HLA-DRA 13 (4%) 277 0.0761
(1.00) 		0.638
(1.00) 		0.136
(1.00) 		0.336
(1.00) 		0.288
(1.00) 		0.842
(1.00) 		0.674
(1.00) 		0.169
(1.00) 		1
(1.00) 		0.0326
(0.943)
OR11H12 15 (5%) 275 0.672
(1.00) 		0.477
(1.00) 		0.251
(1.00) 		0.706
(1.00) 		1
(1.00) 		0.843
(1.00) 		0.607
(1.00) 		0.939
(1.00) 		0.423
(1.00) 		0.315
(1.00)
TPTE 64 (22%) 226 0.727
(1.00) 		0.0356
(0.945) 		0.0372
(0.953) 		0.982
(1.00) 		0.223
(1.00) 		0.814
(1.00) 		0.743
(1.00) 		0.83
(1.00) 		0.568
(1.00) 		0.13
(1.00)
ASTN1 45 (16%) 245 0.593
(1.00) 		0.098
(1.00) 		1
(1.00) 		0.484
(1.00) 		0.0566
(1.00) 		0.684
(1.00) 		0.725
(1.00) 		0.836
(1.00) 		0.823
(1.00) 		0.477
(1.00)
KRAS 6 (2%) 284 0.131
(1.00) 		0.511
(1.00) 		0.178
(1.00) 		0.548
(1.00) 		0.119
(1.00) 		0.2
(1.00) 		0.4
(1.00) 		0.24
(1.00) 		0.28
(1.00) 		0.106
(1.00)
ZZZ3 3 (1%) 287 0.368
(1.00) 		1
(1.00) 		0.777
(1.00) 		0.505
(1.00) 		0.507
(1.00) 		0.465
(1.00) 		0.493
(1.00) 		0.461
(1.00)
DHX37 13 (4%) 277 0.771
(1.00) 		0.0088
(0.66) 		0.791
(1.00) 		1
(1.00) 		0.265
(1.00) 		0.391
(1.00) 		1
(1.00) 		1
(1.00) 		0.531
(1.00) 		0.909
(1.00)
NTN4 15 (5%) 275 0.712
(1.00) 		0.149
(1.00) 		0.611
(1.00) 		0.641
(1.00) 		0.946
(1.00) 		0.853
(1.00) 		0.841
(1.00) 		0.224
(1.00) 		0.895
(1.00) 		0.927
(1.00)
ACD 10 (3%) 280 0.714
(1.00) 		1
(1.00) 		0.956
(1.00) 		0.711
(1.00) 		0.665
(1.00) 		0.511
(1.00) 		0.355
(1.00) 		0.134
(1.00) 		0.919
(1.00) 		0.647
(1.00)
UBL7 10 (3%) 280 0.659
(1.00) 		0.608
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.895
(1.00) 		0.747
(1.00) 		0.597
(1.00) 		1
(1.00) 		0.883
(1.00)
GNA11 8 (3%) 282 0.541
(1.00) 		0.669
(1.00) 		0.774
(1.00) 		1
(1.00) 		1
(1.00) 		0.671
(1.00) 		0.831
(1.00) 		0.425
(1.00) 		0.64
(1.00) 		0.75
(1.00)
OR4M1 33 (11%) 257 0.505
(1.00) 		0.493
(1.00) 		0.941
(1.00) 		0.539
(1.00) 		0.363
(1.00) 		0.792
(1.00) 		0.807
(1.00) 		0.853
(1.00) 		0.718
(1.00) 		0.961
(1.00)
DPYD 56 (19%) 234 0.744
(1.00) 		0.728
(1.00) 		0.986
(1.00) 		0.75
(1.00) 		0.612
(1.00) 		0.784
(1.00) 		0.291
(1.00) 		0.945
(1.00) 		0.0675
(1.00) 		0.358
(1.00)
CAMK1D 14 (5%) 276 0.206
(1.00) 		0.395
(1.00) 		0.326
(1.00) 		0.576
(1.00) 		0.126
(1.00) 		0.303
(1.00) 		0.972
(1.00) 		0.535
(1.00) 		0.937
(1.00) 		0.916
(1.00)
RUNX1T1 36 (12%) 254 0.0827
(1.00) 		0.0158
(0.799) 		0.709
(1.00) 		0.359
(1.00) 		0.836
(1.00) 		0.259
(1.00) 		0.503
(1.00) 		0.552
(1.00) 		0.243
(1.00) 		0.316
(1.00)
NFATC4 17 (6%) 273 0.701
(1.00) 		0.434
(1.00) 		0.874
(1.00) 		0.492
(1.00) 		0.446
(1.00) 		0.104
(1.00) 		0.342
(1.00) 		0.132
(1.00) 		0.322
(1.00) 		0.387
(1.00)
C2ORF16 29 (10%) 261 0.00307
(0.522) 		0.803
(1.00) 		0.316
(1.00) 		0.0799
(1.00) 		0.179
(1.00) 		0.131
(1.00) 		0.166
(1.00) 		0.601
(1.00) 		0.0233
(0.915) 		0.154
(1.00)
ALDH5A1 10 (3%) 280 0.779
(1.00) 		0.0722
(1.00) 		0.415
(1.00) 		0.949
(1.00) 		0.0194
(0.852) 		0.0181
(0.81) 		0.874
(1.00) 		0.366
(1.00) 		0.0823
(1.00) 		0.231
(1.00)
KCNB2 59 (20%) 231 0.355
(1.00) 		0.0326
(0.943) 		0.185
(1.00) 		0.515
(1.00) 		0.38
(1.00) 		0.0475
(0.997) 		0.46
(1.00) 		0.302
(1.00) 		0.7
(1.00) 		0.188
(1.00)
NAP1L2 25 (9%) 265 0.387
(1.00) 		1
(1.00) 		0.644
(1.00) 		0.606
(1.00) 		0.455
(1.00) 		0.552
(1.00) 		0.634
(1.00) 		0.783
(1.00) 		0.00529
(0.555) 		0.621
(1.00)
C3 36 (12%) 254 0.77
(1.00) 		0.0409
(0.953) 		0.487
(1.00) 		0.795
(1.00) 		0.457
(1.00) 		0.334
(1.00) 		0.765
(1.00) 		0.939
(1.00) 		0.328
(1.00) 		0.653
(1.00)
RUFY4 11 (4%) 279 0.631
(1.00) 		0.144
(1.00) 		0.199
(1.00) 		0.727
(1.00) 		0.687
(1.00) 		0.866
(1.00) 		0.63
(1.00) 		0.327
(1.00) 		1
(1.00) 		0.741
(1.00)
IL32 9 (3%) 281 0.916
(1.00) 		0.356
(1.00) 		0.635
(1.00) 		1
(1.00) 		0.207
(1.00) 		0.715
(1.00) 		0.914
(1.00) 		0.615
(1.00)
SNRNP200 15 (5%) 275 0.123
(1.00) 		0.394
(1.00) 		0.151
(1.00) 		0.414
(1.00) 		0.158
(1.00) 		0.223
(1.00) 		0.755
(1.00) 		0.154
(1.00) 		0.449
(1.00) 		0.921
(1.00)
LY75 30 (10%) 260 0.831
(1.00) 		0.652
(1.00) 		0.885
(1.00) 		0.984
(1.00) 		0.291
(1.00) 		0.0135
(0.799) 		0.844
(1.00) 		0.543
(1.00) 		0.0633
(1.00) 		0.382
(1.00)
PLS1 14 (5%) 276 0.695
(1.00) 		0.652
(1.00) 		1
(1.00) 		0.31
(1.00) 		0.404
(1.00) 		0.169
(1.00) 		0.823
(1.00) 		0.713
(1.00) 		0.421
(1.00) 		0.784
(1.00)
B2M 5 (2%) 285 0.642
(1.00) 		0.45
(1.00) 		0.636
(1.00) 		0.634
(1.00) 		0.446
(1.00) 		0.563
(1.00) 		0.0774
(1.00) 		0.106
(1.00) 		1
(1.00) 		0.168
(1.00)
BRD7 10 (3%) 280 0.518
(1.00) 		1
(1.00) 		0.402
(1.00) 		1
(1.00) 		0.782
(1.00) 		0.692
(1.00) 		1
(1.00) 		1
(1.00) 		0.835
(1.00) 		1
(1.00)
DNER 27 (9%) 263 0.0159
(0.799) 		0.442
(1.00) 		0.906
(1.00) 		0.807
(1.00) 		0.646
(1.00) 		0.797
(1.00) 		0.548
(1.00) 		0.692
(1.00) 		0.456
(1.00) 		0.429
(1.00)
DDX17 10 (3%) 280 0.247
(1.00) 		0.119
(1.00) 		0.796
(1.00) 		0.885
(1.00) 		0.85
(1.00) 		0.294
(1.00) 		0.135
(1.00) 		0.51
(1.00) 		0.693
(1.00) 		0.353
(1.00)
SI 67 (23%) 223 0.0492
(1.00) 		0.359
(1.00) 		0.676
(1.00) 		0.364
(1.00) 		0.369
(1.00) 		0.419
(1.00) 		0.53
(1.00) 		0.336
(1.00) 		0.0713
(1.00) 		0.125
(1.00)
SLC7A11 12 (4%) 278 0.343
(1.00) 		0.566
(1.00) 		0.732
(1.00) 		0.474
(1.00) 		1
(1.00) 		0.635
(1.00) 		0.789
(1.00) 		0.756
(1.00) 		0.86
(1.00) 		0.389
(1.00)
PLK1 4 (1%) 286 1
(1.00) 		0.0651
(1.00) 		0.686
(1.00) 		0.766
(1.00) 		0.318
(1.00) 		0.155
(1.00) 		0.187
(1.00) 		1
(1.00)
EFHB 18 (6%) 272 0.712
(1.00) 		0.116
(1.00) 		0.164
(1.00) 		0.647
(1.00) 		0.166
(1.00) 		0.501
(1.00) 		0.423
(1.00) 		0.541
(1.00) 		1
(1.00) 		0.11
(1.00)
PHF3 11 (4%) 279 0.683
(1.00) 		0.365
(1.00) 		0.339
(1.00) 		0.414
(1.00) 		0.747
(1.00) 		0.771
(1.00) 		0.376
(1.00) 		0.882
(1.00) 		1
(1.00) 		0.647
(1.00)
PPFIA1 16 (6%) 274 0.809
(1.00) 		0.28
(1.00) 		0.46
(1.00) 		0.803
(1.00) 		1
(1.00) 		0.704
(1.00) 		0.55
(1.00) 		0.947
(1.00) 		0.127
(1.00) 		0.31
(1.00)
SH3RF2 34 (12%) 256 0.075
(1.00) 		0.0331
(0.943) 		0.802
(1.00) 		0.852
(1.00) 		0.0467
(0.997) 		0.523
(1.00) 		0.534
(1.00) 		0.719
(1.00) 		0.379
(1.00) 		0.339
(1.00)
UGT2B17 22 (8%) 268 0.0159
(0.799) 		1
(1.00) 		1
(1.00) 		0.272
(1.00) 		0.433
(1.00) 		0.932
(1.00) 		0.554
(1.00) 		0.718
(1.00) 		0.672
(1.00) 		0.454
(1.00)
PTK7 16 (6%) 274 0.227
(1.00) 		0.4
(1.00) 		0.267
(1.00) 		0.348
(1.00) 		0.498
(1.00) 		0.819
(1.00) 		0.189
(1.00) 		0.28
(1.00) 		0.121
(1.00) 		0.543
(1.00)
GPX5 18 (6%) 272 0.786
(1.00) 		0.0334
(0.943) 		0.257
(1.00) 		0.883
(1.00) 		0.867
(1.00) 		0.0325
(0.943) 		0.316
(1.00) 		0.121
(1.00) 		0.947
(1.00) 		0.524
(1.00)
KLK8 14 (5%) 276 0.695
(1.00) 		0.22
(1.00) 		0.169
(1.00) 		0.341
(1.00) 		0.216
(1.00) 		0.518
(1.00) 		0.873
(1.00) 		0.958
(1.00) 		0.347
(1.00) 		0.665
(1.00)
NUP205 14 (5%) 276 0.651
(1.00) 		0.544
(1.00) 		0.363
(1.00) 		0.56
(1.00) 		0.275
(1.00) 		0.644
(1.00) 		0.982
(1.00) 		0.978
(1.00) 		0.596
(1.00) 		1
(1.00)
KLRC3 8 (3%) 282 1
(1.00) 		0.605
(1.00) 		0.692
(1.00) 		0.3
(1.00) 		0.491
(1.00) 		0.925
(1.00) 		0.0515
(1.00) 		0.948
(1.00) 		0.271
(1.00) 		1
(1.00)
KCTD19 9 (3%) 281 0.834
(1.00) 		0.574
(1.00) 		0.0689
(1.00) 		1
(1.00) 		0.328
(1.00) 		0.418
(1.00) 		0.598
(1.00) 		0.369
(1.00) 		0.8
(1.00) 		0.136
(1.00)
SUN3 6 (2%) 284 1
(1.00) 		0.766
(1.00) 		0.438
(1.00) 		0.69
(1.00) 		1
(1.00) 		0.448
(1.00) 		0.792
(1.00) 		1
(1.00) 		0.213
(1.00) 		0.843
(1.00)
TBC1D22B 6 (2%) 284 0.773
(1.00) 		0.338
(1.00) 		0.694
(1.00) 		0.272
(1.00) 		1
(1.00) 		0.615
(1.00) 		0.509
(1.00) 		1
(1.00) 		0.883
(1.00) 		0.377
(1.00)
RASA2 14 (5%) 276 0.206
(1.00) 		0.618
(1.00) 		0.75
(1.00) 		0.795
(1.00) 		0.617
(1.00) 		0.824
(1.00) 		0.787
(1.00) 		0.515
(1.00) 		0.252
(1.00) 		0.663
(1.00)
EPS8 7 (2%) 283 0.184
(1.00) 		0.797
(1.00) 		1
(1.00) 		0.806
(1.00) 		0.301
(1.00) 		0.563
(1.00) 		0.956
(1.00) 		0.715
(1.00) 		0.562
(1.00) 		0.636
(1.00)
ANXA10 12 (4%) 278 0.00131
(0.334) 		0.0217
(0.894) 		0.741
(1.00) 		0.714
(1.00) 		0.622
(1.00) 		0.859
(1.00) 		0.876
(1.00) 		0.24
(1.00) 		0.457
(1.00) 		0.813
(1.00)
IGFL2 6 (2%) 284 0.509
(1.00) 		0.34
(1.00) 		0.604
(1.00) 		0.117
(1.00) 		0.78
(1.00) 		0.335
(1.00) 		0.173
(1.00) 		0.226
(1.00) 		0.674
(1.00) 		0.123
(1.00)
MED17 6 (2%) 284 0.0782
(1.00) 		0.884
(1.00) 		0.53
(1.00) 		0.913
(1.00) 		0.334
(1.00) 		0.736
(1.00) 		0.0647
(1.00) 		0.38
(1.00) 		0.447
(1.00) 		0.122
(1.00)
CD74 7 (2%) 283 0.493
(1.00) 		0.799
(1.00) 		0.683
(1.00) 		0.33
(1.00) 		1
(1.00) 		0.881
(1.00) 		0.103
(1.00) 		0.828
(1.00) 		0.563
(1.00) 		1
(1.00)
BCL2L11 5 (2%) 285 0.852
(1.00) 		0.856
(1.00) 		0.757
(1.00) 		0.761
(1.00) 		0.863
(1.00) 		0.357
(1.00) 		0.589
(1.00) 		0.693
(1.00) 		0.277
(1.00) 		0.401
(1.00)
ANO4 48 (17%) 242 0.353
(1.00) 		0.566
(1.00) 		0.274
(1.00) 		0.893
(1.00) 		0.411
(1.00) 		0.8
(1.00) 		0.995
(1.00) 		0.669
(1.00) 		0.62
(1.00) 		0.892
(1.00)
CAGE1 11 (4%) 279 0.633
(1.00) 		0.861
(1.00) 		0.82
(1.00) 		0.0615
(1.00) 		0.926
(1.00) 		0.973
(1.00) 		0.335
(1.00) 		0.679
(1.00) 		0.501
(1.00) 		0.812
(1.00)
EPHA3 31 (11%) 259 0.916
(1.00) 		0.863
(1.00) 		0.966
(1.00) 		0.803
(1.00) 		0.838
(1.00) 		0.993
(1.00) 		0.113
(1.00) 		0.0254
(0.927) 		0.271
(1.00) 		0.231
(1.00)
LTBP1 32 (11%) 258 0.181
(1.00) 		0.388
(1.00) 		0.391
(1.00) 		0.979
(1.00) 		0.615
(1.00) 		0.987
(1.00) 		0.661
(1.00) 		0.72
(1.00) 		0.572
(1.00) 		0.849
(1.00)
ANO7 11 (4%) 279 0.239
(1.00) 		1
(1.00) 		0.802
(1.00) 		0.656
(1.00) 		0.289
(1.00) 		0.335
(1.00) 		0.512
(1.00) 		0.918
(1.00) 		0.92
(1.00) 		0.459
(1.00)
LUZP1 6 (2%) 284 0.398
(1.00) 		0.249
(1.00) 		0.578
(1.00) 		0.474
(1.00) 		0.383
(1.00) 		0.804
(1.00) 		0.395
(1.00) 		0.533
(1.00) 		0.185
(1.00) 		0.379
(1.00)
HTR7 11 (4%) 279 1
(1.00) 		0.397
(1.00) 		0.483
(1.00) 		0.395
(1.00) 		0.0727
(1.00) 		0.614
(1.00) 		0.164
(1.00) 		0.135
(1.00) 		0.603
(1.00) 		0.407
(1.00)
ADAM33 16 (6%) 274 0.682
(1.00) 		0.219
(1.00) 		0.0908
(1.00) 		0.978
(1.00) 		0.809
(1.00) 		0.887
(1.00) 		0.956
(1.00) 		0.837
(1.00) 		1
(1.00) 		0.746
(1.00)
MYL2 9 (3%) 281 0.29
(1.00) 		0.356
(1.00) 		0.809
(1.00) 		0.339
(1.00) 		0.0624
(1.00) 		0.309
(1.00) 		0.664
(1.00) 		0.596
(1.00) 		0.2
(1.00) 		0.774
(1.00)
RNF133 9 (3%) 281 0.529
(1.00) 		0.29
(1.00) 		0.36
(1.00) 		0.478
(1.00) 		0.765
(1.00) 		0.878
(1.00) 		0.085
(1.00) 		0.23
(1.00) 		0.76
(1.00) 		0.353
(1.00)
ART3 12 (4%) 278 0.66
(1.00) 		0.343
(1.00) 		0.853
(1.00) 		0.25
(1.00) 		0.621
(1.00) 		0.861
(1.00) 		0.491
(1.00) 		0.849
(1.00) 		0.425
(1.00) 		0.906
(1.00)
SPRYD3 8 (3%) 282 0.542
(1.00) 		1
(1.00) 		0.681
(1.00) 		0.676
(1.00) 		0.745
(1.00) 		0.759
(1.00) 		0.441
(1.00) 		0.959
(1.00) 		0.563
(1.00) 		0.306
(1.00)
HFE2 12 (4%) 278 0.238
(1.00) 		0.271
(1.00) 		0.732
(1.00) 		0.829
(1.00) 		0.244
(1.00) 		0.47
(1.00) 		0.487
(1.00) 		0.477
(1.00) 		0.427
(1.00) 		0.476
(1.00)
ANKRD11 28 (10%) 262 0.0881
(1.00) 		1
(1.00) 		0.189
(1.00) 		0.249
(1.00) 		0.702
(1.00) 		0.427
(1.00) 		0.72
(1.00) 		0.204
(1.00) 		0.0882
(1.00) 		1
(1.00)
TTBK2 15 (5%) 275 0.102
(1.00) 		0.944
(1.00) 		0.257
(1.00) 		0.138
(1.00) 		1
(1.00) 		0.782
(1.00) 		0.902
(1.00) 		0.791
(1.00) 		0.268
(1.00) 		0.481
(1.00)
MIIP 10 (3%) 280 0.923
(1.00) 		0.563
(1.00) 		0.588
(1.00) 		0.124
(1.00) 		0.198
(1.00) 		0.156
(1.00) 		0.187
(1.00) 		0.526
(1.00) 		0.692
(1.00) 		0.188
(1.00)
DDR1 16 (6%) 274 0.615
(1.00) 		0.543
(1.00) 		0.403
(1.00) 		0.0464
(0.997) 		0.585
(1.00) 		0.102
(1.00) 		0.49
(1.00) 		1
(1.00) 		0.685
(1.00) 		0.868
(1.00)
FAM26F 5 (2%) 285 0.376
(1.00) 		0.266
(1.00) 		0.696
(1.00) 		0.332
(1.00) 		0.744
(1.00) 		0.562
(1.00) 		0.943
(1.00) 		0.48
(1.00) 		0.86
(1.00) 		0.52
(1.00)
CRIPT 3 (1%) 287 0.482
(1.00) 		0.487
(1.00) 		0.517
(1.00) 		0.566
(1.00) 		0.181
(1.00) 		0.193
(1.00) 		1
(1.00) 		0.463
(1.00)
PRKRIR 10 (3%) 280 0.0658
(1.00) 		0.00613
(0.558) 		0.481
(1.00) 		0.0807
(1.00) 		0.924
(1.00) 		0.333
(1.00) 		0.817
(1.00) 		1
(1.00) 		0.692
(1.00) 		0.469
(1.00)
PTPRB 62 (21%) 228 0.306
(1.00) 		0.0576
(1.00) 		0.575
(1.00) 		0.208
(1.00) 		0.217
(1.00) 		0.337
(1.00) 		0.87
(1.00) 		0.756
(1.00) 		0.354
(1.00) 		0.625
(1.00)
ITPR2 16 (6%) 274 0.553
(1.00) 		0.49
(1.00) 		0.957
(1.00) 		0.565
(1.00) 		0.426
(1.00) 		0.941
(1.00) 		0.272
(1.00) 		0.642
(1.00) 		0.245
(1.00) 		0.926
(1.00)
TIGIT 5 (2%) 285 0.852
(1.00) 		0.742
(1.00) 		0.285
(1.00) 		1
(1.00) 		0.0828
(1.00) 		0.357
(1.00) 		0.424
(1.00) 		0.0273
(0.942) 		0.279
(1.00) 		0.137
(1.00)
PARP9 13 (4%) 277 0.632
(1.00) 		0.307
(1.00) 		0.535
(1.00) 		0.16
(1.00) 		0.823
(1.00) 		0.507
(1.00) 		0.648
(1.00) 		0.249
(1.00) 		0.938
(1.00) 		1
(1.00)
PRKD3 7 (2%) 283 0.206
(1.00) 		0.802
(1.00) 		0.87
(1.00) 		0.389
(1.00) 		0.0413
(0.953) 		0.504
(1.00) 		0.351
(1.00) 		0.741
(1.00) 		0.45
(1.00) 		0.233
(1.00)
CALU 7 (2%) 283 0.236
(1.00) 		0.267
(1.00) 		0.0873
(1.00) 		0.709
(1.00) 		0.303
(1.00) 		0.751
(1.00) 		0.645
(1.00) 		1
(1.00) 		0.132
(1.00) 		0.841
(1.00)
SCAI 5 (2%) 285 0.85
(1.00) 		1
(1.00) 		0.662
(1.00) 		0.548
(1.00) 		0.63
(1.00) 		1
(1.00) 		0.62
(1.00) 		1
(1.00) 		0.622
(1.00) 		0.805
(1.00)
IGFL3 4 (1%) 286 0.455
(1.00) 		0.017
(0.805) 		1
(1.00) 		0.438
(1.00) 		1
(1.00) 		0.896
(1.00) 		0.383
(1.00) 		0.764
(1.00)
ZMYM1 13 (4%) 277 0.937
(1.00) 		1
(1.00) 		0.717
(1.00) 		0.412
(1.00) 		0.681
(1.00) 		0.737
(1.00) 		0.223
(1.00) 		0.739
(1.00) 		0.159
(1.00) 		0.192
(1.00)
MYO5B 44 (15%) 246 0.977
(1.00) 		0.276
(1.00) 		0.605
(1.00) 		0.735
(1.00) 		0.34
(1.00) 		0.473
(1.00) 		0.892
(1.00) 		0.98
(1.00) 		0.777
(1.00) 		0.526
(1.00)
STK31 38 (13%) 252 0.633
(1.00) 		0.0405
(0.953) 		0.353
(1.00) 		0.663
(1.00) 		0.00193
(0.41) 		0.0359
(0.945) 		0.792
(1.00) 		0.959
(1.00) 		0.134
(1.00) 		0.371
(1.00)
PCDH18 50 (17%) 240 0.0209
(0.875) 		0.85
(1.00) 		0.0163
(0.799) 		0.726
(1.00) 		0.367
(1.00) 		0.752
(1.00) 		0.701
(1.00) 		0.73
(1.00) 		0.0757
(1.00) 		1
(1.00)
SPATA8 13 (4%) 277 0.488
(1.00) 		0.679
(1.00) 		0.912
(1.00) 		0.757
(1.00) 		0.43
(1.00) 		0.592
(1.00) 		0.933
(1.00) 		0.255
(1.00) 		0.124
(1.00) 		1
(1.00)
IBTK 5 (2%) 285 0.262
(1.00) 		1
(1.00) 		0.394
(1.00) 		0.332
(1.00) 		0.627
(1.00) 		0.0176
(0.81) 		0.196
(1.00) 		0.681
(1.00) 		0.309
(1.00) 		0.215
(1.00)
AHNAK 41 (14%) 249 0.395
(1.00) 		0.352
(1.00) 		0.103
(1.00) 		0.452
(1.00) 		0.0985
(1.00) 		0.212
(1.00) 		0.423
(1.00) 		0.977
(1.00) 		0.105
(1.00) 		0.302
(1.00)
PPP1R13L 14 (5%) 276 0.694
(1.00) 		0.394
(1.00) 		0.328
(1.00) 		0.1
(1.00) 		0.742
(1.00) 		0.93
(1.00) 		0.144
(1.00) 		0.312
(1.00) 		1
(1.00) 		0.57
(1.00)
PRM2 5 (2%) 285 0.447
(1.00) 		1
(1.00) 		0.768
(1.00) 		0.673
(1.00) 		0.45
(1.00) 		0.562
(1.00) 		0.346
(1.00) 		0.679
(1.00) 		0.309
(1.00) 		0.215
(1.00)
AFP 17 (6%) 273 0.206
(1.00) 		0.018
(0.81) 		0.446
(1.00) 		0.887
(1.00) 		0.0419
(0.953) 		0.371
(1.00) 		0.308
(1.00) 		0.932
(1.00) 		0.261
(1.00) 		0.474
(1.00)
SNCAIP 53 (18%) 237 0.656
(1.00) 		0.56
(1.00) 		0.5
(1.00) 		0.927
(1.00) 		0.769
(1.00) 		0.576
(1.00) 		0.737
(1.00) 		0.258
(1.00) 		0.684
(1.00) 		0.174
(1.00)
DDHD1 6 (2%) 284 0.00485
(0.555) 		0.0718
(1.00) 		0.826
(1.00) 		1
(1.00) 		0.876
(1.00) 		0.556
(1.00) 		0.87
(1.00) 		0.884
(1.00) 		0.287
(1.00) 		0.698
(1.00)
PLXNC1 17 (6%) 273 0.417
(1.00) 		0.485
(1.00) 		0.169
(1.00) 		0.698
(1.00) 		0.295
(1.00) 		0.321
(1.00) 		0.738
(1.00) 		0.86
(1.00) 		0.146
(1.00) 		0.232
(1.00)
TEC 13 (4%) 277 0.282
(1.00) 		0.284
(1.00) 		0.619
(1.00) 		0.655
(1.00) 		0.124
(1.00) 		0.167
(1.00) 		0.482
(1.00) 		0.881
(1.00) 		0.86
(1.00) 		1
(1.00)
SYNE1 74 (26%) 216 0.466
(1.00) 		0.139
(1.00) 		0.672
(1.00) 		0.739
(1.00) 		0.613
(1.00) 		0.81
(1.00) 		0.62
(1.00) 		0.511
(1.00) 		0.682
(1.00) 		0.633
(1.00)
ACBD5 5 (2%) 285 0.85
(1.00) 		0.0945
(1.00) 		0.275
(1.00) 		0.439
(1.00) 		0.786
(1.00) 		0.38
(1.00) 		0.277
(1.00) 		0.645
(1.00)
NOMO1 16 (6%) 274 0.616
(1.00) 		0.197
(1.00) 		0.544
(1.00) 		1
(1.00) 		0.59
(1.00) 		0.769
(1.00) 		0.886
(1.00) 		0.257
(1.00) 		0.687
(1.00) 		0.933
(1.00)
CD2 22 (8%) 268 0.696
(1.00) 		0.785
(1.00) 		0.433
(1.00) 		0.916
(1.00) 		0.924
(1.00) 		0.939
(1.00) 		0.937
(1.00) 		0.941
(1.00) 		0.811
(1.00) 		0.229
(1.00)
POLN 10 (3%) 280 0.161
(1.00) 		0.47
(1.00) 		0.704
(1.00) 		0.167
(1.00) 		0.521
(1.00) 		0.407
(1.00) 		0.875
(1.00) 		0.263
(1.00) 		0.668
(1.00) 		0.666
(1.00)
LIPH 12 (4%) 278 0.527
(1.00) 		0.565
(1.00) 		0.866
(1.00) 		0.0582
(1.00) 		0.581
(1.00) 		0.201
(1.00) 		0.562
(1.00) 		0.62
(1.00) 		0.798
(1.00) 		0.492
(1.00)
CLCN6 12 (4%) 278 0.708
(1.00) 		1
(1.00) 		0.92
(1.00) 		0.234
(1.00) 		0.759
(1.00) 		0.896
(1.00) 		0.675
(1.00) 		0.106
(1.00) 		0.314
(1.00) 		0.0737
(1.00)
NEK5 17 (6%) 273 0.231
(1.00) 		0.258
(1.00) 		0.467
(1.00) 		0.938
(1.00) 		0.0738
(1.00) 		0.0442
(0.988) 		0.178
(1.00) 		0.742
(1.00) 		0.00459
(0.555) 		0.397
(1.00)
BRF1 5 (2%) 285 0.101
(1.00) 		1
(1.00) 		0.392
(1.00) 		1
(1.00) 		0.447
(1.00) 		0.181
(1.00) 		0.119
(1.00) 		0.926
(1.00) 		0.383
(1.00) 		0.649
(1.00)
GRIN1 10 (3%) 280 1
(1.00) 		0.0666
(1.00) 		0.207
(1.00) 		0.931
(1.00) 		0.215
(1.00) 		0.661
(1.00) 		0.581
(1.00) 		0.465
(1.00) 		0.0255
(0.927) 		0.469
(1.00)
POLA2 8 (3%) 282 0.285
(1.00) 		1
(1.00) 		0.509
(1.00) 		0.651
(1.00) 		0.325
(1.00) 		0.549
(1.00) 		0.19
(1.00) 		0.201
(1.00) 		0.638
(1.00) 		1
(1.00)
UBR5 21 (7%) 269 0.773
(1.00) 		0.315
(1.00) 		0.419
(1.00) 		0.651
(1.00) 		0.847
(1.00) 		0.858
(1.00) 		0.404
(1.00) 		0.685
(1.00) 		0.52
(1.00) 		0.735
(1.00)
AP2B1 8 (3%) 282 0.898
(1.00) 		0.383
(1.00) 		0.719
(1.00) 		0.656
(1.00) 		0.156
(1.00) 		0.0512
(1.00) 		0.288
(1.00) 		0.845
(1.00) 		0.496
(1.00) 		0.773
(1.00)
MMP11 7 (2%) 283 0.0969
(1.00) 		0.131
(1.00) 		1
(1.00) 		0.759
(1.00) 		0.0116
(0.776) 		0.227
(1.00) 		0.431
(1.00) 		0.371
(1.00) 		0.512
(1.00) 		0.697
(1.00)
EDN1 9 (3%) 281 1
(1.00) 		1
(1.00) 		0.575
(1.00) 		0.927
(1.00) 		0.639
(1.00) 		0.504
(1.00) 		0.734
(1.00) 		0.299
(1.00) 		0.19
(1.00) 		0.615
(1.00)
WNT8A 7 (2%) 283 1
(1.00) 		0.383
(1.00) 		0.721
(1.00) 		0.413
(1.00) 		0.713
(1.00) 		0.255
(1.00) 		0.259
(1.00) 		0.868
(1.00) 		0.802
(1.00) 		1
(1.00)
MYF5 14 (5%) 276 0.694
(1.00) 		0.209
(1.00) 		0.844
(1.00) 		0.661
(1.00) 		0.217
(1.00) 		0.295
(1.00) 		0.511
(1.00) 		0.376
(1.00) 		0.45
(1.00) 		0.5
(1.00)
PLOD1 6 (2%) 284 0.039
(0.953) 		0.668
(1.00) 		0.802
(1.00) 		0.69
(1.00) 		0.779
(1.00) 		0.946
(1.00) 		0.867
(1.00) 		0.0758
(1.00) 		0.581
(1.00) 		1
(1.00)
UGT1A10 16 (6%) 274 0.947
(1.00) 		0.85
(1.00) 		0.648
(1.00) 		0.886
(1.00) 		1
(1.00) 		0.873
(1.00) 		0.0518
(1.00) 		0.0719
(1.00) 		0.199
(1.00) 		0.525
(1.00)
WDR86 7 (2%) 283 0.635
(1.00) 		0.496
(1.00) 		0.911
(1.00) 		0.759
(1.00) 		1
(1.00) 		0.882
(1.00) 		0.549
(1.00) 		0.381
(1.00) 		0.513
(1.00) 		0.843
(1.00)
GLB1L 4 (1%) 286 0.0402
(0.953) 		0.569
(1.00) 		0.461
(1.00) 		0.437
(1.00) 		0.446
(1.00) 		0.644
(1.00) 		0.187
(1.00) 		0.704
(1.00)
TP63 50 (17%) 240 0.961
(1.00) 		0.0796
(1.00) 		0.0294
(0.943) 		0.456
(1.00) 		0.132
(1.00) 		0.588
(1.00) 		0.701
(1.00) 		0.788
(1.00) 		0.357
(1.00) 		0.223
(1.00)
TLL1 58 (20%) 232 0.147
(1.00) 		0.0044
(0.555) 		0.7
(1.00) 		0.561
(1.00) 		0.00613
(0.558) 		0.221
(1.00) 		0.34
(1.00) 		0.845
(1.00) 		0.637
(1.00) 		0.791
(1.00)
SOCS5 8 (3%) 282 0.352
(1.00) 		0.387
(1.00) 		0.68
(1.00) 		1
(1.00) 		0.744
(1.00) 		0.804
(1.00) 		0.549
(1.00) 		0.5
(1.00) 		0.771
(1.00) 		0.841
(1.00)
VGLL1 6 (2%) 284 0.51
(1.00) 		0.669
(1.00) 		1
(1.00) 		0.761
(1.00) 		0.6
(1.00) 		0.527
(1.00) 		0.288
(1.00) 		0.791
(1.00) 		0.621
(1.00) 		0.23
(1.00)
DMGDH 15 (5%) 275 0.0484
(0.997) 		0.181
(1.00) 		0.00434
(0.555) 		0.0284
(0.943) 		0.5
(1.00) 		0.653
(1.00) 		0.746
(1.00) 		0.806
(1.00) 		0.301
(1.00) 		0.603
(1.00)
EEF1A1 7 (2%) 283 0.133
(1.00) 		0.235
(1.00) 		0.334
(1.00) 		0.834
(1.00) 		0.897
(1.00) 		1
(1.00) 		0.227
(1.00) 		1
(1.00) 		0.269
(1.00) 		0.21
(1.00)
PDLIM5 10 (3%) 280 0.361
(1.00) 		0.923
(1.00) 		0.929
(1.00) 		0.624
(1.00) 		0.784
(1.00) 		0.462
(1.00) 		0.57
(1.00) 		0.196
(1.00) 		0.48
(1.00) 		0.311
(1.00)
RNF40 7 (2%) 283 0.158
(1.00) 		0.799
(1.00) 		0.369
(1.00) 		0.431
(1.00) 		0.71
(1.00) 		0.915
(1.00) 		0.803
(1.00) 		1
(1.00) 		0.236
(1.00) 		0.865
(1.00)
SAMHD1 14 (5%) 276 0.478
(1.00) 		0.239
(1.00) 		1
(1.00) 		0.623
(1.00) 		0.0301
(0.943) 		0.142
(1.00) 		0.865
(1.00) 		0.554
(1.00) 		0.114
(1.00) 		0.375
(1.00)
PAPPA2 80 (28%) 210 0.0833
(1.00) 		0.0606
(1.00) 		0.249
(1.00) 		0.282
(1.00) 		0.0537
(1.00) 		0.798
(1.00) 		0.406
(1.00) 		0.217
(1.00) 		0.163
(1.00) 		0.112
(1.00)
GSTM5 7 (2%) 283 0.491
(1.00) 		0.802
(1.00) 		0.399
(1.00) 		1
(1.00) 		0.348
(1.00) 		0.915
(1.00) 		0.505
(1.00) 		0.572
(1.00) 		0.801
(1.00) 		0.429
(1.00)
DNAJC5G 7 (2%) 283 0.7
(1.00) 		0.8
(1.00) 		0.721
(1.00) 		0.691
(1.00) 		0.798
(1.00) 		0.722
(1.00) 		0.89
(1.00) 		0.825
(1.00) 		0.721
(1.00) 		0.307
(1.00)
CHD2 19 (7%) 271 0.476
(1.00) 		1
(1.00) 		0.907
(1.00) 		0.734
(1.00) 		0.832
(1.00) 		0.93
(1.00) 		0.671
(1.00) 		0.0985
(1.00) 		0.676
(1.00) 		1
(1.00)
VPS33A 10 (3%) 280 0.301
(1.00) 		0.61
(1.00) 		0.0015
(0.348) 		0.289
(1.00) 		1
(1.00) 		0.868
(1.00) 		0.793
(1.00) 		0.743
(1.00) 		0.0515
(1.00) 		0.267
(1.00)
VSX1 5 (2%) 285 0.377
(1.00) 		0.0681
(1.00) 		0.681
(1.00) 		0.277
(1.00) 		1
(1.00) 		0.766
(1.00) 		0.833
(1.00) 		0.549
(1.00) 		0.738
(1.00) 		1
(1.00)
SPAG1 11 (4%) 279 0.862
(1.00) 		0.459
(1.00) 		0.0284
(0.943) 		1
(1.00) 		0.167
(1.00) 		0.132
(1.00) 		0.513
(1.00) 		0.251
(1.00) 		0.278
(1.00) 		0.566
(1.00)
MIA2 5 (2%) 285 0.544
(1.00) 		1
(1.00) 		0.52
(1.00) 		0.589
(1.00) 		1
(1.00) 		0.216
(1.00) 		0.403
(1.00) 		0.792
(1.00) 		1
(1.00) 		0.803
(1.00)
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.16

Table S1.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NRAS MUTATED 35 33 19
NRAS WILD-TYPE 41 76 86

Figure S1.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.8

Table S2.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NRAS MUTATED 39 25 23
NRAS WILD-TYPE 59 91 53

Figure S2.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NRAS MUTATED 16 19 7 8
NRAS WILD-TYPE 31 39 19 30
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NRAS MUTATED 11 19 10 10
NRAS WILD-TYPE 16 39 25 39
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NRAS MUTATED 33 23 31
NRAS WILD-TYPE 70 63 70
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NRAS MUTATED 29 24 20 14
NRAS WILD-TYPE 54 57 58 34
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NRAS MUTATED 11 24 21 27 0
NRAS WILD-TYPE 30 55 47 59 6
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NRAS MUTATED 19 37 17 10
NRAS WILD-TYPE 60 73 38 26
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.17

Table S9.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NRAS MUTATED 12 22 46
NRAS WILD-TYPE 63 64 62

Figure S3.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NRAS MUTATED 44 26 10
NRAS WILD-TYPE 89 82 18
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CDKN2A MUTATED 9 11 21
CDKN2A WILD-TYPE 67 98 84
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CDKN2A MUTATED 18 18 5
CDKN2A WILD-TYPE 80 98 71
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.77

Table S13.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CDKN2A MUTATED 6 5 10 6
CDKN2A WILD-TYPE 41 53 16 32

Figure S4.  Get High-res Image Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CDKN2A MUTATED 5 8 5 9
CDKN2A WILD-TYPE 22 50 30 40
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CDKN2A MUTATED 14 13 14
CDKN2A WILD-TYPE 89 73 87
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CDKN2A MUTATED 11 13 12 5
CDKN2A WILD-TYPE 72 68 66 43
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CDKN2A MUTATED 4 11 12 11 1
CDKN2A WILD-TYPE 37 68 56 75 5
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CDKN2A MUTATED 8 19 9 3
CDKN2A WILD-TYPE 71 91 46 33
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CDKN2A MUTATED 12 10 16
CDKN2A WILD-TYPE 63 76 92
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CDKN2A MUTATED 22 13 3
CDKN2A WILD-TYPE 111 95 25
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TP53 MUTATED 10 19 19
TP53 WILD-TYPE 66 90 86
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 0.55

Table S22.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TP53 MUTATED 24 19 5
TP53 WILD-TYPE 74 97 71

Figure S5.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TP53 MUTATED 5 8 2 10
TP53 WILD-TYPE 42 50 24 28
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TP53 MUTATED 3 13 4 5
TP53 WILD-TYPE 24 45 31 44
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TP53 MUTATED 14 20 14
TP53 WILD-TYPE 89 66 87
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TP53 MUTATED 13 16 10 9
TP53 WILD-TYPE 70 65 68 39
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TP53 MUTATED 5 10 15 13 0
TP53 WILD-TYPE 36 69 53 73 6
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TP53 MUTATED 12 20 7 4
TP53 WILD-TYPE 67 90 48 32
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TP53 MUTATED 12 10 20
TP53 WILD-TYPE 63 76 88
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TP53 MUTATED 24 14 4
TP53 WILD-TYPE 109 94 24
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTEN MUTATED 5 6 14
PTEN WILD-TYPE 71 103 91
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTEN MUTATED 10 6 9
PTEN WILD-TYPE 88 110 67
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.86

Table S33.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PTEN MUTATED 5 8 0 0
PTEN WILD-TYPE 42 50 26 38

Figure S6.  Get High-res Image Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTEN MUTATED 1 8 0 4
PTEN WILD-TYPE 26 50 35 45
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTEN MUTATED 5 7 13
PTEN WILD-TYPE 98 79 88
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTEN MUTATED 8 6 10 1
PTEN WILD-TYPE 75 75 68 47
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PTEN MUTATED 7 9 4 4 1
PTEN WILD-TYPE 34 70 64 82 5
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PTEN MUTATED 3 11 4 7
PTEN WILD-TYPE 76 99 51 29
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.94

Table S39.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PTEN MUTATED 2 12 10
PTEN WILD-TYPE 73 74 98

Figure S7.  Get High-res Image Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PTEN MUTATED 10 9 5
PTEN WILD-TYPE 123 99 23
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S41.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NF1 MUTATED 14 14 10
NF1 WILD-TYPE 62 95 95
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NF1 MUTATED 16 12 10
NF1 WILD-TYPE 82 104 66
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NF1 MUTATED 6 9 3 9
NF1 WILD-TYPE 41 49 23 29
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NF1 MUTATED 4 7 5 11
NF1 WILD-TYPE 23 51 30 38
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NF1 MUTATED 15 12 11
NF1 WILD-TYPE 88 74 90
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NF1 MUTATED 14 7 8 9
NF1 WILD-TYPE 69 74 70 39
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NF1 MUTATED 6 7 13 12 0
NF1 WILD-TYPE 35 72 55 74 6
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NF1 MUTATED 13 12 8 5
NF1 WILD-TYPE 66 98 47 31
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NF1 MUTATED 14 6 16
NF1 WILD-TYPE 61 80 92
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NF1 MUTATED 22 10 4
NF1 WILD-TYPE 111 98 24
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RAC1 MUTATED 7 10 3
RAC1 WILD-TYPE 69 99 102
'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RAC1 MUTATED 4 12 4
RAC1 WILD-TYPE 94 104 72
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RAC1 MUTATED 5 3 1 4
RAC1 WILD-TYPE 42 55 25 34
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RAC1 MUTATED 1 7 3 2
RAC1 WILD-TYPE 26 51 32 47
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RAC1 MUTATED 7 7 6
RAC1 WILD-TYPE 96 79 95
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RAC1 MUTATED 4 8 5 3
RAC1 WILD-TYPE 79 73 73 45
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RAC1 MUTATED 5 3 7 5 0
RAC1 WILD-TYPE 36 76 61 81 6
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RAC1 MUTATED 3 7 6 4
RAC1 WILD-TYPE 76 103 49 32
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RAC1 MUTATED 5 5 8
RAC1 WILD-TYPE 70 81 100
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RAC1 MUTATED 9 6 3
RAC1 WILD-TYPE 124 102 25
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ARID2 MUTATED 11 13 13
ARID2 WILD-TYPE 65 96 92
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.92

Table S62.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ARID2 MUTATED 20 11 6
ARID2 WILD-TYPE 78 105 70

Figure S8.  Get High-res Image Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ARID2 MUTATED 8 10 2 5
ARID2 WILD-TYPE 39 48 24 33
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ARID2 MUTATED 4 11 4 6
ARID2 WILD-TYPE 23 47 31 43
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ARID2 MUTATED 13 11 13
ARID2 WILD-TYPE 90 75 88
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ARID2 MUTATED 14 11 7 5
ARID2 WILD-TYPE 69 70 71 43
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ARID2 MUTATED 9 10 5 11 0
ARID2 WILD-TYPE 32 69 63 75 6
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ARID2 MUTATED 9 13 4 9
ARID2 WILD-TYPE 70 97 51 27
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ARID2 MUTATED 9 11 15
ARID2 WILD-TYPE 66 75 93
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ARID2 MUTATED 15 13 7
ARID2 WILD-TYPE 118 95 21
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PPP6C MUTATED 5 7 8
PPP6C WILD-TYPE 71 102 97
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PPP6C MUTATED 9 7 4
PPP6C WILD-TYPE 89 109 72
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PPP6C MUTATED 5 2 2 2
PPP6C WILD-TYPE 42 56 24 36
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PPP6C MUTATED 4 2 2 3
PPP6C WILD-TYPE 23 56 33 46
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PPP6C MUTATED 6 6 8
PPP6C WILD-TYPE 97 80 93
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PPP6C MUTATED 5 7 8 0
PPP6C WILD-TYPE 78 74 70 48
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PPP6C MUTATED 6 6 4 4 0
PPP6C WILD-TYPE 35 73 64 82 6
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PPP6C MUTATED 2 9 3 6
PPP6C WILD-TYPE 77 101 52 30
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PPP6C MUTATED 4 6 9
PPP6C WILD-TYPE 71 80 99
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PPP6C MUTATED 9 6 4
PPP6C WILD-TYPE 124 102 24
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MAP2K1 MUTATED 2 9 4
MAP2K1 WILD-TYPE 74 100 101
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00411 (Fisher's exact test), Q value = 0.55

Table S82.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MAP2K1 MUTATED 1 12 2
MAP2K1 WILD-TYPE 97 104 74

Figure S9.  Get High-res Image Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MAP2K1 MUTATED 6 2 1 1
MAP2K1 WILD-TYPE 41 56 25 37
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.94

Table S84.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MAP2K1 MUTATED 5 1 2 2
MAP2K1 WILD-TYPE 22 57 33 47

Figure S10.  Get High-res Image Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MAP2K1 MUTATED 2 5 8
MAP2K1 WILD-TYPE 101 81 93
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MAP2K1 MUTATED 2 2 8 3
MAP2K1 WILD-TYPE 81 79 70 45
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MAP2K1 MUTATED 2 8 2 3 0
MAP2K1 WILD-TYPE 39 71 66 83 6
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MAP2K1 MUTATED 3 6 4 2
MAP2K1 WILD-TYPE 76 104 51 34
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MAP2K1 MUTATED 2 9 4
MAP2K1 WILD-TYPE 73 77 104
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MAP2K1 MUTATED 4 9 2
MAP2K1 WILD-TYPE 129 99 26
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
COL3A1 MUTATED 16 18 25
COL3A1 WILD-TYPE 60 91 80
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
COL3A1 MUTATED 20 24 15
COL3A1 WILD-TYPE 78 92 61
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
COL3A1 MUTATED 9 12 6 9
COL3A1 WILD-TYPE 38 46 20 29
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
COL3A1 MUTATED 7 12 3 14
COL3A1 WILD-TYPE 20 46 32 35
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
COL3A1 MUTATED 18 16 25
COL3A1 WILD-TYPE 85 70 76
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
COL3A1 MUTATED 18 12 19 10
COL3A1 WILD-TYPE 65 69 59 38
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
COL3A1 MUTATED 8 19 14 14 1
COL3A1 WILD-TYPE 33 60 54 72 5
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
COL3A1 MUTATED 15 18 14 9
COL3A1 WILD-TYPE 64 92 41 27
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
COL3A1 MUTATED 15 19 22
COL3A1 WILD-TYPE 60 67 86
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
COL3A1 MUTATED 31 20 5
COL3A1 WILD-TYPE 102 88 23
'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZFX MUTATED 4 7 4
ZFX WILD-TYPE 72 102 101
'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZFX MUTATED 4 7 4
ZFX WILD-TYPE 94 109 72
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ZFX MUTATED 1 4 0 2
ZFX WILD-TYPE 46 54 26 36
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZFX MUTATED 1 3 1 2
ZFX WILD-TYPE 26 55 34 47
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZFX MUTATED 5 8 2
ZFX WILD-TYPE 98 78 99
'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZFX MUTATED 4 5 2 4
ZFX WILD-TYPE 79 76 76 44
'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZFX MUTATED 1 2 4 8 0
ZFX WILD-TYPE 40 77 64 78 6
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZFX MUTATED 6 7 1 1
ZFX WILD-TYPE 73 103 54 35
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZFX MUTATED 6 1 6
ZFX WILD-TYPE 69 85 102
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.95

Table S110.  Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZFX MUTATED 11 2 0
ZFX WILD-TYPE 122 106 28

Figure S11.  Get High-res Image Gene #11: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HSD11B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HSD11B1 MUTATED 4 7 3
HSD11B1 WILD-TYPE 72 102 102
'HSD11B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HSD11B1 MUTATED 5 8 1
HSD11B1 WILD-TYPE 93 108 75
'HSD11B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
HSD11B1 MUTATED 3 2 0 1
HSD11B1 WILD-TYPE 44 56 26 37
'HSD11B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HSD11B1 MUTATED 3 1 1 1
HSD11B1 WILD-TYPE 24 57 34 48
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HSD11B1 MUTATED 6 6 2
HSD11B1 WILD-TYPE 97 80 99
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HSD11B1 MUTATED 3 6 2 3
HSD11B1 WILD-TYPE 80 75 76 45
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
HSD11B1 MUTATED 4 3 4 3 0
HSD11B1 WILD-TYPE 37 76 64 83 6
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
HSD11B1 MUTATED 4 5 3 2
HSD11B1 WILD-TYPE 75 105 52 34
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
HSD11B1 MUTATED 4 3 5
HSD11B1 WILD-TYPE 71 83 103
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
HSD11B1 MUTATED 6 4 2
HSD11B1 WILD-TYPE 127 104 26
'IL5RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IL5RA MUTATED 3 8 6
IL5RA WILD-TYPE 73 101 99
'IL5RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IL5RA MUTATED 7 6 4
IL5RA WILD-TYPE 91 110 72
'IL5RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
IL5RA MUTATED 2 3 1 5
IL5RA WILD-TYPE 45 55 25 33
'IL5RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IL5RA MUTATED 0 5 1 5
IL5RA WILD-TYPE 27 53 34 44
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IL5RA MUTATED 4 8 5
IL5RA WILD-TYPE 99 78 96
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IL5RA MUTATED 6 3 3 5
IL5RA WILD-TYPE 77 78 75 43
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IL5RA MUTATED 1 6 5 4 0
IL5RA WILD-TYPE 40 73 63 82 6
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IL5RA MUTATED 6 6 3 1
IL5RA WILD-TYPE 73 104 52 35
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IL5RA MUTATED 7 3 6
IL5RA WILD-TYPE 68 83 102
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'IL5RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IL5RA MUTATED 10 6 0
IL5RA WILD-TYPE 123 102 28
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
FAM58A MUTATED 2 4 0
FAM58A WILD-TYPE 74 105 105
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
FAM58A MUTATED 1 4 1
FAM58A WILD-TYPE 97 112 75
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
FAM58A MUTATED 1 1 1 1
FAM58A WILD-TYPE 46 57 25 37
'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
FAM58A MUTATED 0 1 1 2
FAM58A WILD-TYPE 27 57 34 47
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
FAM58A MUTATED 2 4 0
FAM58A WILD-TYPE 101 82 101
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
FAM58A MUTATED 2 2 0 2
FAM58A WILD-TYPE 81 79 78 46
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
FAM58A MUTATED 1 1 3 1 0
FAM58A WILD-TYPE 40 78 65 85 6
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0076 (Fisher's exact test), Q value = 0.62

Table S138.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
FAM58A MUTATED 5 0 0 1
FAM58A WILD-TYPE 74 110 55 35

Figure S12.  Get High-res Image Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00822 (Fisher's exact test), Q value = 0.64

Table S139.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
FAM58A MUTATED 5 0 1
FAM58A WILD-TYPE 70 86 107

Figure S13.  Get High-res Image Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
FAM58A MUTATED 4 1 1
FAM58A WILD-TYPE 129 107 27
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IDH1 MUTATED 4 7 4
IDH1 WILD-TYPE 72 102 101
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IDH1 MUTATED 9 4 2
IDH1 WILD-TYPE 89 112 74
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
IDH1 MUTATED 1 4 1 2
IDH1 WILD-TYPE 46 54 25 36
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IDH1 MUTATED 0 5 2 1
IDH1 WILD-TYPE 27 53 33 48
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IDH1 MUTATED 7 5 3
IDH1 WILD-TYPE 96 81 98
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IDH1 MUTATED 5 3 3 4
IDH1 WILD-TYPE 78 78 75 44
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.9

Table S147.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IDH1 MUTATED 3 2 0 9 0
IDH1 WILD-TYPE 38 77 68 77 6

Figure S14.  Get High-res Image Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IDH1 MUTATED 4 6 1 3
IDH1 WILD-TYPE 75 104 54 33
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IDH1 MUTATED 3 2 9
IDH1 WILD-TYPE 72 84 99
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IDH1 MUTATED 9 2 3
IDH1 WILD-TYPE 124 106 25
'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DMC1 MUTATED 4 5 2
DMC1 WILD-TYPE 72 104 103
'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DMC1 MUTATED 4 6 1
DMC1 WILD-TYPE 94 110 75
'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DMC1 MUTATED 5 2 1 0
DMC1 WILD-TYPE 42 56 25 38
'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DMC1 MUTATED 3 2 2 1
DMC1 WILD-TYPE 24 56 33 48
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.8

Table S155.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DMC1 MUTATED 0 4 7
DMC1 WILD-TYPE 103 82 94

Figure S15.  Get High-res Image Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DMC1 MUTATED 2 5 4 0
DMC1 WILD-TYPE 81 76 74 48
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.8

Table S157.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DMC1 MUTATED 1 8 2 0 0
DMC1 WILD-TYPE 40 71 66 86 6

Figure S16.  Get High-res Image Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DMC1 MUTATED 2 5 3 1
DMC1 WILD-TYPE 77 105 52 35
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.62

Table S159.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DMC1 MUTATED 1 8 1
DMC1 WILD-TYPE 74 78 107

Figure S17.  Get High-res Image Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.3

Table S160.  Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DMC1 MUTATED 0 9 1
DMC1 WILD-TYPE 133 99 27

Figure S18.  Get High-res Image Gene #16: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CYP3A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CYP3A5 MUTATED 4 4 5
CYP3A5 WILD-TYPE 72 105 100
'CYP3A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CYP3A5 MUTATED 5 7 1
CYP3A5 WILD-TYPE 93 109 75
'CYP3A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CYP3A5 MUTATED 3 0 1 2
CYP3A5 WILD-TYPE 44 58 25 36
'CYP3A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CYP3A5 MUTATED 2 0 1 3
CYP3A5 WILD-TYPE 25 58 34 46
'CYP3A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CYP3A5 MUTATED 7 3 3
CYP3A5 WILD-TYPE 96 83 98
'CYP3A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CYP3A5 MUTATED 6 3 3 1
CYP3A5 WILD-TYPE 77 78 75 47
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CYP3A5 MUTATED 1 3 5 3 0
CYP3A5 WILD-TYPE 40 76 63 83 6
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CYP3A5 MUTATED 5 5 1 1
CYP3A5 WILD-TYPE 74 105 54 35
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S169.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CYP3A5 MUTATED 4 2 5
CYP3A5 WILD-TYPE 71 84 103
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CYP3A5 MUTATED 6 5 0
CYP3A5 WILD-TYPE 127 103 28
'SLC38A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SLC38A4 MUTATED 13 13 7
SLC38A4 WILD-TYPE 63 96 98
'SLC38A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SLC38A4 MUTATED 10 18 5
SLC38A4 WILD-TYPE 88 98 71
'SLC38A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SLC38A4 MUTATED 6 6 4 2
SLC38A4 WILD-TYPE 41 52 22 36
'SLC38A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SLC38A4 MUTATED 3 5 3 7
SLC38A4 WILD-TYPE 24 53 32 42
'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00462 (Fisher's exact test), Q value = 0.55

Table S175.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SLC38A4 MUTATED 9 18 6
SLC38A4 WILD-TYPE 94 68 95

Figure S19.  Get High-res Image Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SLC38A4 MUTATED 6 11 6 10
SLC38A4 WILD-TYPE 77 70 72 38
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SLC38A4 MUTATED 5 9 8 9 0
SLC38A4 WILD-TYPE 36 70 60 77 6
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SLC38A4 MUTATED 11 10 6 4
SLC38A4 WILD-TYPE 68 100 49 32
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SLC38A4 MUTATED 11 8 10
SLC38A4 WILD-TYPE 64 78 98
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SLC38A4 MUTATED 17 8 4
SLC38A4 WILD-TYPE 116 100 24
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDX3X MUTATED 2 9 9
DDX3X WILD-TYPE 74 100 96
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDX3X MUTATED 7 8 5
DDX3X WILD-TYPE 91 108 71
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 42 54 25 33
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 22 54 34 44
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDX3X MUTATED 6 8 6
DDX3X WILD-TYPE 97 78 95
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDX3X MUTATED 8 5 3 4
DDX3X WILD-TYPE 75 76 75 44
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DDX3X MUTATED 4 6 4 6 0
DDX3X WILD-TYPE 37 73 64 80 6
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DDX3X MUTATED 6 9 1 4
DDX3X WILD-TYPE 73 101 54 32
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DDX3X MUTATED 4 6 9
DDX3X WILD-TYPE 71 80 99
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DDX3X MUTATED 11 6 2
DDX3X WILD-TYPE 122 102 26
'DSG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DSG3 MUTATED 15 18 15
DSG3 WILD-TYPE 61 91 90
'DSG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DSG3 MUTATED 17 18 13
DSG3 WILD-TYPE 81 98 63
'DSG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DSG3 MUTATED 7 6 4 12
DSG3 WILD-TYPE 40 52 22 26
'DSG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DSG3 MUTATED 5 10 4 10
DSG3 WILD-TYPE 22 48 31 39
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DSG3 MUTATED 18 13 17
DSG3 WILD-TYPE 85 73 84
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DSG3 MUTATED 15 13 12 8
DSG3 WILD-TYPE 68 68 66 40
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DSG3 MUTATED 4 13 11 18 1
DSG3 WILD-TYPE 37 66 57 68 5
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DSG3 MUTATED 15 18 10 4
DSG3 WILD-TYPE 64 92 45 32
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DSG3 MUTATED 17 9 19
DSG3 WILD-TYPE 58 77 89
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'DSG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DSG3 MUTATED 25 17 3
DSG3 WILD-TYPE 108 91 25
'S100A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
S100A8 MUTATED 3 4 1
S100A8 WILD-TYPE 73 105 104
'S100A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
S100A8 MUTATED 3 4 1
S100A8 WILD-TYPE 95 112 75
'S100A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
S100A8 MUTATED 3 0 0 3
S100A8 WILD-TYPE 44 58 26 35
'S100A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.94

Table S204.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
S100A8 MUTATED 3 3 0 0
S100A8 WILD-TYPE 24 55 35 49

Figure S20.  Get High-res Image Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'S100A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
S100A8 MUTATED 4 2 2
S100A8 WILD-TYPE 99 84 99
'S100A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
S100A8 MUTATED 3 1 2 2
S100A8 WILD-TYPE 80 80 76 46
'S100A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
S100A8 MUTATED 1 3 2 2 0
S100A8 WILD-TYPE 40 76 66 84 6
'S100A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
S100A8 MUTATED 1 3 3 1
S100A8 WILD-TYPE 78 107 52 35
'S100A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
S100A8 MUTATED 2 3 1
S100A8 WILD-TYPE 73 83 107
'S100A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'S100A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
S100A8 MUTATED 2 3 1
S100A8 WILD-TYPE 131 105 27
'RPGRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RPGRIP1 MUTATED 8 13 6
RPGRIP1 WILD-TYPE 68 96 99
'RPGRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RPGRIP1 MUTATED 10 8 9
RPGRIP1 WILD-TYPE 88 108 67
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RPGRIP1 MUTATED 6 4 3 1
RPGRIP1 WILD-TYPE 41 54 23 37
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RPGRIP1 MUTATED 4 3 2 5
RPGRIP1 WILD-TYPE 23 55 33 44
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RPGRIP1 MUTATED 13 7 7
RPGRIP1 WILD-TYPE 90 79 94
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RPGRIP1 MUTATED 13 8 4 2
RPGRIP1 WILD-TYPE 70 73 74 46
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RPGRIP1 MUTATED 2 6 7 12 0
RPGRIP1 WILD-TYPE 39 73 61 74 6
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RPGRIP1 MUTATED 11 12 3 1
RPGRIP1 WILD-TYPE 68 98 52 35
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.95

Table S219.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RPGRIP1 MUTATED 8 3 15
RPGRIP1 WILD-TYPE 67 83 93

Figure S21.  Get High-res Image Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.9

Table S220.  Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RPGRIP1 MUTATED 19 7 0
RPGRIP1 WILD-TYPE 114 101 28

Figure S22.  Get High-res Image Gene #22: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OXA1L MUTATED 3 2 3
OXA1L WILD-TYPE 73 107 102
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OXA1L MUTATED 4 2 2
OXA1L WILD-TYPE 94 114 74
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
OXA1L MUTATED 1 2 1 1
OXA1L WILD-TYPE 46 56 25 37
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OXA1L MUTATED 0 1 1 3
OXA1L WILD-TYPE 27 57 34 46
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OXA1L MUTATED 4 3 1
OXA1L WILD-TYPE 99 83 100
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OXA1L MUTATED 3 2 1 2
OXA1L WILD-TYPE 80 79 77 46
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
OXA1L MUTATED 2 1 3 2 0
OXA1L WILD-TYPE 39 78 65 84 6
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
OXA1L MUTATED 4 3 0 1
OXA1L WILD-TYPE 75 107 55 35
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
OXA1L MUTATED 3 0 5
OXA1L WILD-TYPE 72 86 103
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
OXA1L MUTATED 6 1 1
OXA1L WILD-TYPE 127 107 27
'NBPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NBPF1 MUTATED 9 9 8
NBPF1 WILD-TYPE 67 100 97
'NBPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NBPF1 MUTATED 13 7 6
NBPF1 WILD-TYPE 85 109 70
'NBPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.94

Table S233.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NBPF1 MUTATED 6 3 1 9
NBPF1 WILD-TYPE 41 55 25 29

Figure S23.  Get High-res Image Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NBPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NBPF1 MUTATED 3 9 3 4
NBPF1 WILD-TYPE 24 49 32 45
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NBPF1 MUTATED 13 7 6
NBPF1 WILD-TYPE 90 79 95
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NBPF1 MUTATED 11 7 5 3
NBPF1 WILD-TYPE 72 74 73 45
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NBPF1 MUTATED 4 4 8 9 0
NBPF1 WILD-TYPE 37 75 60 77 6
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NBPF1 MUTATED 9 7 6 3
NBPF1 WILD-TYPE 70 103 49 33
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NBPF1 MUTATED 10 4 11
NBPF1 WILD-TYPE 65 82 97
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NBPF1 MUTATED 14 8 3
NBPF1 WILD-TYPE 119 100 25
'PDE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PDE1A MUTATED 13 14 13
PDE1A WILD-TYPE 63 95 92
'PDE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PDE1A MUTATED 16 15 9
PDE1A WILD-TYPE 82 101 67
'PDE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PDE1A MUTATED 7 8 6 7
PDE1A WILD-TYPE 40 50 20 31
'PDE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PDE1A MUTATED 6 7 6 9
PDE1A WILD-TYPE 21 51 29 40
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.94

Table S245.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PDE1A MUTATED 16 17 7
PDE1A WILD-TYPE 87 69 94

Figure S24.  Get High-res Image Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PDE1A MUTATED 15 10 5 10
PDE1A WILD-TYPE 68 71 73 38
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PDE1A MUTATED 6 10 8 15 0
PDE1A WILD-TYPE 35 69 60 71 6
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PDE1A MUTATED 11 21 3 4
PDE1A WILD-TYPE 68 89 52 32
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PDE1A MUTATED 12 11 16
PDE1A WILD-TYPE 63 75 92
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'PDE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PDE1A MUTATED 22 13 4
PDE1A WILD-TYPE 111 95 24
'GML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.93

Table S251.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GML MUTATED 7 2 2
GML WILD-TYPE 69 107 103

Figure S25.  Get High-res Image Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GML MUTATED 3 4 4
GML WILD-TYPE 95 112 72
'GML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GML MUTATED 1 3 1 1
GML WILD-TYPE 46 55 25 37
'GML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GML MUTATED 0 2 0 4
GML WILD-TYPE 27 56 35 45
'GML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GML MUTATED 5 2 4
GML WILD-TYPE 98 84 97
'GML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GML MUTATED 4 2 2 3
GML WILD-TYPE 79 79 76 45
'GML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GML MUTATED 0 2 3 6 0
GML WILD-TYPE 41 77 65 80 6
'GML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GML MUTATED 4 5 2 0
GML WILD-TYPE 75 105 53 36
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S259.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GML MUTATED 5 2 4
GML WILD-TYPE 70 84 104
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'GML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GML MUTATED 8 3 0
GML WILD-TYPE 125 105 28
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RQCD1 MUTATED 4 1 4
RQCD1 WILD-TYPE 72 108 101
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RQCD1 MUTATED 5 1 3
RQCD1 WILD-TYPE 93 115 73
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RQCD1 MUTATED 0 3 2 0
RQCD1 WILD-TYPE 47 55 24 38
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RQCD1 MUTATED 0 2 1 2
RQCD1 WILD-TYPE 27 56 34 47
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RQCD1 MUTATED 5 2 2
RQCD1 WILD-TYPE 98 84 99
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RQCD1 MUTATED 3 3 2 1
RQCD1 WILD-TYPE 80 78 76 47
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RQCD1 MUTATED 1 1 4 3 0
RQCD1 WILD-TYPE 40 78 64 83 6
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RQCD1 MUTATED 1 5 2 1
RQCD1 WILD-TYPE 78 105 53 35
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S269.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RQCD1 MUTATED 0 2 7
RQCD1 WILD-TYPE 75 84 101
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RQCD1 MUTATED 5 3 1
RQCD1 WILD-TYPE 128 105 27
'TRERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.94

Table S271.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TRERF1 MUTATED 7 15 4
TRERF1 WILD-TYPE 69 94 101

Figure S26.  Get High-res Image Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TRERF1 MUTATED 10 12 4
TRERF1 WILD-TYPE 88 104 72
'TRERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TRERF1 MUTATED 7 8 0 4
TRERF1 WILD-TYPE 40 50 26 34
'TRERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TRERF1 MUTATED 3 8 4 4
TRERF1 WILD-TYPE 24 50 31 45
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TRERF1 MUTATED 8 12 6
TRERF1 WILD-TYPE 95 74 95
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TRERF1 MUTATED 6 12 3 5
TRERF1 WILD-TYPE 77 69 75 43
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TRERF1 MUTATED 3 4 8 10 0
TRERF1 WILD-TYPE 38 75 60 76 6
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TRERF1 MUTATED 5 12 6 2
TRERF1 WILD-TYPE 74 98 49 34
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TRERF1 MUTATED 10 3 10
TRERF1 WILD-TYPE 65 83 98
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TRERF1 MUTATED 14 8 1
TRERF1 WILD-TYPE 119 100 27
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C1QTNF9 MUTATED 4 8 4
C1QTNF9 WILD-TYPE 72 101 101
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C1QTNF9 MUTATED 5 8 3
C1QTNF9 WILD-TYPE 93 108 73
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
C1QTNF9 MUTATED 2 5 2 1
C1QTNF9 WILD-TYPE 45 53 24 37
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C1QTNF9 MUTATED 1 4 3 2
C1QTNF9 WILD-TYPE 26 54 32 47
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S285.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C1QTNF9 MUTATED 6 5 5
C1QTNF9 WILD-TYPE 97 81 96
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C1QTNF9 MUTATED 3 5 3 5
C1QTNF9 WILD-TYPE 80 76 75 43
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
C1QTNF9 MUTATED 1 6 4 3 1
C1QTNF9 WILD-TYPE 40 73 64 83 5
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S288.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
C1QTNF9 MUTATED 3 7 5 0
C1QTNF9 WILD-TYPE 76 103 50 36
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S289.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
C1QTNF9 MUTATED 5 5 5
C1QTNF9 WILD-TYPE 70 81 103
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
C1QTNF9 MUTATED 7 8 0
C1QTNF9 WILD-TYPE 126 100 28
'KRTAP5-10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KRTAP5-10 MUTATED 2 2 6
KRTAP5-10 WILD-TYPE 74 107 99
'KRTAP5-10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KRTAP5-10 MUTATED 3 3 4
KRTAP5-10 WILD-TYPE 95 113 72
'KRTAP5-10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KRTAP5-10 MUTATED 2 2 0 1
KRTAP5-10 WILD-TYPE 45 56 26 37
'KRTAP5-10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KRTAP5-10 MUTATED 0 4 1 0
KRTAP5-10 WILD-TYPE 27 54 34 49
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KRTAP5-10 MUTATED 2 4 4
KRTAP5-10 WILD-TYPE 101 82 97
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KRTAP5-10 MUTATED 3 3 4 0
KRTAP5-10 WILD-TYPE 80 78 74 48
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KRTAP5-10 MUTATED 0 2 3 4 1
KRTAP5-10 WILD-TYPE 41 77 65 82 5
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.94

Table S298.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KRTAP5-10 MUTATED 0 6 4 0
KRTAP5-10 WILD-TYPE 79 104 51 36

Figure S27.  Get High-res Image Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S299.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KRTAP5-10 MUTATED 4 2 4
KRTAP5-10 WILD-TYPE 71 84 104
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KRTAP5-10 MUTATED 5 5 0
KRTAP5-10 WILD-TYPE 128 103 28
'KEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.8

Table S301.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KEL MUTATED 10 20 6
KEL WILD-TYPE 66 89 99

Figure S28.  Get High-res Image Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KEL MUTATED 12 18 6
KEL WILD-TYPE 86 98 70
'KEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S303.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KEL MUTATED 5 8 3 7
KEL WILD-TYPE 42 50 23 31
'KEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KEL MUTATED 3 6 5 9
KEL WILD-TYPE 24 52 30 40
'KEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.52

Table S305.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KEL MUTATED 17 15 4
KEL WILD-TYPE 86 71 97

Figure S29.  Get High-res Image Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 1

Table S306.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KEL MUTATED 13 10 4 9
KEL WILD-TYPE 70 71 74 39
'KEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S307.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KEL MUTATED 7 7 5 14 0
KEL WILD-TYPE 34 72 63 72 6
'KEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KEL MUTATED 11 12 4 6
KEL WILD-TYPE 68 98 51 30
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KEL MUTATED 12 8 13
KEL WILD-TYPE 63 78 95
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S310.  Gene #31: 'KEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KEL MUTATED 21 8 4
KEL WILD-TYPE 112 100 24
'GAGE2D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GAGE2D MUTATED 1 1 2
GAGE2D WILD-TYPE 75 108 103
'GAGE2D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GAGE2D MUTATED 1 1 2
GAGE2D WILD-TYPE 97 115 74
'GAGE2D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GAGE2D MUTATED 2 1 1
GAGE2D WILD-TYPE 101 85 100
'GAGE2D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GAGE2D MUTATED 2 0 1 1
GAGE2D WILD-TYPE 81 81 77 47
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S315.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GAGE2D MUTATED 1 1 0 2 0
GAGE2D WILD-TYPE 40 78 68 84 6
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S316.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GAGE2D MUTATED 0 3 0 1
GAGE2D WILD-TYPE 79 107 55 35
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GAGE2D MUTATED 0 2 2
GAGE2D WILD-TYPE 75 84 106
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GAGE2D MUTATED 2 1 1
GAGE2D WILD-TYPE 131 107 27
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.076

Table S319.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BRAF MUTATED 23 51 71
BRAF WILD-TYPE 53 58 34

Figure S30.  Get High-res Image Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.8

Table S320.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BRAF MUTATED 47 69 29
BRAF WILD-TYPE 51 47 47

Figure S31.  Get High-res Image Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
BRAF MUTATED 26 24 14 21
BRAF WILD-TYPE 21 34 12 17
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BRAF MUTATED 13 25 20 27
BRAF WILD-TYPE 14 33 15 22
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.55

Table S323.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BRAF MUTATED 40 43 62
BRAF WILD-TYPE 63 43 39

Figure S32.  Get High-res Image Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.089

Table S324.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BRAF MUTATED 26 43 53 23
BRAF WILD-TYPE 57 38 25 25

Figure S33.  Get High-res Image Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.21

Table S325.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
BRAF MUTATED 26 46 24 37 6
BRAF WILD-TYPE 15 33 44 49 0

Figure S34.  Get High-res Image Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
BRAF MUTATED 33 56 27 23
BRAF WILD-TYPE 46 54 28 13
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.16

Table S327.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
BRAF MUTATED 41 55 38
BRAF WILD-TYPE 34 31 70

Figure S35.  Get High-res Image Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
BRAF MUTATED 57 61 16
BRAF WILD-TYPE 76 47 12
'PARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S329.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PARM1 MUTATED 6 8 5
PARM1 WILD-TYPE 70 101 100
'PARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S330.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PARM1 MUTATED 6 8 5
PARM1 WILD-TYPE 92 108 71
'PARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PARM1 MUTATED 5 3 4 2
PARM1 WILD-TYPE 42 55 22 36
'PARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PARM1 MUTATED 4 6 1 3
PARM1 WILD-TYPE 23 52 34 46
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PARM1 MUTATED 6 6 7
PARM1 WILD-TYPE 97 80 94
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PARM1 MUTATED 5 8 6 0
PARM1 WILD-TYPE 78 73 72 48
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S335.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PARM1 MUTATED 3 8 2 5 0
PARM1 WILD-TYPE 38 71 66 81 6
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S336.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PARM1 MUTATED 2 8 5 3
PARM1 WILD-TYPE 77 102 50 33
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S337.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PARM1 MUTATED 4 7 7
PARM1 WILD-TYPE 71 79 101
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S338.  Gene #34: 'PARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PARM1 MUTATED 6 9 3
PARM1 WILD-TYPE 127 99 25
'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S339.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KYNU MUTATED 4 5 7
KYNU WILD-TYPE 72 104 98
'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S340.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KYNU MUTATED 6 6 4
KYNU WILD-TYPE 92 110 72
'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KYNU MUTATED 2 2 2 2
KYNU WILD-TYPE 45 56 24 36
'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KYNU MUTATED 1 4 1 2
KYNU WILD-TYPE 26 54 34 47
'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S343.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KYNU MUTATED 5 3 8
KYNU WILD-TYPE 98 83 93
'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KYNU MUTATED 4 5 7 0
KYNU WILD-TYPE 79 76 71 48
'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S345.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KYNU MUTATED 2 5 4 3 1
KYNU WILD-TYPE 39 74 64 83 5
'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KYNU MUTATED 3 7 3 2
KYNU WILD-TYPE 76 103 52 34
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KYNU MUTATED 5 6 4
KYNU WILD-TYPE 70 80 104
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KYNU MUTATED 6 7 2
KYNU WILD-TYPE 127 101 26
'PTGIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S349.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTGIS MUTATED 5 6 5
PTGIS WILD-TYPE 71 103 100
'PTGIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S350.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTGIS MUTATED 9 5 2
PTGIS WILD-TYPE 89 111 74
'PTGIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PTGIS MUTATED 3 1 1 3
PTGIS WILD-TYPE 44 57 25 35
'PTGIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTGIS MUTATED 2 1 2 3
PTGIS WILD-TYPE 25 57 33 46
'PTGIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTGIS MUTATED 8 6 2
PTGIS WILD-TYPE 95 80 99
'PTGIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTGIS MUTATED 6 4 2 4
PTGIS WILD-TYPE 77 77 76 44
'PTGIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PTGIS MUTATED 0 4 4 8 0
PTGIS WILD-TYPE 41 75 64 78 6
'PTGIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PTGIS MUTATED 5 8 3 0
PTGIS WILD-TYPE 74 102 52 36
'PTGIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PTGIS MUTATED 6 3 7
PTGIS WILD-TYPE 69 83 101
'PTGIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'PTGIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PTGIS MUTATED 11 5 0
PTGIS WILD-TYPE 122 103 28
'KIAA1257 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S359.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KIAA1257 MUTATED 1 5 7
KIAA1257 WILD-TYPE 75 104 98
'KIAA1257 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S360.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KIAA1257 MUTATED 3 5 5
KIAA1257 WILD-TYPE 95 111 71
'KIAA1257 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KIAA1257 MUTATED 2 3 2 3
KIAA1257 WILD-TYPE 45 55 24 35
'KIAA1257 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KIAA1257 MUTATED 1 3 2 4
KIAA1257 WILD-TYPE 26 55 33 45
'KIAA1257 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S363.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KIAA1257 MUTATED 4 5 4
KIAA1257 WILD-TYPE 99 81 97
'KIAA1257 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KIAA1257 MUTATED 3 5 2 3
KIAA1257 WILD-TYPE 80 76 76 45
'KIAA1257 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KIAA1257 MUTATED 0 3 4 6 0
KIAA1257 WILD-TYPE 41 76 64 80 6
'KIAA1257 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KIAA1257 MUTATED 3 7 3 0
KIAA1257 WILD-TYPE 76 103 52 36
'KIAA1257 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S367.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KIAA1257 MUTATED 5 3 5
KIAA1257 WILD-TYPE 70 83 103
'KIAA1257 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S368.  Gene #37: 'KIAA1257 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KIAA1257 MUTATED 10 3 0
KIAA1257 WILD-TYPE 123 105 28
'CCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S369.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CCK MUTATED 3 1 2
CCK WILD-TYPE 73 108 103
'CCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S370.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CCK MUTATED 1 4 1
CCK WILD-TYPE 97 112 75
'CCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 44 57 26 38
'CCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.8

Table S372.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 24 57 35 49

Figure S36.  Get High-res Image Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CCK MUTATED 1 3 2
CCK WILD-TYPE 102 83 99
'CCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CCK MUTATED 2 2 2 0
CCK WILD-TYPE 81 79 76 48
'CCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CCK MUTATED 1 3 1 1 0
CCK WILD-TYPE 40 76 67 85 6
'CCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CCK MUTATED 2 2 1 1
CCK WILD-TYPE 77 108 54 35
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CCK MUTATED 2 2 2
CCK WILD-TYPE 73 84 106
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'CCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CCK MUTATED 3 2 1
CCK WILD-TYPE 130 106 27
'ZNF780B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S379.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF780B MUTATED 2 7 1
ZNF780B WILD-TYPE 74 102 104
'ZNF780B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S380.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF780B MUTATED 4 5 1
ZNF780B WILD-TYPE 94 111 75
'ZNF780B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S381.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ZNF780B MUTATED 1 5 0 1
ZNF780B WILD-TYPE 46 53 26 37
'ZNF780B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZNF780B MUTATED 1 4 0 2
ZNF780B WILD-TYPE 26 54 35 47
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S383.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF780B MUTATED 4 4 2
ZNF780B WILD-TYPE 99 82 99
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF780B MUTATED 3 4 1 2
ZNF780B WILD-TYPE 80 77 77 46
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZNF780B MUTATED 2 3 3 1 0
ZNF780B WILD-TYPE 39 76 65 85 6
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S386.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZNF780B MUTATED 2 5 1 1
ZNF780B WILD-TYPE 77 105 54 35
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S387.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZNF780B MUTATED 3 2 4
ZNF780B WILD-TYPE 72 84 104
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZNF780B MUTATED 4 4 1
ZNF780B WILD-TYPE 129 104 27
'RICTOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S389.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RICTOR MUTATED 6 4 2
RICTOR WILD-TYPE 70 105 103
'RICTOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S390.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RICTOR MUTATED 5 5 2
RICTOR WILD-TYPE 93 111 74
'RICTOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RICTOR MUTATED 2 2 1 3
RICTOR WILD-TYPE 45 56 25 35
'RICTOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S392.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RICTOR MUTATED 1 3 3 1
RICTOR WILD-TYPE 26 55 32 48
'RICTOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RICTOR MUTATED 4 5 3
RICTOR WILD-TYPE 99 81 98
'RICTOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RICTOR MUTATED 4 4 2 2
RICTOR WILD-TYPE 79 77 76 46
'RICTOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RICTOR MUTATED 0 4 3 4 0
RICTOR WILD-TYPE 41 75 65 82 6
'RICTOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RICTOR MUTATED 3 6 2 0
RICTOR WILD-TYPE 76 104 53 36
'RICTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S397.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RICTOR MUTATED 5 2 4
RICTOR WILD-TYPE 70 84 104
'RICTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'RICTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RICTOR MUTATED 6 5 0
RICTOR WILD-TYPE 127 103 28
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S399.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
STK19 MUTATED 5 5 4
STK19 WILD-TYPE 71 104 101
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 0.95

Table S400.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
STK19 MUTATED 6 8 0
STK19 WILD-TYPE 92 108 76

Figure S37.  Get High-res Image Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S401.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
STK19 MUTATED 2 0 2 2
STK19 WILD-TYPE 45 58 24 36
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S402.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
STK19 MUTATED 0 3 1 2
STK19 WILD-TYPE 27 55 34 47
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
STK19 MUTATED 5 5 4
STK19 WILD-TYPE 98 81 97
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
STK19 MUTATED 3 6 2 3
STK19 WILD-TYPE 80 75 76 45
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S405.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
STK19 MUTATED 0 2 5 6 0
STK19 WILD-TYPE 41 77 63 80 6
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
STK19 MUTATED 3 7 3 0
STK19 WILD-TYPE 76 103 52 36
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S407.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
STK19 MUTATED 3 3 7
STK19 WILD-TYPE 72 83 101
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
STK19 MUTATED 9 4 0
STK19 WILD-TYPE 124 104 28
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S409.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ALPK2 MUTATED 10 22 15
ALPK2 WILD-TYPE 66 87 90
'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S410.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ALPK2 MUTATED 19 19 9
ALPK2 WILD-TYPE 79 97 67
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ALPK2 MUTATED 12 10 3 4
ALPK2 WILD-TYPE 35 48 23 34
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S412.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ALPK2 MUTATED 5 10 5 9
ALPK2 WILD-TYPE 22 48 30 40
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ALPK2 MUTATED 15 18 14
ALPK2 WILD-TYPE 88 68 87
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ALPK2 MUTATED 13 14 12 8
ALPK2 WILD-TYPE 70 67 66 40
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ALPK2 MUTATED 7 11 13 14 0
ALPK2 WILD-TYPE 34 68 55 72 6
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ALPK2 MUTATED 9 21 8 7
ALPK2 WILD-TYPE 70 89 47 29
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S417.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ALPK2 MUTATED 12 12 20
ALPK2 WILD-TYPE 63 74 88
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ALPK2 MUTATED 20 19 5
ALPK2 WILD-TYPE 113 89 23
'PKDREJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S419.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PKDREJ MUTATED 7 12 11
PKDREJ WILD-TYPE 69 97 94
'PKDREJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S420.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PKDREJ MUTATED 8 15 7
PKDREJ WILD-TYPE 90 101 69
'PKDREJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S421.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PKDREJ MUTATED 6 7 3 3
PKDREJ WILD-TYPE 41 51 23 35
'PKDREJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S422.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PKDREJ MUTATED 3 6 5 5
PKDREJ WILD-TYPE 24 52 30 44
'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PKDREJ MUTATED 7 11 12
PKDREJ WILD-TYPE 96 75 89
'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PKDREJ MUTATED 10 9 8 3
PKDREJ WILD-TYPE 73 72 70 45
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S425.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PKDREJ MUTATED 3 5 11 9 1
PKDREJ WILD-TYPE 38 74 57 77 5
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PKDREJ MUTATED 9 12 6 2
PKDREJ WILD-TYPE 70 98 49 34
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S427.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PKDREJ MUTATED 8 4 14
PKDREJ WILD-TYPE 67 82 94
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S428.  Gene #43: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PKDREJ MUTATED 14 10 2
PKDREJ WILD-TYPE 119 98 26
'MMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S429.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MMP1 MUTATED 1 7 6
MMP1 WILD-TYPE 75 102 99
'MMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S430.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MMP1 MUTATED 8 3 3
MMP1 WILD-TYPE 90 113 73
'MMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S431.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MMP1 MUTATED 1 2 0 2
MMP1 WILD-TYPE 46 56 26 36
'MMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S432.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MMP1 MUTATED 1 1 1 2
MMP1 WILD-TYPE 26 57 34 47
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S433.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MMP1 MUTATED 6 3 5
MMP1 WILD-TYPE 97 83 96
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MMP1 MUTATED 5 2 4 3
MMP1 WILD-TYPE 78 79 74 45
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S435.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MMP1 MUTATED 0 5 5 4 0
MMP1 WILD-TYPE 41 74 63 82 6
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S436.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MMP1 MUTATED 1 10 3 0
MMP1 WILD-TYPE 78 100 52 36

Figure S38.  Get High-res Image Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MMP1 MUTATED 4 4 5
MMP1 WILD-TYPE 71 82 103
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'MMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MMP1 MUTATED 6 7 0
MMP1 WILD-TYPE 127 101 28
'SLC27A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S439.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SLC27A5 MUTATED 4 4 2
SLC27A5 WILD-TYPE 72 105 103
'SLC27A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S440.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SLC27A5 MUTATED 6 2 2
SLC27A5 WILD-TYPE 92 114 74
'SLC27A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S441.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SLC27A5 MUTATED 0 3 0 1
SLC27A5 WILD-TYPE 47 55 26 37
'SLC27A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S442.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SLC27A5 MUTATED 0 2 0 2
SLC27A5 WILD-TYPE 27 56 35 47
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SLC27A5 MUTATED 5 2 3
SLC27A5 WILD-TYPE 98 84 98
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SLC27A5 MUTATED 2 4 3 1
SLC27A5 WILD-TYPE 81 77 75 47
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.94

Table S445.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SLC27A5 MUTATED 4 1 2 1 1
SLC27A5 WILD-TYPE 37 78 66 85 5

Figure S39.  Get High-res Image Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S446.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SLC27A5 MUTATED 1 4 2 2
SLC27A5 WILD-TYPE 78 106 53 34
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S447.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SLC27A5 MUTATED 2 1 6
SLC27A5 WILD-TYPE 73 85 102
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SLC27A5 MUTATED 5 2 2
SLC27A5 WILD-TYPE 128 106 26
'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S449.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NGF MUTATED 5 3 1
NGF WILD-TYPE 71 106 104
'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S450.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NGF MUTATED 4 3 2
NGF WILD-TYPE 94 113 74
'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NGF MUTATED 4 1 0 0
NGF WILD-TYPE 43 57 26 38
'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NGF MUTATED 1 2 1 1
NGF WILD-TYPE 26 56 34 48
'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NGF MUTATED 2 3 4
NGF WILD-TYPE 101 83 97
'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NGF MUTATED 3 3 3 0
NGF WILD-TYPE 80 78 75 48
'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NGF MUTATED 1 3 1 3 0
NGF WILD-TYPE 40 76 67 83 6
'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NGF MUTATED 3 3 1 1
NGF WILD-TYPE 76 107 54 35
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NGF MUTATED 0 5 3
NGF WILD-TYPE 75 81 105
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S458.  Gene #46: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NGF MUTATED 5 2 1
NGF WILD-TYPE 128 106 27
'ATP5F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S459.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ATP5F1 MUTATED 2 3 1
ATP5F1 WILD-TYPE 74 106 104
'ATP5F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S460.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ATP5F1 MUTATED 3 3 0
ATP5F1 WILD-TYPE 95 113 76
'ATP5F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ATP5F1 MUTATED 1 0 1 3
ATP5F1 WILD-TYPE 46 58 25 35
'ATP5F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ATP5F1 MUTATED 1 2 0 2
ATP5F1 WILD-TYPE 26 56 35 47
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ATP5F1 MUTATED 2 3 1
ATP5F1 WILD-TYPE 101 83 100
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S464.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ATP5F1 MUTATED 2 1 1 2
ATP5F1 WILD-TYPE 81 80 77 46
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ATP5F1 MUTATED 0 2 2 2 0
ATP5F1 WILD-TYPE 41 77 66 84 6
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ATP5F1 MUTATED 1 4 1 0
ATP5F1 WILD-TYPE 78 106 54 36
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ATP5F1 MUTATED 3 1 2
ATP5F1 WILD-TYPE 72 85 106
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ATP5F1 MUTATED 4 2 0
ATP5F1 WILD-TYPE 129 106 28
'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.94

Table S469.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
POTEG MUTATED 13 8 6
POTEG WILD-TYPE 63 101 99

Figure S40.  Get High-res Image Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.95

Table S470.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
POTEG MUTATED 15 6 6
POTEG WILD-TYPE 83 110 70

Figure S41.  Get High-res Image Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S471.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
POTEG MUTATED 2 4 2 7
POTEG WILD-TYPE 45 54 24 31
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
POTEG MUTATED 2 6 4 3
POTEG WILD-TYPE 25 52 31 46
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
POTEG MUTATED 12 4 11
POTEG WILD-TYPE 91 82 90
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
POTEG MUTATED 11 7 7 2
POTEG WILD-TYPE 72 74 71 46
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 1

Table S475.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
POTEG MUTATED 2 9 2 13 0
POTEG WILD-TYPE 39 70 66 73 6
'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
POTEG MUTATED 7 14 3 2
POTEG WILD-TYPE 72 96 52 34
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
POTEG MUTATED 5 7 13
POTEG WILD-TYPE 70 79 95
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
POTEG MUTATED 14 9 2
POTEG WILD-TYPE 119 99 26
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 1

Table S479.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
XIRP2 MUTATED 30 41 27
XIRP2 WILD-TYPE 46 68 78
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S480.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
XIRP2 MUTATED 38 39 21
XIRP2 WILD-TYPE 60 77 55
'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
XIRP2 MUTATED 19 15 12 18
XIRP2 WILD-TYPE 28 43 14 20
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
XIRP2 MUTATED 10 20 12 22
XIRP2 WILD-TYPE 17 38 23 27
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
XIRP2 MUTATED 41 28 29
XIRP2 WILD-TYPE 62 58 72
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S484.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
XIRP2 MUTATED 31 21 24 22
XIRP2 WILD-TYPE 52 60 54 26
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
XIRP2 MUTATED 17 26 22 28 1
XIRP2 WILD-TYPE 24 53 46 58 5
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
XIRP2 MUTATED 27 34 19 14
XIRP2 WILD-TYPE 52 76 36 22
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S487.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
XIRP2 MUTATED 28 27 37
XIRP2 WILD-TYPE 47 59 71
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S488.  Gene #49: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
XIRP2 MUTATED 47 34 11
XIRP2 WILD-TYPE 86 74 17
'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S489.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
USH2A MUTATED 27 37 27
USH2A WILD-TYPE 49 72 78
'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S490.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
USH2A MUTATED 35 35 21
USH2A WILD-TYPE 63 81 55
'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
USH2A MUTATED 17 14 12 18
USH2A WILD-TYPE 30 44 14 20
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
USH2A MUTATED 10 20 11 20
USH2A WILD-TYPE 17 38 24 29
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S493.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
USH2A MUTATED 35 30 26
USH2A WILD-TYPE 68 56 75
'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S494.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
USH2A MUTATED 28 27 22 14
USH2A WILD-TYPE 55 54 56 34
'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
USH2A MUTATED 16 19 21 29 3
USH2A WILD-TYPE 25 60 47 57 3
'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S496.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
USH2A MUTATED 29 29 16 14
USH2A WILD-TYPE 50 81 39 22
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
USH2A MUTATED 28 21 36
USH2A WILD-TYPE 47 65 72
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S498.  Gene #50: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
USH2A MUTATED 47 28 10
USH2A WILD-TYPE 86 80 18
'THSD7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S499.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
THSD7B MUTATED 28 39 25
THSD7B WILD-TYPE 48 70 80
'THSD7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S500.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
THSD7B MUTATED 33 41 18
THSD7B WILD-TYPE 65 75 58
'THSD7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
THSD7B MUTATED 20 16 8 14
THSD7B WILD-TYPE 27 42 18 24
'THSD7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
THSD7B MUTATED 12 17 12 17
THSD7B WILD-TYPE 15 41 23 32
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
THSD7B MUTATED 32 31 29
THSD7B WILD-TYPE 71 55 72
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S504.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
THSD7B MUTATED 20 31 22 19
THSD7B WILD-TYPE 63 50 56 29
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S505.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
THSD7B MUTATED 13 31 16 28 1
THSD7B WILD-TYPE 28 48 52 58 5
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
THSD7B MUTATED 24 40 15 10
THSD7B WILD-TYPE 55 70 40 26
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
THSD7B MUTATED 18 29 39
THSD7B WILD-TYPE 57 57 69
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S508.  Gene #51: 'THSD7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
THSD7B MUTATED 44 34 8
THSD7B WILD-TYPE 89 74 20
'SAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S509.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SAG MUTATED 5 3 3
SAG WILD-TYPE 71 106 102
'SAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S510.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SAG MUTATED 3 6 2
SAG WILD-TYPE 95 110 74
'SAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SAG MUTATED 2 1 2 2
SAG WILD-TYPE 45 57 24 36
'SAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SAG MUTATED 3 1 2 1
SAG WILD-TYPE 24 57 33 48
'SAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SAG MUTATED 4 2 5
SAG WILD-TYPE 99 84 96
'SAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SAG MUTATED 3 2 5 1
SAG WILD-TYPE 80 79 73 47
'SAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SAG MUTATED 0 4 4 3 0
SAG WILD-TYPE 41 75 64 83 6
'SAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SAG MUTATED 2 4 5 0
SAG WILD-TYPE 77 106 50 36
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SAG MUTATED 4 3 4
SAG WILD-TYPE 71 83 104
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'SAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SAG MUTATED 4 7 0
SAG WILD-TYPE 129 101 28
'ZNF597 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S519.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF597 MUTATED 3 2 5
ZNF597 WILD-TYPE 73 107 100
'ZNF597 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S520.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF597 MUTATED 6 1 3
ZNF597 WILD-TYPE 92 115 73
'ZNF597 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ZNF597 MUTATED 2 2 0 2
ZNF597 WILD-TYPE 45 56 26 36
'ZNF597 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZNF597 MUTATED 1 4 0 1
ZNF597 WILD-TYPE 26 54 35 48
'ZNF597 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF597 MUTATED 4 2 4
ZNF597 WILD-TYPE 99 84 97
'ZNF597 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF597 MUTATED 5 0 3 2
ZNF597 WILD-TYPE 78 81 75 46
'ZNF597 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZNF597 MUTATED 1 3 4 2 0
ZNF597 WILD-TYPE 40 76 64 84 6
'ZNF597 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZNF597 MUTATED 2 6 1 1
ZNF597 WILD-TYPE 77 104 54 35
'ZNF597 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZNF597 MUTATED 2 2 6
ZNF597 WILD-TYPE 73 84 102
'ZNF597 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'ZNF597 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZNF597 MUTATED 6 3 1
ZNF597 WILD-TYPE 127 105 27
'PLCXD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S529.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PLCXD2 MUTATED 3 5 4
PLCXD2 WILD-TYPE 73 104 101
'PLCXD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S530.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PLCXD2 MUTATED 6 3 3
PLCXD2 WILD-TYPE 92 113 73
'PLCXD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S531.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PLCXD2 MUTATED 1 5 0 2
PLCXD2 WILD-TYPE 46 53 26 36
'PLCXD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S532.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PLCXD2 MUTATED 1 2 2 3
PLCXD2 WILD-TYPE 26 56 33 46
'PLCXD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PLCXD2 MUTATED 6 3 3
PLCXD2 WILD-TYPE 97 83 98
'PLCXD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PLCXD2 MUTATED 4 3 2 3
PLCXD2 WILD-TYPE 79 78 76 45
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S535.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PLCXD2 MUTATED 2 4 3 3 0
PLCXD2 WILD-TYPE 39 75 65 83 6
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S536.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PLCXD2 MUTATED 4 6 1 1
PLCXD2 WILD-TYPE 75 104 54 35
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PLCXD2 MUTATED 4 2 6
PLCXD2 WILD-TYPE 71 84 102
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PLCXD2 MUTATED 6 5 1
PLCXD2 WILD-TYPE 127 103 27
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S539.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MPP7 MUTATED 11 13 8
MPP7 WILD-TYPE 65 96 97
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 1

Table S540.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MPP7 MUTATED 17 10 5
MPP7 WILD-TYPE 81 106 71
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S541.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MPP7 MUTATED 5 10 1 4
MPP7 WILD-TYPE 42 48 25 34
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MPP7 MUTATED 4 9 1 6
MPP7 WILD-TYPE 23 49 34 43
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MPP7 MUTATED 16 9 7
MPP7 WILD-TYPE 87 77 94
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MPP7 MUTATED 14 8 5 5
MPP7 WILD-TYPE 69 73 73 43
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S545.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MPP7 MUTATED 5 9 8 9 0
MPP7 WILD-TYPE 36 70 60 77 6
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MPP7 MUTATED 8 13 6 4
MPP7 WILD-TYPE 71 97 49 32
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MPP7 MUTATED 7 9 13
MPP7 WILD-TYPE 68 77 95
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MPP7 MUTATED 14 11 4
MPP7 WILD-TYPE 119 97 24
'MMP27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S549.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MMP27 MUTATED 2 7 4
MMP27 WILD-TYPE 74 102 101
'MMP27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S550.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MMP27 MUTATED 5 4 4
MMP27 WILD-TYPE 93 112 72
'MMP27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S551.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MMP27 MUTATED 3 2 0 4
MMP27 WILD-TYPE 44 56 26 34
'MMP27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MMP27 MUTATED 1 3 2 3
MMP27 WILD-TYPE 26 55 33 46
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MMP27 MUTATED 5 4 4
MMP27 WILD-TYPE 98 82 97
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MMP27 MUTATED 4 3 4 2
MMP27 WILD-TYPE 79 78 74 46
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MMP27 MUTATED 2 5 1 4 0
MMP27 WILD-TYPE 39 74 67 82 6
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MMP27 MUTATED 2 5 3 2
MMP27 WILD-TYPE 77 105 52 34
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MMP27 MUTATED 2 5 4
MMP27 WILD-TYPE 73 81 104
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'MMP27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MMP27 MUTATED 4 6 1
MMP27 WILD-TYPE 129 102 27
'CHRNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S559.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CHRNA3 MUTATED 3 8 3
CHRNA3 WILD-TYPE 73 101 102
'CHRNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S560.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CHRNA3 MUTATED 5 7 2
CHRNA3 WILD-TYPE 93 109 74
'CHRNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CHRNA3 MUTATED 5 3 1 0
CHRNA3 WILD-TYPE 42 55 25 38
'CHRNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CHRNA3 MUTATED 2 2 1 4
CHRNA3 WILD-TYPE 25 56 34 45
'CHRNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CHRNA3 MUTATED 4 6 4
CHRNA3 WILD-TYPE 99 80 97
'CHRNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S564.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CHRNA3 MUTATED 3 6 3 2
CHRNA3 WILD-TYPE 80 75 75 46
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CHRNA3 MUTATED 2 5 4 2 0
CHRNA3 WILD-TYPE 39 74 64 84 6
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CHRNA3 MUTATED 4 7 1 1
CHRNA3 WILD-TYPE 75 103 54 35
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CHRNA3 MUTATED 2 5 5
CHRNA3 WILD-TYPE 73 81 103
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CHRNA3 MUTATED 5 6 1
CHRNA3 WILD-TYPE 128 102 27
'CD300E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S569.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD300E MUTATED 5 3 4
CD300E WILD-TYPE 71 106 101
'CD300E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S570.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD300E MUTATED 3 6 3
CD300E WILD-TYPE 95 110 73
'CD300E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CD300E MUTATED 1 4 1 2
CD300E WILD-TYPE 46 54 25 36
'CD300E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S572.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD300E MUTATED 0 3 2 3
CD300E WILD-TYPE 27 55 33 46
'CD300E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S573.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD300E MUTATED 2 4 6
CD300E WILD-TYPE 101 82 95
'CD300E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S574.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD300E MUTATED 3 5 4 0
CD300E WILD-TYPE 80 76 74 48
'CD300E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S575.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CD300E MUTATED 2 3 3 3 0
CD300E WILD-TYPE 39 76 65 83 6
'CD300E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S576.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CD300E MUTATED 1 5 3 2
CD300E WILD-TYPE 78 105 52 34
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CD300E MUTATED 5 3 3
CD300E WILD-TYPE 70 83 105
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'CD300E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CD300E MUTATED 4 5 2
CD300E WILD-TYPE 129 103 26
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S579.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 75 107 104
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S580.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IFNGR2 MUTATED 1 3 0
IFNGR2 WILD-TYPE 97 113 76
'IFNGR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
IFNGR2 MUTATED 2 1 0 0
IFNGR2 WILD-TYPE 45 57 26 38
'IFNGR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0694 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IFNGR2 MUTATED 2 0 0 1
IFNGR2 WILD-TYPE 25 58 35 48
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IFNGR2 MUTATED 2 2 0
IFNGR2 WILD-TYPE 101 84 101
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S584.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IFNGR2 MUTATED 3 0 1 0
IFNGR2 WILD-TYPE 80 81 77 48
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IFNGR2 MUTATED 0 2 1 1 0
IFNGR2 WILD-TYPE 41 77 67 85 6
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S586.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IFNGR2 MUTATED 3 0 1 0
IFNGR2 WILD-TYPE 76 110 54 36
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 74 84 107
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S588.  Gene #59: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IFNGR2 MUTATED 2 2 0
IFNGR2 WILD-TYPE 131 106 28
'MYPOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S589.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYPOP MUTATED 3 0 4
MYPOP WILD-TYPE 73 109 101
'MYPOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S590.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYPOP MUTATED 1 3 3
MYPOP WILD-TYPE 97 113 73
'MYPOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S591.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MYPOP MUTATED 1 1 1 1
MYPOP WILD-TYPE 46 57 25 37
'MYPOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYPOP MUTATED 1 0 1 2
MYPOP WILD-TYPE 26 58 34 47
'MYPOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYPOP MUTATED 2 2 3
MYPOP WILD-TYPE 101 84 98
'MYPOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYPOP MUTATED 2 1 3 1
MYPOP WILD-TYPE 81 80 75 47
'MYPOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MYPOP MUTATED 1 1 1 4 0
MYPOP WILD-TYPE 40 78 67 82 6
'MYPOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MYPOP MUTATED 1 4 0 2
MYPOP WILD-TYPE 78 106 55 34
'MYPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MYPOP MUTATED 0 2 5
MYPOP WILD-TYPE 75 84 103
'MYPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S598.  Gene #60: 'MYPOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MYPOP MUTATED 5 2 0
MYPOP WILD-TYPE 128 106 28
'KHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S599.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KHDC1 MUTATED 3 6 2
KHDC1 WILD-TYPE 73 103 103
'KHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S600.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KHDC1 MUTATED 4 4 3
KHDC1 WILD-TYPE 94 112 73
'KHDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S601.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KHDC1 MUTATED 2 2 0 1
KHDC1 WILD-TYPE 45 56 26 37
'KHDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KHDC1 MUTATED 0 2 1 2
KHDC1 WILD-TYPE 27 56 34 47
'KHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KHDC1 MUTATED 4 5 2
KHDC1 WILD-TYPE 99 81 99
'KHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S604.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KHDC1 MUTATED 4 3 2 2
KHDC1 WILD-TYPE 79 78 76 46
'KHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KHDC1 MUTATED 0 3 3 4 0
KHDC1 WILD-TYPE 41 76 65 82 6
'KHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KHDC1 MUTATED 6 3 1 0
KHDC1 WILD-TYPE 73 107 54 36
'KHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KHDC1 MUTATED 4 1 4
KHDC1 WILD-TYPE 71 85 104
'KHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'KHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KHDC1 MUTATED 7 2 0
KHDC1 WILD-TYPE 126 106 28
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S609.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RB1 MUTATED 5 3 1
RB1 WILD-TYPE 71 106 104
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S610.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RB1 MUTATED 1 3 5
RB1 WILD-TYPE 97 113 71
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RB1 MUTATED 2 2 1 1
RB1 WILD-TYPE 45 56 25 37
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RB1 MUTATED 1 3 1 1
RB1 WILD-TYPE 26 55 34 48
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RB1 MUTATED 5 2 2
RB1 WILD-TYPE 98 84 99
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RB1 MUTATED 4 1 2 2
RB1 WILD-TYPE 79 80 76 46
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RB1 MUTATED 0 2 5 2 0
RB1 WILD-TYPE 41 77 63 84 6
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00223 (Fisher's exact test), Q value = 0.44

Table S616.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RB1 MUTATED 7 0 2 0
RB1 WILD-TYPE 72 110 53 36

Figure S42.  Get High-res Image Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S617.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RB1 MUTATED 3 2 4
RB1 WILD-TYPE 72 84 104
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 1

Table S618.  Gene #62: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RB1 MUTATED 8 1 0
RB1 WILD-TYPE 125 107 28
'GLRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S619.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GLRB MUTATED 10 11 9
GLRB WILD-TYPE 66 98 96
'GLRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S620.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GLRB MUTATED 11 9 10
GLRB WILD-TYPE 87 107 66
'GLRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GLRB MUTATED 5 5 1 5
GLRB WILD-TYPE 42 53 25 33
'GLRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GLRB MUTATED 5 4 1 6
GLRB WILD-TYPE 22 54 34 43
'GLRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GLRB MUTATED 14 10 6
GLRB WILD-TYPE 89 76 95
'GLRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GLRB MUTATED 11 11 5 3
GLRB WILD-TYPE 72 70 73 45
'GLRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GLRB MUTATED 3 9 10 7 0
GLRB WILD-TYPE 38 70 58 79 6
'GLRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0903 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GLRB MUTATED 6 18 3 2
GLRB WILD-TYPE 73 92 52 34
'GLRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S627.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GLRB MUTATED 6 9 14
GLRB WILD-TYPE 69 77 94
'GLRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'GLRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GLRB MUTATED 19 8 2
GLRB WILD-TYPE 114 100 26
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S629.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CASP8 MUTATED 2 2 5
CASP8 WILD-TYPE 74 107 100
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S630.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 93 113 75
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CASP8 MUTATED 1 3 0 3
CASP8 WILD-TYPE 46 55 26 35
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CASP8 MUTATED 1 4 1 1
CASP8 WILD-TYPE 26 54 34 48
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CASP8 MUTATED 4 0 5
CASP8 WILD-TYPE 99 86 96
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CASP8 MUTATED 3 2 3 1
CASP8 WILD-TYPE 80 79 75 47
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CASP8 MUTATED 1 1 3 4 0
CASP8 WILD-TYPE 40 78 65 82 6
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CASP8 MUTATED 1 5 2 1
CASP8 WILD-TYPE 78 105 53 35
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S637.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CASP8 MUTATED 3 0 6
CASP8 WILD-TYPE 72 86 102
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S638.  Gene #64: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 128 105 27
'RNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S639.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RNMT MUTATED 2 3 1
RNMT WILD-TYPE 74 106 104
'RNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S640.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RNMT MUTATED 3 2 1
RNMT WILD-TYPE 95 114 75
'RNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RNMT MUTATED 1 2 0 2
RNMT WILD-TYPE 46 56 26 36
'RNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RNMT MUTATED 0 0 3 2
RNMT WILD-TYPE 27 58 32 47
'RNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RNMT MUTATED 2 2 2
RNMT WILD-TYPE 101 84 99
'RNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RNMT MUTATED 2 1 2 1
RNMT WILD-TYPE 81 80 76 47
'RNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RNMT MUTATED 0 2 2 2 0
RNMT WILD-TYPE 41 77 66 84 6
'RNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RNMT MUTATED 1 4 1 0
RNMT WILD-TYPE 78 106 54 36
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S647.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RNMT MUTATED 1 1 4
RNMT WILD-TYPE 74 85 104
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S648.  Gene #65: 'RNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RNMT MUTATED 3 3 0
RNMT WILD-TYPE 130 105 28
'ACSBG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S649.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACSBG1 MUTATED 2 8 3
ACSBG1 WILD-TYPE 74 101 102
'ACSBG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S650.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACSBG1 MUTATED 4 7 2
ACSBG1 WILD-TYPE 94 109 74
'ACSBG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S651.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ACSBG1 MUTATED 2 3 0 2
ACSBG1 WILD-TYPE 45 55 26 36
'ACSBG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S652.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ACSBG1 MUTATED 1 5 1 0
ACSBG1 WILD-TYPE 26 53 34 49
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACSBG1 MUTATED 3 6 4
ACSBG1 WILD-TYPE 100 80 97
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S654.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACSBG1 MUTATED 2 6 4 1
ACSBG1 WILD-TYPE 81 75 74 47
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S655.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ACSBG1 MUTATED 2 3 4 4 0
ACSBG1 WILD-TYPE 39 76 64 82 6
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S656.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ACSBG1 MUTATED 2 4 5 2
ACSBG1 WILD-TYPE 77 106 50 34
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S657.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ACSBG1 MUTATED 4 4 4
ACSBG1 WILD-TYPE 71 82 104
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S658.  Gene #66: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ACSBG1 MUTATED 4 6 2
ACSBG1 WILD-TYPE 129 102 26
'GZMA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S659.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GZMA MUTATED 2 5 4
GZMA WILD-TYPE 74 104 101
'GZMA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S660.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GZMA MUTATED 6 4 1
GZMA WILD-TYPE 92 112 75
'GZMA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GZMA MUTATED 4 2 1 2
GZMA WILD-TYPE 43 56 25 36
'GZMA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S662.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GZMA MUTATED 1 3 3 2
GZMA WILD-TYPE 26 55 32 47
'GZMA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GZMA MUTATED 4 4 3
GZMA WILD-TYPE 99 82 98
'GZMA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GZMA MUTATED 4 3 2 2
GZMA WILD-TYPE 79 78 76 46
'GZMA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S665.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GZMA MUTATED 1 2 2 5 1
GZMA WILD-TYPE 40 77 66 81 5
'GZMA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S666.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GZMA MUTATED 3 5 2 1
GZMA WILD-TYPE 76 105 53 35
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S667.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GZMA MUTATED 2 1 8
GZMA WILD-TYPE 73 85 100
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S668.  Gene #67: 'GZMA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GZMA MUTATED 7 3 1
GZMA WILD-TYPE 126 105 27
'AK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S669.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
AK7 MUTATED 4 9 6
AK7 WILD-TYPE 72 100 99
'AK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S670.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
AK7 MUTATED 8 6 5
AK7 WILD-TYPE 90 110 71
'AK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
AK7 MUTATED 3 4 0 3
AK7 WILD-TYPE 44 54 26 35
'AK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S672.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
AK7 MUTATED 2 3 3 2
AK7 WILD-TYPE 25 55 32 47
'AK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
AK7 MUTATED 6 6 7
AK7 WILD-TYPE 97 80 94
'AK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
AK7 MUTATED 7 5 4 3
AK7 WILD-TYPE 76 76 74 45
'AK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.95

Table S675.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
AK7 MUTATED 0 5 2 10 1
AK7 WILD-TYPE 41 74 66 76 5

Figure S43.  Get High-res Image Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.95

Table S676.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
AK7 MUTATED 2 12 4 0
AK7 WILD-TYPE 77 98 51 36

Figure S44.  Get High-res Image Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S677.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
AK7 MUTATED 5 3 10
AK7 WILD-TYPE 70 83 98
'AK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S678.  Gene #68: 'AK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
AK7 MUTATED 12 6 0
AK7 WILD-TYPE 121 102 28
'ASNSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00675 (Fisher's exact test), Q value = 0.59

Table S679.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ASNSD1 MUTATED 1 7 0
ASNSD1 WILD-TYPE 75 102 105

Figure S45.  Get High-res Image Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASNSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S680.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ASNSD1 MUTATED 2 5 1
ASNSD1 WILD-TYPE 96 111 75
'ASNSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ASNSD1 MUTATED 3 2 0 1
ASNSD1 WILD-TYPE 44 56 26 37
'ASNSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ASNSD1 MUTATED 3 0 1 2
ASNSD1 WILD-TYPE 24 58 34 47
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ASNSD1 MUTATED 4 3 1
ASNSD1 WILD-TYPE 99 83 100
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ASNSD1 MUTATED 2 4 1 1
ASNSD1 WILD-TYPE 81 77 77 47
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ASNSD1 MUTATED 1 3 2 2 0
ASNSD1 WILD-TYPE 40 76 66 84 6
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ASNSD1 MUTATED 2 4 1 1
ASNSD1 WILD-TYPE 77 106 54 35
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S687.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ASNSD1 MUTATED 4 2 2
ASNSD1 WILD-TYPE 71 84 106
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S688.  Gene #69: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ASNSD1 MUTATED 4 3 1
ASNSD1 WILD-TYPE 129 105 27
'IL31RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S689.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IL31RA MUTATED 6 7 7
IL31RA WILD-TYPE 70 102 98
'IL31RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S690.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IL31RA MUTATED 8 7 5
IL31RA WILD-TYPE 90 109 71
'IL31RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
IL31RA MUTATED 4 4 0 3
IL31RA WILD-TYPE 43 54 26 35
'IL31RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IL31RA MUTATED 2 5 2 2
IL31RA WILD-TYPE 25 53 33 47
'IL31RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IL31RA MUTATED 9 6 5
IL31RA WILD-TYPE 94 80 96
'IL31RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IL31RA MUTATED 7 5 3 5
IL31RA WILD-TYPE 76 76 75 43
'IL31RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S695.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IL31RA MUTATED 2 6 5 7 0
IL31RA WILD-TYPE 39 73 63 79 6
'IL31RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IL31RA MUTATED 8 9 2 1
IL31RA WILD-TYPE 71 101 53 35
'IL31RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S697.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IL31RA MUTATED 6 5 7
IL31RA WILD-TYPE 69 81 101
'IL31RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S698.  Gene #70: 'IL31RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IL31RA MUTATED 10 7 1
IL31RA WILD-TYPE 123 101 27
'ACMSD MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S699.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACMSD MUTATED 3 5 4
ACMSD WILD-TYPE 73 104 101
'ACMSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S700.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACMSD MUTATED 5 4 3
ACMSD WILD-TYPE 93 112 73
'ACMSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ACMSD MUTATED 3 3 0 2
ACMSD WILD-TYPE 44 55 26 36
'ACMSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ACMSD MUTATED 1 3 1 3
ACMSD WILD-TYPE 26 55 34 46
'ACMSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACMSD MUTATED 4 3 5
ACMSD WILD-TYPE 99 83 96
'ACMSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACMSD MUTATED 5 2 3 2
ACMSD WILD-TYPE 78 79 75 46
'ACMSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ACMSD MUTATED 1 4 2 5 0
ACMSD WILD-TYPE 40 75 66 81 6
'ACMSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S706.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ACMSD MUTATED 3 5 3 1
ACMSD WILD-TYPE 76 105 52 35
'ACMSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S707.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ACMSD MUTATED 3 3 5
ACMSD WILD-TYPE 72 83 103
'ACMSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S708.  Gene #71: 'ACMSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ACMSD MUTATED 5 5 1
ACMSD WILD-TYPE 128 103 27
'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S709.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C6ORF165 MUTATED 5 8 6
C6ORF165 WILD-TYPE 71 101 99
'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S710.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C6ORF165 MUTATED 7 8 4
C6ORF165 WILD-TYPE 91 108 72
'C6ORF165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S711.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
C6ORF165 MUTATED 1 3 3 4
C6ORF165 WILD-TYPE 46 55 23 34
'C6ORF165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C6ORF165 MUTATED 0 3 2 6
C6ORF165 WILD-TYPE 27 55 33 43
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C6ORF165 MUTATED 8 7 4
C6ORF165 WILD-TYPE 95 79 97
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C6ORF165 MUTATED 6 5 4 4
C6ORF165 WILD-TYPE 77 76 74 44
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S715.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
C6ORF165 MUTATED 1 5 5 7 0
C6ORF165 WILD-TYPE 40 74 63 79 6
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
C6ORF165 MUTATED 2 10 6 0
C6ORF165 WILD-TYPE 77 100 49 36

Figure S46.  Get High-res Image Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S717.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
C6ORF165 MUTATED 4 4 10
C6ORF165 WILD-TYPE 71 82 98
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S718.  Gene #72: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
C6ORF165 MUTATED 10 8 0
C6ORF165 WILD-TYPE 123 100 28
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S719.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CTNNB1 MUTATED 5 5 6
CTNNB1 WILD-TYPE 71 104 99
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S720.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CTNNB1 MUTATED 7 5 4
CTNNB1 WILD-TYPE 91 111 72
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CTNNB1 MUTATED 1 5 0 3
CTNNB1 WILD-TYPE 46 53 26 35
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CTNNB1 MUTATED 2 2 3 2
CTNNB1 WILD-TYPE 25 56 32 47
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CTNNB1 MUTATED 9 3 4
CTNNB1 WILD-TYPE 94 83 97
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CTNNB1 MUTATED 7 2 4 3
CTNNB1 WILD-TYPE 76 79 74 45
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S725.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CTNNB1 MUTATED 2 3 5 4 0
CTNNB1 WILD-TYPE 39 76 63 82 6
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S726.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CTNNB1 MUTATED 4 4 4 2
CTNNB1 WILD-TYPE 75 106 51 34
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S727.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CTNNB1 MUTATED 3 4 7
CTNNB1 WILD-TYPE 72 82 101
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S728.  Gene #73: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CTNNB1 MUTATED 9 4 1
CTNNB1 WILD-TYPE 124 104 27
'MME MUTATION STATUS' versus 'CN_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S729.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MME MUTATED 6 9 6
MME WILD-TYPE 70 100 99
'MME MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S730.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MME MUTATED 8 8 5
MME WILD-TYPE 90 108 71
'MME MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MME MUTATED 6 5 0 2
MME WILD-TYPE 41 53 26 36
'MME MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MME MUTATED 1 4 4 4
MME WILD-TYPE 26 54 31 45
'MME MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MME MUTATED 6 6 9
MME WILD-TYPE 97 80 92
'MME MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S734.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MME MUTATED 6 2 9 4
MME WILD-TYPE 77 79 69 44
'MME MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MME MUTATED 3 9 4 3 1
MME WILD-TYPE 38 70 64 83 5
'MME MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MME MUTATED 5 7 6 2
MME WILD-TYPE 74 103 49 34
'MME MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S737.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MME MUTATED 5 6 9
MME WILD-TYPE 70 80 99
'MME MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S738.  Gene #74: 'MME MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MME MUTATED 7 11 2
MME WILD-TYPE 126 97 26
'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S739.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZMYND8 MUTATED 2 9 6
ZMYND8 WILD-TYPE 74 100 99
'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S740.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZMYND8 MUTATED 8 6 3
ZMYND8 WILD-TYPE 90 110 73
'ZMYND8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ZMYND8 MUTATED 3 4 0 4
ZMYND8 WILD-TYPE 44 54 26 34
'ZMYND8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZMYND8 MUTATED 1 4 3 3
ZMYND8 WILD-TYPE 26 54 32 46
'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZMYND8 MUTATED 5 7 5
ZMYND8 WILD-TYPE 98 79 96
'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZMYND8 MUTATED 3 9 4 1
ZMYND8 WILD-TYPE 80 72 74 47
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S745.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZMYND8 MUTATED 1 5 5 5 0
ZMYND8 WILD-TYPE 40 74 63 81 6
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZMYND8 MUTATED 2 9 4 1
ZMYND8 WILD-TYPE 77 101 51 35
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S747.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZMYND8 MUTATED 7 4 5
ZMYND8 WILD-TYPE 68 82 103
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S748.  Gene #75: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZMYND8 MUTATED 7 9 0
ZMYND8 WILD-TYPE 126 99 28
'GCOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S749.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GCOM1 MUTATED 6 11 7
GCOM1 WILD-TYPE 70 98 98
'GCOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S750.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GCOM1 MUTATED 9 9 6
GCOM1 WILD-TYPE 89 107 70
'GCOM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S751.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GCOM1 MUTATED 1 5 1 3
GCOM1 WILD-TYPE 46 53 25 35
'GCOM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GCOM1 MUTATED 1 5 1 3
GCOM1 WILD-TYPE 26 53 34 46
'GCOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.8

Table S753.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GCOM1 MUTATED 3 12 9
GCOM1 WILD-TYPE 100 74 92

Figure S47.  Get High-res Image Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GCOM1 MUTATED 5 8 8 3
GCOM1 WILD-TYPE 78 73 70 45
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S755.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GCOM1 MUTATED 1 5 5 11 1
GCOM1 WILD-TYPE 40 74 63 75 5
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GCOM1 MUTATED 5 10 7 1
GCOM1 WILD-TYPE 74 100 48 35
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S757.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GCOM1 MUTATED 8 4 10
GCOM1 WILD-TYPE 67 82 98
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S758.  Gene #76: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GCOM1 MUTATED 13 8 1
GCOM1 WILD-TYPE 120 100 27
'HTR2C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S759.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HTR2C MUTATED 6 9 6
HTR2C WILD-TYPE 70 100 99
'HTR2C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S760.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HTR2C MUTATED 12 4 5
HTR2C WILD-TYPE 86 112 71
'HTR2C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S761.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
HTR2C MUTATED 1 7 2 2
HTR2C WILD-TYPE 46 51 24 36
'HTR2C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.94

Table S762.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HTR2C MUTATED 0 8 0 4
HTR2C WILD-TYPE 27 50 35 45

Figure S48.  Get High-res Image Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HTR2C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HTR2C MUTATED 4 11 6
HTR2C WILD-TYPE 99 75 95
'HTR2C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S764.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HTR2C MUTATED 6 9 3 3
HTR2C WILD-TYPE 77 72 75 45
'HTR2C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
HTR2C MUTATED 1 8 4 4 0
HTR2C WILD-TYPE 40 71 64 82 6
'HTR2C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
HTR2C MUTATED 3 10 3 1
HTR2C WILD-TYPE 76 100 52 35
'HTR2C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S767.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
HTR2C MUTATED 8 4 5
HTR2C WILD-TYPE 67 82 103
'HTR2C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S768.  Gene #77: 'HTR2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
HTR2C MUTATED 8 8 1
HTR2C WILD-TYPE 125 100 27
'INPP5D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S769.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
INPP5D MUTATED 4 15 7
INPP5D WILD-TYPE 72 94 98
'INPP5D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S770.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
INPP5D MUTATED 10 11 5
INPP5D WILD-TYPE 88 105 71
'INPP5D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S771.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
INPP5D MUTATED 6 3 1 5
INPP5D WILD-TYPE 41 55 25 33
'INPP5D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S772.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
INPP5D MUTATED 4 6 2 3
INPP5D WILD-TYPE 23 52 33 46
'INPP5D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S773.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
INPP5D MUTATED 9 9 8
INPP5D WILD-TYPE 94 77 93
'INPP5D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S774.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
INPP5D MUTATED 7 8 7 4
INPP5D WILD-TYPE 76 73 71 44
'INPP5D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
INPP5D MUTATED 3 9 5 6 0
INPP5D WILD-TYPE 38 70 63 80 6
'INPP5D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S776.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
INPP5D MUTATED 7 7 7 2
INPP5D WILD-TYPE 72 103 48 34
'INPP5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S777.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
INPP5D MUTATED 9 7 7
INPP5D WILD-TYPE 66 79 101
'INPP5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S778.  Gene #78: 'INPP5D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
INPP5D MUTATED 11 10 2
INPP5D WILD-TYPE 122 98 26
'MAP3K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S779.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MAP3K5 MUTATED 2 11 7
MAP3K5 WILD-TYPE 74 98 98
'MAP3K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S780.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MAP3K5 MUTATED 6 11 3
MAP3K5 WILD-TYPE 92 105 73
'MAP3K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MAP3K5 MUTATED 6 4 0 2
MAP3K5 WILD-TYPE 41 54 26 36
'MAP3K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MAP3K5 MUTATED 2 6 1 3
MAP3K5 WILD-TYPE 25 52 34 46
'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.76

Table S783.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MAP3K5 MUTATED 2 11 7
MAP3K5 WILD-TYPE 101 75 94

Figure S49.  Get High-res Image Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MAP3K5 MUTATED 4 5 7 4
MAP3K5 WILD-TYPE 79 76 71 44
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S785.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MAP3K5 MUTATED 1 8 4 5 1
MAP3K5 WILD-TYPE 40 71 64 81 5
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S786.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MAP3K5 MUTATED 5 7 6 1
MAP3K5 WILD-TYPE 74 103 49 35
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S787.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MAP3K5 MUTATED 6 7 6
MAP3K5 WILD-TYPE 69 79 102
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S788.  Gene #79: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MAP3K5 MUTATED 8 10 1
MAP3K5 WILD-TYPE 125 98 27
'ITGB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S789.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ITGB3 MUTATED 3 10 7
ITGB3 WILD-TYPE 73 99 98
'ITGB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S790.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ITGB3 MUTATED 9 9 2
ITGB3 WILD-TYPE 89 107 74
'ITGB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ITGB3 MUTATED 3 1 1 4
ITGB3 WILD-TYPE 44 57 25 34
'ITGB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ITGB3 MUTATED 1 4 1 3
ITGB3 WILD-TYPE 26 54 34 46
'ITGB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ITGB3 MUTATED 5 7 8
ITGB3 WILD-TYPE 98 79 93
'ITGB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S794.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ITGB3 MUTATED 5 7 4 4
ITGB3 WILD-TYPE 78 74 74 44
'ITGB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S795.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ITGB3 MUTATED 3 9 2 4 0
ITGB3 WILD-TYPE 38 70 66 82 6
'ITGB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S796.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ITGB3 MUTATED 5 10 2 1
ITGB3 WILD-TYPE 74 100 53 35
'ITGB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S797.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ITGB3 MUTATED 3 6 9
ITGB3 WILD-TYPE 72 80 99
'ITGB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S798.  Gene #80: 'ITGB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ITGB3 MUTATED 9 8 1
ITGB3 WILD-TYPE 124 100 27
'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S799.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HEPACAM2 MUTATED 2 5 8
HEPACAM2 WILD-TYPE 74 104 97
'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S800.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HEPACAM2 MUTATED 8 5 2
HEPACAM2 WILD-TYPE 90 111 74
'HEPACAM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
HEPACAM2 MUTATED 2 2 0 3
HEPACAM2 WILD-TYPE 45 56 26 35
'HEPACAM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HEPACAM2 MUTATED 0 3 3 1
HEPACAM2 WILD-TYPE 27 55 32 48
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S803.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HEPACAM2 MUTATED 5 6 4
HEPACAM2 WILD-TYPE 98 80 97
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HEPACAM2 MUTATED 5 5 4 1
HEPACAM2 WILD-TYPE 78 76 74 47
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S805.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
HEPACAM2 MUTATED 2 3 4 3 1
HEPACAM2 WILD-TYPE 39 76 64 83 5
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S806.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
HEPACAM2 MUTATED 1 8 2 2
HEPACAM2 WILD-TYPE 78 102 53 34
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S807.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
HEPACAM2 MUTATED 2 3 8
HEPACAM2 WILD-TYPE 73 83 100
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S808.  Gene #81: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
HEPACAM2 MUTATED 5 6 2
HEPACAM2 WILD-TYPE 128 102 26
'NMS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S809.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NMS MUTATED 3 5 5
NMS WILD-TYPE 73 104 100
'NMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S810.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NMS MUTATED 4 8 1
NMS WILD-TYPE 94 108 75
'NMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NMS MUTATED 4 1 2 3
NMS WILD-TYPE 43 57 24 35
'NMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S812.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NMS MUTATED 2 4 2 2
NMS WILD-TYPE 25 54 33 47
'NMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.8

Table S813.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NMS MUTATED 2 9 2
NMS WILD-TYPE 101 77 99

Figure S50.  Get High-res Image Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S814.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NMS MUTATED 3 6 1 3
NMS WILD-TYPE 80 75 77 45
'NMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S815.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NMS MUTATED 1 4 4 4 0
NMS WILD-TYPE 40 75 64 82 6
'NMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S816.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NMS MUTATED 4 6 2 1
NMS WILD-TYPE 75 104 53 35
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S817.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NMS MUTATED 6 3 4
NMS WILD-TYPE 69 83 104
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S818.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NMS MUTATED 8 4 1
NMS WILD-TYPE 125 104 27
'CD86 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S819.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD86 MUTATED 7 10 4
CD86 WILD-TYPE 69 99 101
'CD86 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S820.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD86 MUTATED 8 11 2
CD86 WILD-TYPE 90 105 74
'CD86 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CD86 MUTATED 4 2 3 5
CD86 WILD-TYPE 43 56 23 33
'CD86 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD86 MUTATED 4 4 1 5
CD86 WILD-TYPE 23 54 34 44
'CD86 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S823.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD86 MUTATED 7 9 5
CD86 WILD-TYPE 96 77 96
'CD86 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S824.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD86 MUTATED 7 7 2 5
CD86 WILD-TYPE 76 74 76 43
'CD86 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S825.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CD86 MUTATED 4 5 4 7 0
CD86 WILD-TYPE 37 74 64 79 6
'CD86 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S826.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CD86 MUTATED 5 10 2 3
CD86 WILD-TYPE 74 100 53 33
'CD86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S827.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CD86 MUTATED 5 7 8
CD86 WILD-TYPE 70 79 100
'CD86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S828.  Gene #83: 'CD86 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CD86 MUTATED 10 7 3
CD86 WILD-TYPE 123 101 25
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S829.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BTK MUTATED 1 5 9
BTK WILD-TYPE 75 104 96
'BTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S830.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BTK MUTATED 6 8 1
BTK WILD-TYPE 92 108 75
'BTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
BTK MUTATED 2 3 1 5
BTK WILD-TYPE 45 55 25 33
'BTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BTK MUTATED 0 5 3 3
BTK WILD-TYPE 27 53 32 46
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.55

Table S833.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BTK MUTATED 1 10 4
BTK WILD-TYPE 102 76 97

Figure S51.  Get High-res Image Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S834.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BTK MUTATED 2 6 3 4
BTK WILD-TYPE 81 75 75 44
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S835.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
BTK MUTATED 3 3 4 4 0
BTK WILD-TYPE 38 76 64 82 6
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S836.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
BTK MUTATED 2 5 5 2
BTK WILD-TYPE 77 105 50 34
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S837.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
BTK MUTATED 6 4 4
BTK WILD-TYPE 69 82 104
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S838.  Gene #84: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
BTK MUTATED 8 5 1
BTK WILD-TYPE 125 103 27
'PDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S839.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PDK4 MUTATED 2 3 2
PDK4 WILD-TYPE 74 106 103
'PDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S840.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PDK4 MUTATED 3 4 0
PDK4 WILD-TYPE 95 112 76
'PDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.86

Table S841.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PDK4 MUTATED 4 0 0 0
PDK4 WILD-TYPE 43 58 26 38

Figure S52.  Get High-res Image Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S842.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PDK4 MUTATED 2 2 0 0
PDK4 WILD-TYPE 25 56 35 49
'PDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S843.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PDK4 MUTATED 4 1 2
PDK4 WILD-TYPE 99 85 99
'PDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S844.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PDK4 MUTATED 3 0 3 1
PDK4 WILD-TYPE 80 81 75 47
'PDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S845.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PDK4 MUTATED 0 3 2 1 0
PDK4 WILD-TYPE 41 76 66 85 6
'PDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S846.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PDK4 MUTATED 2 1 3 0
PDK4 WILD-TYPE 77 109 52 36
'PDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S847.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PDK4 MUTATED 2 2 2
PDK4 WILD-TYPE 73 84 106
'PDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S848.  Gene #85: 'PDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PDK4 MUTATED 2 4 0
PDK4 WILD-TYPE 131 104 28
'MAN1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S849.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MAN1A1 MUTATED 3 8 4
MAN1A1 WILD-TYPE 73 101 101
'MAN1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S850.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MAN1A1 MUTATED 5 8 2
MAN1A1 WILD-TYPE 93 108 74
'MAN1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MAN1A1 MUTATED 3 5 0 1
MAN1A1 WILD-TYPE 44 53 26 37
'MAN1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S852.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MAN1A1 MUTATED 2 5 2 0
MAN1A1 WILD-TYPE 25 53 33 49
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S853.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MAN1A1 MUTATED 6 7 2
MAN1A1 WILD-TYPE 97 79 99
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S854.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MAN1A1 MUTATED 3 7 3 2
MAN1A1 WILD-TYPE 80 74 75 46
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S855.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MAN1A1 MUTATED 1 3 6 3 1
MAN1A1 WILD-TYPE 40 76 62 83 5
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S856.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MAN1A1 MUTATED 7 2 4 1
MAN1A1 WILD-TYPE 72 108 51 35
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S857.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MAN1A1 MUTATED 7 2 5
MAN1A1 WILD-TYPE 68 84 103
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S858.  Gene #86: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MAN1A1 MUTATED 9 4 1
MAN1A1 WILD-TYPE 124 104 27
'CSN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S859.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CSN3 MUTATED 3 0 1
CSN3 WILD-TYPE 73 109 104
'CSN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S860.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CSN3 MUTATED 3 1 0
CSN3 WILD-TYPE 95 115 76
'CSN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S861.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 47 56 25 38
'CSN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 27 56 34 49
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S863.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 102 85 99
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S864.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CSN3 MUTATED 0 1 2 1
CSN3 WILD-TYPE 83 80 76 47
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S865.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CSN3 MUTATED 1 1 1 1 0
CSN3 WILD-TYPE 40 78 67 85 6
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S866.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 78 109 54 35
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S867.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 74 85 106
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S868.  Gene #87: 'CSN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CSN3 MUTATED 3 0 1
CSN3 WILD-TYPE 130 108 27
'ZNF589 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S869.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF589 MUTATED 1 1 1
ZNF589 WILD-TYPE 75 108 104
'ZNF589 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S870.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF589 MUTATED 1 2 0
ZNF589 WILD-TYPE 97 114 76
'ZNF589 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S871.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF589 MUTATED 2 1 0
ZNF589 WILD-TYPE 101 85 101
'ZNF589 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S872.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF589 MUTATED 0 2 0 1
ZNF589 WILD-TYPE 83 79 78 47
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S873.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZNF589 MUTATED 0 0 1 2 0
ZNF589 WILD-TYPE 41 79 67 84 6
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S874.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZNF589 MUTATED 2 1 0 0
ZNF589 WILD-TYPE 77 109 55 36
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S875.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZNF589 MUTATED 2 0 1
ZNF589 WILD-TYPE 73 86 107
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S876.  Gene #88: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZNF589 MUTATED 3 0 0
ZNF589 WILD-TYPE 130 108 28
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.94

Table S877.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
THEMIS MUTATED 13 15 6
THEMIS WILD-TYPE 63 94 99

Figure S53.  Get High-res Image Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S878.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
THEMIS MUTATED 18 9 7
THEMIS WILD-TYPE 80 107 69

Figure S54.  Get High-res Image Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S879.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
THEMIS MUTATED 6 7 1 6
THEMIS WILD-TYPE 41 51 25 32
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S880.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
THEMIS MUTATED 4 7 2 7
THEMIS WILD-TYPE 23 51 33 42
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
THEMIS MUTATED 11 13 10
THEMIS WILD-TYPE 92 73 91
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
THEMIS MUTATED 13 7 7 7
THEMIS WILD-TYPE 70 74 71 41
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S883.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
THEMIS MUTATED 1 9 7 14 0
THEMIS WILD-TYPE 40 70 61 72 6
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S884.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
THEMIS MUTATED 8 16 6 1
THEMIS WILD-TYPE 71 94 49 35
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S885.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
THEMIS MUTATED 9 7 14
THEMIS WILD-TYPE 66 79 94
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S886.  Gene #89: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
THEMIS MUTATED 17 12 1
THEMIS WILD-TYPE 116 96 27
'TCHHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S887.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TCHHL1 MUTATED 15 14 9
TCHHL1 WILD-TYPE 61 95 96
'TCHHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S888.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TCHHL1 MUTATED 14 17 7
TCHHL1 WILD-TYPE 84 99 69
'TCHHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S889.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TCHHL1 MUTATED 10 3 4 7
TCHHL1 WILD-TYPE 37 55 22 31
'TCHHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S890.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TCHHL1 MUTATED 7 10 4 3
TCHHL1 WILD-TYPE 20 48 31 46
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TCHHL1 MUTATED 11 16 11
TCHHL1 WILD-TYPE 92 70 90
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TCHHL1 MUTATED 6 12 9 11
TCHHL1 WILD-TYPE 77 69 69 37
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S893.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TCHHL1 MUTATED 7 10 9 11 1
TCHHL1 WILD-TYPE 34 69 59 75 5
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S894.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TCHHL1 MUTATED 10 14 8 6
TCHHL1 WILD-TYPE 69 96 47 30
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S895.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TCHHL1 MUTATED 13 11 12
TCHHL1 WILD-TYPE 62 75 96
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S896.  Gene #90: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TCHHL1 MUTATED 19 12 5
TCHHL1 WILD-TYPE 114 96 23
'ELOVL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S897.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ELOVL3 MUTATED 2 3 0
ELOVL3 WILD-TYPE 74 106 105
'ELOVL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S898.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ELOVL3 MUTATED 1 3 1
ELOVL3 WILD-TYPE 97 113 75
'ELOVL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S899.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ELOVL3 MUTATED 0 1 1 1
ELOVL3 WILD-TYPE 47 57 25 37
'ELOVL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S900.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ELOVL3 MUTATED 1 0 1 1
ELOVL3 WILD-TYPE 26 58 34 48
'ELOVL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ELOVL3 MUTATED 3 2 0
ELOVL3 WILD-TYPE 100 84 101
'ELOVL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S902.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ELOVL3 MUTATED 2 1 0 2
ELOVL3 WILD-TYPE 81 80 78 46
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S903.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ELOVL3 MUTATED 1 1 0 3 0
ELOVL3 WILD-TYPE 40 78 68 83 6
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ELOVL3 MUTATED 1 3 0 1
ELOVL3 WILD-TYPE 78 107 55 35
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S905.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ELOVL3 MUTATED 1 2 2
ELOVL3 WILD-TYPE 74 84 106
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S906.  Gene #91: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ELOVL3 MUTATED 3 1 1
ELOVL3 WILD-TYPE 130 107 27
'ACO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S907.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACO1 MUTATED 5 1 2
ACO1 WILD-TYPE 71 108 103
'ACO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S908.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACO1 MUTATED 2 3 3
ACO1 WILD-TYPE 96 113 73
'ACO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.94

Table S909.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ACO1 MUTATED 0 0 2 2
ACO1 WILD-TYPE 47 58 24 36

Figure S55.  Get High-res Image Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S910.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ACO1 MUTATED 0 1 1 2
ACO1 WILD-TYPE 27 57 34 47
'ACO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S911.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACO1 MUTATED 4 2 2
ACO1 WILD-TYPE 99 84 99
'ACO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S912.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACO1 MUTATED 2 3 1 2
ACO1 WILD-TYPE 81 78 77 46
'ACO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.8

Table S913.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ACO1 MUTATED 0 1 0 6 1
ACO1 WILD-TYPE 41 78 68 80 5

Figure S56.  Get High-res Image Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S914.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ACO1 MUTATED 2 6 0 0
ACO1 WILD-TYPE 77 104 55 36
'ACO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S915.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ACO1 MUTATED 1 1 4
ACO1 WILD-TYPE 74 85 104
'ACO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S916.  Gene #92: 'ACO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ACO1 MUTATED 4 2 0
ACO1 WILD-TYPE 129 106 28
'RPL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 1

Table S917.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RPL5 MUTATED 4 3 0
RPL5 WILD-TYPE 72 106 105
'RPL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S918.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RPL5 MUTATED 4 2 1
RPL5 WILD-TYPE 94 114 75
'RPL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S919.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RPL5 MUTATED 4 2 1
RPL5 WILD-TYPE 99 84 100
'RPL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S920.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RPL5 MUTATED 3 3 1 0
RPL5 WILD-TYPE 80 78 77 48
'RPL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RPL5 MUTATED 2 2 0 1 1
RPL5 WILD-TYPE 39 77 68 85 5
'RPL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S922.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RPL5 MUTATED 0 3 1 2
RPL5 WILD-TYPE 79 107 54 34
'RPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S923.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RPL5 MUTATED 3 1 2
RPL5 WILD-TYPE 72 85 106
'RPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S924.  Gene #93: 'RPL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RPL5 MUTATED 2 2 2
RPL5 WILD-TYPE 131 106 26
'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S925.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
USP9X MUTATED 6 7 4
USP9X WILD-TYPE 70 102 101
'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S926.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
USP9X MUTATED 7 5 5
USP9X WILD-TYPE 91 111 71
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S927.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
USP9X MUTATED 1 4 1 4
USP9X WILD-TYPE 46 54 25 34
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 1

Table S928.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
USP9X MUTATED 0 5 0 5
USP9X WILD-TYPE 27 53 35 44
'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S929.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
USP9X MUTATED 6 6 5
USP9X WILD-TYPE 97 80 96
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S930.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
USP9X MUTATED 6 4 5 2
USP9X WILD-TYPE 77 77 73 46
'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
USP9X MUTATED 0 4 5 7 1
USP9X WILD-TYPE 41 75 63 79 5
'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
USP9X MUTATED 6 7 4 0
USP9X WILD-TYPE 73 103 51 36
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S933.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
USP9X MUTATED 7 2 8
USP9X WILD-TYPE 68 84 100
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S934.  Gene #94: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
USP9X MUTATED 9 8 0
USP9X WILD-TYPE 124 100 28
'COL4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S935.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
COL4A3 MUTATED 10 15 12
COL4A3 WILD-TYPE 66 94 93
'COL4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S936.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
COL4A3 MUTATED 11 16 10
COL4A3 WILD-TYPE 87 100 66
'COL4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S937.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
COL4A3 MUTATED 7 8 2 4
COL4A3 WILD-TYPE 40 50 24 34
'COL4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S938.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
COL4A3 MUTATED 3 8 2 8
COL4A3 WILD-TYPE 24 50 33 41
'COL4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S939.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
COL4A3 MUTATED 14 11 12
COL4A3 WILD-TYPE 89 75 89
'COL4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S940.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
COL4A3 MUTATED 14 6 11 6
COL4A3 WILD-TYPE 69 75 67 42
'COL4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S941.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
COL4A3 MUTATED 2 11 9 11 2
COL4A3 WILD-TYPE 39 68 59 75 4
'COL4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S942.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
COL4A3 MUTATED 12 13 8 2
COL4A3 WILD-TYPE 67 97 47 34
'COL4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S943.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
COL4A3 MUTATED 10 9 16
COL4A3 WILD-TYPE 65 77 92
'COL4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S944.  Gene #95: 'COL4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
COL4A3 MUTATED 19 14 2
COL4A3 WILD-TYPE 114 94 26
'UBE2V2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S945.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UBE2V2 MUTATED 0 2 1
UBE2V2 WILD-TYPE 76 107 104
'UBE2V2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S946.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UBE2V2 MUTATED 1 1 1
UBE2V2 WILD-TYPE 97 115 75
'UBE2V2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S947.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UBE2V2 MUTATED 0 2 1
UBE2V2 WILD-TYPE 103 84 100
'UBE2V2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S948.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UBE2V2 MUTATED 0 1 1 1
UBE2V2 WILD-TYPE 83 80 77 47
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S949.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UBE2V2 MUTATED 0 1 1 1 0
UBE2V2 WILD-TYPE 41 78 67 85 6
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S950.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UBE2V2 MUTATED 2 0 1 0
UBE2V2 WILD-TYPE 77 110 54 36
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S951.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UBE2V2 MUTATED 2 1 0
UBE2V2 WILD-TYPE 73 85 108
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S952.  Gene #96: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UBE2V2 MUTATED 2 1 0
UBE2V2 WILD-TYPE 131 107 28
'CCDC38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S953.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CCDC38 MUTATED 4 5 4
CCDC38 WILD-TYPE 72 104 101
'CCDC38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S954.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CCDC38 MUTATED 5 5 3
CCDC38 WILD-TYPE 93 111 73
'CCDC38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S955.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CCDC38 MUTATED 3 4 1 2
CCDC38 WILD-TYPE 44 54 25 36
'CCDC38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S956.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CCDC38 MUTATED 2 3 2 3
CCDC38 WILD-TYPE 25 55 33 46
'CCDC38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S957.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CCDC38 MUTATED 5 4 4
CCDC38 WILD-TYPE 98 82 97
'CCDC38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S958.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CCDC38 MUTATED 4 4 2 3
CCDC38 WILD-TYPE 79 77 76 45
'CCDC38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S959.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CCDC38 MUTATED 1 4 3 5 0
CCDC38 WILD-TYPE 40 75 65 81 6
'CCDC38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S960.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CCDC38 MUTATED 6 4 2 1
CCDC38 WILD-TYPE 73 106 53 35
'CCDC38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S961.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CCDC38 MUTATED 6 2 5
CCDC38 WILD-TYPE 69 84 103
'CCDC38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'CCDC38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CCDC38 MUTATED 7 6 0
CCDC38 WILD-TYPE 126 102 28
'C10ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S963.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C10ORF118 MUTATED 1 4 2
C10ORF118 WILD-TYPE 75 105 103
'C10ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S964.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C10ORF118 MUTATED 2 4 1
C10ORF118 WILD-TYPE 96 112 75
'C10ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S965.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
C10ORF118 MUTATED 1 2 0 2
C10ORF118 WILD-TYPE 46 56 26 36
'C10ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S966.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C10ORF118 MUTATED 0 1 2 2
C10ORF118 WILD-TYPE 27 57 33 47
'C10ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S967.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C10ORF118 MUTATED 4 1 2
C10ORF118 WILD-TYPE 99 85 99
'C10ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0844 (Fisher's exact test), Q value = 1

Table S968.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C10ORF118 MUTATED 3 0 1 3
C10ORF118 WILD-TYPE 80 81 77 45
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S969.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
C10ORF118 MUTATED 1 2 2 2 0
C10ORF118 WILD-TYPE 40 77 66 84 6
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S970.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
C10ORF118 MUTATED 2 4 1 0
C10ORF118 WILD-TYPE 77 106 54 36
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
C10ORF118 MUTATED 2 1 4
C10ORF118 WILD-TYPE 73 85 104
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
C10ORF118 MUTATED 5 2 0
C10ORF118 WILD-TYPE 128 106 28
'POLR2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S973.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
POLR2B MUTATED 3 3 4
POLR2B WILD-TYPE 73 106 101
'POLR2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.95

Table S974.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
POLR2B MUTATED 7 1 2
POLR2B WILD-TYPE 91 115 74

Figure S57.  Get High-res Image Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POLR2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S975.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
POLR2B MUTATED 0 2 3 3
POLR2B WILD-TYPE 47 56 23 35
'POLR2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S976.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
POLR2B MUTATED 0 1 2 5
POLR2B WILD-TYPE 27 57 33 44
'POLR2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S977.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
POLR2B MUTATED 5 2 3
POLR2B WILD-TYPE 98 84 98
'POLR2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S978.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
POLR2B MUTATED 5 2 2 1
POLR2B WILD-TYPE 78 79 76 47
'POLR2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S979.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
POLR2B MUTATED 0 2 2 5 0
POLR2B WILD-TYPE 41 77 66 81 6
'POLR2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S980.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
POLR2B MUTATED 1 5 3 0
POLR2B WILD-TYPE 78 105 52 36
'POLR2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S981.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
POLR2B MUTATED 3 1 5
POLR2B WILD-TYPE 72 85 103
'POLR2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S982.  Gene #99: 'POLR2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
POLR2B MUTATED 5 4 0
POLR2B WILD-TYPE 128 104 28
'DGKI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S983.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DGKI MUTATED 11 13 9
DGKI WILD-TYPE 65 96 96
'DGKI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 1

Table S984.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DGKI MUTATED 17 12 4
DGKI WILD-TYPE 81 104 72

Figure S58.  Get High-res Image Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DGKI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S985.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DGKI MUTATED 6 9 2 6
DGKI WILD-TYPE 41 49 24 32
'DGKI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S986.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DGKI MUTATED 5 5 5 8
DGKI WILD-TYPE 22 53 30 41
'DGKI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S987.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DGKI MUTATED 10 7 16
DGKI WILD-TYPE 93 79 85
'DGKI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S988.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DGKI MUTATED 11 7 11 4
DGKI WILD-TYPE 72 74 67 44
'DGKI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S989.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DGKI MUTATED 3 7 7 14 1
DGKI WILD-TYPE 38 72 61 72 5
'DGKI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S990.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DGKI MUTATED 9 16 5 2
DGKI WILD-TYPE 70 94 50 34
'DGKI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DGKI MUTATED 8 6 17
DGKI WILD-TYPE 67 80 91
'DGKI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S992.  Gene #100: 'DGKI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DGKI MUTATED 19 10 2
DGKI WILD-TYPE 114 98 26
'SNRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S993.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SNRK MUTATED 5 4 1
SNRK WILD-TYPE 71 105 104
'SNRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S994.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SNRK MUTATED 2 6 2
SNRK WILD-TYPE 96 110 74
'SNRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S995.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SNRK MUTATED 2 2 2 2
SNRK WILD-TYPE 45 56 24 36
'SNRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S996.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SNRK MUTATED 1 5 0 2
SNRK WILD-TYPE 26 53 35 47
'SNRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S997.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SNRK MUTATED 2 4 4
SNRK WILD-TYPE 101 82 97
'SNRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S998.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SNRK MUTATED 1 4 3 2
SNRK WILD-TYPE 82 77 75 46
'SNRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S999.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SNRK MUTATED 2 3 2 2 1
SNRK WILD-TYPE 39 76 66 84 5
'SNRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1000.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SNRK MUTATED 3 4 2 1
SNRK WILD-TYPE 76 106 53 35
'SNRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SNRK MUTATED 3 2 5
SNRK WILD-TYPE 72 84 103
'SNRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'SNRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SNRK MUTATED 4 5 1
SNRK WILD-TYPE 129 103 27
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1003.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTPRT MUTATED 23 35 28
PTPRT WILD-TYPE 53 74 77
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 1

Table S1004.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTPRT MUTATED 38 31 17
PTPRT WILD-TYPE 60 85 59

Figure S59.  Get High-res Image Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1005.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PTPRT MUTATED 16 21 4 13
PTPRT WILD-TYPE 31 37 22 25
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1006.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTPRT MUTATED 7 19 12 16
PTPRT WILD-TYPE 20 39 23 33
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1007.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTPRT MUTATED 30 28 28
PTPRT WILD-TYPE 73 58 73
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1008.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTPRT MUTATED 24 23 26 13
PTPRT WILD-TYPE 59 58 52 35
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1009.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PTPRT MUTATED 9 20 24 29 2
PTPRT WILD-TYPE 32 59 44 57 4
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1010.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PTPRT MUTATED 23 39 15 7
PTPRT WILD-TYPE 56 71 40 29
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S1011.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PTPRT MUTATED 24 19 40
PTPRT WILD-TYPE 51 67 68
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PTPRT MUTATED 50 28 5
PTPRT WILD-TYPE 83 80 23

Figure S60.  Get High-res Image Gene #102: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MYH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S1013.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYH1 MUTATED 18 32 19
MYH1 WILD-TYPE 58 77 86
'MYH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.94

Table S1014.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYH1 MUTATED 28 31 10
MYH1 WILD-TYPE 70 85 66

Figure S61.  Get High-res Image Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1015.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MYH1 MUTATED 13 16 3 10
MYH1 WILD-TYPE 34 42 23 28
'MYH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1016.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYH1 MUTATED 4 13 9 16
MYH1 WILD-TYPE 23 45 26 33
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1017.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYH1 MUTATED 21 26 22
MYH1 WILD-TYPE 82 60 79
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1018.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYH1 MUTATED 16 18 21 14
MYH1 WILD-TYPE 67 63 57 34
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1019.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MYH1 MUTATED 9 16 18 20 1
MYH1 WILD-TYPE 32 63 50 66 5
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1020.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MYH1 MUTATED 20 23 12 9
MYH1 WILD-TYPE 59 87 43 27
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MYH1 MUTATED 16 16 31
MYH1 WILD-TYPE 59 70 77
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'MYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MYH1 MUTATED 33 22 8
MYH1 WILD-TYPE 100 86 20
'ZNF595 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1023.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF595 MUTATED 2 2 4
ZNF595 WILD-TYPE 74 107 101
'ZNF595 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1024.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF595 MUTATED 5 1 2
ZNF595 WILD-TYPE 93 115 74
'ZNF595 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1025.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ZNF595 MUTATED 0 3 1 1
ZNF595 WILD-TYPE 47 55 25 37
'ZNF595 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1026.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZNF595 MUTATED 0 1 1 3
ZNF595 WILD-TYPE 27 57 34 46
'ZNF595 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1027.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF595 MUTATED 1 3 4
ZNF595 WILD-TYPE 102 83 97
'ZNF595 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1028.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF595 MUTATED 1 3 4 0
ZNF595 WILD-TYPE 82 78 74 48
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1029.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZNF595 MUTATED 1 1 4 2 0
ZNF595 WILD-TYPE 40 78 64 84 6
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1030.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZNF595 MUTATED 1 4 3 0
ZNF595 WILD-TYPE 78 106 52 36
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1031.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZNF595 MUTATED 1 1 6
ZNF595 WILD-TYPE 74 85 102
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1032.  Gene #104: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZNF595 MUTATED 5 3 0
ZNF595 WILD-TYPE 128 105 28
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1033.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OR51S1 MUTATED 7 13 10
OR51S1 WILD-TYPE 69 96 95
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1034.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OR51S1 MUTATED 9 14 7
OR51S1 WILD-TYPE 89 102 69
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1035.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
OR51S1 MUTATED 4 8 2 5
OR51S1 WILD-TYPE 43 50 24 33
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1036.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OR51S1 MUTATED 1 5 4 9
OR51S1 WILD-TYPE 26 53 31 40
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1037.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OR51S1 MUTATED 9 12 9
OR51S1 WILD-TYPE 94 74 92
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1038.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OR51S1 MUTATED 7 10 6 7
OR51S1 WILD-TYPE 76 71 72 41
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1039.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
OR51S1 MUTATED 2 7 8 10 2
OR51S1 WILD-TYPE 39 72 60 76 4
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1040.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
OR51S1 MUTATED 10 12 4 3
OR51S1 WILD-TYPE 69 98 51 33
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
OR51S1 MUTATED 12 5 12
OR51S1 WILD-TYPE 63 81 96
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1042.  Gene #105: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
OR51S1 MUTATED 18 10 1
OR51S1 WILD-TYPE 115 98 27
'CABP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1043.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CABP7 MUTATED 3 1 1
CABP7 WILD-TYPE 73 108 104
'CABP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1044.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CABP7 MUTATED 1 2 2
CABP7 WILD-TYPE 97 114 74
'CABP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1045.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CABP7 MUTATED 2 1 1 0
CABP7 WILD-TYPE 45 57 25 38
'CABP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1046.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CABP7 MUTATED 2 1 1 0
CABP7 WILD-TYPE 25 57 34 49
'CABP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 1

Table S1047.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CABP7 MUTATED 4 1 0
CABP7 WILD-TYPE 99 85 101
'CABP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1048.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CABP7 MUTATED 4 1 0 0
CABP7 WILD-TYPE 79 80 78 48
'CABP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1049.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CABP7 MUTATED 0 1 2 2 0
CABP7 WILD-TYPE 41 78 66 84 6
'CABP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00776 (Fisher's exact test), Q value = 0.62

Table S1050.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CABP7 MUTATED 5 0 0 0
CABP7 WILD-TYPE 74 110 55 36

Figure S62.  Get High-res Image Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CABP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CABP7 MUTATED 3 0 2
CABP7 WILD-TYPE 72 86 106
'CABP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'CABP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CABP7 MUTATED 4 1 0
CABP7 WILD-TYPE 129 107 28
'DSP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 1

Table S1053.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DSP MUTATED 22 22 16
DSP WILD-TYPE 54 87 89
'DSP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S1054.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DSP MUTATED 24 21 15
DSP WILD-TYPE 74 95 61
'DSP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1055.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DSP MUTATED 8 14 4 14
DSP WILD-TYPE 39 44 22 24
'DSP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1056.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DSP MUTATED 7 13 7 13
DSP WILD-TYPE 20 45 28 36
'DSP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1057.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DSP MUTATED 20 23 17
DSP WILD-TYPE 83 63 84
'DSP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1058.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DSP MUTATED 18 18 13 11
DSP WILD-TYPE 65 63 65 37
'DSP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1059.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DSP MUTATED 9 14 17 18 0
DSP WILD-TYPE 32 65 51 68 6
'DSP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1060.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DSP MUTATED 16 27 9 6
DSP WILD-TYPE 63 83 46 30
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DSP MUTATED 16 16 26
DSP WILD-TYPE 59 70 82
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S1062.  Gene #107: 'DSP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DSP MUTATED 35 18 5
DSP WILD-TYPE 98 90 23
'AMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1063.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
AMPD3 MUTATED 6 11 5
AMPD3 WILD-TYPE 70 98 100
'AMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1064.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
AMPD3 MUTATED 11 9 2
AMPD3 WILD-TYPE 87 107 74
'AMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1065.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
AMPD3 MUTATED 5 4 0 6
AMPD3 WILD-TYPE 42 54 26 32
'AMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1066.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
AMPD3 MUTATED 2 7 4 2
AMPD3 WILD-TYPE 25 51 31 47
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1067.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
AMPD3 MUTATED 9 8 5
AMPD3 WILD-TYPE 94 78 96
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1068.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
AMPD3 MUTATED 7 5 4 6
AMPD3 WILD-TYPE 76 76 74 42
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1069.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
AMPD3 MUTATED 3 6 4 6 1
AMPD3 WILD-TYPE 38 73 64 80 5
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1070.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
AMPD3 MUTATED 6 10 2 2
AMPD3 WILD-TYPE 73 100 53 34
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1071.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
AMPD3 MUTATED 6 5 9
AMPD3 WILD-TYPE 69 81 99
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
AMPD3 MUTATED 12 6 2
AMPD3 WILD-TYPE 121 102 26
'NUDT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1073.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NUDT4 MUTATED 2 2 1
NUDT4 WILD-TYPE 74 107 104
'NUDT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1074.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NUDT4 MUTATED 3 2 0
NUDT4 WILD-TYPE 95 114 76
'NUDT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1075.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NUDT4 MUTATED 3 2 0 0
NUDT4 WILD-TYPE 44 56 26 38
'NUDT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S1076.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NUDT4 MUTATED 2 2 1 0
NUDT4 WILD-TYPE 25 56 34 49
'NUDT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1077.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NUDT4 MUTATED 1 1 3
NUDT4 WILD-TYPE 102 85 98
'NUDT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1078.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NUDT4 MUTATED 2 1 2 0
NUDT4 WILD-TYPE 81 80 76 48
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1079.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NUDT4 MUTATED 1 1 3 0 0
NUDT4 WILD-TYPE 40 78 65 86 6
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1080.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NUDT4 MUTATED 2 0 2 1
NUDT4 WILD-TYPE 77 110 53 35
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NUDT4 MUTATED 1 1 3
NUDT4 WILD-TYPE 74 85 105
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NUDT4 MUTATED 1 3 1
NUDT4 WILD-TYPE 132 105 27
'UPB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1083.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UPB1 MUTATED 3 3 7
UPB1 WILD-TYPE 73 106 98
'UPB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1084.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UPB1 MUTATED 8 4 1
UPB1 WILD-TYPE 90 112 75
'UPB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1085.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
UPB1 MUTATED 3 1 1 0
UPB1 WILD-TYPE 44 57 25 38
'UPB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1086.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
UPB1 MUTATED 2 0 1 2
UPB1 WILD-TYPE 25 58 34 47
'UPB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 1

Table S1087.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UPB1 MUTATED 4 1 8
UPB1 WILD-TYPE 99 85 93
'UPB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1088.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UPB1 MUTATED 5 4 4 0
UPB1 WILD-TYPE 78 77 74 48
'UPB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1089.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UPB1 MUTATED 1 3 3 6 0
UPB1 WILD-TYPE 40 76 65 80 6
'UPB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1090.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UPB1 MUTATED 3 7 2 1
UPB1 WILD-TYPE 76 103 53 35
'UPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UPB1 MUTATED 2 3 7
UPB1 WILD-TYPE 73 83 101
'UPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'UPB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UPB1 MUTATED 6 6 0
UPB1 WILD-TYPE 127 102 28
'CEBPZ MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1093.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CEBPZ MUTATED 1 1 1
CEBPZ WILD-TYPE 75 108 104
'CEBPZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S1094.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CEBPZ MUTATED 1 2 0
CEBPZ WILD-TYPE 97 114 76
'CEBPZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1095.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CEBPZ MUTATED 2 1 0
CEBPZ WILD-TYPE 101 85 101
'CEBPZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1096.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CEBPZ MUTATED 1 1 0 1
CEBPZ WILD-TYPE 82 80 78 47
'CEBPZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1097.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CEBPZ MUTATED 0 1 1 1 0
CEBPZ WILD-TYPE 41 78 67 85 6
'CEBPZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1098.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CEBPZ MUTATED 1 2 0 0
CEBPZ WILD-TYPE 78 108 55 36
'CEBPZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1099.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CEBPZ MUTATED 1 0 2
CEBPZ WILD-TYPE 74 86 106
'CEBPZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1100.  Gene #111: 'CEBPZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CEBPZ MUTATED 2 1 0
CEBPZ WILD-TYPE 131 107 28
'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 1

Table S1101.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTPRF MUTATED 5 16 6
PTPRF WILD-TYPE 71 93 99
'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.8

Table S1102.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTPRF MUTATED 8 17 2
PTPRF WILD-TYPE 90 99 74

Figure S63.  Get High-res Image Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1103.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PTPRF MUTATED 8 5 1 2
PTPRF WILD-TYPE 39 53 25 36
'PTPRF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1104.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTPRF MUTATED 2 6 4 4
PTPRF WILD-TYPE 25 52 31 45
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1105.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTPRF MUTATED 9 11 7
PTPRF WILD-TYPE 94 75 94
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1106.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTPRF MUTATED 6 8 6 7
PTPRF WILD-TYPE 77 73 72 41
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1107.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PTPRF MUTATED 3 10 7 5 1
PTPRF WILD-TYPE 38 69 61 81 5
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1108.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PTPRF MUTATED 6 10 7 3
PTPRF WILD-TYPE 73 100 48 33
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1109.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PTPRF MUTATED 8 9 9
PTPRF WILD-TYPE 67 77 99
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1110.  Gene #112: 'PTPRF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PTPRF MUTATED 11 13 2
PTPRF WILD-TYPE 122 95 26
'GTPBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1111.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GTPBP4 MUTATED 3 3 2
GTPBP4 WILD-TYPE 73 106 103
'GTPBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S1112.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GTPBP4 MUTATED 4 3 1
GTPBP4 WILD-TYPE 94 113 75
'GTPBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1113.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GTPBP4 MUTATED 0 2 0 1
GTPBP4 WILD-TYPE 47 56 26 37
'GTPBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1114.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GTPBP4 MUTATED 0 3 0 0
GTPBP4 WILD-TYPE 27 55 35 49
'GTPBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S1115.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GTPBP4 MUTATED 1 4 3
GTPBP4 WILD-TYPE 102 82 98
'GTPBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1116.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GTPBP4 MUTATED 1 4 3 0
GTPBP4 WILD-TYPE 82 77 75 48
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1117.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GTPBP4 MUTATED 1 4 1 2 0
GTPBP4 WILD-TYPE 40 75 67 84 6
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1118.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GTPBP4 MUTATED 2 3 2 1
GTPBP4 WILD-TYPE 77 107 53 35
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1119.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GTPBP4 MUTATED 4 3 1
GTPBP4 WILD-TYPE 71 83 107
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1120.  Gene #113: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GTPBP4 MUTATED 3 4 1
GTPBP4 WILD-TYPE 130 104 27
'DDX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1121.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDX4 MUTATED 4 7 2
DDX4 WILD-TYPE 72 102 103
'DDX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1122.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDX4 MUTATED 5 5 3
DDX4 WILD-TYPE 93 111 73
'DDX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1123.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DDX4 MUTATED 1 4 0 1
DDX4 WILD-TYPE 46 54 26 37
'DDX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S1124.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDX4 MUTATED 0 0 2 4
DDX4 WILD-TYPE 27 58 33 45
'DDX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1125.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDX4 MUTATED 7 2 4
DDX4 WILD-TYPE 96 84 97
'DDX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1126.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDX4 MUTATED 6 1 3 3
DDX4 WILD-TYPE 77 80 75 45
'DDX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1127.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DDX4 MUTATED 2 2 6 3 0
DDX4 WILD-TYPE 39 77 62 83 6
'DDX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S1128.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DDX4 MUTATED 3 5 4 1
DDX4 WILD-TYPE 76 105 51 35
'DDX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S1129.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DDX4 MUTATED 4 1 8
DDX4 WILD-TYPE 71 85 100
'DDX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1130.  Gene #114: 'DDX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DDX4 MUTATED 8 4 1
DDX4 WILD-TYPE 125 104 27
'UGT1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1131.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UGT1A3 MUTATED 3 8 3
UGT1A3 WILD-TYPE 73 101 102
'UGT1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S1132.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UGT1A3 MUTATED 5 8 1
UGT1A3 WILD-TYPE 93 108 75
'UGT1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1133.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
UGT1A3 MUTATED 4 4 0 1
UGT1A3 WILD-TYPE 43 54 26 37
'UGT1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1134.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
UGT1A3 MUTATED 2 4 0 3
UGT1A3 WILD-TYPE 25 54 35 46
'UGT1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1135.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UGT1A3 MUTATED 5 7 2
UGT1A3 WILD-TYPE 98 79 99
'UGT1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1136.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UGT1A3 MUTATED 4 6 2 2
UGT1A3 WILD-TYPE 79 75 76 46
'UGT1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1137.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UGT1A3 MUTATED 1 5 2 5 0
UGT1A3 WILD-TYPE 40 74 66 81 6
'UGT1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1138.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UGT1A3 MUTATED 5 5 2 1
UGT1A3 WILD-TYPE 74 105 53 35
'UGT1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1139.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UGT1A3 MUTATED 5 4 3
UGT1A3 WILD-TYPE 70 82 105
'UGT1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1140.  Gene #115: 'UGT1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UGT1A3 MUTATED 5 7 0
UGT1A3 WILD-TYPE 128 101 28
'MIOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1141.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MIOX MUTATED 3 2 1
MIOX WILD-TYPE 73 107 104
'MIOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1142.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MIOX MUTATED 3 3 0
MIOX WILD-TYPE 95 113 76
'MIOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1143.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MIOX MUTATED 1 1 1 0
MIOX WILD-TYPE 46 57 25 38
'MIOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1144.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MIOX MUTATED 1 1 0 1
MIOX WILD-TYPE 26 57 35 48
'MIOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1145.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MIOX MUTATED 3 2 1
MIOX WILD-TYPE 100 84 100
'MIOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1146.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MIOX MUTATED 1 1 1 3
MIOX WILD-TYPE 82 80 77 45
'MIOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1147.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MIOX MUTATED 1 2 1 2 0
MIOX WILD-TYPE 40 77 67 84 6
'MIOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1148.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MIOX MUTATED 2 2 1 1
MIOX WILD-TYPE 77 108 54 35
'MIOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1149.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MIOX MUTATED 1 1 3
MIOX WILD-TYPE 74 85 105
'MIOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1150.  Gene #116: 'MIOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MIOX MUTATED 2 2 1
MIOX WILD-TYPE 131 106 27
'PEX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1151.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PEX6 MUTATED 3 2 1
PEX6 WILD-TYPE 73 107 104
'PEX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1152.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PEX6 MUTATED 2 3 1
PEX6 WILD-TYPE 96 113 75
'PEX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1153.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PEX6 MUTATED 1 1 0 2
PEX6 WILD-TYPE 46 57 26 36
'PEX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1154.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PEX6 MUTATED 1 1 0 2
PEX6 WILD-TYPE 26 57 35 47
'PEX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S1155.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PEX6 MUTATED 3 3 0
PEX6 WILD-TYPE 100 83 101
'PEX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1156.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PEX6 MUTATED 3 2 0 1
PEX6 WILD-TYPE 80 79 78 47
'PEX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1157.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PEX6 MUTATED 0 0 2 3 0
PEX6 WILD-TYPE 41 79 66 83 6
'PEX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1158.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PEX6 MUTATED 4 1 0 0
PEX6 WILD-TYPE 75 109 55 36
'PEX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1159.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PEX6 MUTATED 2 0 3
PEX6 WILD-TYPE 73 86 105
'PEX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1160.  Gene #117: 'PEX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PEX6 MUTATED 5 0 0
PEX6 WILD-TYPE 128 108 28
'MYH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1161.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYH7 MUTATED 16 17 11
MYH7 WILD-TYPE 60 92 94
'MYH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.95

Table S1162.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYH7 MUTATED 22 15 7
MYH7 WILD-TYPE 76 101 69

Figure S64.  Get High-res Image Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1163.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MYH7 MUTATED 8 10 2 9
MYH7 WILD-TYPE 39 48 24 29
'MYH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1164.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYH7 MUTATED 5 13 4 7
MYH7 WILD-TYPE 22 45 31 42
'MYH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.94

Table S1165.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYH7 MUTATED 20 16 8
MYH7 WILD-TYPE 83 70 93

Figure S65.  Get High-res Image Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S1166.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYH7 MUTATED 18 9 7 10
MYH7 WILD-TYPE 65 72 71 38
'MYH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S1167.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MYH7 MUTATED 6 13 10 13 0
MYH7 WILD-TYPE 35 66 58 73 6
'MYH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1168.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MYH7 MUTATED 13 20 5 4
MYH7 WILD-TYPE 66 90 50 32
'MYH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1169.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MYH7 MUTATED 14 12 15
MYH7 WILD-TYPE 61 74 93
'MYH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1170.  Gene #118: 'MYH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MYH7 MUTATED 23 14 4
MYH7 WILD-TYPE 110 94 24
'ASB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1171.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ASB5 MUTATED 5 4 3
ASB5 WILD-TYPE 71 105 102
'ASB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S1172.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ASB5 MUTATED 6 3 3
ASB5 WILD-TYPE 92 113 73
'ASB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1173.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ASB5 MUTATED 3 4 0 1
ASB5 WILD-TYPE 44 54 26 37
'ASB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1174.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ASB5 MUTATED 0 5 2 1
ASB5 WILD-TYPE 27 53 33 48
'ASB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1175.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ASB5 MUTATED 5 2 5
ASB5 WILD-TYPE 98 84 96
'ASB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 1

Table S1176.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ASB5 MUTATED 6 0 3 3
ASB5 WILD-TYPE 77 81 75 45
'ASB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1177.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ASB5 MUTATED 2 3 3 4 0
ASB5 WILD-TYPE 39 76 65 82 6
'ASB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1178.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ASB5 MUTATED 2 6 3 1
ASB5 WILD-TYPE 77 104 52 35
'ASB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1179.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ASB5 MUTATED 1 3 8
ASB5 WILD-TYPE 74 83 100
'ASB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1180.  Gene #119: 'ASB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ASB5 MUTATED 6 5 1
ASB5 WILD-TYPE 127 103 27
'GSDMC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1181.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GSDMC MUTATED 3 8 5
GSDMC WILD-TYPE 73 101 100
'GSDMC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1182.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GSDMC MUTATED 4 9 3
GSDMC WILD-TYPE 94 107 73
'GSDMC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1183.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GSDMC MUTATED 4 2 0 2
GSDMC WILD-TYPE 43 56 26 36
'GSDMC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1184.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GSDMC MUTATED 2 4 1 1
GSDMC WILD-TYPE 25 54 34 48
'GSDMC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1185.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GSDMC MUTATED 7 6 3
GSDMC WILD-TYPE 96 80 98
'GSDMC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1186.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GSDMC MUTATED 6 3 4 3
GSDMC WILD-TYPE 77 78 74 45
'GSDMC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 1

Table S1187.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GSDMC MUTATED 2 6 6 1 1
GSDMC WILD-TYPE 39 73 62 85 5
'GSDMC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1188.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GSDMC MUTATED 3 7 4 2
GSDMC WILD-TYPE 76 103 51 34
'GSDMC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1189.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GSDMC MUTATED 3 5 7
GSDMC WILD-TYPE 72 81 101
'GSDMC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1190.  Gene #120: 'GSDMC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GSDMC MUTATED 8 5 2
GSDMC WILD-TYPE 125 103 26
'HLA-DRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 1

Table S1191.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HLA-DRA MUTATED 1 9 3
HLA-DRA WILD-TYPE 75 100 102
'HLA-DRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1192.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HLA-DRA MUTATED 3 7 3
HLA-DRA WILD-TYPE 95 109 73
'HLA-DRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1193.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
HLA-DRA MUTATED 5 2 1 0
HLA-DRA WILD-TYPE 42 56 25 38
'HLA-DRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S1194.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HLA-DRA MUTATED 3 3 1 1
HLA-DRA WILD-TYPE 24 55 34 48
'HLA-DRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1195.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HLA-DRA MUTATED 2 5 6
HLA-DRA WILD-TYPE 101 81 95
'HLA-DRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1196.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HLA-DRA MUTATED 3 3 5 2
HLA-DRA WILD-TYPE 80 78 73 46
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1197.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
HLA-DRA MUTATED 1 5 4 2 0
HLA-DRA WILD-TYPE 40 74 64 84 6
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1198.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
HLA-DRA MUTATED 1 5 5 1
HLA-DRA WILD-TYPE 78 105 50 35
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1199.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
HLA-DRA MUTATED 3 4 5
HLA-DRA WILD-TYPE 72 82 103
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.94

Table S1200.  Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
HLA-DRA MUTATED 2 9 1
HLA-DRA WILD-TYPE 131 99 27

Figure S66.  Get High-res Image Gene #121: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR11H12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1201.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OR11H12 MUTATED 5 6 4
OR11H12 WILD-TYPE 71 103 101
'OR11H12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1202.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OR11H12 MUTATED 4 5 6
OR11H12 WILD-TYPE 94 111 70
'OR11H12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1203.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
OR11H12 MUTATED 2 4 4 1
OR11H12 WILD-TYPE 45 54 22 37
'OR11H12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1204.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OR11H12 MUTATED 1 5 1 4
OR11H12 WILD-TYPE 26 53 34 45
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1205.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OR11H12 MUTATED 5 5 5
OR11H12 WILD-TYPE 98 81 96
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1206.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OR11H12 MUTATED 3 5 5 2
OR11H12 WILD-TYPE 80 76 73 46
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S1207.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
OR11H12 MUTATED 3 6 2 3 0
OR11H12 WILD-TYPE 38 73 66 83 6
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1208.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
OR11H12 MUTATED 3 6 3 2
OR11H12 WILD-TYPE 76 104 52 34
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1209.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
OR11H12 MUTATED 5 5 3
OR11H12 WILD-TYPE 70 81 105
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1210.  Gene #122: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
OR11H12 MUTATED 4 7 2
OR11H12 WILD-TYPE 129 101 26
'TPTE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1211.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TPTE MUTATED 16 22 26
TPTE WILD-TYPE 60 87 79
'TPTE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.94

Table S1212.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TPTE MUTATED 28 17 19
TPTE WILD-TYPE 70 99 57

Figure S67.  Get High-res Image Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TPTE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.95

Table S1213.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TPTE MUTATED 8 14 2 14
TPTE WILD-TYPE 39 44 24 24

Figure S68.  Get High-res Image Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TPTE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S1214.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TPTE MUTATED 6 13 7 12
TPTE WILD-TYPE 21 45 28 37
'TPTE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1215.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TPTE MUTATED 17 21 26
TPTE WILD-TYPE 86 65 75
'TPTE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1216.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TPTE MUTATED 17 18 20 9
TPTE WILD-TYPE 66 63 58 39
'TPTE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1217.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TPTE MUTATED 10 13 15 21 1
TPTE WILD-TYPE 31 66 53 65 5
'TPTE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1218.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TPTE MUTATED 15 24 14 7
TPTE WILD-TYPE 64 86 41 29
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1219.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TPTE MUTATED 16 16 27
TPTE WILD-TYPE 59 70 81
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1220.  Gene #123: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TPTE MUTATED 35 17 7
TPTE WILD-TYPE 98 91 21
'ASTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1221.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ASTN1 MUTATED 11 20 14
ASTN1 WILD-TYPE 65 89 91
'ASTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 1

Table S1222.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ASTN1 MUTATED 18 21 6
ASTN1 WILD-TYPE 80 95 70
'ASTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1223.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ASTN1 MUTATED 7 9 4 6
ASTN1 WILD-TYPE 40 49 22 32
'ASTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1224.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ASTN1 MUTATED 2 11 4 9
ASTN1 WILD-TYPE 25 47 31 40
'ASTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S1225.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ASTN1 MUTATED 11 20 14
ASTN1 WILD-TYPE 92 66 87
'ASTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1226.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ASTN1 MUTATED 12 16 11 6
ASTN1 WILD-TYPE 71 65 67 42
'ASTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1227.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ASTN1 MUTATED 8 9 11 12 1
ASTN1 WILD-TYPE 33 70 57 74 5
'ASTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1228.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ASTN1 MUTATED 11 15 8 7
ASTN1 WILD-TYPE 68 95 47 29
'ASTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1229.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ASTN1 MUTATED 12 11 17
ASTN1 WILD-TYPE 63 75 91
'ASTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1230.  Gene #124: 'ASTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ASTN1 MUTATED 20 14 6
ASTN1 WILD-TYPE 113 94 22
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1231.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KRAS MUTATED 4 1 1
KRAS WILD-TYPE 72 108 104
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1232.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KRAS MUTATED 3 1 2
KRAS WILD-TYPE 95 115 74
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1233.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KRAS MUTATED 0 2 0 3
KRAS WILD-TYPE 47 56 26 35
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1234.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KRAS MUTATED 0 1 1 3
KRAS WILD-TYPE 27 57 34 46
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1235.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KRAS MUTATED 4 2 0
KRAS WILD-TYPE 99 84 101
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1236.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KRAS MUTATED 4 1 0 1
KRAS WILD-TYPE 79 80 78 47
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1237.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KRAS MUTATED 1 0 3 2 0
KRAS WILD-TYPE 40 79 65 84 6
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1238.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KRAS MUTATED 4 2 0 0
KRAS WILD-TYPE 75 108 55 36
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1239.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KRAS MUTATED 2 0 3
KRAS WILD-TYPE 73 86 105
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1240.  Gene #125: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KRAS MUTATED 5 0 0
KRAS WILD-TYPE 128 108 28
'ZZZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1241.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZZZ3 MUTATED 1 0 2
ZZZ3 WILD-TYPE 75 109 103
'ZZZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1242.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZZZ3 MUTATED 1 1 1
ZZZ3 WILD-TYPE 97 115 75
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1243.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZZZ3 MUTATED 2 0 1
ZZZ3 WILD-TYPE 101 86 100
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1244.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZZZ3 MUTATED 2 0 1 0
ZZZ3 WILD-TYPE 81 81 77 48
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1245.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZZZ3 MUTATED 1 1 1 0 0
ZZZ3 WILD-TYPE 40 78 67 86 6
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1246.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZZZ3 MUTATED 0 1 1 1
ZZZ3 WILD-TYPE 79 109 54 35
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1247.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZZZ3 MUTATED 0 2 1
ZZZ3 WILD-TYPE 75 84 107
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1248.  Gene #126: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZZZ3 MUTATED 1 1 1
ZZZ3 WILD-TYPE 132 107 27
'DHX37 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1249.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DHX37 MUTATED 3 4 6
DHX37 WILD-TYPE 73 105 99
'DHX37 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0088 (Fisher's exact test), Q value = 0.66

Table S1250.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DHX37 MUTATED 9 4 0
DHX37 WILD-TYPE 89 112 76

Figure S69.  Get High-res Image Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DHX37 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1251.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DHX37 MUTATED 2 2 1 3
DHX37 WILD-TYPE 45 56 25 35
'DHX37 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1252.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DHX37 MUTATED 1 3 2 2
DHX37 WILD-TYPE 26 55 33 47
'DHX37 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1253.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DHX37 MUTATED 7 4 2
DHX37 WILD-TYPE 96 82 99
'DHX37 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1254.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DHX37 MUTATED 5 5 1 2
DHX37 WILD-TYPE 78 76 77 46
'DHX37 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1255.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DHX37 MUTATED 2 3 3 4 0
DHX37 WILD-TYPE 39 76 65 82 6
'DHX37 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1256.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DHX37 MUTATED 4 5 2 1
DHX37 WILD-TYPE 75 105 53 35
'DHX37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1257.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DHX37 MUTATED 4 2 6
DHX37 WILD-TYPE 71 84 102
'DHX37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1258.  Gene #127: 'DHX37 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DHX37 MUTATED 7 4 1
DHX37 WILD-TYPE 126 104 27
'NTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1259.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NTN4 MUTATED 4 7 4
NTN4 WILD-TYPE 72 102 101
'NTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1260.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NTN4 MUTATED 2 9 4
NTN4 WILD-TYPE 96 107 72
'NTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1261.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NTN4 MUTATED 3 3 0 3
NTN4 WILD-TYPE 44 55 26 35
'NTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1262.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NTN4 MUTATED 2 4 2 1
NTN4 WILD-TYPE 25 54 33 48
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S1263.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NTN4 MUTATED 6 4 5
NTN4 WILD-TYPE 97 82 96
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S1264.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NTN4 MUTATED 4 3 5 3
NTN4 WILD-TYPE 79 78 73 45
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1265.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NTN4 MUTATED 1 5 5 4 0
NTN4 WILD-TYPE 40 74 63 82 6
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1266.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NTN4 MUTATED 6 3 5 1
NTN4 WILD-TYPE 73 107 50 35
'NTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1267.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NTN4 MUTATED 5 4 6
NTN4 WILD-TYPE 70 82 102
'NTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1268.  Gene #128: 'NTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NTN4 MUTATED 7 7 1
NTN4 WILD-TYPE 126 101 27
'ACD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1269.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACD MUTATED 2 3 5
ACD WILD-TYPE 74 106 100
'ACD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1270.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACD MUTATED 3 4 3
ACD WILD-TYPE 95 112 73
'ACD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1271.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ACD MUTATED 3 3 1 1
ACD WILD-TYPE 44 55 25 37
'ACD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1272.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ACD MUTATED 1 4 2 1
ACD WILD-TYPE 26 54 33 48
'ACD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1273.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACD MUTATED 3 2 5
ACD WILD-TYPE 100 84 96
'ACD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1274.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACD MUTATED 2 2 5 1
ACD WILD-TYPE 81 79 73 47
'ACD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1275.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ACD MUTATED 0 3 5 2 0
ACD WILD-TYPE 41 76 63 84 6
'ACD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1276.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ACD MUTATED 2 3 5 0
ACD WILD-TYPE 77 107 50 36
'ACD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1277.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ACD MUTATED 2 3 5
ACD WILD-TYPE 73 83 103
'ACD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1278.  Gene #129: 'ACD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ACD MUTATED 5 5 0
ACD WILD-TYPE 128 103 28
'UBL7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1279.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UBL7 MUTATED 4 3 3
UBL7 WILD-TYPE 72 106 102
'UBL7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1280.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UBL7 MUTATED 5 3 2
UBL7 WILD-TYPE 93 113 74
'UBL7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1281.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
UBL7 MUTATED 1 1 0 1
UBL7 WILD-TYPE 46 57 26 37
'UBL7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1282.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
UBL7 MUTATED 0 1 1 1
UBL7 WILD-TYPE 27 57 34 48
'UBL7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1283.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UBL7 MUTATED 4 3 3
UBL7 WILD-TYPE 99 83 98
'UBL7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1284.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UBL7 MUTATED 4 3 2 1
UBL7 WILD-TYPE 79 78 76 47
'UBL7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1285.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UBL7 MUTATED 0 3 2 4 0
UBL7 WILD-TYPE 41 76 66 82 6
'UBL7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1286.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UBL7 MUTATED 2 4 3 0
UBL7 WILD-TYPE 77 106 52 36
'UBL7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1287.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UBL7 MUTATED 2 3 3
UBL7 WILD-TYPE 73 83 105
'UBL7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1288.  Gene #130: 'UBL7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UBL7 MUTATED 4 4 0
UBL7 WILD-TYPE 129 104 28
'GNA11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1289.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GNA11 MUTATED 1 3 4
GNA11 WILD-TYPE 75 106 101
'GNA11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1290.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GNA11 MUTATED 3 2 3
GNA11 WILD-TYPE 95 114 73
'GNA11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1291.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GNA11 MUTATED 1 1 1 0
GNA11 WILD-TYPE 46 57 25 38
'GNA11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1292.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GNA11 MUTATED 0 1 1 1
GNA11 WILD-TYPE 27 57 34 48
'GNA11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1293.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GNA11 MUTATED 3 2 3
GNA11 WILD-TYPE 100 84 98
'GNA11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1294.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GNA11 MUTATED 3 3 2 0
GNA11 WILD-TYPE 80 78 76 48
'GNA11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1295.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GNA11 MUTATED 0 3 2 2 0
GNA11 WILD-TYPE 41 76 66 84 6
'GNA11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1296.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GNA11 MUTATED 1 3 3 0
GNA11 WILD-TYPE 78 107 52 36
'GNA11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1297.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GNA11 MUTATED 3 2 2
GNA11 WILD-TYPE 72 84 106
'GNA11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1298.  Gene #131: 'GNA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GNA11 MUTATED 3 4 0
GNA11 WILD-TYPE 130 104 28
'SF3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1299.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SF3B1 MUTATED 6 6 3
SF3B1 WILD-TYPE 70 103 102
'SF3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1300.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SF3B1 MUTATED 8 4 3
SF3B1 WILD-TYPE 90 112 73
'SF3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.94

Table S1301.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SF3B1 MUTATED 0 3 3 5
SF3B1 WILD-TYPE 47 55 23 33

Figure S70.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SF3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1302.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SF3B1 MUTATED 0 5 3 3
SF3B1 WILD-TYPE 27 53 32 46
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.95

Table S1303.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SF3B1 MUTATED 7 7 1
SF3B1 WILD-TYPE 96 79 100

Figure S71.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.78

Table S1304.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SF3B1 MUTATED 5 4 0 6
SF3B1 WILD-TYPE 78 77 78 42

Figure S72.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.92

Table S1305.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SF3B1 MUTATED 3 0 3 9 0
SF3B1 WILD-TYPE 38 79 65 77 6

Figure S73.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1306.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SF3B1 MUTATED 4 9 0 2
SF3B1 WILD-TYPE 75 101 55 34
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00596 (Fisher's exact test), Q value = 0.56

Table S1307.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SF3B1 MUTATED 5 0 10
SF3B1 WILD-TYPE 70 86 98

Figure S74.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.2

Table S1308.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SF3B1 MUTATED 14 0 1
SF3B1 WILD-TYPE 119 108 27

Figure S75.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR4M1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1309.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OR4M1 MUTATED 10 14 9
OR4M1 WILD-TYPE 66 95 96
'OR4M1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1310.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OR4M1 MUTATED 11 16 6
OR4M1 WILD-TYPE 87 100 70
'OR4M1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1311.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
OR4M1 MUTATED 5 7 4 5
OR4M1 WILD-TYPE 42 51 22 33
'OR4M1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1312.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OR4M1 MUTATED 2 6 4 9
OR4M1 WILD-TYPE 25 52 31 40
'OR4M1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1313.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OR4M1 MUTATED 13 12 8
OR4M1 WILD-TYPE 90 74 93
'OR4M1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1314.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OR4M1 MUTATED 10 9 7 7
OR4M1 WILD-TYPE 73 72 71 41
'OR4M1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1315.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
OR4M1 MUTATED 4 8 7 13 0
OR4M1 WILD-TYPE 37 71 61 73 6
'OR4M1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S1316.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
OR4M1 MUTATED 11 12 5 4
OR4M1 WILD-TYPE 68 98 50 32
'OR4M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1317.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
OR4M1 MUTATED 10 8 13
OR4M1 WILD-TYPE 65 78 95
'OR4M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1318.  Gene #133: 'OR4M1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
OR4M1 MUTATED 16 12 3
OR4M1 WILD-TYPE 117 96 25
'DPYD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1319.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DPYD MUTATED 17 20 19
DPYD WILD-TYPE 59 89 86
'DPYD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1320.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DPYD MUTATED 21 20 15
DPYD WILD-TYPE 77 96 61
'DPYD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S1321.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DPYD MUTATED 9 12 6 8
DPYD WILD-TYPE 38 46 20 30
'DPYD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1322.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DPYD MUTATED 4 14 6 11
DPYD WILD-TYPE 23 44 29 38
'DPYD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1323.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DPYD MUTATED 17 19 20
DPYD WILD-TYPE 86 67 81
'DPYD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1324.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DPYD MUTATED 13 17 16 10
DPYD WILD-TYPE 70 64 62 38
'DPYD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1325.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DPYD MUTATED 8 9 16 19 1
DPYD WILD-TYPE 33 70 52 67 5
'DPYD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S1326.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DPYD MUTATED 14 23 10 6
DPYD WILD-TYPE 65 87 45 30
'DPYD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S1327.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DPYD MUTATED 17 10 26
DPYD WILD-TYPE 58 76 82
'DPYD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1328.  Gene #134: 'DPYD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DPYD MUTATED 31 18 4
DPYD WILD-TYPE 102 90 24
'CAMK1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1329.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CAMK1D MUTATED 5 7 2
CAMK1D WILD-TYPE 71 102 103
'CAMK1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1330.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CAMK1D MUTATED 7 5 2
CAMK1D WILD-TYPE 91 111 74
'CAMK1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1331.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CAMK1D MUTATED 3 1 0 3
CAMK1D WILD-TYPE 44 57 26 35
'CAMK1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1332.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CAMK1D MUTATED 1 3 0 3
CAMK1D WILD-TYPE 26 55 35 46
'CAMK1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1333.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CAMK1D MUTATED 7 1 6
CAMK1D WILD-TYPE 96 85 95
'CAMK1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1334.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CAMK1D MUTATED 5 1 5 3
CAMK1D WILD-TYPE 78 80 73 45
'CAMK1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S1335.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CAMK1D MUTATED 2 5 3 4 0
CAMK1D WILD-TYPE 39 74 65 82 6
'CAMK1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1336.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CAMK1D MUTATED 2 7 4 1
CAMK1D WILD-TYPE 77 103 51 35
'CAMK1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S1337.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CAMK1D MUTATED 3 4 6
CAMK1D WILD-TYPE 72 82 102
'CAMK1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1338.  Gene #135: 'CAMK1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CAMK1D MUTATED 6 6 1
CAMK1D WILD-TYPE 127 102 27
'RUNX1T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 1

Table S1339.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RUNX1T1 MUTATED 5 19 12
RUNX1T1 WILD-TYPE 71 90 93
'RUNX1T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.8

Table S1340.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RUNX1T1 MUTATED 17 16 3
RUNX1T1 WILD-TYPE 81 100 73

Figure S76.  Get High-res Image Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUNX1T1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1341.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RUNX1T1 MUTATED 7 8 2 3
RUNX1T1 WILD-TYPE 40 50 24 35
'RUNX1T1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1342.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RUNX1T1 MUTATED 6 6 3 5
RUNX1T1 WILD-TYPE 21 52 32 44
'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1343.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RUNX1T1 MUTATED 13 12 11
RUNX1T1 WILD-TYPE 90 74 90
'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1344.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RUNX1T1 MUTATED 15 9 6 6
RUNX1T1 WILD-TYPE 68 72 72 42
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1345.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RUNX1T1 MUTATED 4 7 11 14 0
RUNX1T1 WILD-TYPE 37 72 57 72 6
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1346.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RUNX1T1 MUTATED 12 15 7 2
RUNX1T1 WILD-TYPE 67 95 48 34
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1347.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RUNX1T1 MUTATED 9 8 19
RUNX1T1 WILD-TYPE 66 78 89
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1348.  Gene #136: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RUNX1T1 MUTATED 22 12 2
RUNX1T1 WILD-TYPE 111 96 26
'NFATC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S1349.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NFATC4 MUTATED 3 8 6
NFATC4 WILD-TYPE 73 101 99
'NFATC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1350.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NFATC4 MUTATED 7 8 2
NFATC4 WILD-TYPE 91 108 74
'NFATC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1351.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NFATC4 MUTATED 4 3 2 2
NFATC4 WILD-TYPE 43 55 24 36
'NFATC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1352.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NFATC4 MUTATED 3 2 3 3
NFATC4 WILD-TYPE 24 56 32 46
'NFATC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1353.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NFATC4 MUTATED 8 3 6
NFATC4 WILD-TYPE 95 83 95
'NFATC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1354.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NFATC4 MUTATED 8 1 5 3
NFATC4 WILD-TYPE 75 80 73 45
'NFATC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1355.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NFATC4 MUTATED 0 7 5 5 0
NFATC4 WILD-TYPE 41 72 63 81 6
'NFATC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1356.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NFATC4 MUTATED 3 8 6 0
NFATC4 WILD-TYPE 76 102 49 36
'NFATC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1357.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NFATC4 MUTATED 3 4 10
NFATC4 WILD-TYPE 72 82 98
'NFATC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1358.  Gene #137: 'NFATC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NFATC4 MUTATED 10 7 0
NFATC4 WILD-TYPE 123 101 28
'C2ORF16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00307 (Fisher's exact test), Q value = 0.52

Table S1359.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C2ORF16 MUTATED 13 13 3
C2ORF16 WILD-TYPE 63 96 102

Figure S77.  Get High-res Image Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C2ORF16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1360.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C2ORF16 MUTATED 11 12 6
C2ORF16 WILD-TYPE 87 104 70
'C2ORF16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1361.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
C2ORF16 MUTATED 3 10 2 3
C2ORF16 WILD-TYPE 44 48 24 35
'C2ORF16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 1

Table S1362.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C2ORF16 MUTATED 0 8 2 8
C2ORF16 WILD-TYPE 27 50 33 41
'C2ORF16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1363.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C2ORF16 MUTATED 11 12 6
C2ORF16 WILD-TYPE 92 74 95
'C2ORF16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1364.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C2ORF16 MUTATED 4 10 7 8
C2ORF16 WILD-TYPE 79 71 71 40
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1365.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
C2ORF16 MUTATED 5 3 10 10 0
C2ORF16 WILD-TYPE 36 76 58 76 6
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1366.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
C2ORF16 MUTATED 10 12 3 3
C2ORF16 WILD-TYPE 69 98 52 33
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.92

Table S1367.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
C2ORF16 MUTATED 9 3 16
C2ORF16 WILD-TYPE 66 83 92

Figure S78.  Get High-res Image Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1368.  Gene #138: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
C2ORF16 MUTATED 19 7 2
C2ORF16 WILD-TYPE 114 101 26
'ALDH5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1369.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ALDH5A1 MUTATED 2 5 3
ALDH5A1 WILD-TYPE 74 104 102
'ALDH5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 1

Table S1370.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ALDH5A1 MUTATED 3 7 0
ALDH5A1 WILD-TYPE 95 109 76
'ALDH5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1371.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ALDH5A1 MUTATED 3 1 2 1
ALDH5A1 WILD-TYPE 44 57 24 37
'ALDH5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S1372.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ALDH5A1 MUTATED 1 2 2 2
ALDH5A1 WILD-TYPE 26 56 33 47
'ALDH5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.85

Table S1373.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ALDH5A1 MUTATED 4 6 0
ALDH5A1 WILD-TYPE 99 80 101

Figure S79.  Get High-res Image Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.81

Table S1374.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ALDH5A1 MUTATED 2 3 0 5
ALDH5A1 WILD-TYPE 81 78 78 43

Figure S80.  Get High-res Image Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1375.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ALDH5A1 MUTATED 2 2 2 4 0
ALDH5A1 WILD-TYPE 39 77 66 82 6
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1376.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ALDH5A1 MUTATED 3 5 0 2
ALDH5A1 WILD-TYPE 76 105 55 34
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 1

Table S1377.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ALDH5A1 MUTATED 6 1 3
ALDH5A1 WILD-TYPE 69 85 105
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1378.  Gene #139: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ALDH5A1 MUTATED 6 2 2
ALDH5A1 WILD-TYPE 127 106 26
'KCNB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1379.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KCNB2 MUTATED 14 27 18
KCNB2 WILD-TYPE 62 82 87
'KCNB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.94

Table S1380.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KCNB2 MUTATED 25 26 8
KCNB2 WILD-TYPE 73 90 68

Figure S81.  Get High-res Image Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1381.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KCNB2 MUTATED 13 10 10 8
KCNB2 WILD-TYPE 34 48 16 30
'KCNB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1382.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KCNB2 MUTATED 9 11 8 13
KCNB2 WILD-TYPE 18 47 27 36
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1383.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KCNB2 MUTATED 24 19 16
KCNB2 WILD-TYPE 79 67 85
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 1

Table S1384.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KCNB2 MUTATED 16 12 14 17
KCNB2 WILD-TYPE 67 69 64 31

Figure S82.  Get High-res Image Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1385.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KCNB2 MUTATED 12 14 15 16 0
KCNB2 WILD-TYPE 29 65 53 70 6
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1386.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KCNB2 MUTATED 13 24 9 11
KCNB2 WILD-TYPE 66 86 46 25
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1387.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KCNB2 MUTATED 18 16 22
KCNB2 WILD-TYPE 57 70 86
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1388.  Gene #140: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KCNB2 MUTATED 31 17 8
KCNB2 WILD-TYPE 102 91 20
'NAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1389.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NAP1L2 MUTATED 8 11 6
NAP1L2 WILD-TYPE 68 98 99
'NAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1390.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NAP1L2 MUTATED 8 10 7
NAP1L2 WILD-TYPE 90 106 69
'NAP1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1391.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NAP1L2 MUTATED 5 5 1 5
NAP1L2 WILD-TYPE 42 53 25 33
'NAP1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S1392.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NAP1L2 MUTATED 4 4 4 4
NAP1L2 WILD-TYPE 23 54 31 45
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1393.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NAP1L2 MUTATED 11 8 6
NAP1L2 WILD-TYPE 92 78 95
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1394.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NAP1L2 MUTATED 9 7 4 5
NAP1L2 WILD-TYPE 74 74 74 43
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1395.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NAP1L2 MUTATED 3 4 6 10 0
NAP1L2 WILD-TYPE 38 75 62 76 6
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1396.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NAP1L2 MUTATED 5 11 5 2
NAP1L2 WILD-TYPE 74 99 50 34
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.55

Table S1397.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NAP1L2 MUTATED 13 3 6
NAP1L2 WILD-TYPE 62 83 102

Figure S83.  Get High-res Image Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1398.  Gene #141: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NAP1L2 MUTATED 13 8 1
NAP1L2 WILD-TYPE 120 100 27
'C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1399.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C3 MUTATED 9 12 15
C3 WILD-TYPE 67 97 90
'C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.95

Table S1400.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C3 MUTATED 19 11 6
C3 WILD-TYPE 79 105 70

Figure S84.  Get High-res Image Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1401.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
C3 MUTATED 6 10 2 8
C3 WILD-TYPE 41 48 24 30
'C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1402.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C3 MUTATED 4 9 7 6
C3 WILD-TYPE 23 49 28 43
'C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1403.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C3 MUTATED 11 14 11
C3 WILD-TYPE 92 72 90
'C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1404.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C3 MUTATED 12 8 7 9
C3 WILD-TYPE 71 73 71 39
'C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1405.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
C3 MUTATED 6 9 11 9 0
C3 WILD-TYPE 35 70 57 77 6
'C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1406.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
C3 MUTATED 9 15 6 5
C3 WILD-TYPE 70 95 49 31
'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1407.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
C3 MUTATED 9 8 18
C3 WILD-TYPE 66 78 90
'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1408.  Gene #142: 'C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
C3 MUTATED 17 13 5
C3 WILD-TYPE 116 95 23
'RUFY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1409.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RUFY4 MUTATED 4 3 4
RUFY4 WILD-TYPE 72 106 101
'RUFY4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1410.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RUFY4 MUTATED 7 3 1
RUFY4 WILD-TYPE 91 113 75
'RUFY4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1411.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RUFY4 MUTATED 0 4 0 2
RUFY4 WILD-TYPE 47 54 26 36
'RUFY4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1412.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RUFY4 MUTATED 0 2 1 3
RUFY4 WILD-TYPE 27 56 34 46
'RUFY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1413.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RUFY4 MUTATED 5 2 4
RUFY4 WILD-TYPE 98 84 97
'RUFY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1414.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RUFY4 MUTATED 4 2 3 2
RUFY4 WILD-TYPE 79 79 75 46
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1415.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RUFY4 MUTATED 1 2 2 6 0
RUFY4 WILD-TYPE 40 77 66 80 6
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1416.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RUFY4 MUTATED 6 3 1 1
RUFY4 WILD-TYPE 73 107 54 35
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1417.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RUFY4 MUTATED 3 3 5
RUFY4 WILD-TYPE 72 83 103
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1418.  Gene #143: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RUFY4 MUTATED 7 3 1
RUFY4 WILD-TYPE 126 105 27
'IL32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1419.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IL32 MUTATED 2 3 4
IL32 WILD-TYPE 74 106 101
'IL32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1420.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IL32 MUTATED 5 2 2
IL32 WILD-TYPE 93 114 74
'IL32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1421.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IL32 MUTATED 3 4 2
IL32 WILD-TYPE 100 82 99
'IL32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1422.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IL32 MUTATED 3 3 2 1
IL32 WILD-TYPE 80 78 76 47
'IL32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1423.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IL32 MUTATED 0 3 5 1 0
IL32 WILD-TYPE 41 76 63 85 6
'IL32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1424.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IL32 MUTATED 2 5 2 0
IL32 WILD-TYPE 77 105 53 36
'IL32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1425.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IL32 MUTATED 3 3 3
IL32 WILD-TYPE 72 83 105
'IL32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1426.  Gene #144: 'IL32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IL32 MUTATED 4 5 0
IL32 WILD-TYPE 129 103 28
'SNRNP200 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1427.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SNRNP200 MUTATED 6 7 2
SNRNP200 WILD-TYPE 70 102 103
'SNRNP200 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1428.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SNRNP200 MUTATED 7 6 2
SNRNP200 WILD-TYPE 91 110 74
'SNRNP200 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1429.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SNRNP200 MUTATED 0 3 0 3
SNRNP200 WILD-TYPE 47 55 26 35
'SNRNP200 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1430.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SNRNP200 MUTATED 0 3 0 3
SNRNP200 WILD-TYPE 27 55 35 46
'SNRNP200 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1431.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SNRNP200 MUTATED 6 7 2
SNRNP200 WILD-TYPE 97 79 99
'SNRNP200 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1432.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SNRNP200 MUTATED 6 6 1 2
SNRNP200 WILD-TYPE 77 75 77 46
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1433.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SNRNP200 MUTATED 2 6 3 3 0
SNRNP200 WILD-TYPE 39 73 65 83 6
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1434.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SNRNP200 MUTATED 5 8 0 1
SNRNP200 WILD-TYPE 74 102 55 35
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1435.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SNRNP200 MUTATED 6 3 5
SNRNP200 WILD-TYPE 69 83 103
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S1436.  Gene #145: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SNRNP200 MUTATED 8 5 1
SNRNP200 WILD-TYPE 125 103 27
'LY75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1437.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
LY75 MUTATED 9 10 11
LY75 WILD-TYPE 67 99 94
'LY75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1438.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
LY75 MUTATED 12 12 6
LY75 WILD-TYPE 86 104 70
'LY75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1439.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
LY75 MUTATED 4 6 2 5
LY75 WILD-TYPE 43 52 24 33
'LY75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1440.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
LY75 MUTATED 2 6 4 5
LY75 WILD-TYPE 25 52 31 44
'LY75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1441.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
LY75 MUTATED 14 9 7
LY75 WILD-TYPE 89 77 94
'LY75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.8

Table S1442.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
LY75 MUTATED 11 6 3 10
LY75 WILD-TYPE 72 75 75 38

Figure S85.  Get High-res Image Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LY75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1443.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
LY75 MUTATED 5 6 8 10 0
LY75 WILD-TYPE 36 73 60 76 6
'LY75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1444.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
LY75 MUTATED 9 14 3 3
LY75 WILD-TYPE 70 96 52 33
'LY75 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 1

Table S1445.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
LY75 MUTATED 7 4 16
LY75 WILD-TYPE 68 82 92
'LY75 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1446.  Gene #146: 'LY75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
LY75 MUTATED 17 8 2
LY75 WILD-TYPE 116 100 26
'PLS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1447.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PLS1 MUTATED 3 7 4
PLS1 WILD-TYPE 73 102 101
'PLS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1448.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PLS1 MUTATED 3 7 4
PLS1 WILD-TYPE 95 109 72
'PLS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1449.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PLS1 MUTATED 3 3 1 2
PLS1 WILD-TYPE 44 55 25 36
'PLS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1450.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PLS1 MUTATED 3 4 1 1
PLS1 WILD-TYPE 24 54 34 48
'PLS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1451.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PLS1 MUTATED 3 6 5
PLS1 WILD-TYPE 100 80 96
'PLS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1452.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PLS1 MUTATED 4 7 3 0
PLS1 WILD-TYPE 79 74 75 48
'PLS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1453.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PLS1 MUTATED 3 4 4 3 0
PLS1 WILD-TYPE 38 75 64 83 6
'PLS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S1454.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PLS1 MUTATED 3 6 2 3
PLS1 WILD-TYPE 76 104 53 33
'PLS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1455.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PLS1 MUTATED 6 4 4
PLS1 WILD-TYPE 69 82 104
'PLS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1456.  Gene #147: 'PLS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PLS1 MUTATED 7 5 2
PLS1 WILD-TYPE 126 103 26
'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1457.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
B2M MUTATED 1 3 1
B2M WILD-TYPE 75 106 104
'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1458.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
B2M MUTATED 2 3 0
B2M WILD-TYPE 96 113 76
'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1459.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
B2M MUTATED 2 2 0 0
B2M WILD-TYPE 45 56 26 38
'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1460.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
B2M MUTATED 1 1 0 2
B2M WILD-TYPE 26 57 35 47
'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1461.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
B2M MUTATED 1 3 1
B2M WILD-TYPE 102 83 100
'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1462.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
B2M MUTATED 2 2 0 1
B2M WILD-TYPE 81 79 78 47
'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 1

Table S1463.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
B2M MUTATED 3 1 1 0 0
B2M WILD-TYPE 38 78 67 86 6
'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1464.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
B2M MUTATED 0 3 0 2
B2M WILD-TYPE 79 107 55 34
'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1465.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
B2M MUTATED 1 2 2
B2M WILD-TYPE 74 84 106
'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S1466.  Gene #148: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
B2M MUTATED 2 1 2
B2M WILD-TYPE 131 107 26
'BRD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1467.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BRD7 MUTATED 1 4 5
BRD7 WILD-TYPE 75 105 100
'BRD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1468.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BRD7 MUTATED 3 4 3
BRD7 WILD-TYPE 95 112 73
'BRD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1469.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
BRD7 MUTATED 0 2 0 2
BRD7 WILD-TYPE 47 56 26 36
'BRD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1470.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BRD7 MUTATED 0 2 1 1
BRD7 WILD-TYPE 27 56 34 48
'BRD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1471.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BRD7 MUTATED 3 4 3
BRD7 WILD-TYPE 100 82 98
'BRD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1472.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BRD7 MUTATED 2 3 2 3
BRD7 WILD-TYPE 81 78 76 45
'BRD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1473.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
BRD7 MUTATED 1 3 2 3 0
BRD7 WILD-TYPE 40 76 66 83 6
'BRD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1474.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
BRD7 MUTATED 2 4 2 1
BRD7 WILD-TYPE 77 106 53 35
'BRD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1475.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
BRD7 MUTATED 3 2 4
BRD7 WILD-TYPE 72 84 104
'BRD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1476.  Gene #149: 'BRD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
BRD7 MUTATED 4 4 1
BRD7 WILD-TYPE 129 104 27
'DNER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.8

Table S1477.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DNER MUTATED 3 17 7
DNER WILD-TYPE 73 92 98

Figure S86.  Get High-res Image Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1478.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DNER MUTATED 8 14 5
DNER WILD-TYPE 90 102 71
'DNER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1479.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DNER MUTATED 6 5 3 4
DNER WILD-TYPE 41 53 23 34
'DNER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1480.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DNER MUTATED 3 8 3 4
DNER WILD-TYPE 24 50 32 45
'DNER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1481.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DNER MUTATED 8 10 9
DNER WILD-TYPE 95 76 92
'DNER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1482.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DNER MUTATED 7 8 6 6
DNER WILD-TYPE 76 73 72 42
'DNER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1483.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DNER MUTATED 3 11 4 8 0
DNER WILD-TYPE 38 68 64 78 6
'DNER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1484.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DNER MUTATED 6 13 5 2
DNER WILD-TYPE 73 97 50 34
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1485.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DNER MUTATED 10 7 9
DNER WILD-TYPE 65 79 99
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1486.  Gene #150: 'DNER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DNER MUTATED 12 13 1
DNER WILD-TYPE 121 95 27
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1487.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDX17 MUTATED 5 3 2
DDX17 WILD-TYPE 71 106 103
'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1488.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDX17 MUTATED 4 6 0
DDX17 WILD-TYPE 94 110 76
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1489.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DDX17 MUTATED 2 2 1 3
DDX17 WILD-TYPE 45 56 25 35
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1490.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDX17 MUTATED 1 4 1 2
DDX17 WILD-TYPE 26 54 34 47
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1491.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDX17 MUTATED 4 2 4
DDX17 WILD-TYPE 99 84 97
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1492.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDX17 MUTATED 2 1 4 3
DDX17 WILD-TYPE 81 80 74 45
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1493.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DDX17 MUTATED 4 3 1 1 0
DDX17 WILD-TYPE 37 76 67 85 6
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1494.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DDX17 MUTATED 1 4 2 2
DDX17 WILD-TYPE 78 106 53 34
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1495.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DDX17 MUTATED 2 2 5
DDX17 WILD-TYPE 73 84 103
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1496.  Gene #151: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DDX17 MUTATED 3 4 2
DDX17 WILD-TYPE 130 104 26
'SI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 1

Table S1497.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SI MUTATED 20 31 16
SI WILD-TYPE 56 78 89

Figure S87.  Get High-res Image Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1498.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SI MUTATED 25 29 13
SI WILD-TYPE 73 87 63
'SI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1499.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SI MUTATED 11 11 7 11
SI WILD-TYPE 36 47 19 27
'SI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1500.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SI MUTATED 8 10 11 11
SI WILD-TYPE 19 48 24 38
'SI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1501.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SI MUTATED 28 20 19
SI WILD-TYPE 75 66 82
'SI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1502.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SI MUTATED 24 16 15 12
SI WILD-TYPE 59 65 63 36
'SI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1503.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SI MUTATED 8 16 14 24 0
SI WILD-TYPE 33 63 54 62 6
'SI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S1504.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SI MUTATED 17 30 10 5
SI WILD-TYPE 62 80 45 31
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S1505.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SI MUTATED 13 15 32
SI WILD-TYPE 62 71 76
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1506.  Gene #152: 'SI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SI MUTATED 36 21 3
SI WILD-TYPE 97 87 25
'SLC7A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1507.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SLC7A11 MUTATED 4 6 2
SLC7A11 WILD-TYPE 72 103 103
'SLC7A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1508.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SLC7A11 MUTATED 6 4 2
SLC7A11 WILD-TYPE 92 112 74
'SLC7A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1509.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SLC7A11 MUTATED 3 3 0 1
SLC7A11 WILD-TYPE 44 55 26 37
'SLC7A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1510.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SLC7A11 MUTATED 2 3 0 2
SLC7A11 WILD-TYPE 25 55 35 47
'SLC7A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1511.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SLC7A11 MUTATED 4 4 4
SLC7A11 WILD-TYPE 99 82 97
'SLC7A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1512.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SLC7A11 MUTATED 3 2 5 2
SLC7A11 WILD-TYPE 80 79 73 46
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1513.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SLC7A11 MUTATED 2 5 2 3 0
SLC7A11 WILD-TYPE 39 74 66 83 6
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1514.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SLC7A11 MUTATED 2 6 2 2
SLC7A11 WILD-TYPE 77 104 53 34
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1515.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SLC7A11 MUTATED 4 3 4
SLC7A11 WILD-TYPE 71 83 104
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1516.  Gene #153: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SLC7A11 MUTATED 4 5 2
SLC7A11 WILD-TYPE 129 103 26
'PLK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1517.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PLK1 MUTATED 1 2 1
PLK1 WILD-TYPE 75 107 104
'PLK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 1

Table S1518.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PLK1 MUTATED 0 4 0
PLK1 WILD-TYPE 98 112 76
'PLK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1519.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PLK1 MUTATED 1 2 1
PLK1 WILD-TYPE 102 84 100
'PLK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1520.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PLK1 MUTATED 1 1 2 0
PLK1 WILD-TYPE 82 80 76 48
'PLK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1521.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PLK1 MUTATED 0 3 0 1 0
PLK1 WILD-TYPE 41 76 68 85 6
'PLK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1522.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PLK1 MUTATED 2 0 2 0
PLK1 WILD-TYPE 77 110 53 36
'PLK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1523.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PLK1 MUTATED 2 2 0
PLK1 WILD-TYPE 73 84 108
'PLK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1524.  Gene #154: 'PLK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PLK1 MUTATED 2 2 0
PLK1 WILD-TYPE 131 106 28
'EFHB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1525.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EFHB MUTATED 6 7 5
EFHB WILD-TYPE 70 102 100
'EFHB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1526.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EFHB MUTATED 10 6 2
EFHB WILD-TYPE 88 110 74
'EFHB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1527.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
EFHB MUTATED 5 2 0 4
EFHB WILD-TYPE 42 56 26 34
'EFHB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1528.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EFHB MUTATED 3 4 1 3
EFHB WILD-TYPE 24 54 34 46
'EFHB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1529.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EFHB MUTATED 5 9 4
EFHB WILD-TYPE 98 77 97
'EFHB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1530.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EFHB MUTATED 5 3 5 5
EFHB WILD-TYPE 78 78 73 43
'EFHB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1531.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
EFHB MUTATED 5 5 4 3 0
EFHB WILD-TYPE 36 74 64 83 6
'EFHB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1532.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
EFHB MUTATED 4 7 2 4
EFHB WILD-TYPE 75 103 53 32
'EFHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1533.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
EFHB MUTATED 5 5 7
EFHB WILD-TYPE 70 81 101
'EFHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1534.  Gene #155: 'EFHB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
EFHB MUTATED 9 4 4
EFHB WILD-TYPE 124 104 24
'PHF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1535.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PHF3 MUTATED 4 4 3
PHF3 WILD-TYPE 72 105 102
'PHF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1536.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PHF3 MUTATED 3 3 5
PHF3 WILD-TYPE 95 113 71
'PHF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1537.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PHF3 MUTATED 1 4 1 0
PHF3 WILD-TYPE 46 54 25 38
'PHF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1538.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PHF3 MUTATED 0 3 0 3
PHF3 WILD-TYPE 27 55 35 46
'PHF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1539.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PHF3 MUTATED 3 3 5
PHF3 WILD-TYPE 100 83 96
'PHF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1540.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PHF3 MUTATED 4 2 4 1
PHF3 WILD-TYPE 79 79 74 47
'PHF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1541.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PHF3 MUTATED 0 5 1 4 0
PHF3 WILD-TYPE 41 74 67 82 6
'PHF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1542.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PHF3 MUTATED 4 4 1 1
PHF3 WILD-TYPE 75 106 54 35
'PHF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1543.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PHF3 MUTATED 3 3 4
PHF3 WILD-TYPE 72 83 104
'PHF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1544.  Gene #156: 'PHF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PHF3 MUTATED 5 5 0
PHF3 WILD-TYPE 128 103 28
'PPFIA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1545.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PPFIA1 MUTATED 4 5 7
PPFIA1 WILD-TYPE 72 104 98
'PPFIA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1546.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PPFIA1 MUTATED 8 6 2
PPFIA1 WILD-TYPE 90 110 74
'PPFIA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1547.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PPFIA1 MUTATED 1 2 0 3
PPFIA1 WILD-TYPE 46 56 26 35
'PPFIA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1548.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PPFIA1 MUTATED 0 2 2 2
PPFIA1 WILD-TYPE 27 56 33 47
'PPFIA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1549.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PPFIA1 MUTATED 6 5 5
PPFIA1 WILD-TYPE 97 81 96
'PPFIA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1550.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PPFIA1 MUTATED 5 3 4 4
PPFIA1 WILD-TYPE 78 78 74 44
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S1551.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PPFIA1 MUTATED 2 2 5 7 0
PPFIA1 WILD-TYPE 39 77 63 79 6
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S1552.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PPFIA1 MUTATED 5 7 3 1
PPFIA1 WILD-TYPE 74 103 52 35
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1553.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PPFIA1 MUTATED 4 2 10
PPFIA1 WILD-TYPE 71 84 98
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1554.  Gene #157: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PPFIA1 MUTATED 11 4 1
PPFIA1 WILD-TYPE 122 104 27
'SH3RF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S1555.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SH3RF2 MUTATED 6 19 9
SH3RF2 WILD-TYPE 70 90 96
'SH3RF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.94

Table S1556.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SH3RF2 MUTATED 15 16 3
SH3RF2 WILD-TYPE 83 100 73

Figure S88.  Get High-res Image Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SH3RF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1557.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SH3RF2 MUTATED 8 6 3 5
SH3RF2 WILD-TYPE 39 52 23 33
'SH3RF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1558.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SH3RF2 MUTATED 5 7 4 6
SH3RF2 WILD-TYPE 22 51 31 43
'SH3RF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 1

Table S1559.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SH3RF2 MUTATED 11 16 7
SH3RF2 WILD-TYPE 92 70 94

Figure S89.  Get High-res Image Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SH3RF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1560.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SH3RF2 MUTATED 11 12 6 5
SH3RF2 WILD-TYPE 72 69 72 43
'SH3RF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1561.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SH3RF2 MUTATED 2 9 8 13 0
SH3RF2 WILD-TYPE 39 70 60 73 6
'SH3RF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1562.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SH3RF2 MUTATED 9 14 7 2
SH3RF2 WILD-TYPE 70 96 48 34
'SH3RF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1563.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SH3RF2 MUTATED 12 8 11
SH3RF2 WILD-TYPE 63 78 97
'SH3RF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1564.  Gene #158: 'SH3RF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SH3RF2 MUTATED 18 12 1
SH3RF2 WILD-TYPE 115 96 27
'UGT2B17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.8

Table S1565.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UGT2B17 MUTATED 11 8 3
UGT2B17 WILD-TYPE 65 101 102

Figure S90.  Get High-res Image Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UGT2B17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1566.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UGT2B17 MUTATED 7 9 6
UGT2B17 WILD-TYPE 91 107 70
'UGT2B17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1567.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
UGT2B17 MUTATED 4 4 2 3
UGT2B17 WILD-TYPE 43 54 24 35
'UGT2B17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1568.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
UGT2B17 MUTATED 3 7 1 2
UGT2B17 WILD-TYPE 24 51 34 47
'UGT2B17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1569.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UGT2B17 MUTATED 10 7 5
UGT2B17 WILD-TYPE 93 79 96
'UGT2B17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1570.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UGT2B17 MUTATED 7 7 5 3
UGT2B17 WILD-TYPE 76 74 73 45
'UGT2B17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1571.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UGT2B17 MUTATED 3 4 4 10 0
UGT2B17 WILD-TYPE 38 75 64 76 6
'UGT2B17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1572.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UGT2B17 MUTATED 4 10 5 2
UGT2B17 WILD-TYPE 75 100 50 34
'UGT2B17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1573.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UGT2B17 MUTATED 5 5 10
UGT2B17 WILD-TYPE 70 81 98
'UGT2B17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1574.  Gene #159: 'UGT2B17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UGT2B17 MUTATED 13 6 1
UGT2B17 WILD-TYPE 120 102 27
'PTK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1575.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTK7 MUTATED 6 3 7
PTK7 WILD-TYPE 70 106 98
'PTK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1576.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTK7 MUTATED 8 5 3
PTK7 WILD-TYPE 90 111 73
'PTK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1577.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PTK7 MUTATED 4 1 2 1
PTK7 WILD-TYPE 43 57 24 37
'PTK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1578.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTK7 MUTATED 2 1 3 2
PTK7 WILD-TYPE 25 57 32 47
'PTK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1579.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTK7 MUTATED 8 3 5
PTK7 WILD-TYPE 95 83 96
'PTK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1580.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTK7 MUTATED 6 4 3 3
PTK7 WILD-TYPE 77 77 75 45
'PTK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1581.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PTK7 MUTATED 0 4 3 7 1
PTK7 WILD-TYPE 41 75 65 79 5
'PTK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1582.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PTK7 MUTATED 3 9 3 0
PTK7 WILD-TYPE 76 101 52 36
'PTK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1583.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PTK7 MUTATED 2 3 10
PTK7 WILD-TYPE 73 83 98
'PTK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1584.  Gene #160: 'PTK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PTK7 MUTATED 8 7 0
PTK7 WILD-TYPE 125 101 28
'GPX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1585.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GPX5 MUTATED 6 6 6
GPX5 WILD-TYPE 70 103 99
'GPX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.94

Table S1586.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GPX5 MUTATED 11 3 4
GPX5 WILD-TYPE 87 113 72

Figure S91.  Get High-res Image Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1587.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GPX5 MUTATED 2 1 1 4
GPX5 WILD-TYPE 45 57 25 34
'GPX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1588.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GPX5 MUTATED 1 4 1 2
GPX5 WILD-TYPE 26 54 34 47
'GPX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1589.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GPX5 MUTATED 7 6 5
GPX5 WILD-TYPE 96 80 96
'GPX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.94

Table S1590.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GPX5 MUTATED 11 3 2 2
GPX5 WILD-TYPE 72 78 76 46

Figure S92.  Get High-res Image Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1591.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GPX5 MUTATED 0 7 3 6 0
GPX5 WILD-TYPE 41 72 65 80 6
'GPX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1592.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GPX5 MUTATED 5 10 1 0
GPX5 WILD-TYPE 74 100 54 36
'GPX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S1593.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GPX5 MUTATED 5 5 6
GPX5 WILD-TYPE 70 81 102
'GPX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1594.  Gene #161: 'GPX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GPX5 MUTATED 9 7 0
GPX5 WILD-TYPE 124 101 28
'KLK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1595.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KLK8 MUTATED 3 7 4
KLK8 WILD-TYPE 73 102 101
'KLK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1596.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KLK8 MUTATED 3 9 2
KLK8 WILD-TYPE 95 107 74
'KLK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1597.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KLK8 MUTATED 1 1 3 1
KLK8 WILD-TYPE 46 57 23 37
'KLK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1598.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KLK8 MUTATED 1 1 3 1
KLK8 WILD-TYPE 26 57 32 48
'KLK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1599.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KLK8 MUTATED 6 6 2
KLK8 WILD-TYPE 97 80 99
'KLK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1600.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KLK8 MUTATED 4 4 2 4
KLK8 WILD-TYPE 79 77 76 44
'KLK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1601.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KLK8 MUTATED 2 5 2 5 0
KLK8 WILD-TYPE 39 74 66 81 6
'KLK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S1602.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KLK8 MUTATED 4 6 2 2
KLK8 WILD-TYPE 75 104 53 34
'KLK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1603.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KLK8 MUTATED 5 2 7
KLK8 WILD-TYPE 70 84 101
'KLK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1604.  Gene #162: 'KLK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KLK8 MUTATED 9 4 1
KLK8 WILD-TYPE 124 104 27
'NUP205 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1605.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NUP205 MUTATED 5 4 5
NUP205 WILD-TYPE 71 105 100
'NUP205 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1606.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NUP205 MUTATED 6 6 2
NUP205 WILD-TYPE 92 110 74
'NUP205 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1607.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NUP205 MUTATED 2 3 0 4
NUP205 WILD-TYPE 45 55 26 34
'NUP205 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1608.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NUP205 MUTATED 1 4 3 1
NUP205 WILD-TYPE 26 54 32 48
'NUP205 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1609.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NUP205 MUTATED 3 7 4
NUP205 WILD-TYPE 100 79 97
'NUP205 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1610.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NUP205 MUTATED 3 4 3 4
NUP205 WILD-TYPE 80 77 75 44
'NUP205 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S1611.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NUP205 MUTATED 2 3 3 5 0
NUP205 WILD-TYPE 39 76 65 81 6
'NUP205 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S1612.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NUP205 MUTATED 4 5 2 2
NUP205 WILD-TYPE 75 105 53 34
'NUP205 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1613.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NUP205 MUTATED 2 5 6
NUP205 WILD-TYPE 73 81 102
'NUP205 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1614.  Gene #163: 'NUP205 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NUP205 MUTATED 7 5 1
NUP205 WILD-TYPE 126 103 27
'KLRC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1615.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KLRC3 MUTATED 2 3 3
KLRC3 WILD-TYPE 74 106 102
'KLRC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1616.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KLRC3 MUTATED 4 3 1
KLRC3 WILD-TYPE 94 113 75
'KLRC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1617.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KLRC3 MUTATED 1 1 0 2
KLRC3 WILD-TYPE 46 57 26 36
'KLRC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1618.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KLRC3 MUTATED 0 2 2 0
KLRC3 WILD-TYPE 27 56 33 49
'KLRC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S1619.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KLRC3 MUTATED 2 4 2
KLRC3 WILD-TYPE 101 82 99
'KLRC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1620.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KLRC3 MUTATED 2 2 3 1
KLRC3 WILD-TYPE 81 79 75 47
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S1621.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KLRC3 MUTATED 0 1 4 1 1
KLRC3 WILD-TYPE 41 78 64 85 5
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1622.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KLRC3 MUTATED 2 3 2 0
KLRC3 WILD-TYPE 77 107 53 36
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1623.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KLRC3 MUTATED 4 1 2
KLRC3 WILD-TYPE 71 85 106
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1624.  Gene #164: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KLRC3 MUTATED 4 3 0
KLRC3 WILD-TYPE 129 105 28
'KCTD19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1625.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KCTD19 MUTATED 3 3 3
KCTD19 WILD-TYPE 73 106 102
'KCTD19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1626.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KCTD19 MUTATED 3 5 1
KCTD19 WILD-TYPE 95 111 75
'KCTD19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 1

Table S1627.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
KCTD19 MUTATED 2 0 0 3
KCTD19 WILD-TYPE 45 58 26 35
'KCTD19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1628.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KCTD19 MUTATED 1 2 1 1
KCTD19 WILD-TYPE 26 56 34 48
'KCTD19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1629.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KCTD19 MUTATED 4 4 1
KCTD19 WILD-TYPE 99 82 100
'KCTD19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1630.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KCTD19 MUTATED 3 2 1 3
KCTD19 WILD-TYPE 80 79 77 45
'KCTD19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1631.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
KCTD19 MUTATED 2 1 1 3 0
KCTD19 WILD-TYPE 39 78 67 83 6
'KCTD19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1632.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
KCTD19 MUTATED 2 3 0 2
KCTD19 WILD-TYPE 77 107 55 34
'KCTD19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1633.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
KCTD19 MUTATED 1 3 3
KCTD19 WILD-TYPE 74 83 105
'KCTD19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1634.  Gene #165: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
KCTD19 MUTATED 4 1 2
KCTD19 WILD-TYPE 129 107 26
'SUN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1635.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SUN3 MUTATED 2 2 2
SUN3 WILD-TYPE 74 107 103
'SUN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1636.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SUN3 MUTATED 3 2 1
SUN3 WILD-TYPE 95 114 75
'SUN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1637.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SUN3 MUTATED 0 3 0 1
SUN3 WILD-TYPE 47 55 26 37
'SUN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1638.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SUN3 MUTATED 0 2 0 2
SUN3 WILD-TYPE 27 56 35 47
'SUN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1639.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SUN3 MUTATED 2 2 2
SUN3 WILD-TYPE 101 84 99
'SUN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1640.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SUN3 MUTATED 3 2 0 1
SUN3 WILD-TYPE 80 79 78 47
'SUN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1641.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SUN3 MUTATED 0 2 1 3 0
SUN3 WILD-TYPE 41 77 67 83 6
'SUN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1642.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SUN3 MUTATED 2 3 1 0
SUN3 WILD-TYPE 77 107 54 36
'SUN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1643.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SUN3 MUTATED 2 0 4
SUN3 WILD-TYPE 73 86 104
'SUN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1644.  Gene #166: 'SUN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SUN3 MUTATED 4 2 0
SUN3 WILD-TYPE 129 106 28
'TBC1D22B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1645.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TBC1D22B MUTATED 1 2 3
TBC1D22B WILD-TYPE 75 107 102
'TBC1D22B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1646.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TBC1D22B MUTATED 3 3 0
TBC1D22B WILD-TYPE 95 113 76
'TBC1D22B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1647.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TBC1D22B MUTATED 1 1 0 2
TBC1D22B WILD-TYPE 46 57 26 36
'TBC1D22B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1648.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TBC1D22B MUTATED 1 1 2 0
TBC1D22B WILD-TYPE 26 57 33 49
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1649.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TBC1D22B MUTATED 2 2 2
TBC1D22B WILD-TYPE 101 84 99
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1650.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TBC1D22B MUTATED 1 1 2 2
TBC1D22B WILD-TYPE 82 80 76 46
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1651.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TBC1D22B MUTATED 2 1 2 1 0
TBC1D22B WILD-TYPE 39 78 66 85 6
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1652.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TBC1D22B MUTATED 2 2 1 1
TBC1D22B WILD-TYPE 77 108 54 35
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1653.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TBC1D22B MUTATED 1 2 3
TBC1D22B WILD-TYPE 74 84 105
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1654.  Gene #167: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TBC1D22B MUTATED 4 1 1
TBC1D22B WILD-TYPE 129 107 27
'RASA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1655.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RASA2 MUTATED 5 7 2
RASA2 WILD-TYPE 71 102 103
'RASA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1656.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RASA2 MUTATED 5 7 2
RASA2 WILD-TYPE 93 109 74
'RASA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1657.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RASA2 MUTATED 3 2 2 3
RASA2 WILD-TYPE 44 56 24 35
'RASA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1658.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RASA2 MUTATED 1 4 1 4
RASA2 WILD-TYPE 26 54 34 45
'RASA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1659.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RASA2 MUTATED 6 5 3
RASA2 WILD-TYPE 97 81 98
'RASA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1660.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RASA2 MUTATED 5 3 3 3
RASA2 WILD-TYPE 78 78 75 45
'RASA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1661.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RASA2 MUTATED 1 3 4 6 0
RASA2 WILD-TYPE 40 76 64 80 6
'RASA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1662.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RASA2 MUTATED 6 6 1 1
RASA2 WILD-TYPE 73 104 54 35
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S1663.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RASA2 MUTATED 6 2 6
RASA2 WILD-TYPE 69 84 102
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1664.  Gene #168: 'RASA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RASA2 MUTATED 9 4 1
RASA2 WILD-TYPE 124 104 27
'EPS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1665.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EPS8 MUTATED 4 2 1
EPS8 WILD-TYPE 72 107 104
'EPS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1666.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EPS8 MUTATED 3 2 2
EPS8 WILD-TYPE 95 114 74
'EPS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1667.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
EPS8 MUTATED 1 2 1 1
EPS8 WILD-TYPE 46 56 25 37
'EPS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1668.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EPS8 MUTATED 0 3 1 1
EPS8 WILD-TYPE 27 55 34 48
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1669.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EPS8 MUTATED 2 4 1
EPS8 WILD-TYPE 101 82 100
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1670.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EPS8 MUTATED 1 3 1 2
EPS8 WILD-TYPE 82 78 77 46
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1671.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
EPS8 MUTATED 1 2 1 3 0
EPS8 WILD-TYPE 40 77 67 83 6
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1672.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
EPS8 MUTATED 1 4 1 1
EPS8 WILD-TYPE 78 106 54 35
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1673.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
EPS8 MUTATED 2 1 4
EPS8 WILD-TYPE 73 85 104
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1674.  Gene #169: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
EPS8 MUTATED 4 2 1
EPS8 WILD-TYPE 129 106 27
'ANXA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.33

Table S1675.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ANXA10 MUTATED 2 10 0
ANXA10 WILD-TYPE 74 99 105

Figure S93.  Get High-res Image Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANXA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.89

Table S1676.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ANXA10 MUTATED 3 9 0
ANXA10 WILD-TYPE 95 107 76

Figure S94.  Get High-res Image Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANXA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1677.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ANXA10 MUTATED 3 3 0 2
ANXA10 WILD-TYPE 44 55 26 36
'ANXA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1678.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ANXA10 MUTATED 1 4 2 1
ANXA10 WILD-TYPE 26 54 33 48
'ANXA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1679.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ANXA10 MUTATED 3 5 4
ANXA10 WILD-TYPE 100 81 97
'ANXA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1680.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ANXA10 MUTATED 3 3 3 3
ANXA10 WILD-TYPE 80 78 75 45
'ANXA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1681.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ANXA10 MUTATED 1 4 4 3 0
ANXA10 WILD-TYPE 40 75 64 83 6
'ANXA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1682.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ANXA10 MUTATED 5 2 4 1
ANXA10 WILD-TYPE 74 108 51 35
'ANXA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1683.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ANXA10 MUTATED 5 3 3
ANXA10 WILD-TYPE 70 83 105
'ANXA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1684.  Gene #170: 'ANXA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ANXA10 MUTATED 6 5 0
ANXA10 WILD-TYPE 127 103 28
'IGFL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1685.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IGFL2 MUTATED 1 4 1
IGFL2 WILD-TYPE 75 105 104
'IGFL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1686.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IGFL2 MUTATED 3 3 0
IGFL2 WILD-TYPE 95 113 76
'IGFL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1687.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
IGFL2 MUTATED 2 1 0 0
IGFL2 WILD-TYPE 45 57 26 38
'IGFL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1688.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IGFL2 MUTATED 2 1 0 0
IGFL2 WILD-TYPE 25 57 35 49
'IGFL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1689.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IGFL2 MUTATED 2 1 3
IGFL2 WILD-TYPE 101 85 98
'IGFL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1690.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IGFL2 MUTATED 4 1 1 0
IGFL2 WILD-TYPE 79 80 77 48
'IGFL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1691.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IGFL2 MUTATED 0 4 2 0 0
IGFL2 WILD-TYPE 41 75 66 86 6
'IGFL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1692.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IGFL2 MUTATED 2 1 3 0
IGFL2 WILD-TYPE 77 109 52 36
'IGFL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1693.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IGFL2 MUTATED 1 3 2
IGFL2 WILD-TYPE 74 83 106
'IGFL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1694.  Gene #171: 'IGFL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IGFL2 MUTATED 1 5 0
IGFL2 WILD-TYPE 132 103 28
'MED17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 1

Table S1695.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MED17 MUTATED 0 5 1
MED17 WILD-TYPE 76 104 104
'MED17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1696.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MED17 MUTATED 2 2 2
MED17 WILD-TYPE 96 114 74
'MED17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1697.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MED17 MUTATED 2 1 1 0
MED17 WILD-TYPE 45 57 25 38
'MED17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1698.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MED17 MUTATED 1 1 1 1
MED17 WILD-TYPE 26 57 34 48
'MED17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1699.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MED17 MUTATED 1 1 4
MED17 WILD-TYPE 102 85 97
'MED17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S1700.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MED17 MUTATED 1 1 3 1
MED17 WILD-TYPE 82 80 75 47
'MED17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S1701.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MED17 MUTATED 0 5 1 0 0
MED17 WILD-TYPE 41 74 67 86 6
'MED17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1702.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MED17 MUTATED 1 2 3 0
MED17 WILD-TYPE 78 108 52 36
'MED17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1703.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MED17 MUTATED 2 3 1
MED17 WILD-TYPE 73 83 107
'MED17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1704.  Gene #172: 'MED17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MED17 MUTATED 1 5 0
MED17 WILD-TYPE 132 103 28
'CD74 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1705.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD74 MUTATED 2 4 1
CD74 WILD-TYPE 74 105 104
'CD74 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S1706.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD74 MUTATED 3 2 2
CD74 WILD-TYPE 95 114 74
'CD74 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1707.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CD74 MUTATED 0 2 0 1
CD74 WILD-TYPE 47 56 26 37
'CD74 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S1708.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD74 MUTATED 0 0 1 2
CD74 WILD-TYPE 27 58 34 47
'CD74 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1709.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD74 MUTATED 3 2 2
CD74 WILD-TYPE 100 84 99
'CD74 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1710.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD74 MUTATED 3 1 2 1
CD74 WILD-TYPE 80 80 76 47
'CD74 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1711.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CD74 MUTATED 0 3 4 0 0
CD74 WILD-TYPE 41 76 64 86 6
'CD74 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S1712.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CD74 MUTATED 3 3 1 0
CD74 WILD-TYPE 76 107 54 36
'CD74 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1713.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CD74 MUTATED 2 1 4
CD74 WILD-TYPE 73 85 104
'CD74 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1714.  Gene #173: 'CD74 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CD74 MUTATED 4 3 0
CD74 WILD-TYPE 129 105 28
'BCL2L11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1715.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BCL2L11 MUTATED 2 2 1
BCL2L11 WILD-TYPE 74 107 104
'BCL2L11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1716.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BCL2L11 MUTATED 1 3 1
BCL2L11 WILD-TYPE 97 113 75
'BCL2L11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1717.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
BCL2L11 MUTATED 1 2 1 0
BCL2L11 WILD-TYPE 46 56 25 38
'BCL2L11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1718.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BCL2L11 MUTATED 1 2 0 1
BCL2L11 WILD-TYPE 26 56 35 48
'BCL2L11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S1719.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BCL2L11 MUTATED 2 2 1
BCL2L11 WILD-TYPE 101 84 100
'BCL2L11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S1720.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BCL2L11 MUTATED 2 1 0 2
BCL2L11 WILD-TYPE 81 80 78 46
'BCL2L11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1721.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
BCL2L11 MUTATED 2 1 1 1 0
BCL2L11 WILD-TYPE 39 78 67 85 6
'BCL2L11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1722.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
BCL2L11 MUTATED 2 2 0 1
BCL2L11 WILD-TYPE 77 108 55 35
'BCL2L11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1723.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
BCL2L11 MUTATED 2 0 3
BCL2L11 WILD-TYPE 73 86 105
'BCL2L11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1724.  Gene #174: 'BCL2L11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
BCL2L11 MUTATED 3 1 1
BCL2L11 WILD-TYPE 130 107 27
'ANO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1725.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ANO4 MUTATED 14 21 13
ANO4 WILD-TYPE 62 88 92
'ANO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1726.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ANO4 MUTATED 19 19 10
ANO4 WILD-TYPE 79 97 66
'ANO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1727.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ANO4 MUTATED 11 8 3 10
ANO4 WILD-TYPE 36 50 23 28
'ANO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1728.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ANO4 MUTATED 4 11 8 9
ANO4 WILD-TYPE 23 47 27 40
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S1729.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ANO4 MUTATED 16 18 14
ANO4 WILD-TYPE 87 68 87
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1730.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ANO4 MUTATED 13 14 15 6
ANO4 WILD-TYPE 70 67 63 42
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.995 (Fisher's exact test), Q value = 1

Table S1731.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ANO4 MUTATED 6 13 12 15 1
ANO4 WILD-TYPE 35 66 56 71 5
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1732.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ANO4 MUTATED 15 15 11 6
ANO4 WILD-TYPE 64 95 44 30
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1733.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ANO4 MUTATED 13 12 21
ANO4 WILD-TYPE 62 74 87
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1734.  Gene #175: 'ANO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ANO4 MUTATED 22 20 4
ANO4 WILD-TYPE 111 88 24
'CAGE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1735.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CAGE1 MUTATED 4 3 4
CAGE1 WILD-TYPE 72 106 101
'CAGE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1736.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CAGE1 MUTATED 4 5 2
CAGE1 WILD-TYPE 94 111 74
'CAGE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1737.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CAGE1 MUTATED 3 2 2 2
CAGE1 WILD-TYPE 44 56 24 36
'CAGE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S1738.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CAGE1 MUTATED 2 0 3 4
CAGE1 WILD-TYPE 25 58 32 45
'CAGE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1739.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CAGE1 MUTATED 4 4 3
CAGE1 WILD-TYPE 99 82 98
'CAGE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1740.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CAGE1 MUTATED 4 3 3 1
CAGE1 WILD-TYPE 79 78 75 47
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1741.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CAGE1 MUTATED 0 4 5 2 0
CAGE1 WILD-TYPE 41 75 63 84 6
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1742.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CAGE1 MUTATED 4 5 2 0
CAGE1 WILD-TYPE 75 105 53 36
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1743.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CAGE1 MUTATED 3 2 6
CAGE1 WILD-TYPE 72 84 102
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1744.  Gene #176: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CAGE1 MUTATED 6 5 0
CAGE1 WILD-TYPE 127 103 28
'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1745.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EPHA3 MUTATED 7 12 12
EPHA3 WILD-TYPE 69 97 93
'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S1746.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EPHA3 MUTATED 10 14 7
EPHA3 WILD-TYPE 88 102 69
'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1747.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
EPHA3 MUTATED 5 5 2 4
EPHA3 WILD-TYPE 42 53 24 34
'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1748.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EPHA3 MUTATED 3 5 2 6
EPHA3 WILD-TYPE 24 53 33 43
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1749.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EPHA3 MUTATED 11 8 12
EPHA3 WILD-TYPE 92 78 89
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S1750.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EPHA3 MUTATED 9 8 9 5
EPHA3 WILD-TYPE 74 73 69 43
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1751.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
EPHA3 MUTATED 2 7 13 7 1
EPHA3 WILD-TYPE 39 72 55 79 5
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.93

Table S1752.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
EPHA3 MUTATED 8 9 12 1
EPHA3 WILD-TYPE 71 101 43 35

Figure S95.  Get High-res Image Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1753.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
EPHA3 MUTATED 11 6 13
EPHA3 WILD-TYPE 64 80 95
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1754.  Gene #177: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
EPHA3 MUTATED 19 10 1
EPHA3 WILD-TYPE 114 98 27
'LTBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1755.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
LTBP1 MUTATED 11 14 7
LTBP1 WILD-TYPE 65 95 98
'LTBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1756.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
LTBP1 MUTATED 14 12 6
LTBP1 WILD-TYPE 84 104 70
'LTBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1757.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
LTBP1 MUTATED 7 9 1 7
LTBP1 WILD-TYPE 40 49 25 31
'LTBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S1758.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
LTBP1 MUTATED 4 9 5 6
LTBP1 WILD-TYPE 23 49 30 43
'LTBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1759.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
LTBP1 MUTATED 10 12 10
LTBP1 WILD-TYPE 93 74 91
'LTBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S1760.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
LTBP1 MUTATED 9 10 8 5
LTBP1 WILD-TYPE 74 71 70 43
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1761.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
LTBP1 MUTATED 2 10 7 11 0
LTBP1 WILD-TYPE 39 69 61 75 6
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1762.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
LTBP1 MUTATED 8 14 6 2
LTBP1 WILD-TYPE 71 96 49 34
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1763.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
LTBP1 MUTATED 9 7 14
LTBP1 WILD-TYPE 66 79 94
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1764.  Gene #178: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
LTBP1 MUTATED 16 12 2
LTBP1 WILD-TYPE 117 96 26
'ANO7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1765.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ANO7 MUTATED 5 2 4
ANO7 WILD-TYPE 71 107 101
'ANO7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1766.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ANO7 MUTATED 4 4 3
ANO7 WILD-TYPE 94 112 73
'ANO7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1767.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ANO7 MUTATED 2 2 0 2
ANO7 WILD-TYPE 45 56 26 36
'ANO7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1768.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ANO7 MUTATED 2 2 1 1
ANO7 WILD-TYPE 25 56 34 48
'ANO7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1769.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ANO7 MUTATED 5 1 5
ANO7 WILD-TYPE 98 85 96
'ANO7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1770.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ANO7 MUTATED 5 1 4 1
ANO7 WILD-TYPE 78 80 74 47
'ANO7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1771.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ANO7 MUTATED 2 2 5 2 0
ANO7 WILD-TYPE 39 77 63 84 6
'ANO7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1772.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ANO7 MUTATED 3 4 2 2
ANO7 WILD-TYPE 76 106 53 34
'ANO7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1773.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ANO7 MUTATED 2 3 5
ANO7 WILD-TYPE 73 83 103
'ANO7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1774.  Gene #179: 'ANO7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ANO7 MUTATED 5 3 2
ANO7 WILD-TYPE 128 105 26
'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1775.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
LUZP1 MUTATED 3 1 2
LUZP1 WILD-TYPE 73 108 103
'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1776.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
LUZP1 MUTATED 4 1 1
LUZP1 WILD-TYPE 94 115 75
'LUZP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S1777.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
LUZP1 MUTATED 0 2 1 1
LUZP1 WILD-TYPE 47 56 25 37
'LUZP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1778.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
LUZP1 MUTATED 0 3 0 1
LUZP1 WILD-TYPE 27 55 35 48
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1779.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
LUZP1 MUTATED 4 1 1
LUZP1 WILD-TYPE 99 85 100
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1780.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
LUZP1 MUTATED 3 1 1 1
LUZP1 WILD-TYPE 80 80 77 47
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1781.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
LUZP1 MUTATED 1 0 3 2 0
LUZP1 WILD-TYPE 40 79 65 84 6
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1782.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
LUZP1 MUTATED 3 1 1 1
LUZP1 WILD-TYPE 76 109 54 35
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1783.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
LUZP1 MUTATED 3 0 3
LUZP1 WILD-TYPE 72 86 105
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1784.  Gene #180: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
LUZP1 MUTATED 4 1 1
LUZP1 WILD-TYPE 129 107 27
'HTR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1785.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HTR7 MUTATED 3 4 4
HTR7 WILD-TYPE 73 105 101
'HTR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1786.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HTR7 MUTATED 6 3 2
HTR7 WILD-TYPE 92 113 74
'HTR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1787.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
HTR7 MUTATED 3 1 0 2
HTR7 WILD-TYPE 44 57 26 36
'HTR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1788.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HTR7 MUTATED 1 4 0 1
HTR7 WILD-TYPE 26 54 35 48
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 1

Table S1789.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HTR7 MUTATED 1 3 7
HTR7 WILD-TYPE 102 83 94
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1790.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HTR7 MUTATED 3 2 5 1
HTR7 WILD-TYPE 80 79 73 47
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1791.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
HTR7 MUTATED 0 2 6 2 0
HTR7 WILD-TYPE 41 77 62 84 6
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1792.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
HTR7 MUTATED 2 3 5 0
HTR7 WILD-TYPE 77 107 50 36
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1793.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
HTR7 MUTATED 4 2 4
HTR7 WILD-TYPE 71 84 104
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1794.  Gene #181: 'HTR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
HTR7 MUTATED 4 6 0
HTR7 WILD-TYPE 129 102 28
'ADAM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1795.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ADAM33 MUTATED 5 7 4
ADAM33 WILD-TYPE 71 102 101
'ADAM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1796.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ADAM33 MUTATED 3 10 3
ADAM33 WILD-TYPE 95 106 73
'ADAM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 1

Table S1797.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ADAM33 MUTATED 6 1 3 4
ADAM33 WILD-TYPE 41 57 23 34
'ADAM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S1798.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ADAM33 MUTATED 2 4 3 5
ADAM33 WILD-TYPE 25 54 32 44
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1799.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ADAM33 MUTATED 5 6 5
ADAM33 WILD-TYPE 98 80 96
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1800.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ADAM33 MUTATED 4 6 4 2
ADAM33 WILD-TYPE 79 75 74 46
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1801.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ADAM33 MUTATED 2 5 3 6 0
ADAM33 WILD-TYPE 39 74 65 80 6
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1802.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ADAM33 MUTATED 6 5 3 2
ADAM33 WILD-TYPE 73 105 52 34
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1803.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ADAM33 MUTATED 4 5 7
ADAM33 WILD-TYPE 71 81 101
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1804.  Gene #182: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ADAM33 MUTATED 7 8 1
ADAM33 WILD-TYPE 126 100 27
'MYL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1805.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYL2 MUTATED 1 6 2
MYL2 WILD-TYPE 75 103 103
'MYL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1806.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYL2 MUTATED 5 2 2
MYL2 WILD-TYPE 93 114 74
'MYL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1807.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MYL2 MUTATED 1 3 0 1
MYL2 WILD-TYPE 46 55 26 37
'MYL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1808.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYL2 MUTATED 1 2 2 0
MYL2 WILD-TYPE 26 56 33 49
'MYL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 1

Table S1809.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYL2 MUTATED 3 0 6
MYL2 WILD-TYPE 100 86 95
'MYL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1810.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYL2 MUTATED 2 1 5 1
MYL2 WILD-TYPE 81 80 73 47
'MYL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1811.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MYL2 MUTATED 0 2 3 4 0
MYL2 WILD-TYPE 41 77 65 82 6
'MYL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1812.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MYL2 MUTATED 2 4 3 0
MYL2 WILD-TYPE 77 106 52 36
'MYL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1813.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MYL2 MUTATED 1 1 6
MYL2 WILD-TYPE 74 85 102
'MYL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1814.  Gene #183: 'MYL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MYL2 MUTATED 5 3 0
MYL2 WILD-TYPE 128 105 28
'RNF133 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1815.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RNF133 MUTATED 1 5 3
RNF133 WILD-TYPE 75 104 102
'RNF133 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1816.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RNF133 MUTATED 2 6 1
RNF133 WILD-TYPE 96 110 75
'RNF133 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1817.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RNF133 MUTATED 2 1 0 3
RNF133 WILD-TYPE 45 57 26 35
'RNF133 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1818.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RNF133 MUTATED 2 2 0 2
RNF133 WILD-TYPE 25 56 35 47
'RNF133 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1819.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RNF133 MUTATED 4 3 2
RNF133 WILD-TYPE 99 83 99
'RNF133 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1820.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RNF133 MUTATED 2 3 2 2
RNF133 WILD-TYPE 81 78 76 46
'RNF133 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 1

Table S1821.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RNF133 MUTATED 4 3 0 2 0
RNF133 WILD-TYPE 37 76 68 84 6
'RNF133 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1822.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RNF133 MUTATED 1 4 1 3
RNF133 WILD-TYPE 78 106 54 33
'RNF133 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1823.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RNF133 MUTATED 2 4 3
RNF133 WILD-TYPE 73 82 105
'RNF133 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1824.  Gene #184: 'RNF133 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RNF133 MUTATED 3 4 2
RNF133 WILD-TYPE 130 104 26
'ART3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1825.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ART3 MUTATED 3 6 3
ART3 WILD-TYPE 73 103 102
'ART3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1826.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ART3 MUTATED 5 6 1
ART3 WILD-TYPE 93 110 75
'ART3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S1827.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ART3 MUTATED 2 3 2 1
ART3 WILD-TYPE 45 55 24 37
'ART3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1828.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ART3 MUTATED 0 2 1 5
ART3 WILD-TYPE 27 56 34 44
'ART3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1829.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ART3 MUTATED 3 5 4
ART3 WILD-TYPE 100 81 97
'ART3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1830.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ART3 MUTATED 3 3 3 3
ART3 WILD-TYPE 80 78 75 45
'ART3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S1831.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ART3 MUTATED 2 3 2 3 1
ART3 WILD-TYPE 39 76 66 83 5
'ART3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1832.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ART3 MUTATED 2 6 2 1
ART3 WILD-TYPE 77 104 53 35
'ART3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1833.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ART3 MUTATED 5 2 4
ART3 WILD-TYPE 70 84 104
'ART3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1834.  Gene #185: 'ART3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ART3 MUTATED 5 5 1
ART3 WILD-TYPE 128 103 27
'SPRYD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1835.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SPRYD3 MUTATED 1 3 4
SPRYD3 WILD-TYPE 75 106 101
'SPRYD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1836.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SPRYD3 MUTATED 3 3 2
SPRYD3 WILD-TYPE 95 113 74
'SPRYD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1837.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SPRYD3 MUTATED 0 2 0 1
SPRYD3 WILD-TYPE 47 56 26 37
'SPRYD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1838.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SPRYD3 MUTATED 0 1 0 2
SPRYD3 WILD-TYPE 27 57 35 47
'SPRYD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1839.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SPRYD3 MUTATED 4 2 2
SPRYD3 WILD-TYPE 99 84 99
'SPRYD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1840.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SPRYD3 MUTATED 2 3 1 2
SPRYD3 WILD-TYPE 81 78 77 46
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1841.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SPRYD3 MUTATED 3 1 2 2 0
SPRYD3 WILD-TYPE 38 78 66 84 6
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S1842.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SPRYD3 MUTATED 2 4 1 1
SPRYD3 WILD-TYPE 77 106 54 35
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1843.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SPRYD3 MUTATED 2 1 4
SPRYD3 WILD-TYPE 73 85 104
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1844.  Gene #186: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SPRYD3 MUTATED 5 1 1
SPRYD3 WILD-TYPE 128 107 27
'HFE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1845.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HFE2 MUTATED 1 7 4
HFE2 WILD-TYPE 75 102 101
'HFE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1846.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HFE2 MUTATED 4 7 1
HFE2 WILD-TYPE 94 109 75
'HFE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1847.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
HFE2 MUTATED 3 3 0 1
HFE2 WILD-TYPE 44 55 26 37
'HFE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1848.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HFE2 MUTATED 2 2 1 2
HFE2 WILD-TYPE 25 56 34 47
'HFE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1849.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HFE2 MUTATED 7 3 2
HFE2 WILD-TYPE 96 83 99
'HFE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1850.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HFE2 MUTATED 6 2 2 2
HFE2 WILD-TYPE 77 79 76 46
'HFE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1851.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
HFE2 MUTATED 0 3 5 4 0
HFE2 WILD-TYPE 41 76 63 82 6
'HFE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1852.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
HFE2 MUTATED 5 4 3 0
HFE2 WILD-TYPE 74 106 52 36
'HFE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1853.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
HFE2 MUTATED 5 2 5
HFE2 WILD-TYPE 70 84 103
'HFE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1854.  Gene #187: 'HFE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
HFE2 MUTATED 8 4 0
HFE2 WILD-TYPE 125 104 28
'ANKRD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 1

Table S1855.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ANKRD11 MUTATED 9 14 5
ANKRD11 WILD-TYPE 67 95 100
'ANKRD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1856.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ANKRD11 MUTATED 10 11 7
ANKRD11 WILD-TYPE 88 105 69
'ANKRD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1857.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ANKRD11 MUTATED 5 9 4 1
ANKRD11 WILD-TYPE 42 49 22 37
'ANKRD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1858.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ANKRD11 MUTATED 4 9 1 5
ANKRD11 WILD-TYPE 23 49 34 44
'ANKRD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1859.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ANKRD11 MUTATED 10 10 8
ANKRD11 WILD-TYPE 93 76 93
'ANKRD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1860.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ANKRD11 MUTATED 12 6 6 4
ANKRD11 WILD-TYPE 71 75 72 44
'ANKRD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1861.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ANKRD11 MUTATED 2 9 8 7 0
ANKRD11 WILD-TYPE 39 70 60 79 6
'ANKRD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1862.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ANKRD11 MUTATED 12 7 5 2
ANKRD11 WILD-TYPE 67 103 50 34
'ANKRD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 1

Table S1863.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ANKRD11 MUTATED 11 4 11
ANKRD11 WILD-TYPE 64 82 97
'ANKRD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1864.  Gene #188: 'ANKRD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ANKRD11 MUTATED 13 11 2
ANKRD11 WILD-TYPE 120 97 26
'TTBK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1865.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TTBK2 MUTATED 4 9 2
TTBK2 WILD-TYPE 72 100 103
'TTBK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S1866.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TTBK2 MUTATED 5 7 3
TTBK2 WILD-TYPE 93 109 73
'TTBK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1867.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TTBK2 MUTATED 5 2 0 3
TTBK2 WILD-TYPE 42 56 26 35
'TTBK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1868.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TTBK2 MUTATED 4 4 1 1
TTBK2 WILD-TYPE 23 54 34 48
'TTBK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1869.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TTBK2 MUTATED 5 5 5
TTBK2 WILD-TYPE 98 81 96
'TTBK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1870.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TTBK2 MUTATED 5 5 4 1
TTBK2 WILD-TYPE 78 76 74 47
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1871.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TTBK2 MUTATED 2 5 4 3 0
TTBK2 WILD-TYPE 39 74 64 83 6
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1872.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TTBK2 MUTATED 3 5 4 2
TTBK2 WILD-TYPE 76 105 51 34
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1873.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TTBK2 MUTATED 6 5 3
TTBK2 WILD-TYPE 69 81 105
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1874.  Gene #189: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TTBK2 MUTATED 5 7 2
TTBK2 WILD-TYPE 128 101 26
'MIIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1875.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MIIP MUTATED 3 4 3
MIIP WILD-TYPE 73 105 102
'MIIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1876.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MIIP MUTATED 4 5 1
MIIP WILD-TYPE 94 111 75
'MIIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1877.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MIIP MUTATED 2 3 1 0
MIIP WILD-TYPE 45 55 25 38
'MIIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1878.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MIIP MUTATED 0 5 0 1
MIIP WILD-TYPE 27 53 35 48
'MIIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1879.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MIIP MUTATED 1 4 5
MIIP WILD-TYPE 102 82 96
'MIIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1880.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MIIP MUTATED 1 4 5 0
MIIP WILD-TYPE 82 77 73 48
'MIIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1881.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MIIP MUTATED 2 2 3 1 1
MIIP WILD-TYPE 39 77 65 85 5
'MIIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1882.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MIIP MUTATED 1 4 3 1
MIIP WILD-TYPE 78 106 52 35
'MIIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1883.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MIIP MUTATED 2 2 5
MIIP WILD-TYPE 73 84 103
'MIIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1884.  Gene #190: 'MIIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MIIP MUTATED 2 6 1
MIIP WILD-TYPE 131 102 27
'DDR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1885.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDR1 MUTATED 6 5 5
DDR1 WILD-TYPE 70 104 100
'DDR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1886.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDR1 MUTATED 4 6 6
DDR1 WILD-TYPE 94 110 70
'DDR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1887.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DDR1 MUTATED 3 3 0 4
DDR1 WILD-TYPE 44 55 26 34
'DDR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 1

Table S1888.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDR1 MUTATED 4 4 2 0
DDR1 WILD-TYPE 23 54 33 49

Figure S96.  Get High-res Image Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1889.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDR1 MUTATED 7 3 6
DDR1 WILD-TYPE 96 83 95
'DDR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1890.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDR1 MUTATED 8 1 4 3
DDR1 WILD-TYPE 75 80 74 45
'DDR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1891.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DDR1 MUTATED 2 5 2 6 1
DDR1 WILD-TYPE 39 74 66 80 5
'DDR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1892.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DDR1 MUTATED 5 6 3 2
DDR1 WILD-TYPE 74 104 52 34
'DDR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1893.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DDR1 MUTATED 3 5 8
DDR1 WILD-TYPE 72 81 100
'DDR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1894.  Gene #191: 'DDR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DDR1 MUTATED 8 6 2
DDR1 WILD-TYPE 125 102 26
'FAM26F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1895.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
FAM26F MUTATED 0 2 3
FAM26F WILD-TYPE 76 107 102
'FAM26F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1896.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
FAM26F MUTATED 0 3 2
FAM26F WILD-TYPE 98 113 74
'FAM26F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1897.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
FAM26F MUTATED 1 1 0 2
FAM26F WILD-TYPE 46 57 26 36
'FAM26F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1898.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
FAM26F MUTATED 2 1 0 1
FAM26F WILD-TYPE 25 57 35 48
'FAM26F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1899.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
FAM26F MUTATED 1 2 2
FAM26F WILD-TYPE 102 84 99
'FAM26F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1900.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
FAM26F MUTATED 2 2 0 1
FAM26F WILD-TYPE 81 79 78 47
'FAM26F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1901.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
FAM26F MUTATED 0 2 1 2 0
FAM26F WILD-TYPE 41 77 67 84 6
'FAM26F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1902.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
FAM26F MUTATED 3 2 0 0
FAM26F WILD-TYPE 76 108 55 36
'FAM26F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1903.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
FAM26F MUTATED 2 1 2
FAM26F WILD-TYPE 73 85 106
'FAM26F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1904.  Gene #192: 'FAM26F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
FAM26F MUTATED 4 1 0
FAM26F WILD-TYPE 129 107 28
'CRIPT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1905.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CRIPT MUTATED 1 2 0
CRIPT WILD-TYPE 75 107 105
'CRIPT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1906.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CRIPT MUTATED 0 2 1
CRIPT WILD-TYPE 98 114 75
'CRIPT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1907.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CRIPT MUTATED 2 1 0
CRIPT WILD-TYPE 101 85 101
'CRIPT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1908.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CRIPT MUTATED 1 2 0 0
CRIPT WILD-TYPE 82 79 78 48
'CRIPT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1909.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CRIPT MUTATED 1 0 2 0 0
CRIPT WILD-TYPE 40 79 66 86 6
'CRIPT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1910.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CRIPT MUTATED 1 0 1 1
CRIPT WILD-TYPE 78 110 54 35
'CRIPT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1911.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CRIPT MUTATED 1 1 1
CRIPT WILD-TYPE 74 85 107
'CRIPT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1912.  Gene #193: 'CRIPT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CRIPT MUTATED 1 1 1
CRIPT WILD-TYPE 132 107 27
'PRKRIR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 1

Table S1913.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PRKRIR MUTATED 2 1 7
PRKRIR WILD-TYPE 74 108 98
'PRKRIR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.56

Table S1914.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PRKRIR MUTATED 8 2 0
PRKRIR WILD-TYPE 90 114 76

Figure S97.  Get High-res Image Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRKRIR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1915.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PRKRIR MUTATED 1 3 0 0
PRKRIR WILD-TYPE 46 55 26 38
'PRKRIR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 1

Table S1916.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PRKRIR MUTATED 0 4 0 0
PRKRIR WILD-TYPE 27 54 35 49
'PRKRIR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1917.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PRKRIR MUTATED 3 3 4
PRKRIR WILD-TYPE 100 83 97
'PRKRIR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1918.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PRKRIR MUTATED 5 3 2 0
PRKRIR WILD-TYPE 78 78 76 48
'PRKRIR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1919.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PRKRIR MUTATED 2 2 3 2 0
PRKRIR WILD-TYPE 39 77 65 84 6
'PRKRIR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1920.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PRKRIR MUTATED 2 4 2 1
PRKRIR WILD-TYPE 77 106 53 35
'PRKRIR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1921.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PRKRIR MUTATED 2 2 5
PRKRIR WILD-TYPE 73 84 103
'PRKRIR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1922.  Gene #194: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PRKRIR MUTATED 6 2 1
PRKRIR WILD-TYPE 127 106 27
'PTPRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1923.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTPRB MUTATED 21 20 21
PTPRB WILD-TYPE 55 89 84
'PTPRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S1924.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTPRB MUTATED 27 17 18
PTPRB WILD-TYPE 71 99 58
'PTPRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1925.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PTPRB MUTATED 14 13 4 8
PTPRB WILD-TYPE 33 45 22 30
'PTPRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1926.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTPRB MUTATED 10 12 5 12
PTPRB WILD-TYPE 17 46 30 37
'PTPRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1927.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTPRB MUTATED 26 13 23
PTPRB WILD-TYPE 77 73 78
'PTPRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1928.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTPRB MUTATED 23 17 15 7
PTPRB WILD-TYPE 60 64 63 41
'PTPRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1929.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PTPRB MUTATED 10 16 13 19 2
PTPRB WILD-TYPE 31 63 55 67 4
'PTPRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1930.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PTPRB MUTATED 15 26 10 9
PTPRB WILD-TYPE 64 84 45 27
'PTPRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S1931.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PTPRB MUTATED 14 17 29
PTPRB WILD-TYPE 61 69 79
'PTPRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1932.  Gene #195: 'PTPRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PTPRB MUTATED 30 22 8
PTPRB WILD-TYPE 103 86 20
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1933.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ITPR2 MUTATED 4 8 4
ITPR2 WILD-TYPE 72 101 101
'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1934.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ITPR2 MUTATED 6 8 2
ITPR2 WILD-TYPE 92 108 74
'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S1935.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ITPR2 MUTATED 3 3 1 1
ITPR2 WILD-TYPE 44 55 25 37
'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1936.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ITPR2 MUTATED 0 3 3 2
ITPR2 WILD-TYPE 27 55 32 47
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1937.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ITPR2 MUTATED 4 7 5
ITPR2 WILD-TYPE 99 79 96
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1938.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ITPR2 MUTATED 4 5 5 2
ITPR2 WILD-TYPE 79 76 73 46
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1939.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ITPR2 MUTATED 3 5 5 2 1
ITPR2 WILD-TYPE 38 74 63 84 5
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1940.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ITPR2 MUTATED 3 6 5 2
ITPR2 WILD-TYPE 76 104 50 34
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1941.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ITPR2 MUTATED 6 2 7
ITPR2 WILD-TYPE 69 84 101
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1942.  Gene #196: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ITPR2 MUTATED 7 7 1
ITPR2 WILD-TYPE 126 101 27
'TIGIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1943.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TIGIT MUTATED 2 2 1
TIGIT WILD-TYPE 74 107 104
'TIGIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1944.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TIGIT MUTATED 1 2 2
TIGIT WILD-TYPE 97 114 74
'TIGIT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1945.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TIGIT MUTATED 0 1 0 2
TIGIT WILD-TYPE 47 57 26 36
'TIGIT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1946.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TIGIT MUTATED 0 1 1 1
TIGIT WILD-TYPE 27 57 34 48
'TIGIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S1947.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TIGIT MUTATED 4 1 0
TIGIT WILD-TYPE 99 85 101
'TIGIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S1948.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TIGIT MUTATED 2 1 0 2
TIGIT WILD-TYPE 81 80 78 46
'TIGIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S1949.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TIGIT MUTATED 1 0 1 3 0
TIGIT WILD-TYPE 40 79 67 83 6
'TIGIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.94

Table S1950.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TIGIT MUTATED 4 0 0 1
TIGIT WILD-TYPE 75 110 55 35

Figure S98.  Get High-res Image Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TIGIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1951.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TIGIT MUTATED 2 0 3
TIGIT WILD-TYPE 73 86 105
'TIGIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1952.  Gene #197: 'TIGIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TIGIT MUTATED 4 0 1
TIGIT WILD-TYPE 129 108 27
'PARP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1953.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PARP9 MUTATED 5 4 4
PARP9 WILD-TYPE 71 105 101
'PARP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1954.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PARP9 MUTATED 7 3 3
PARP9 WILD-TYPE 91 113 73
'PARP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1955.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PARP9 MUTATED 1 5 2 2
PARP9 WILD-TYPE 46 53 24 36
'PARP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1956.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PARP9 MUTATED 0 3 1 6
PARP9 WILD-TYPE 27 55 34 43
'PARP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1957.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PARP9 MUTATED 4 5 4
PARP9 WILD-TYPE 99 81 97
'PARP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1958.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PARP9 MUTATED 2 6 3 2
PARP9 WILD-TYPE 81 75 75 46
'PARP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1959.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PARP9 MUTATED 2 4 5 2 0
PARP9 WILD-TYPE 39 75 63 84 6
'PARP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1960.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PARP9 MUTATED 1 8 3 1
PARP9 WILD-TYPE 78 102 52 35
'PARP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1961.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PARP9 MUTATED 3 4 6
PARP9 WILD-TYPE 72 82 102
'PARP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1962.  Gene #198: 'PARP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PARP9 MUTATED 7 5 1
PARP9 WILD-TYPE 126 103 27
'PRKD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1963.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PRKD3 MUTATED 1 1 5
PRKD3 WILD-TYPE 75 108 100
'PRKD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1964.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PRKD3 MUTATED 3 2 2
PRKD3 WILD-TYPE 95 114 74
'PRKD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1965.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PRKD3 MUTATED 1 2 0 0
PRKD3 WILD-TYPE 46 56 26 38
'PRKD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1966.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PRKD3 MUTATED 1 2 0 0
PRKD3 WILD-TYPE 26 56 35 49
'PRKD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.95

Table S1967.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PRKD3 MUTATED 0 2 5
PRKD3 WILD-TYPE 103 84 96

Figure S99.  Get High-res Image Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRKD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1968.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PRKD3 MUTATED 3 1 3 0
PRKD3 WILD-TYPE 80 80 75 48
'PRKD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1969.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PRKD3 MUTATED 1 3 1 0 0
PRKD3 WILD-TYPE 40 76 67 86 6
'PRKD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1970.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PRKD3 MUTATED 2 1 1 1
PRKD3 WILD-TYPE 77 109 54 35
'PRKD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1971.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PRKD3 MUTATED 0 2 3
PRKD3 WILD-TYPE 75 84 105
'PRKD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1972.  Gene #199: 'PRKD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PRKD3 MUTATED 1 4 0
PRKD3 WILD-TYPE 132 104 28
'SCN10A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1973.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SCN10A MUTATED 20 23 24
SCN10A WILD-TYPE 56 86 81
'SCN10A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.17

Table S1974.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SCN10A MUTATED 36 22 9
SCN10A WILD-TYPE 62 94 67

Figure S100.  Get High-res Image Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCN10A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1975.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SCN10A MUTATED 10 16 8 8
SCN10A WILD-TYPE 37 42 18 30
'SCN10A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1976.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SCN10A MUTATED 5 15 8 14
SCN10A WILD-TYPE 22 43 27 35
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1977.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SCN10A MUTATED 27 18 22
SCN10A WILD-TYPE 76 68 79
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1978.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SCN10A MUTATED 23 15 17 12
SCN10A WILD-TYPE 60 66 61 36
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1979.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SCN10A MUTATED 11 16 20 18 0
SCN10A WILD-TYPE 30 63 48 68 6
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1980.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SCN10A MUTATED 16 27 13 9
SCN10A WILD-TYPE 63 83 42 27
'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1981.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SCN10A MUTATED 18 16 31
SCN10A WILD-TYPE 57 70 77
'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1982.  Gene #200: 'SCN10A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SCN10A MUTATED 34 24 7
SCN10A WILD-TYPE 99 84 21
'CALU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1983.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CALU MUTATED 1 5 1
CALU WILD-TYPE 75 104 104
'CALU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1984.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CALU MUTATED 3 4 0
CALU WILD-TYPE 95 112 76
'CALU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 1

Table S1985.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CALU MUTATED 1 0 1 3
CALU WILD-TYPE 46 58 25 35
'CALU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1986.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CALU MUTATED 0 2 2 1
CALU WILD-TYPE 27 56 33 48
'CALU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1987.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CALU MUTATED 2 4 1
CALU WILD-TYPE 101 82 100
'CALU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1988.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CALU MUTATED 2 2 1 2
CALU WILD-TYPE 81 79 77 46
'CALU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1989.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CALU MUTATED 0 3 2 1 0
CALU WILD-TYPE 41 76 66 85 6
'CALU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1990.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CALU MUTATED 2 3 1 0
CALU WILD-TYPE 77 107 54 36
'CALU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1991.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CALU MUTATED 4 1 1
CALU WILD-TYPE 71 85 107
'CALU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1992.  Gene #201: 'CALU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CALU MUTATED 4 2 0
CALU WILD-TYPE 129 106 28
'SCAI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1993.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SCAI MUTATED 2 2 1
SCAI WILD-TYPE 74 107 104
'SCAI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1994.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SCAI MUTATED 2 2 1
SCAI WILD-TYPE 96 114 75
'SCAI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1995.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SCAI MUTATED 2 2 1 0
SCAI WILD-TYPE 45 56 25 38
'SCAI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1996.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SCAI MUTATED 0 1 1 3
SCAI WILD-TYPE 27 57 34 46
'SCAI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1997.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SCAI MUTATED 3 1 1
SCAI WILD-TYPE 100 85 100
'SCAI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1998.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SCAI MUTATED 2 1 1 1
SCAI WILD-TYPE 81 80 77 47
'SCAI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1999.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SCAI MUTATED 1 2 0 2 0
SCAI WILD-TYPE 40 77 68 84 6
'SCAI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2000.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SCAI MUTATED 2 2 1 0
SCAI WILD-TYPE 77 108 54 36
'SCAI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S2001.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SCAI MUTATED 2 2 1
SCAI WILD-TYPE 73 84 107
'SCAI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2002.  Gene #202: 'SCAI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SCAI MUTATED 2 3 0
SCAI WILD-TYPE 131 105 28
'IGFL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S2003.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IGFL3 MUTATED 0 3 1
IGFL3 WILD-TYPE 76 106 104
'IGFL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.8

Table S2004.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IGFL3 MUTATED 4 0 0
IGFL3 WILD-TYPE 94 116 76

Figure S101.  Get High-res Image Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGFL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2005.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IGFL3 MUTATED 2 1 1
IGFL3 WILD-TYPE 101 85 100
'IGFL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S2006.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IGFL3 MUTATED 2 2 0 0
IGFL3 WILD-TYPE 81 79 78 48
'IGFL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2007.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IGFL3 MUTATED 0 1 1 2 0
IGFL3 WILD-TYPE 41 78 67 84 6
'IGFL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2008.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IGFL3 MUTATED 2 1 1 0
IGFL3 WILD-TYPE 77 109 54 36
'IGFL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S2009.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IGFL3 MUTATED 2 0 2
IGFL3 WILD-TYPE 73 86 106
'IGFL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S2010.  Gene #203: 'IGFL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IGFL3 MUTATED 3 1 0
IGFL3 WILD-TYPE 130 107 28
'ZMYM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2011.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZMYM1 MUTATED 4 5 4
ZMYM1 WILD-TYPE 72 104 101
'ZMYM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2012.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZMYM1 MUTATED 5 5 3
ZMYM1 WILD-TYPE 93 111 73
'ZMYM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S2013.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
ZMYM1 MUTATED 1 3 2 2
ZMYM1 WILD-TYPE 46 55 24 36
'ZMYM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S2014.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZMYM1 MUTATED 1 1 3 3
ZMYM1 WILD-TYPE 26 57 32 46
'ZMYM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2015.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZMYM1 MUTATED 5 5 3
ZMYM1 WILD-TYPE 98 81 98
'ZMYM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S2016.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZMYM1 MUTATED 4 4 2 3
ZMYM1 WILD-TYPE 79 77 76 45
'ZMYM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2017.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ZMYM1 MUTATED 2 1 3 5 1
ZMYM1 WILD-TYPE 39 78 65 81 5
'ZMYM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2018.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ZMYM1 MUTATED 3 6 1 2
ZMYM1 WILD-TYPE 76 104 54 34
'ZMYM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S2019.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ZMYM1 MUTATED 3 1 7
ZMYM1 WILD-TYPE 72 85 101
'ZMYM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S2020.  Gene #204: 'ZMYM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ZMYM1 MUTATED 7 2 2
ZMYM1 WILD-TYPE 126 106 26
'MYO5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S2021.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYO5B MUTATED 12 16 16
MYO5B WILD-TYPE 64 93 89
'MYO5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S2022.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYO5B MUTATED 19 17 8
MYO5B WILD-TYPE 79 99 68
'MYO5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S2023.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MYO5B MUTATED 7 11 3 9
MYO5B WILD-TYPE 40 47 23 29
'MYO5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S2024.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYO5B MUTATED 5 12 4 9
MYO5B WILD-TYPE 22 46 31 40
'MYO5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2025.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYO5B MUTATED 15 17 12
MYO5B WILD-TYPE 88 69 89
'MYO5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2026.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYO5B MUTATED 14 9 11 10
MYO5B WILD-TYPE 69 72 67 38
'MYO5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S2027.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MYO5B MUTATED 7 14 10 12 0
MYO5B WILD-TYPE 34 65 58 74 6
'MYO5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S2028.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MYO5B MUTATED 12 16 9 6
MYO5B WILD-TYPE 67 94 46 30
'MYO5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S2029.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MYO5B MUTATED 14 13 16
MYO5B WILD-TYPE 61 73 92
'MYO5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S2030.  Gene #205: 'MYO5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MYO5B MUTATED 24 14 5
MYO5B WILD-TYPE 109 94 23
'STK31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2031.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
STK31 MUTATED 9 17 12
STK31 WILD-TYPE 67 92 93
'STK31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.95

Table S2032.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
STK31 MUTATED 14 20 4
STK31 WILD-TYPE 84 96 72

Figure S102.  Get High-res Image Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S2033.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
STK31 MUTATED 6 8 2 9
STK31 WILD-TYPE 41 50 24 29
'STK31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2034.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
STK31 MUTATED 4 11 5 5
STK31 WILD-TYPE 23 47 30 44
'STK31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00193 (Fisher's exact test), Q value = 0.41

Table S2035.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
STK31 MUTATED 14 19 5
STK31 WILD-TYPE 89 67 96

Figure S103.  Get High-res Image Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.94

Table S2036.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
STK31 MUTATED 10 15 4 9
STK31 WILD-TYPE 73 66 74 39

Figure S104.  Get High-res Image Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STK31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S2037.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
STK31 MUTATED 5 8 11 12 0
STK31 WILD-TYPE 36 71 57 74 6
'STK31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S2038.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
STK31 MUTATED 11 15 6 4
STK31 WILD-TYPE 68 95 49 32
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S2039.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
STK31 MUTATED 14 7 13
STK31 WILD-TYPE 61 79 95
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2040.  Gene #206: 'STK31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
STK31 MUTATED 21 11 2
STK31 WILD-TYPE 112 97 26
'PCDH18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.87

Table S2041.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PCDH18 MUTATED 18 22 10
PCDH18 WILD-TYPE 58 87 95

Figure S105.  Get High-res Image Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCDH18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2042.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PCDH18 MUTATED 15 21 14
PCDH18 WILD-TYPE 83 95 62
'PCDH18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.8

Table S2043.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PCDH18 MUTATED 12 8 1 12
PCDH18 WILD-TYPE 35 50 25 26

Figure S106.  Get High-res Image Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PCDH18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S2044.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PCDH18 MUTATED 4 14 7 8
PCDH18 WILD-TYPE 23 44 28 41
'PCDH18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S2045.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PCDH18 MUTATED 15 19 16
PCDH18 WILD-TYPE 88 67 85
'PCDH18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S2046.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PCDH18 MUTATED 12 16 15 7
PCDH18 WILD-TYPE 71 65 63 41
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S2047.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PCDH18 MUTATED 5 16 11 17 0
PCDH18 WILD-TYPE 36 63 57 69 6
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S2048.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PCDH18 MUTATED 12 20 12 5
PCDH18 WILD-TYPE 67 90 43 31
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 1

Table S2049.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PCDH18 MUTATED 7 19 21
PCDH18 WILD-TYPE 68 67 87
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2050.  Gene #207: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PCDH18 MUTATED 23 19 5
PCDH18 WILD-TYPE 110 89 23
'SPATA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S2051.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SPATA8 MUTATED 5 5 3
SPATA8 WILD-TYPE 71 104 102
'SPATA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2052.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SPATA8 MUTATED 6 4 3
SPATA8 WILD-TYPE 92 112 73
'SPATA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S2053.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SPATA8 MUTATED 1 1 1 1
SPATA8 WILD-TYPE 46 57 25 37
'SPATA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S2054.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SPATA8 MUTATED 1 2 0 1
SPATA8 WILD-TYPE 26 56 35 48
'SPATA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S2055.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SPATA8 MUTATED 3 6 4
SPATA8 WILD-TYPE 100 80 97
'SPATA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S2056.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SPATA8 MUTATED 2 5 3 3
SPATA8 WILD-TYPE 81 76 75 45
'SPATA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S2057.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SPATA8 MUTATED 1 3 3 5 0
SPATA8 WILD-TYPE 40 76 65 81 6
'SPATA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2058.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SPATA8 MUTATED 1 8 2 1
SPATA8 WILD-TYPE 78 102 53 35
'SPATA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S2059.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SPATA8 MUTATED 6 4 2
SPATA8 WILD-TYPE 69 82 106
'SPATA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2060.  Gene #208: 'SPATA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SPATA8 MUTATED 6 5 1
SPATA8 WILD-TYPE 127 103 27
'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S2061.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IBTK MUTATED 2 3 0
IBTK WILD-TYPE 74 106 105
'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2062.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IBTK MUTATED 2 2 1
IBTK WILD-TYPE 96 114 75
'IBTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S2063.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
IBTK MUTATED 0 2 1 0
IBTK WILD-TYPE 47 56 25 38
'IBTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S2064.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IBTK MUTATED 0 0 1 2
IBTK WILD-TYPE 27 58 34 47
'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S2065.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IBTK MUTATED 3 1 1
IBTK WILD-TYPE 100 85 100
'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.81

Table S2066.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IBTK MUTATED 2 0 0 3
IBTK WILD-TYPE 81 81 78 45

Figure S107.  Get High-res Image Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S2067.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
IBTK MUTATED 1 0 0 3 0
IBTK WILD-TYPE 40 79 68 83 6
'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2068.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
IBTK MUTATED 1 3 0 0
IBTK WILD-TYPE 78 107 55 36
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S2069.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
IBTK MUTATED 1 0 3
IBTK WILD-TYPE 74 86 105
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S2070.  Gene #209: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
IBTK MUTATED 4 0 0
IBTK WILD-TYPE 129 108 28
'AHNAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S2071.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
AHNAK MUTATED 12 18 11
AHNAK WILD-TYPE 64 91 94
'AHNAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S2072.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
AHNAK MUTATED 15 19 7
AHNAK WILD-TYPE 83 97 69
'AHNAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S2073.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
AHNAK MUTATED 6 14 1 7
AHNAK WILD-TYPE 41 44 25 31
'AHNAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S2074.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
AHNAK MUTATED 2 10 8 8
AHNAK WILD-TYPE 25 48 27 41
'AHNAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 1

Table S2075.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
AHNAK MUTATED 15 17 9
AHNAK WILD-TYPE 88 69 92
'AHNAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2076.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
AHNAK MUTATED 12 15 6 8
AHNAK WILD-TYPE 71 66 72 40
'AHNAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S2077.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
AHNAK MUTATED 4 8 13 14 0
AHNAK WILD-TYPE 37 71 55 72 6
'AHNAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S2078.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
AHNAK MUTATED 11 16 8 4
AHNAK WILD-TYPE 68 94 47 32
'AHNAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S2079.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
AHNAK MUTATED 12 7 20
AHNAK WILD-TYPE 63 79 88
'AHNAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S2080.  Gene #210: 'AHNAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
AHNAK MUTATED 24 12 3
AHNAK WILD-TYPE 109 96 25
'PPP1R13L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S2081.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PPP1R13L MUTATED 3 7 4
PPP1R13L WILD-TYPE 73 102 101
'PPP1R13L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S2082.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PPP1R13L MUTATED 7 5 2
PPP1R13L WILD-TYPE 91 111 74
'PPP1R13L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S2083.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PPP1R13L MUTATED 3 2 0 4
PPP1R13L WILD-TYPE 44 56 26 34
'PPP1R13L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S2084.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PPP1R13L MUTATED 2 6 0 1
PPP1R13L WILD-TYPE 25 52 35 48
'PPP1R13L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2085.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PPP1R13L MUTATED 6 3 5
PPP1R13L WILD-TYPE 97 83 96
'PPP1R13L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S2086.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PPP1R13L MUTATED 5 3 4 2
PPP1R13L WILD-TYPE 78 78 74 46
'PPP1R13L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S2087.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PPP1R13L MUTATED 0 6 6 2 0
PPP1R13L WILD-TYPE 41 73 62 84 6
'PPP1R13L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S2088.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PPP1R13L MUTATED 4 5 5 0
PPP1R13L WILD-TYPE 75 105 50 36
'PPP1R13L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2089.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PPP1R13L MUTATED 4 4 6
PPP1R13L WILD-TYPE 71 82 102
'PPP1R13L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S2090.  Gene #211: 'PPP1R13L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PPP1R13L MUTATED 8 6 0
PPP1R13L WILD-TYPE 125 102 28
'PRM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2091.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PRM2 MUTATED 0 3 2
PRM2 WILD-TYPE 76 106 103
'PRM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2092.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PRM2 MUTATED 2 2 1
PRM2 WILD-TYPE 96 114 75
'PRM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S2093.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PRM2 MUTATED 1 1 1 0
PRM2 WILD-TYPE 46 57 25 38
'PRM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S2094.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PRM2 MUTATED 0 1 0 2
PRM2 WILD-TYPE 27 57 35 47
'PRM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S2095.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PRM2 MUTATED 1 3 1
PRM2 WILD-TYPE 102 83 100
'PRM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S2096.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PRM2 MUTATED 2 2 0 1
PRM2 WILD-TYPE 81 79 78 47
'PRM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S2097.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PRM2 MUTATED 0 0 1 3 0
PRM2 WILD-TYPE 41 79 67 83 6
'PRM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2098.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PRM2 MUTATED 1 3 0 0
PRM2 WILD-TYPE 78 107 55 36
'PRM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S2099.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PRM2 MUTATED 1 0 3
PRM2 WILD-TYPE 74 86 105
'PRM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S2100.  Gene #212: 'PRM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PRM2 MUTATED 4 0 0
PRM2 WILD-TYPE 129 108 28
'AFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S2101.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
AFP MUTATED 6 3 8
AFP WILD-TYPE 70 106 97
'AFP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.81

Table S2102.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
AFP MUTATED 11 5 1
AFP WILD-TYPE 87 111 75

Figure S108.  Get High-res Image Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S2103.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
AFP MUTATED 2 2 2 4
AFP WILD-TYPE 45 56 24 34
'AFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S2104.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
AFP MUTATED 1 3 3 3
AFP WILD-TYPE 26 55 32 46
'AFP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.95

Table S2105.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
AFP MUTATED 11 2 4
AFP WILD-TYPE 92 84 97

Figure S109.  Get High-res Image Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AFP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2106.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
AFP MUTATED 8 3 3 3
AFP WILD-TYPE 75 78 75 45
'AFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S2107.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
AFP MUTATED 2 2 4 7 1
AFP WILD-TYPE 39 77 64 79 5
'AFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S2108.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
AFP MUTATED 5 7 2 2
AFP WILD-TYPE 74 103 53 34
'AFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S2109.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
AFP MUTATED 5 2 8
AFP WILD-TYPE 70 84 100
'AFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S2110.  Gene #213: 'AFP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
AFP MUTATED 10 4 1
AFP WILD-TYPE 123 104 27
'SNCAIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2111.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SNCAIP MUTATED 13 23 17
SNCAIP WILD-TYPE 63 86 88
'SNCAIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2112.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SNCAIP MUTATED 18 24 11
SNCAIP WILD-TYPE 80 92 65
'SNCAIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2113.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SNCAIP MUTATED 12 10 3 6
SNCAIP WILD-TYPE 35 48 23 32
'SNCAIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S2114.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SNCAIP MUTATED 6 11 6 8
SNCAIP WILD-TYPE 21 47 29 41
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S2115.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SNCAIP MUTATED 18 18 17
SNCAIP WILD-TYPE 85 68 84
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S2116.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SNCAIP MUTATED 13 15 13 12
SNCAIP WILD-TYPE 70 66 65 36
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S2117.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SNCAIP MUTATED 8 13 11 19 0
SNCAIP WILD-TYPE 33 66 57 67 6
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S2118.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SNCAIP MUTATED 10 26 10 5
SNCAIP WILD-TYPE 69 84 45 31
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S2119.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SNCAIP MUTATED 14 14 23
SNCAIP WILD-TYPE 61 72 85
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S2120.  Gene #214: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SNCAIP MUTATED 31 15 5
SNCAIP WILD-TYPE 102 93 23
'DDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00485 (Fisher's exact test), Q value = 0.55

Table S2121.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDHD1 MUTATED 5 0 1
DDHD1 WILD-TYPE 71 109 104

Figure S110.  Get High-res Image Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 1

Table S2122.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDHD1 MUTATED 3 0 3
DDHD1 WILD-TYPE 95 116 73
'DDHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2123.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DDHD1 MUTATED 2 1 0 1
DDHD1 WILD-TYPE 45 57 26 37
'DDHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2124.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDHD1 MUTATED 0 2 1 1
DDHD1 WILD-TYPE 27 56 34 48
'DDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S2125.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDHD1 MUTATED 3 1 2
DDHD1 WILD-TYPE 100 85 99
'DDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S2126.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDHD1 MUTATED 3 1 2 0
DDHD1 WILD-TYPE 80 80 76 48
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S2127.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DDHD1 MUTATED 1 2 2 1 0
DDHD1 WILD-TYPE 40 77 66 85 6
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S2128.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DDHD1 MUTATED 1 3 1 1
DDHD1 WILD-TYPE 78 107 54 35
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S2129.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DDHD1 MUTATED 0 2 4
DDHD1 WILD-TYPE 75 84 104
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S2130.  Gene #215: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DDHD1 MUTATED 3 2 1
DDHD1 WILD-TYPE 130 106 27
'PLXNC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S2131.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PLXNC1 MUTATED 4 9 4
PLXNC1 WILD-TYPE 72 100 101
'PLXNC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S2132.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PLXNC1 MUTATED 8 6 3
PLXNC1 WILD-TYPE 90 110 73
'PLXNC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2133.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PLXNC1 MUTATED 2 6 1 0
PLXNC1 WILD-TYPE 45 52 25 38
'PLXNC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S2134.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PLXNC1 MUTATED 1 5 1 2
PLXNC1 WILD-TYPE 26 53 34 47
'PLXNC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S2135.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PLXNC1 MUTATED 8 6 3
PLXNC1 WILD-TYPE 95 80 98
'PLXNC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S2136.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PLXNC1 MUTATED 3 6 3 5
PLXNC1 WILD-TYPE 80 75 75 43
'PLXNC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2137.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PLXNC1 MUTATED 3 3 6 5 0
PLXNC1 WILD-TYPE 38 76 62 81 6
'PLXNC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S2138.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PLXNC1 MUTATED 6 7 3 1
PLXNC1 WILD-TYPE 73 103 52 35
'PLXNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S2139.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PLXNC1 MUTATED 7 2 8
PLXNC1 WILD-TYPE 68 84 100
'PLXNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S2140.  Gene #216: 'PLXNC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PLXNC1 MUTATED 12 4 1
PLXNC1 WILD-TYPE 121 104 27
'TEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S2141.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TEC MUTATED 1 7 5
TEC WILD-TYPE 75 102 100
'TEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S2142.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TEC MUTATED 5 7 1
TEC WILD-TYPE 93 109 75
'TEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S2143.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TEC MUTATED 3 1 1 1
TEC WILD-TYPE 44 57 25 37
'TEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S2144.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TEC MUTATED 2 2 1 1
TEC WILD-TYPE 25 56 34 48
'TEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S2145.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TEC MUTATED 4 7 2
TEC WILD-TYPE 99 79 99
'TEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S2146.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TEC MUTATED 2 4 2 5
TEC WILD-TYPE 81 77 76 43
'TEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S2147.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TEC MUTATED 2 4 2 3 1
TEC WILD-TYPE 39 75 66 83 5
'TEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S2148.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TEC MUTATED 4 4 2 2
TEC WILD-TYPE 75 106 53 34
'TEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S2149.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TEC MUTATED 4 3 4
TEC WILD-TYPE 71 83 104
'TEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2150.  Gene #217: 'TEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TEC MUTATED 6 4 1
TEC WILD-TYPE 127 104 27
'SYNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S2151.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SYNE1 MUTATED 19 32 23
SYNE1 WILD-TYPE 57 77 82
'SYNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2152.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SYNE1 MUTATED 27 34 13
SYNE1 WILD-TYPE 71 82 63
'SYNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S2153.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SYNE1 MUTATED 16 15 6 9
SYNE1 WILD-TYPE 31 43 20 29
'SYNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2154.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SYNE1 MUTATED 7 17 7 15
SYNE1 WILD-TYPE 20 41 28 34
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S2155.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SYNE1 MUTATED 26 25 23
SYNE1 WILD-TYPE 77 61 78
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S2156.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SYNE1 MUTATED 22 23 17 12
SYNE1 WILD-TYPE 61 58 61 36
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S2157.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SYNE1 MUTATED 11 19 17 26 0
SYNE1 WILD-TYPE 30 60 51 60 6
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S2158.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SYNE1 MUTATED 16 33 15 9
SYNE1 WILD-TYPE 63 77 40 27
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2159.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SYNE1 MUTATED 22 20 29
SYNE1 WILD-TYPE 53 66 79
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2160.  Gene #218: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SYNE1 MUTATED 38 25 8
SYNE1 WILD-TYPE 95 83 20
'ACBD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2161.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACBD5 MUTATED 2 2 1
ACBD5 WILD-TYPE 74 107 104
'ACBD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S2162.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACBD5 MUTATED 4 1 0
ACBD5 WILD-TYPE 94 115 76
'ACBD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S2163.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACBD5 MUTATED 3 2 0
ACBD5 WILD-TYPE 100 84 101
'ACBD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S2164.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACBD5 MUTATED 3 1 0 1
ACBD5 WILD-TYPE 80 80 78 47
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S2165.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
ACBD5 MUTATED 1 1 2 1 0
ACBD5 WILD-TYPE 40 78 66 85 6
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S2166.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
ACBD5 MUTATED 0 3 1 1
ACBD5 WILD-TYPE 79 107 54 35
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S2167.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
ACBD5 MUTATED 2 0 3
ACBD5 WILD-TYPE 73 86 105
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2168.  Gene #219: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
ACBD5 MUTATED 2 2 1
ACBD5 WILD-TYPE 131 106 27
'NOMO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S2169.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NOMO1 MUTATED 6 5 5
NOMO1 WILD-TYPE 70 104 100
'NOMO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S2170.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NOMO1 MUTATED 9 4 3
NOMO1 WILD-TYPE 89 112 73
'NOMO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S2171.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NOMO1 MUTATED 3 1 0 1
NOMO1 WILD-TYPE 44 57 26 37
'NOMO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2172.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NOMO1 MUTATED 1 2 1 1
NOMO1 WILD-TYPE 26 56 34 48
'NOMO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S2173.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NOMO1 MUTATED 7 3 6
NOMO1 WILD-TYPE 96 83 95
'NOMO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S2174.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NOMO1 MUTATED 5 5 5 1
NOMO1 WILD-TYPE 78 76 73 47
'NOMO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S2175.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NOMO1 MUTATED 1 5 4 6 0
NOMO1 WILD-TYPE 40 74 64 80 6
'NOMO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S2176.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NOMO1 MUTATED 2 10 3 1
NOMO1 WILD-TYPE 77 100 52 35
'NOMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S2177.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NOMO1 MUTATED 3 5 8
NOMO1 WILD-TYPE 72 81 100
'NOMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S2178.  Gene #220: 'NOMO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NOMO1 MUTATED 9 6 1
NOMO1 WILD-TYPE 124 102 27
'CD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S2179.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD2 MUTATED 5 7 10
CD2 WILD-TYPE 71 102 95
'CD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S2180.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD2 MUTATED 9 8 5
CD2 WILD-TYPE 89 108 71
'CD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2181.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CD2 MUTATED 4 6 0 3
CD2 WILD-TYPE 43 52 26 35
'CD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S2182.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD2 MUTATED 2 4 2 5
CD2 WILD-TYPE 25 54 33 44
'CD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2183.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD2 MUTATED 7 7 8
CD2 WILD-TYPE 96 79 93
'CD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S2184.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD2 MUTATED 7 5 6 4
CD2 WILD-TYPE 76 76 72 44
'CD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2185.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CD2 MUTATED 4 5 5 7 0
CD2 WILD-TYPE 37 74 63 79 6
'CD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S2186.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CD2 MUTATED 6 9 3 3
CD2 WILD-TYPE 73 101 52 33
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2187.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CD2 MUTATED 5 6 10
CD2 WILD-TYPE 70 80 98
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S2188.  Gene #221: 'CD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CD2 MUTATED 13 5 3
CD2 WILD-TYPE 120 103 25
'POLN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S2189.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
POLN MUTATED 1 7 2
POLN WILD-TYPE 75 102 103
'POLN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S2190.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
POLN MUTATED 2 6 2
POLN WILD-TYPE 96 110 74
'POLN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S2191.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
POLN MUTATED 3 2 0 2
POLN WILD-TYPE 44 56 26 36
'POLN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S2192.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
POLN MUTATED 3 1 2 1
POLN WILD-TYPE 24 57 33 48
'POLN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S2193.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
POLN MUTATED 5 3 2
POLN WILD-TYPE 98 83 99
'POLN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S2194.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
POLN MUTATED 5 2 1 2
POLN WILD-TYPE 78 79 77 46
'POLN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S2195.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
POLN MUTATED 2 3 2 2 0
POLN WILD-TYPE 39 76 66 84 6
'POLN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2196.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
POLN MUTATED 2 2 2 3
POLN WILD-TYPE 77 108 53 33
'POLN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S2197.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
POLN MUTATED 3 3 2
POLN WILD-TYPE 72 83 106
'POLN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S2198.  Gene #222: 'POLN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
POLN MUTATED 3 4 1
POLN WILD-TYPE 130 104 27
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S2199.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
LIPH MUTATED 3 3 6
LIPH WILD-TYPE 73 106 99
'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S2200.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
LIPH MUTATED 6 4 2
LIPH WILD-TYPE 92 112 74
'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S2201.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
LIPH MUTATED 3 2 1 1
LIPH WILD-TYPE 44 56 25 37
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 1

Table S2202.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
LIPH MUTATED 3 0 2 2
LIPH WILD-TYPE 24 58 33 47
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S2203.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
LIPH MUTATED 6 3 3
LIPH WILD-TYPE 97 83 98
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S2204.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
LIPH MUTATED 6 4 2 0
LIPH WILD-TYPE 77 77 76 48
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S2205.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
LIPH MUTATED 0 5 3 3 0
LIPH WILD-TYPE 41 74 65 83 6
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S2206.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
LIPH MUTATED 3 6 2 0
LIPH WILD-TYPE 76 104 53 36
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2207.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
LIPH MUTATED 2 4 5
LIPH WILD-TYPE 73 82 103
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S2208.  Gene #223: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
LIPH MUTATED 5 6 0
LIPH WILD-TYPE 128 102 28
'CLCN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S2209.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CLCN6 MUTATED 2 6 4
CLCN6 WILD-TYPE 74 103 101
'CLCN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2210.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CLCN6 MUTATED 4 5 3
CLCN6 WILD-TYPE 94 111 73
'CLCN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S2211.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CLCN6 MUTATED 3 2 1 2
CLCN6 WILD-TYPE 44 56 25 36
'CLCN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S2212.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CLCN6 MUTATED 3 3 0 2
CLCN6 WILD-TYPE 24 55 35 47
'CLCN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2213.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CLCN6 MUTATED 3 4 5
CLCN6 WILD-TYPE 100 82 96
'CLCN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2214.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CLCN6 MUTATED 3 4 4 1
CLCN6 WILD-TYPE 80 77 74 47
'CLCN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S2215.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CLCN6 MUTATED 2 5 2 2 0
CLCN6 WILD-TYPE 39 74 66 84 6
'CLCN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S2216.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CLCN6 MUTATED 1 3 5 2
CLCN6 WILD-TYPE 78 107 50 34
'CLCN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S2217.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CLCN6 MUTATED 2 6 3
CLCN6 WILD-TYPE 73 80 105
'CLCN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S2218.  Gene #224: 'CLCN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CLCN6 MUTATED 2 7 2
CLCN6 WILD-TYPE 131 101 26
'NEK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S2219.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NEK5 MUTATED 5 9 3
NEK5 WILD-TYPE 71 100 102
'NEK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S2220.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NEK5 MUTATED 9 5 3
NEK5 WILD-TYPE 89 111 73
'NEK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2221.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
NEK5 MUTATED 2 4 3 1
NEK5 WILD-TYPE 45 54 23 37
'NEK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S2222.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NEK5 MUTATED 1 3 2 4
NEK5 WILD-TYPE 26 55 33 45
'NEK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 1

Table S2223.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NEK5 MUTATED 7 8 2
NEK5 WILD-TYPE 96 78 99
'NEK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.99

Table S2224.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NEK5 MUTATED 7 8 1 1
NEK5 WILD-TYPE 76 73 77 47

Figure S111.  Get High-res Image Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NEK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S2225.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
NEK5 MUTATED 4 1 5 7 0
NEK5 WILD-TYPE 37 78 63 79 6
'NEK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2226.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
NEK5 MUTATED 4 8 2 3
NEK5 WILD-TYPE 75 102 53 33
'NEK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 0.55

Table S2227.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
NEK5 MUTATED 6 0 10
NEK5 WILD-TYPE 69 86 98

Figure S112.  Get High-res Image Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NEK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S2228.  Gene #225: 'NEK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
NEK5 MUTATED 10 4 2
NEK5 WILD-TYPE 123 104 26
'BRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S2229.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BRF1 MUTATED 3 2 0
BRF1 WILD-TYPE 73 107 105
'BRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2230.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BRF1 MUTATED 2 2 1
BRF1 WILD-TYPE 96 114 75
'BRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S2231.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
BRF1 MUTATED 0 2 1 0
BRF1 WILD-TYPE 47 56 25 38
'BRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2232.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BRF1 MUTATED 0 1 1 1
BRF1 WILD-TYPE 27 57 34 48
'BRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2233.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BRF1 MUTATED 1 3 1
BRF1 WILD-TYPE 102 83 100
'BRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S2234.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BRF1 MUTATED 0 1 2 2
BRF1 WILD-TYPE 83 80 76 46
'BRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S2235.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
BRF1 MUTATED 1 1 0 2 1
BRF1 WILD-TYPE 40 78 68 84 5
'BRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S2236.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
BRF1 MUTATED 1 2 1 1
BRF1 WILD-TYPE 78 108 54 35
'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S2237.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
BRF1 MUTATED 3 1 1
BRF1 WILD-TYPE 72 85 107
'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S2238.  Gene #226: 'BRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
BRF1 MUTATED 2 2 1
BRF1 WILD-TYPE 131 106 27
'GRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2239.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GRIN1 MUTATED 2 4 4
GRIN1 WILD-TYPE 74 105 101
'GRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 1

Table S2240.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GRIN1 MUTATED 7 2 1
GRIN1 WILD-TYPE 91 114 75
'GRIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S2241.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GRIN1 MUTATED 0 4 0 1
GRIN1 WILD-TYPE 47 54 26 37
'GRIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S2242.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GRIN1 MUTATED 0 2 1 2
GRIN1 WILD-TYPE 27 56 34 47
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S2243.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GRIN1 MUTATED 5 4 1
GRIN1 WILD-TYPE 98 82 100
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S2244.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GRIN1 MUTATED 4 3 1 2
GRIN1 WILD-TYPE 79 78 77 46
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S2245.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GRIN1 MUTATED 1 1 4 3 0
GRIN1 WILD-TYPE 40 78 64 83 6
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S2246.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GRIN1 MUTATED 1 6 1 1
GRIN1 WILD-TYPE 78 104 54 35
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.93

Table S2247.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GRIN1 MUTATED 2 0 7
GRIN1 WILD-TYPE 73 86 101

Figure S113.  Get High-res Image Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S2248.  Gene #227: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GRIN1 MUTATED 6 2 1
GRIN1 WILD-TYPE 127 106 27
'POLA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S2249.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
POLA2 MUTATED 2 5 1
POLA2 WILD-TYPE 74 104 104
'POLA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2250.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
POLA2 MUTATED 3 3 2
POLA2 WILD-TYPE 95 113 74
'POLA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2251.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
POLA2 MUTATED 1 4 0 2
POLA2 WILD-TYPE 46 54 26 36
'POLA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2252.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
POLA2 MUTATED 0 4 1 2
POLA2 WILD-TYPE 27 54 34 47
'POLA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S2253.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
POLA2 MUTATED 3 4 1
POLA2 WILD-TYPE 100 82 100
'POLA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2254.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
POLA2 MUTATED 2 4 1 1
POLA2 WILD-TYPE 81 77 77 47
'POLA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S2255.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
POLA2 MUTATED 0 2 5 1 0
POLA2 WILD-TYPE 41 77 63 85 6
'POLA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S2256.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
POLA2 MUTATED 1 3 4 0
POLA2 WILD-TYPE 78 107 51 36
'POLA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S2257.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
POLA2 MUTATED 3 2 2
POLA2 WILD-TYPE 72 84 106
'POLA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2258.  Gene #228: 'POLA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
POLA2 MUTATED 4 3 0
POLA2 WILD-TYPE 129 105 28
'UBR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2259.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UBR5 MUTATED 6 9 6
UBR5 WILD-TYPE 70 100 99
'UBR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2260.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UBR5 MUTATED 10 8 3
UBR5 WILD-TYPE 88 108 73
'UBR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S2261.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
UBR5 MUTATED 2 3 2 5
UBR5 WILD-TYPE 45 55 24 33
'UBR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2262.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
UBR5 MUTATED 3 4 3 2
UBR5 WILD-TYPE 24 54 32 47
'UBR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2263.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UBR5 MUTATED 8 7 6
UBR5 WILD-TYPE 95 79 95
'UBR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2264.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UBR5 MUTATED 7 6 4 4
UBR5 WILD-TYPE 76 75 74 44
'UBR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S2265.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UBR5 MUTATED 2 7 2 9 0
UBR5 WILD-TYPE 39 72 66 77 6
'UBR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S2266.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UBR5 MUTATED 7 9 2 2
UBR5 WILD-TYPE 72 101 53 34
'UBR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S2267.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UBR5 MUTATED 7 4 8
UBR5 WILD-TYPE 68 82 100
'UBR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S2268.  Gene #229: 'UBR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UBR5 MUTATED 8 9 2
UBR5 WILD-TYPE 125 99 26
'AP2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S2269.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
AP2B1 MUTATED 2 4 2
AP2B1 WILD-TYPE 74 105 103
'AP2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S2270.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
AP2B1 MUTATED 1 5 2
AP2B1 WILD-TYPE 97 111 74
'AP2B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S2271.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
AP2B1 MUTATED 1 3 0 2
AP2B1 WILD-TYPE 46 55 26 36
'AP2B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2272.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
AP2B1 MUTATED 2 2 1 1
AP2B1 WILD-TYPE 25 56 34 48
'AP2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S2273.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
AP2B1 MUTATED 1 5 2
AP2B1 WILD-TYPE 102 81 99
'AP2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 1

Table S2274.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
AP2B1 MUTATED 0 4 1 3
AP2B1 WILD-TYPE 83 77 77 45
'AP2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S2275.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
AP2B1 MUTATED 0 2 2 3 1
AP2B1 WILD-TYPE 41 77 66 83 5
'AP2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S2276.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
AP2B1 MUTATED 3 3 2 0
AP2B1 WILD-TYPE 76 107 53 36
'AP2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S2277.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
AP2B1 MUTATED 3 1 4
AP2B1 WILD-TYPE 72 85 104
'AP2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2278.  Gene #230: 'AP2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
AP2B1 MUTATED 5 3 0
AP2B1 WILD-TYPE 128 105 28
'MMP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S2279.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MMP11 MUTATED 3 4 0
MMP11 WILD-TYPE 73 105 105
'MMP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S2280.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MMP11 MUTATED 5 1 1
MMP11 WILD-TYPE 93 115 75
'MMP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2281.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MMP11 MUTATED 1 2 0 1
MMP11 WILD-TYPE 46 56 26 37
'MMP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2282.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MMP11 MUTATED 1 2 0 1
MMP11 WILD-TYPE 26 56 35 48
'MMP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.78

Table S2283.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MMP11 MUTATED 6 1 0
MMP11 WILD-TYPE 97 85 101

Figure S114.  Get High-res Image Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MMP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S2284.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MMP11 MUTATED 4 2 0 1
MMP11 WILD-TYPE 79 79 78 47
'MMP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S2285.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MMP11 MUTATED 2 2 0 3 0
MMP11 WILD-TYPE 39 77 68 83 6
'MMP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2286.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MMP11 MUTATED 2 3 0 2
MMP11 WILD-TYPE 77 107 55 34
'MMP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S2287.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MMP11 MUTATED 3 1 2
MMP11 WILD-TYPE 72 85 106
'MMP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S2288.  Gene #231: 'MMP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MMP11 MUTATED 3 2 1
MMP11 WILD-TYPE 130 106 27
'EDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2289.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EDN1 MUTATED 2 4 3
EDN1 WILD-TYPE 74 105 102
'EDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2290.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EDN1 MUTATED 3 4 2
EDN1 WILD-TYPE 95 112 74
'EDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S2291.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
EDN1 MUTATED 1 3 1 0
EDN1 WILD-TYPE 46 55 25 38
'EDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S2292.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EDN1 MUTATED 0 2 1 2
EDN1 WILD-TYPE 27 56 34 47
'EDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S2293.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EDN1 MUTATED 3 4 2
EDN1 WILD-TYPE 100 82 99
'EDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S2294.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EDN1 MUTATED 3 4 2 0
EDN1 WILD-TYPE 80 77 76 48
'EDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S2295.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
EDN1 MUTATED 1 2 4 2 0
EDN1 WILD-TYPE 40 77 64 84 6
'EDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S2296.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
EDN1 MUTATED 2 3 4 0
EDN1 WILD-TYPE 77 107 51 36
'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S2297.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
EDN1 MUTATED 5 1 3
EDN1 WILD-TYPE 70 85 105
'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S2298.  Gene #232: 'EDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
EDN1 MUTATED 4 5 0
EDN1 WILD-TYPE 129 103 28
'WNT8A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2299.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
WNT8A MUTATED 2 3 2
WNT8A WILD-TYPE 74 106 103
'WNT8A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S2300.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
WNT8A MUTATED 3 1 3
WNT8A WILD-TYPE 95 115 73
'WNT8A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2301.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
WNT8A MUTATED 1 3 0 2
WNT8A WILD-TYPE 46 55 26 36
'WNT8A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S2302.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
WNT8A MUTATED 0 3 0 3
WNT8A WILD-TYPE 27 55 35 46
'WNT8A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S2303.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
WNT8A MUTATED 3 1 3
WNT8A WILD-TYPE 100 85 98
'WNT8A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2304.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
WNT8A MUTATED 3 0 2 2
WNT8A WILD-TYPE 80 81 76 46
'WNT8A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S2305.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
WNT8A MUTATED 1 4 2 0 0
WNT8A WILD-TYPE 40 75 66 86 6
'WNT8A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2306.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
WNT8A MUTATED 2 4 1 0
WNT8A WILD-TYPE 77 106 54 36
'WNT8A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2307.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
WNT8A MUTATED 1 3 3
WNT8A WILD-TYPE 74 83 105
'WNT8A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2308.  Gene #233: 'WNT8A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
WNT8A MUTATED 4 3 0
WNT8A WILD-TYPE 129 105 28
'MYF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S2309.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYF5 MUTATED 3 7 4
MYF5 WILD-TYPE 73 102 101
'MYF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S2310.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYF5 MUTATED 5 8 1
MYF5 WILD-TYPE 93 108 75
'MYF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S2311.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MYF5 MUTATED 3 3 2 1
MYF5 WILD-TYPE 44 55 24 37
'MYF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S2312.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYF5 MUTATED 2 2 3 2
MYF5 WILD-TYPE 25 56 32 47
'MYF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S2313.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYF5 MUTATED 6 6 2
MYF5 WILD-TYPE 97 80 99
'MYF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S2314.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYF5 MUTATED 6 4 1 3
MYF5 WILD-TYPE 77 77 77 45
'MYF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S2315.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MYF5 MUTATED 0 4 5 4 0
MYF5 WILD-TYPE 41 75 63 82 6
'MYF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S2316.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MYF5 MUTATED 3 8 2 0
MYF5 WILD-TYPE 76 102 53 36
'MYF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S2317.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MYF5 MUTATED 4 2 7
MYF5 WILD-TYPE 71 84 101
'MYF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2318.  Gene #234: 'MYF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MYF5 MUTATED 8 5 0
MYF5 WILD-TYPE 125 103 28
'PLOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.95

Table S2319.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PLOD1 MUTATED 4 2 0
PLOD1 WILD-TYPE 72 107 105

Figure S115.  Get High-res Image Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S2320.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PLOD1 MUTATED 1 3 2
PLOD1 WILD-TYPE 97 113 74
'PLOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2321.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PLOD1 MUTATED 2 2 0 2
PLOD1 WILD-TYPE 45 56 26 36
'PLOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S2322.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PLOD1 MUTATED 1 1 1 3
PLOD1 WILD-TYPE 26 57 34 46
'PLOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S2323.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PLOD1 MUTATED 2 1 3
PLOD1 WILD-TYPE 101 85 98
'PLOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S2324.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PLOD1 MUTATED 2 1 2 1
PLOD1 WILD-TYPE 81 80 76 47
'PLOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S2325.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PLOD1 MUTATED 1 2 2 1 0
PLOD1 WILD-TYPE 40 77 66 85 6
'PLOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 1

Table S2326.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PLOD1 MUTATED 4 0 1 1
PLOD1 WILD-TYPE 75 110 54 35
'PLOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S2327.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PLOD1 MUTATED 1 1 4
PLOD1 WILD-TYPE 74 85 104
'PLOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2328.  Gene #235: 'PLOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PLOD1 MUTATED 3 3 0
PLOD1 WILD-TYPE 130 105 28
'UGT1A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S2329.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UGT1A10 MUTATED 4 7 5
UGT1A10 WILD-TYPE 72 102 100
'UGT1A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2330.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UGT1A10 MUTATED 6 7 3
UGT1A10 WILD-TYPE 92 109 73
'UGT1A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S2331.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
UGT1A10 MUTATED 2 5 2 1
UGT1A10 WILD-TYPE 45 53 24 37
'UGT1A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S2332.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
UGT1A10 MUTATED 1 3 3 3
UGT1A10 WILD-TYPE 26 55 32 46
'UGT1A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2333.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UGT1A10 MUTATED 6 5 5
UGT1A10 WILD-TYPE 97 81 96
'UGT1A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S2334.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UGT1A10 MUTATED 5 3 5 3
UGT1A10 WILD-TYPE 78 78 73 45
'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 1

Table S2335.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
UGT1A10 MUTATED 0 3 9 4 0
UGT1A10 WILD-TYPE 41 76 59 82 6
'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 1

Table S2336.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
UGT1A10 MUTATED 2 8 6 0
UGT1A10 WILD-TYPE 77 102 49 36
'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S2337.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
UGT1A10 MUTATED 5 2 9
UGT1A10 WILD-TYPE 70 84 99
'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S2338.  Gene #236: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
UGT1A10 MUTATED 9 7 0
UGT1A10 WILD-TYPE 124 101 28
'WDR86 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S2339.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
WDR86 MUTATED 3 2 2
WDR86 WILD-TYPE 73 107 103
'WDR86 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S2340.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
WDR86 MUTATED 4 2 1
WDR86 WILD-TYPE 94 114 75
'WDR86 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S2341.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
WDR86 MUTATED 1 1 1 1
WDR86 WILD-TYPE 46 57 25 37
'WDR86 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2342.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
WDR86 MUTATED 1 2 0 1
WDR86 WILD-TYPE 26 56 35 48
'WDR86 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2343.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
WDR86 MUTATED 3 2 2
WDR86 WILD-TYPE 100 84 99
'WDR86 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S2344.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
WDR86 MUTATED 3 1 2 1
WDR86 WILD-TYPE 80 80 76 47
'WDR86 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2345.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
WDR86 MUTATED 0 2 3 1 0
WDR86 WILD-TYPE 41 77 65 85 6
'WDR86 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S2346.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
WDR86 MUTATED 1 2 3 0
WDR86 WILD-TYPE 78 108 52 36
'WDR86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S2347.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
WDR86 MUTATED 3 1 2
WDR86 WILD-TYPE 72 85 106
'WDR86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S2348.  Gene #237: 'WDR86 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
WDR86 MUTATED 4 2 0
WDR86 WILD-TYPE 129 106 28
'GLB1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.95

Table S2349.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GLB1L MUTATED 0 4 0
GLB1L WILD-TYPE 76 105 105

Figure S116.  Get High-res Image Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLB1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2350.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GLB1L MUTATED 2 2 0
GLB1L WILD-TYPE 96 114 76
'GLB1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S2351.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GLB1L MUTATED 2 2 0
GLB1L WILD-TYPE 101 84 101
'GLB1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S2352.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GLB1L MUTATED 2 2 0 0
GLB1L WILD-TYPE 81 79 78 48
'GLB1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S2353.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GLB1L MUTATED 0 2 1 0 0
GLB1L WILD-TYPE 41 77 67 86 6
'GLB1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S2354.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GLB1L MUTATED 0 2 1 0
GLB1L WILD-TYPE 79 108 54 36
'GLB1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S2355.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GLB1L MUTATED 2 1 0
GLB1L WILD-TYPE 73 85 108
'GLB1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S2356.  Gene #238: 'GLB1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GLB1L MUTATED 1 2 0
GLB1L WILD-TYPE 132 106 28
'TP63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S2357.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TP63 MUTATED 14 18 18
TP63 WILD-TYPE 62 91 87
'TP63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S2358.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TP63 MUTATED 24 16 10
TP63 WILD-TYPE 74 100 66
'TP63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.94

Table S2359.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TP63 MUTATED 11 6 1 10
TP63 WILD-TYPE 36 52 25 28

Figure S117.  Get High-res Image Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2360.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TP63 MUTATED 6 10 7 5
TP63 WILD-TYPE 21 48 28 44
'TP63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S2361.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TP63 MUTATED 24 13 13
TP63 WILD-TYPE 79 73 88
'TP63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S2362.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TP63 MUTATED 15 11 13 11
TP63 WILD-TYPE 68 70 65 37
'TP63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S2363.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TP63 MUTATED 8 10 10 17 1
TP63 WILD-TYPE 33 69 58 69 5
'TP63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S2364.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TP63 MUTATED 12 20 10 4
TP63 WILD-TYPE 67 90 45 32
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S2365.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TP63 MUTATED 11 11 22
TP63 WILD-TYPE 64 75 86
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2366.  Gene #239: 'TP63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TP63 MUTATED 27 13 4
TP63 WILD-TYPE 106 95 24
'TLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S2367.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TLL1 MUTATED 11 28 19
TLL1 WILD-TYPE 65 81 86
'TLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.55

Table S2368.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TLL1 MUTATED 25 27 6
TLL1 WILD-TYPE 73 89 70

Figure S118.  Get High-res Image Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S2369.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
TLL1 MUTATED 12 10 4 7
TLL1 WILD-TYPE 35 48 22 31
'TLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2370.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TLL1 MUTATED 8 10 6 9
TLL1 WILD-TYPE 19 48 29 40
'TLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.56

Table S2371.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TLL1 MUTATED 18 27 13
TLL1 WILD-TYPE 85 59 88

Figure S119.  Get High-res Image Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S2372.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TLL1 MUTATED 14 14 15 15
TLL1 WILD-TYPE 69 67 63 33
'TLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2373.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
TLL1 MUTATED 12 16 10 16 0
TLL1 WILD-TYPE 29 63 58 70 6
'TLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S2374.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
TLL1 MUTATED 13 23 10 8
TLL1 WILD-TYPE 66 87 45 28
'TLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S2375.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
TLL1 MUTATED 13 15 24
TLL1 WILD-TYPE 62 71 84
'TLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2376.  Gene #240: 'TLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
TLL1 MUTATED 27 19 6
TLL1 WILD-TYPE 106 89 22
'SOCS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S2377.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SOCS5 MUTATED 3 4 1
SOCS5 WILD-TYPE 73 105 104
'SOCS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S2378.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SOCS5 MUTATED 1 5 2
SOCS5 WILD-TYPE 97 111 74
'SOCS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2379.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SOCS5 MUTATED 0 2 0 1
SOCS5 WILD-TYPE 47 56 26 37
'SOCS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2380.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SOCS5 MUTATED 0 1 1 1
SOCS5 WILD-TYPE 27 57 34 48
'SOCS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2381.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SOCS5 MUTATED 4 2 2
SOCS5 WILD-TYPE 99 84 99
'SOCS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S2382.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SOCS5 MUTATED 3 2 1 2
SOCS5 WILD-TYPE 80 79 77 46
'SOCS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2383.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SOCS5 MUTATED 0 1 2 4 0
SOCS5 WILD-TYPE 41 78 66 82 6
'SOCS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2384.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SOCS5 MUTATED 4 2 1 0
SOCS5 WILD-TYPE 75 108 54 36
'SOCS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S2385.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SOCS5 MUTATED 2 1 3
SOCS5 WILD-TYPE 73 85 105
'SOCS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2386.  Gene #241: 'SOCS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SOCS5 MUTATED 4 2 0
SOCS5 WILD-TYPE 129 106 28
'VGLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S2387.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
VGLL1 MUTATED 1 4 1
VGLL1 WILD-TYPE 75 105 104
'VGLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S2388.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
VGLL1 MUTATED 1 3 2
VGLL1 WILD-TYPE 97 113 74
'VGLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2389.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
VGLL1 MUTATED 1 2 0 1
VGLL1 WILD-TYPE 46 56 26 37
'VGLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S2390.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
VGLL1 MUTATED 1 2 0 1
VGLL1 WILD-TYPE 26 56 35 48
'VGLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S2391.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
VGLL1 MUTATED 1 2 3
VGLL1 WILD-TYPE 102 84 98
'VGLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S2392.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
VGLL1 MUTATED 1 3 2 0
VGLL1 WILD-TYPE 82 78 76 48
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S2393.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
VGLL1 MUTATED 0 3 2 0 0
VGLL1 WILD-TYPE 41 76 66 86 6
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2394.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
VGLL1 MUTATED 1 2 2 0
VGLL1 WILD-TYPE 78 108 53 36
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2395.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
VGLL1 MUTATED 2 2 1
VGLL1 WILD-TYPE 73 84 107
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S2396.  Gene #242: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
VGLL1 MUTATED 1 4 0
VGLL1 WILD-TYPE 132 104 28
'DMGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 1

Table S2397.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DMGDH MUTATED 1 10 4
DMGDH WILD-TYPE 75 99 101

Figure S120.  Get High-res Image Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DMGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S2398.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DMGDH MUTATED 6 8 1
DMGDH WILD-TYPE 92 108 75
'DMGDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00434 (Fisher's exact test), Q value = 0.55

Table S2399.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DMGDH MUTATED 6 0 0 1
DMGDH WILD-TYPE 41 58 26 37

Figure S121.  Get High-res Image Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DMGDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.94

Table S2400.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DMGDH MUTATED 4 1 0 2
DMGDH WILD-TYPE 23 57 35 47

Figure S122.  Get High-res Image Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DMGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2401.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DMGDH MUTATED 7 5 3
DMGDH WILD-TYPE 96 81 98
'DMGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S2402.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DMGDH MUTATED 5 5 2 3
DMGDH WILD-TYPE 78 76 76 45
'DMGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S2403.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DMGDH MUTATED 3 4 5 3 0
DMGDH WILD-TYPE 38 75 63 83 6
'DMGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S2404.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DMGDH MUTATED 4 6 2 3
DMGDH WILD-TYPE 75 104 53 33
'DMGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S2405.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DMGDH MUTATED 6 4 3
DMGDH WILD-TYPE 69 82 105
'DMGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S2406.  Gene #243: 'DMGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DMGDH MUTATED 7 6 0
DMGDH WILD-TYPE 126 102 28
'EEF1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S2407.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EEF1A1 MUTATED 0 5 2
EEF1A1 WILD-TYPE 76 104 103
'EEF1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2408.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EEF1A1 MUTATED 4 3 0
EEF1A1 WILD-TYPE 94 113 76
'EEF1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S2409.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
EEF1A1 MUTATED 0 1 1 2
EEF1A1 WILD-TYPE 47 57 25 36
'EEF1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S2410.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EEF1A1 MUTATED 0 1 1 2
EEF1A1 WILD-TYPE 27 57 34 47
'EEF1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S2411.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EEF1A1 MUTATED 2 2 3
EEF1A1 WILD-TYPE 101 84 98
'EEF1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2412.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EEF1A1 MUTATED 2 2 2 1
EEF1A1 WILD-TYPE 81 79 76 47
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S2413.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
EEF1A1 MUTATED 1 0 4 2 0
EEF1A1 WILD-TYPE 40 79 64 84 6
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2414.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
EEF1A1 MUTATED 2 3 1 1
EEF1A1 WILD-TYPE 77 107 54 35
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S2415.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
EEF1A1 MUTATED 4 1 2
EEF1A1 WILD-TYPE 71 85 106
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S2416.  Gene #244: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
EEF1A1 MUTATED 6 1 0
EEF1A1 WILD-TYPE 127 107 28
'PDLIM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S2417.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PDLIM5 MUTATED 2 6 2
PDLIM5 WILD-TYPE 74 103 103
'PDLIM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S2418.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PDLIM5 MUTATED 4 4 2
PDLIM5 WILD-TYPE 94 112 74
'PDLIM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S2419.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PDLIM5 MUTATED 2 2 0 1
PDLIM5 WILD-TYPE 45 56 26 37
'PDLIM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S2420.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PDLIM5 MUTATED 1 3 0 1
PDLIM5 WILD-TYPE 26 55 35 48
'PDLIM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S2421.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PDLIM5 MUTATED 3 4 3
PDLIM5 WILD-TYPE 100 82 98
'PDLIM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S2422.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PDLIM5 MUTATED 1 3 3 3
PDLIM5 WILD-TYPE 82 78 75 45
'PDLIM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S2423.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PDLIM5 MUTATED 1 4 3 1 0
PDLIM5 WILD-TYPE 40 75 65 85 6
'PDLIM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S2424.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PDLIM5 MUTATED 1 4 4 0
PDLIM5 WILD-TYPE 78 106 51 36
'PDLIM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S2425.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PDLIM5 MUTATED 3 4 2
PDLIM5 WILD-TYPE 72 82 106
'PDLIM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S2426.  Gene #245: 'PDLIM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PDLIM5 MUTATED 3 6 0
PDLIM5 WILD-TYPE 130 102 28
'RNF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S2427.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RNF40 MUTATED 4 1 2
RNF40 WILD-TYPE 72 108 103
'RNF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S2428.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RNF40 MUTATED 3 2 2
RNF40 WILD-TYPE 95 114 74
'RNF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2429.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
RNF40 MUTATED 2 0 1 1
RNF40 WILD-TYPE 45 58 25 37
'RNF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S2430.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RNF40 MUTATED 1 0 1 2
RNF40 WILD-TYPE 26 58 34 47
'RNF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2431.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RNF40 MUTATED 3 1 3
RNF40 WILD-TYPE 100 85 98
'RNF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2432.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RNF40 MUTATED 2 3 1 1
RNF40 WILD-TYPE 81 78 77 47
'RNF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S2433.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
RNF40 MUTATED 1 3 2 1 0
RNF40 WILD-TYPE 40 76 66 85 6
'RNF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2434.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
RNF40 MUTATED 2 3 1 1
RNF40 WILD-TYPE 77 107 54 35
'RNF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S2435.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
RNF40 MUTATED 0 3 4
RNF40 WILD-TYPE 75 83 104
'RNF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2436.  Gene #246: 'RNF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
RNF40 MUTATED 3 3 1
RNF40 WILD-TYPE 130 105 27
'SAMHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S2437.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SAMHD1 MUTATED 4 7 3
SAMHD1 WILD-TYPE 72 102 102
'SAMHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S2438.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SAMHD1 MUTATED 6 7 1
SAMHD1 WILD-TYPE 92 109 75
'SAMHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2439.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SAMHD1 MUTATED 2 2 1 1
SAMHD1 WILD-TYPE 45 56 25 37
'SAMHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S2440.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SAMHD1 MUTATED 1 3 0 2
SAMHD1 WILD-TYPE 26 55 35 47
'SAMHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.94

Table S2441.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SAMHD1 MUTATED 5 8 1
SAMHD1 WILD-TYPE 98 78 100

Figure S123.  Get High-res Image Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SAMHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S2442.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SAMHD1 MUTATED 3 7 1 3
SAMHD1 WILD-TYPE 80 74 77 45
'SAMHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2443.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SAMHD1 MUTATED 3 3 3 4 0
SAMHD1 WILD-TYPE 38 76 65 82 6
'SAMHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2444.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SAMHD1 MUTATED 4 5 1 3
SAMHD1 WILD-TYPE 75 105 54 33
'SAMHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S2445.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SAMHD1 MUTATED 7 2 4
SAMHD1 WILD-TYPE 68 84 104
'SAMHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S2446.  Gene #247: 'SAMHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SAMHD1 MUTATED 8 3 2
SAMHD1 WILD-TYPE 125 105 26
'PAPPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 1

Table S2447.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PAPPA2 MUTATED 28 29 23
PAPPA2 WILD-TYPE 48 80 82
'PAPPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 1

Table S2448.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PAPPA2 MUTATED 34 32 14
PAPPA2 WILD-TYPE 64 84 62
'PAPPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S2449.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
PAPPA2 MUTATED 15 21 6 7
PAPPA2 WILD-TYPE 32 37 20 31
'PAPPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S2450.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PAPPA2 MUTATED 8 22 8 11
PAPPA2 WILD-TYPE 19 36 27 38
'PAPPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 1

Table S2451.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PAPPA2 MUTATED 26 32 22
PAPPA2 WILD-TYPE 77 54 79
'PAPPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2452.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PAPPA2 MUTATED 20 24 21 15
PAPPA2 WILD-TYPE 63 57 57 33
'PAPPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S2453.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
PAPPA2 MUTATED 16 19 16 25 1
PAPPA2 WILD-TYPE 25 60 52 61 5
'PAPPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S2454.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
PAPPA2 MUTATED 17 33 13 14
PAPPA2 WILD-TYPE 62 77 42 22
'PAPPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S2455.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
PAPPA2 MUTATED 17 21 37
PAPPA2 WILD-TYPE 58 65 71
'PAPPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S2456.  Gene #248: 'PAPPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
PAPPA2 MUTATED 38 25 12
PAPPA2 WILD-TYPE 95 83 16
'GSTM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S2457.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GSTM5 MUTATED 2 4 1
GSTM5 WILD-TYPE 74 105 104
'GSTM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2458.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GSTM5 MUTATED 3 2 2
GSTM5 WILD-TYPE 95 114 74
'GSTM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S2459.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
GSTM5 MUTATED 0 2 0 2
GSTM5 WILD-TYPE 47 56 26 36
'GSTM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2460.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GSTM5 MUTATED 0 2 1 1
GSTM5 WILD-TYPE 27 56 34 48
'GSTM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S2461.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GSTM5 MUTATED 1 2 4
GSTM5 WILD-TYPE 102 84 97
'GSTM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2462.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GSTM5 MUTATED 2 3 1 1
GSTM5 WILD-TYPE 81 78 77 47
'GSTM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S2463.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
GSTM5 MUTATED 1 4 1 1 0
GSTM5 WILD-TYPE 40 75 67 85 6
'GSTM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S2464.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
GSTM5 MUTATED 3 3 0 1
GSTM5 WILD-TYPE 76 107 55 35
'GSTM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2465.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
GSTM5 MUTATED 1 3 3
GSTM5 WILD-TYPE 74 83 105
'GSTM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S2466.  Gene #249: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
GSTM5 MUTATED 2 4 1
GSTM5 WILD-TYPE 131 104 27
'DNAJC5G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S2467.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DNAJC5G MUTATED 1 4 2
DNAJC5G WILD-TYPE 75 105 103
'DNAJC5G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S2468.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DNAJC5G MUTATED 3 2 2
DNAJC5G WILD-TYPE 95 114 74
'DNAJC5G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2469.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
DNAJC5G MUTATED 1 3 0 2
DNAJC5G WILD-TYPE 46 55 26 36
'DNAJC5G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S2470.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DNAJC5G MUTATED 1 1 1 3
DNAJC5G WILD-TYPE 26 57 34 46
'DNAJC5G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2471.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DNAJC5G MUTATED 2 3 2
DNAJC5G WILD-TYPE 101 83 99
'DNAJC5G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S2472.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DNAJC5G MUTATED 2 1 2 2
DNAJC5G WILD-TYPE 81 80 76 46
'DNAJC5G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S2473.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
DNAJC5G MUTATED 1 1 2 3 0
DNAJC5G WILD-TYPE 40 78 66 83 6
'DNAJC5G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S2474.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
DNAJC5G MUTATED 3 2 1 1
DNAJC5G WILD-TYPE 76 108 54 35
'DNAJC5G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2475.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
DNAJC5G MUTATED 1 2 4
DNAJC5G WILD-TYPE 74 84 104
'DNAJC5G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S2476.  Gene #250: 'DNAJC5G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
DNAJC5G MUTATED 5 1 1
DNAJC5G WILD-TYPE 128 107 27
'CHD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S2477.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CHD2 MUTATED 3 7 9
CHD2 WILD-TYPE 73 102 96
'CHD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2478.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CHD2 MUTATED 6 8 5
CHD2 WILD-TYPE 92 108 71
'CHD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S2479.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
CHD2 MUTATED 4 4 3 3
CHD2 WILD-TYPE 43 54 23 35
'CHD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S2480.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CHD2 MUTATED 3 4 4 3
CHD2 WILD-TYPE 24 54 31 46
'CHD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S2481.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CHD2 MUTATED 6 5 8
CHD2 WILD-TYPE 97 81 93
'CHD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S2482.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CHD2 MUTATED 6 5 6 2
CHD2 WILD-TYPE 77 76 72 46
'CHD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2483.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
CHD2 MUTATED 4 4 6 4 0
CHD2 WILD-TYPE 37 75 62 82 6
'CHD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 1

Table S2484.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
CHD2 MUTATED 8 3 3 4
CHD2 WILD-TYPE 71 107 52 32
'CHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S2485.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
CHD2 MUTATED 6 4 8
CHD2 WILD-TYPE 69 82 100
'CHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2486.  Gene #251: 'CHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
CHD2 MUTATED 9 7 2
CHD2 WILD-TYPE 124 101 26
'VPS33A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S2487.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
VPS33A MUTATED 2 2 6
VPS33A WILD-TYPE 74 107 99
'VPS33A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S2488.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
VPS33A MUTATED 5 3 2
VPS33A WILD-TYPE 93 113 74
'VPS33A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.35

Table S2489.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
VPS33A MUTATED 0 0 1 5
VPS33A WILD-TYPE 47 58 25 33

Figure S124.  Get High-res Image Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'VPS33A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S2490.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
VPS33A MUTATED 0 1 3 2
VPS33A WILD-TYPE 27 57 32 47
'VPS33A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2491.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
VPS33A MUTATED 4 3 3
VPS33A WILD-TYPE 99 83 98
'VPS33A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2492.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
VPS33A MUTATED 3 4 2 1
VPS33A WILD-TYPE 80 77 76 47
'VPS33A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S2493.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
VPS33A MUTATED 1 2 2 5 0
VPS33A WILD-TYPE 40 77 66 81 6
'VPS33A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S2494.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
VPS33A MUTATED 3 5 2 0
VPS33A WILD-TYPE 76 105 53 36
'VPS33A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S2495.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
VPS33A MUTATED 0 2 7
VPS33A WILD-TYPE 75 84 101
'VPS33A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S2496.  Gene #252: 'VPS33A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
VPS33A MUTATED 7 2 0
VPS33A WILD-TYPE 126 106 28
'VSX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S2497.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
VSX1 MUTATED 0 2 3
VSX1 WILD-TYPE 76 107 102
'VSX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 1

Table S2498.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
VSX1 MUTATED 2 0 3
VSX1 WILD-TYPE 96 116 73
'VSX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2499.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
VSX1 MUTATED 0 2 0 1
VSX1 WILD-TYPE 47 56 26 37
'VSX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S2500.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
VSX1 MUTATED 0 1 2 0
VSX1 WILD-TYPE 27 57 33 49
'VSX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2501.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
VSX1 MUTATED 2 1 2
VSX1 WILD-TYPE 101 85 99
'VSX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S2502.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
VSX1 MUTATED 2 1 2 0
VSX1 WILD-TYPE 81 80 76 48
'VSX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S2503.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
VSX1 MUTATED 0 1 2 2 0
VSX1 WILD-TYPE 41 78 66 84 6
'VSX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2504.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
VSX1 MUTATED 2 1 2 0
VSX1 WILD-TYPE 77 109 53 36
'VSX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2505.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
VSX1 MUTATED 1 1 3
VSX1 WILD-TYPE 74 85 105
'VSX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2506.  Gene #253: 'VSX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
VSX1 MUTATED 3 2 0
VSX1 WILD-TYPE 130 106 28
'SPAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S2507.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SPAG1 MUTATED 3 5 3
SPAG1 WILD-TYPE 73 104 102
'SPAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S2508.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SPAG1 MUTATED 5 5 1
SPAG1 WILD-TYPE 93 111 75
'SPAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.94

Table S2509.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
SPAG1 MUTATED 3 0 0 4
SPAG1 WILD-TYPE 44 58 26 34

Figure S125.  Get High-res Image Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SPAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2510.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SPAG1 MUTATED 1 3 1 2
SPAG1 WILD-TYPE 26 55 34 47
'SPAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S2511.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SPAG1 MUTATED 5 5 1
SPAG1 WILD-TYPE 98 81 100
'SPAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S2512.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SPAG1 MUTATED 4 4 0 3
SPAG1 WILD-TYPE 79 77 78 45
'SPAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S2513.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
SPAG1 MUTATED 2 2 5 2 0
SPAG1 WILD-TYPE 39 77 63 84 6
'SPAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S2514.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
SPAG1 MUTATED 3 7 0 1
SPAG1 WILD-TYPE 76 103 55 35
'SPAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S2515.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
SPAG1 MUTATED 4 1 5
SPAG1 WILD-TYPE 71 85 103
'SPAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2516.  Gene #254: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
SPAG1 MUTATED 7 3 0
SPAG1 WILD-TYPE 126 105 28
'MIA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S2517.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MIA2 MUTATED 1 1 3
MIA2 WILD-TYPE 75 108 102
'MIA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2518.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MIA2 MUTATED 2 2 1
MIA2 WILD-TYPE 96 114 75
'MIA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S2519.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 58 26 38
MIA2 MUTATED 0 1 1 1
MIA2 WILD-TYPE 47 57 25 37
'MIA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S2520.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MIA2 MUTATED 0 2 1 0
MIA2 WILD-TYPE 27 56 34 49
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2521.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MIA2 MUTATED 2 1 2
MIA2 WILD-TYPE 101 85 99
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S2522.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MIA2 MUTATED 1 0 2 2
MIA2 WILD-TYPE 82 81 76 46
'MIA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S2523.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 41 79 68 86 6
MIA2 MUTATED 1 3 0 1 0
MIA2 WILD-TYPE 40 76 68 85 6
'MIA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S2524.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 79 110 55 36
MIA2 MUTATED 1 2 2 0
MIA2 WILD-TYPE 78 108 53 36
'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2525.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 86 108
MIA2 MUTATED 1 2 2
MIA2 WILD-TYPE 74 84 106
'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S2526.  Gene #255: 'MIA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 133 108 28
MIA2 MUTATED 2 3 0
MIA2 WILD-TYPE 131 105 28
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/15234030/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/15111349/SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 290

  • Number of significantly mutated genes = 255

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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