Correlation between gene mutation status and molecular subtypes
Stomach and Esophageal carcinoma (Primary solid tumor)
02 April 2015  |  analyses__2015_04_02
Maintainer Information
Citation Information
doi:10.7908/C1JQ1030
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1JQ1030
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 739 genes and 8 molecular subtypes across 289 patients, 1379 significant findings detected with P value < 0.05 and Q value < 0.25.

  • TP53 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RNF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LARP4B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • XYLT2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • B2M mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BZRAP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KRAS mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MLL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GNG12 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LMAN1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CDH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PLEKHA6 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMAD4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MTG1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • KLF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CTCF mutation correlated to 'CN_CNMF'.

  • ZBTB20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATP6V1B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTEN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HLA-A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FBXW7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MVK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FRMD4A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MBD6 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZBTB7C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • JARID2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PAX6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3CA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • APC mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NLK mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • POLM mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • WBP1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KIAA0182 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SNAPC2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C1QTNF5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • AOC3 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CIC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HLA-B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CD4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZMYM4 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • ZNF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GBP7 mutation correlated to 'CN_CNMF'.

  • BCL9L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TBX4 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • C7ORF50 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DDC mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ADAM28 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IWS1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MUC6 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GXYLT1 mutation correlated to 'CN_CNMF'.

  • HLA-C mutation correlated to 'CN_CNMF'.

  • PRSS36 mutation correlated to 'CN_CNMF'.

  • ZFHX4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C6ORF89 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PAFAH1B1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DDX6 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • C9ORF131 mutation correlated to 'CN_CNMF'.

  • ZNF878 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SPG20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C14ORF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FLNB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GLI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • WNT16 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IRF2 mutation correlated to 'CN_CNMF'.

  • SPTY2D1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • GPSM3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • STAT2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PRRG3 mutation correlated to 'CN_CNMF'.

  • TP53BP2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • BCOR mutation correlated to 'CN_CNMF'.

  • BCORL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RALGAPB mutation correlated to 'CN_CNMF'.

  • ATP2A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC88A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BTBD7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZC3H18 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC10A6 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CR2 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARHGAP5 mutation correlated to 'CN_CNMF'.

  • RASA1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF48 mutation correlated to 'CN_CNMF'.

  • SETDB2 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • INPPL1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTNND1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TFE3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SOX7 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LEMD1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ARID1B mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PGM5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FHOD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CABP5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TTF1 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PHACTR4 mutation correlated to 'METHLYATION_CNMF'.

  • RBM43 mutation correlated to 'MRNASEQ_CNMF'.

  • CDC25C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GPR161 mutation correlated to 'CN_CNMF'.

  • SVIL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FILIP1L mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CTSC mutation correlated to 'CN_CNMF'.

  • PAMR1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • USP21 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZFHX3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EPHA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PREPL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RGL2 mutation correlated to 'CN_CNMF'.

  • ATP6V1C2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CDC14A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DDX17 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABCC4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZFC3H1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ZKSCAN5 mutation correlated to 'CN_CNMF'.

  • RABGAP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RNF145 mutation correlated to 'CN_CNMF'.

  • SNAPC1 mutation correlated to 'METHLYATION_CNMF'.

  • PLEKHA5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FASTKD1 mutation correlated to 'CN_CNMF'.

  • SLC27A3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • INF2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C13ORF33 mutation correlated to 'METHLYATION_CNMF'.

  • AKAP13 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DYRK4 mutation correlated to 'METHLYATION_CNMF'.

  • FOXN3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TNFRSF9 mutation correlated to 'CN_CNMF'.

  • RHOQ mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PRPF40B mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • STAT5B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CFI mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FERMT2 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ALDH3A1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GCC2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • NOX5 mutation correlated to 'CN_CNMF'.

  • KIF13A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SCLT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • STAB1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TP53BP1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • IFRD1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SF3B2 mutation correlated to 'CN_CNMF'.

  • FAM151A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FHDC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TLE2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DDX60 mutation correlated to 'CN_CNMF'.

  • BEND3 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • EIF4G3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MFRP mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EIF5B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ISG20L2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CDKN2A mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RTN2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DNAJC1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • CCDC108 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PYGO2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MSH6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RNF111 mutation correlated to 'CN_CNMF'.

  • ABCA6 mutation correlated to 'CN_CNMF'.

  • WDR7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZC3H13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IGFBP7 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • HNF1B mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM113B mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • RRS1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • WNK4 mutation correlated to 'CN_CNMF'.

  • RAD51AP2 mutation correlated to 'MIRSEQ_CNMF'.

  • PIGB mutation correlated to 'CN_CNMF'.

  • OGDH mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • GPR82 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ELF3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • EPHX1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CNBD1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SLC26A7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RCOR3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ACVR1B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • VPS13A mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZCCHC6 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ITPR2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLL3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PODN mutation correlated to 'CN_CNMF'.

  • AKNAD1 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ERBB3 mutation correlated to 'CN_CNMF'.

  • RSF1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KBTBD10 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OSBP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EBF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LRP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ABCB6 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • DNAJC18 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • IDH2 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DLGAP3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • KIAA0240 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATXN2L mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF608 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA0406 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1967 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PLAU mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ALG10 mutation correlated to 'CN_CNMF'.

  • FZD3 mutation correlated to 'MIRSEQ_CNMF'.

  • PSME4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZDHHC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PANK1 mutation correlated to 'CN_CNMF'.

  • C11ORF9 mutation correlated to 'CN_CNMF'.

  • KIAA0195 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TRIP10 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • FAM193A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • AXIN2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C12ORF51 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • PHACTR2 mutation correlated to 'METHLYATION_CNMF'.

  • ADNP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • VPRBP mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ALPK2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C16ORF7 mutation correlated to 'CN_CNMF'.

  • HIVEP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SBNO1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • WASF3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF124 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • RB1CC1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • HIVEP3 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OTX2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • CRYGD mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • KIN mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SRCIN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CDH16 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GLT8D1 mutation correlated to 'CN_CNMF'.

  • POP1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PIGO mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • MTIF2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • HAUS6 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ASPN mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KLC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • PAPD4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1009 mutation correlated to 'METHLYATION_CNMF'.

  • C5ORF42 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • YBX2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SH3KBP1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PLXNA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PIK3R3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM70B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • COL12A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NFE2L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • IRS4 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • OR5M3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MYEOV mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C15ORF52 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • PKN2 mutation correlated to 'CN_CNMF'.

  • IPO11 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PGBD1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • AQP8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EXO1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PRMT8 mutation correlated to 'CN_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ANKRD40 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RBM6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC12A7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CASP8 mutation correlated to 'CN_CNMF'.

  • WHSC1L1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • NEK7 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BTBD11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXO21 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • MAMSTR mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ATM mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BRWD1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PFKP mutation correlated to 'MIRSEQ_CNMF'.

  • TMEM63A mutation correlated to 'CN_CNMF'.

  • OPLAH mutation correlated to 'CN_CNMF'.

  • MYOCD mutation correlated to 'CN_CNMF'.

  • SEC24C mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CASD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CADPS2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MASTL mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KBTBD6 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PLA2G15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • JHDM1D mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • KCNJ10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRUB1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • PLAG1 mutation correlated to 'CN_CNMF'.

  • CSF3R mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RPGR mutation correlated to 'METHLYATION_CNMF'.

  • LRFN3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GRK4 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RUSC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CHST15 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • USP8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MYB mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CD93 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • B3GNT5 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • ART1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IKBKE mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TIMM44 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ELOVL2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CROT mutation correlated to 'CN_CNMF'.

  • GON4L mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • UHRF1BP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABLIM2 mutation correlated to 'CN_CNMF'.

  • CA2 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IRS1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LMTK3 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • DNAH5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPATCH2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KCNH2 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ADAMTSL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CPB2 mutation correlated to 'CN_CNMF'.

  • THEMIS mutation correlated to 'CN_CNMF'.

  • EGR1 mutation correlated to 'CN_CNMF'.

  • GTF3C4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ACTL6A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C7ORF49 mutation correlated to 'METHLYATION_CNMF'.

  • ZNF711 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • HCRTR2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • C2ORF42 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SEZ6 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • C7ORF58 mutation correlated to 'METHLYATION_CNMF'.

  • PTPN4 mutation correlated to 'CN_CNMF'.

  • CTSD mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • EOMES mutation correlated to 'CN_CNMF'.

  • AVPR1A mutation correlated to 'CN_CNMF'.

  • OR4K5 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPR124 mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF701 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • MPRIP mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SYNJ2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1324L mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LIAS mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MAP7D3 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FYB mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SAP130 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SMARCB1 mutation correlated to 'CN_CNMF'.

  • EPHA5 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WAPAL mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CEP120 mutation correlated to 'CN_CNMF'.

  • SPATA5L1 mutation correlated to 'METHLYATION_CNMF'.

  • TACC2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KCTD9 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1539 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • ZFP36L2 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TNS4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CAMTA2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RERE mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TRAM1L1 mutation correlated to 'METHLYATION_CNMF'.

  • SUCLG2 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TIGD7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ITSN2 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • OGFRL1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MAP1A mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNK2 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • EDNRB mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARHGEF17 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C10ORF120 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SLC45A4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CSNK1G3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ARFGEF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HDLBP mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SYCP2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTPRJ mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MZF1 mutation correlated to 'CN_CNMF'.

  • LUC7L3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NARG2 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • FLG mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIWIL2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TMEM79 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HIST1H1B mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • FGF13 mutation correlated to 'CN_CNMF'.

  • SLC22A16 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GLYR1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • LRRC43 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • NLRC5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EAF2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PHF20 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • UBXN6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NEK8 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • ZNF292 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NT5DC1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • DUSP9 mutation correlated to 'MIRSEQ_CNMF'.

  • ABCA5 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF334 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GPATCH4 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • TCEAL5 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • GANAB mutation correlated to 'CN_CNMF'.

  • YLPM1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PPARGC1B mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • TSPYL5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • BCKDHA mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • BRD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TNKS1BP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIRREL2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NID2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LARP1 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FAM186B mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TBC1D23 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FBN3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IK mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • GPC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NF1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LCE1A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TRIM46 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FOXJ1 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DCHS1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HLA-F mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPL mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTOV1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PCCA mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • TAF6 mutation correlated to 'MIRSEQ_CNMF'.

  • ITGA7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C11ORF63 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNC1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AMPD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TRIM27 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MMP3 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • IDE mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PLEKHH3 mutation correlated to 'CN_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WSB2 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • AKAP11 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • VASH1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • IFNA17 mutation correlated to 'METHLYATION_CNMF'.

  • SBF1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SCN9A mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MACF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DENND1C mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CNKSR1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MYCT1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ATRIP mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TIMP3 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ELK3 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TM6SF1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • DDX50 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • EPHB6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ITGAV mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SAMD9L mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SLC4A3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIK3R1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CDC5L mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • COL20A1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • AP3M2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ZBTB40 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • CORIN mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ACSS2 mutation correlated to 'CN_CNMF'.

  • CD1E mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DGKD mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MAGI2 mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FIGNL1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • DISP2 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MGA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • UNC50 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CNGA4 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • C3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GPX6 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KANK4 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ELL2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • PIK3C2G mutation correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SOS2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATL3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PEG3 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMARCAL1 mutation correlated to 'METHLYATION_CNMF'.

  • THBS1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • PUS7 mutation correlated to 'CN_CNMF'.

  • RALGDS mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CNTROB mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TCF7 mutation correlated to 'CN_CNMF'.

  • GPATCH8 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PSD mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • OSBPL2 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ROCK1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LRP12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1217 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MAN2B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA0226 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • ETV1 mutation correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NOL6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RNMT mutation correlated to 'CN_CNMF'.

  • HOOK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC25 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • IQSEC2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IBTK mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • HS6ST2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EPB41L5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARID5B mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • HECA mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RHOBTB2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EML3 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • LSS mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • SLC7A13 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • FANCA mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CLIP1 mutation correlated to 'METHLYATION_CNMF'.

  • ZNF217 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLA mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • HDAC4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • AHI1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CLSTN1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • PPM1H mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PHKG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR4C16 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NUAK1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 739 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 1379 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
RNF43 49 (17%) 240 1e-05
(0.00204) 		1e-05
(0.00204) 		0.00203
(0.041) 		1e-05
(0.00204) 		2e-05
(0.00296) 		1e-05
(0.00204) 		0.00013
(0.00894) 		0.00246
(0.0463)
JARID2 28 (10%) 261 0.00013
(0.00894) 		0.00034
(0.0144) 		0.0127
(0.112) 		1e-05
(0.00204) 		0.00106
(0.0271) 		3e-05
(0.00362) 		0.00127
(0.031) 		0.0226
(0.149)
ZFHX4 53 (18%) 236 0.00016
(0.00985) 		0.013
(0.113) 		0.0133
(0.115) 		0.00928
(0.0965) 		0.00036
(0.0149) 		1e-05
(0.00204) 		0.0492
(0.212) 		0.00067
(0.021)
BCORL1 20 (7%) 269 0.00025
(0.0126) 		0.0411
(0.193) 		0.0308
(0.171) 		0.00132
(0.032) 		0.00047
(0.017) 		0.00033
(0.0141) 		0.00022
(0.0118) 		0.00912
(0.0954)
ATP2A1 15 (5%) 274 0.00747
(0.0857) 		0.00792
(0.0874) 		0.0136
(0.115) 		0.0009
(0.0245) 		0.00402
(0.0606) 		0.00318
(0.0539) 		0.00037
(0.0152) 		0.00476
(0.067)
PGM5 25 (9%) 264 3e-05
(0.00362) 		3e-05
(0.00362) 		0.00251
(0.047) 		1e-05
(0.00204) 		0.00389
(0.0591) 		0.0001
(0.00799) 		0.0402
(0.193) 		0.00239
(0.0462)
EPHA2 23 (8%) 266 0.00283
(0.0509) 		0.0129
(0.113) 		0.0211
(0.143) 		6e-05
(0.00601) 		0.00564
(0.0734) 		0.00088
(0.0244) 		0.00603
(0.0767) 		0.0263
(0.161)
CCDC108 25 (9%) 264 0.00299
(0.0521) 		0.0083
(0.0897) 		0.0138
(0.115) 		7e-05
(0.00657) 		0.00378
(0.058) 		1e-05
(0.00204) 		0.0191
(0.135) 		0.027
(0.163)
ADNP2 18 (6%) 271 0.00637
(0.0792) 		0.00067
(0.021) 		0.00405
(0.0608) 		0.00639
(0.0792) 		0.00317
(0.0539) 		1e-05
(0.00204) 		0.00163
(0.0356) 		0.0101
(0.102)
RERE 21 (7%) 268 8e-05
(0.00717) 		0.00475
(0.067) 		0.00998
(0.102) 		0.00014
(0.0093) 		0.00024
(0.0126) 		1e-05
(0.00204) 		0.0242
(0.153) 		0.00898
(0.0946)
MACF1 45 (16%) 244 0.00825
(0.0895) 		0.0154
(0.122) 		0.0497
(0.213) 		0.00405
(0.0608) 		0.0005
(0.0176) 		0.00279
(0.0509) 		0.00137
(0.0324) 		0.00427
(0.0626)
HDAC4 22 (8%) 267 7e-05
(0.00657) 		0.00032
(0.0138) 		0.00187
(0.0387) 		3e-05
(0.00362) 		0.00243
(0.0462) 		1e-05
(0.00204) 		0.00157
(0.0349) 		0.00087
(0.0244)
ARID1A 90 (31%) 199 1e-05
(0.00204) 		0.00041
(0.0157) 		0.0651
(0.244) 		2e-05
(0.00296) 		0.00146
(0.0336) 		2e-05
(0.00296) 		0.00011
(0.00813) 		0.00527
(0.0708)
XYLT2 32 (11%) 257 2e-05
(0.00296) 		3e-05
(0.00362) 		0.202
(0.409) 		0.0005
(0.0176) 		0.0009
(0.0245) 		2e-05
(0.00296) 		0.00336
(0.056) 		0.00382
(0.0584)
MLL2 65 (22%) 224 1e-05
(0.00204) 		1e-05
(0.00204) 		0.0538
(0.225) 		7e-05
(0.00657) 		1e-05
(0.00204) 		1e-05
(0.00204) 		1e-05
(0.00204) 		1e-05
(0.00204)
ZBTB20 28 (10%) 261 1e-05
(0.00204) 		0.0033
(0.0553) 		0.137
(0.325) 		0.00013
(0.00894) 		0.00015
(0.00974) 		0.00011
(0.00813) 		0.0107
(0.104) 		0.0232
(0.15)
ATP6V1B1 20 (7%) 269 0.00056
(0.0187) 		0.00179
(0.0379) 		0.317
(0.518) 		0.0122
(0.111) 		0.00046
(0.0169) 		0.0106
(0.104) 		0.0282
(0.168) 		0.0095
(0.0982)
PTEN 23 (8%) 266 0.00019
(0.0111) 		0.00643
(0.0793) 		0.199
(0.408) 		0.0399
(0.192) 		0.0298
(0.171) 		0.00023
(0.0122) 		0.0209
(0.142) 		0.0386
(0.189)
PIK3CA 57 (20%) 232 1e-05
(0.00204) 		0.00021
(0.0117) 		0.0339
(0.177) 		5e-05
(0.00537) 		0.0547
(0.225) 		0.00011
(0.00813) 		0.00059
(0.0196) 		0.00263
(0.0487)
CIC 26 (9%) 263 0.0001
(0.00799) 		0.0339
(0.177) 		0.792
(0.891) 		0.0189
(0.134) 		0.012
(0.111) 		2e-05
(0.00296) 		0.0062
(0.0777) 		0.0243
(0.153)
FHOD3 26 (9%) 263 0.00886
(0.0939) 		0.00348
(0.0564) 		0.56
(0.702) 		0.034
(0.177) 		0.00246
(0.0463) 		0.00067
(0.021) 		0.00081
(0.0232) 		0.0158
(0.122)
CDC14A 15 (5%) 274 0.0322
(0.174) 		0.0218
(0.147) 		0.272
(0.476) 		0.0234
(0.15) 		0.00368
(0.0571) 		0.00074
(0.0222) 		0.0207
(0.142) 		0.0398
(0.192)
RABGAP1 20 (7%) 269 0.00029
(0.0134) 		5e-05
(0.00537) 		0.00888
(0.0939) 		3e-05
(0.00362) 		0.0308
(0.171) 		1e-05
(0.00204) 		0.0512
(0.218) 		0.0296
(0.171)
PLEKHA5 15 (5%) 274 0.0035
(0.0565) 		0.0223
(0.147) 		0.375
(0.559) 		0.0434
(0.201) 		0.00374
(0.0577) 		0.00056
(0.0187) 		0.00365
(0.0571) 		0.0479
(0.209)
ZC3H13 29 (10%) 260 0.00012
(0.00865) 		0.00149
(0.0339) 		0.00717
(0.0843) 		0.00012
(0.00865) 		0.00039
(0.0154) 		2e-05
(0.00296) 		0.0189
(0.134) 		0.0869
(0.272)
ITPR2 25 (9%) 264 0.0148
(0.12) 		0.144
(0.337) 		0.0399
(0.192) 		0.00526
(0.0708) 		0.00363
(0.0571) 		0.00735
(0.0852) 		0.0183
(0.131) 		0.0231
(0.149)
MLL3 45 (16%) 244 1e-05
(0.00204) 		0.00065
(0.0208) 		0.058
(0.23) 		2e-05
(0.00296) 		0.00215
(0.0421) 		0.00011
(0.00813) 		0.00185
(0.0385) 		0.0102
(0.103)
KIAA0195 16 (6%) 273 0.00295
(0.0519) 		0.00469
(0.067) 		0.0986
(0.291) 		0.00158
(0.035) 		0.0282
(0.168) 		0.00055
(0.0187) 		0.00487
(0.0674) 		0.00552
(0.0723)
HIVEP1 22 (8%) 267 0.00107
(0.0273) 		0.0212
(0.144) 		0.206
(0.413) 		0.00026
(0.0128) 		0.0136
(0.115) 		0.00022
(0.0118) 		0.00545
(0.0722) 		0.00201
(0.041)
SLC12A7 18 (6%) 271 0.0111
(0.106) 		0.0325
(0.175) 		0.409
(0.588) 		0.0459
(0.203) 		0.00298
(0.0521) 		0.00381
(0.0584) 		0.00078
(0.0227) 		0.00136
(0.0324)
ARFGEF1 24 (8%) 265 0.00025
(0.0126) 		0.012
(0.111) 		0.104
(0.298) 		0.00169
(0.0363) 		0.00047
(0.017) 		0.00016
(0.00985) 		0.00239
(0.0462) 		0.00111
(0.028)
PTPRJ 24 (8%) 265 0.00281
(0.0509) 		0.017
(0.126) 		0.124
(0.312) 		0.00688
(0.0825) 		0.00073
(0.022) 		0.00066
(0.021) 		0.00515
(0.07) 		0.00972
(0.0999)
PPL 16 (6%) 273 0.0326
(0.175) 		0.0765
(0.262) 		0.0487
(0.211) 		0.0215
(0.145) 		0.00283
(0.0509) 		0.0105
(0.104) 		0.00304
(0.0524) 		0.017
(0.126)
MGA 25 (9%) 264 0.00013
(0.00894) 		0.00324
(0.0544) 		0.184
(0.392) 		0.00686
(0.0824) 		0.0153
(0.122) 		3e-05
(0.00362) 		0.0006
(0.0197) 		0.0241
(0.152)
TP53 137 (47%) 152 1e-05
(0.00204) 		0.00167
(0.036) 		0.0666
(0.246) 		1e-05
(0.00204) 		0.0264
(0.161) 		1e-05
(0.00204) 		0.489
(0.646) 		0.0192
(0.135)
LARP4B 27 (9%) 262 3e-05
(0.00362) 		8e-05
(0.00717) 		0.862
(0.944) 		0.0221
(0.147) 		0.00647
(0.0795) 		0.00016
(0.00985) 		0.016
(0.123) 		0.0961
(0.285)
CDH1 29 (10%) 260 0.00056
(0.0187) 		0.00365
(0.0571) 		0.00079
(0.0229) 		0.029
(0.171) 		0.00341
(0.0562) 		6e-05
(0.00601) 		0.111
(0.305) 		0.398
(0.577)
ZBTB7C 15 (5%) 274 0.00468
(0.067) 		0.00046
(0.0169) 		0.186
(0.394) 		0.0247
(0.155) 		0.0908
(0.277) 		0.0211
(0.144) 		0.0107
(0.104) 		0.0292
(0.171)
APC 42 (15%) 247 0.507
(0.665) 		0.426
(0.602) 		0.0185
(0.131) 		0.00019
(0.0111) 		0.00055
(0.0187) 		0.00272
(0.0499) 		0.00261
(0.0487) 		0.00153
(0.0344)
ZNF43 34 (12%) 255 0.00338
(0.0561) 		0.00477
(0.067) 		0.171
(0.37) 		0.0058
(0.0747) 		0.0004
(0.0157) 		3e-05
(0.00362) 		0.124
(0.312) 		0.0237
(0.151)
C14ORF43 20 (7%) 269 0.00014
(0.0093) 		0.00662
(0.0805) 		0.901
(0.978) 		0.0407
(0.193) 		0.031
(0.171) 		0.00088
(0.0244) 		0.028
(0.167) 		0.165
(0.362)
FLNB 24 (8%) 265 0.00025
(0.0126) 		0.0488
(0.211) 		0.343
(0.535) 		0.0143
(0.117) 		0.0939
(0.283) 		0.00031
(0.0136) 		0.0166
(0.125) 		0.0236
(0.15)
BTBD7 18 (6%) 271 0.0223
(0.147) 		0.018
(0.129) 		0.133
(0.322) 		0.00152
(0.0344) 		0.0121
(0.111) 		0.00098
(0.0256) 		0.0409
(0.193) 		0.129
(0.32)
CTNND1 19 (7%) 270 0.00022
(0.0118) 		0.0296
(0.171) 		0.604
(0.734) 		0.034
(0.177) 		0.00862
(0.0923) 		0.00511
(0.0698) 		0.0802
(0.266) 		0.00187
(0.0387)
SVIL 26 (9%) 263 0.00039
(0.0154) 		0.0472
(0.207) 		0.809
(0.907) 		0.00206
(0.0414) 		0.0124
(0.112) 		0.00834
(0.09) 		0.0229
(0.149) 		0.0571
(0.229)
ZFHX3 38 (13%) 251 0.00046
(0.0169) 		0.00049
(0.0175) 		0.0835
(0.269) 		0.00097
(0.0255) 		0.00145
(0.0335) 		2e-05
(0.00296) 		0.0504
(0.215) 		0.0296
(0.171)
PREPL 22 (8%) 267 0.0161
(0.123) 		0.0122
(0.111) 		0.102
(0.296) 		0.00284
(0.0509) 		0.138
(0.327) 		0.0051
(0.0698) 		0.00267
(0.0492) 		0.0288
(0.171)
STAB1 28 (10%) 261 0.0001
(0.00799) 		0.00069
(0.0214) 		0.254
(0.46) 		0.00038
(0.0153) 		0.00516
(0.07) 		0.00094
(0.0253) 		0.0233
(0.15) 		0.14
(0.33)
OSBP2 11 (4%) 278 0.00588
(0.0752) 		0.0294
(0.171) 		0.278
(0.478) 		0.0176
(0.128) 		0.026
(0.16) 		0.0152
(0.121) 		0.195
(0.402) 		0.0489
(0.212)
LRP1 30 (10%) 259 8e-05
(0.00717) 		0.0647
(0.244) 		0.401
(0.581) 		0.00732
(0.0852) 		0.0117
(0.109) 		4e-05
(0.00464) 		0.00025
(0.0126) 		0.0444
(0.201)
PSME4 35 (12%) 254 0.00028
(0.0134) 		0.00022
(0.0118) 		0.593
(0.727) 		0.0003
(0.0134) 		0.00768
(0.0867) 		1e-05
(0.00204) 		0.0569
(0.228) 		0.00849
(0.0913)
COL12A1 46 (16%) 243 0.0342
(0.177) 		0.024
(0.152) 		0.244
(0.45) 		0.0169
(0.126) 		0.0352
(0.18) 		0.00031
(0.0136) 		0.0112
(0.106) 		0.0533
(0.225)
ADAMTSL4 15 (5%) 274 0.0034
(0.0561) 		0.022
(0.147) 		0.0235
(0.15) 		0.00353
(0.0567) 		0.0395
(0.191) 		0.0314
(0.172) 		0.123
(0.312) 		0.147
(0.342)
KIAA1324L 21 (7%) 268 0.128
(0.319) 		0.0331
(0.176) 		0.0972
(0.287) 		0.0021
(0.0418) 		0.00989
(0.101) 		0.0003
(0.0134) 		0.0323
(0.174) 		0.00361
(0.0571)
EPHA5 26 (9%) 263 0.519
(0.675) 		0.0687
(0.248) 		0.0328
(0.175) 		0.00755
(0.086) 		0.00154
(0.0345) 		0.0379
(0.187) 		0.0003
(0.0134) 		0.0108
(0.104)
SYCP2 17 (6%) 272 0.0257
(0.159) 		0.556
(0.701) 		0.204
(0.412) 		0.00308
(0.0529) 		0.00562
(0.0733) 		0.0104
(0.104) 		0.00505
(0.0694) 		0.0394
(0.191)
FLG 62 (21%) 227 0.539
(0.688) 		0.211
(0.418) 		0.0316
(0.172) 		0.00082
(0.0234) 		0.00244
(0.0462) 		0.0338
(0.177) 		0.00026
(0.0128) 		0.00209
(0.0417)
NLRC5 19 (7%) 270 4e-05
(0.00464) 		0.117
(0.309) 		0.431
(0.606) 		0.0127
(0.112) 		0.00873
(0.093) 		0.00016
(0.00985) 		0.0226
(0.149) 		0.0454
(0.202)
BRD3 16 (6%) 273 0.00159
(0.0351) 		0.0354
(0.181) 		0.0369
(0.184) 		0.00136
(0.0324) 		0.0282
(0.168) 		0.103
(0.297) 		0.029
(0.171) 		0.204
(0.412)
DCHS1 29 (10%) 260 0.112
(0.306) 		0.0017
(0.0364) 		0.127
(0.317) 		0.014
(0.116) 		0.0325
(0.175) 		0.00031
(0.0136) 		0.00798
(0.0877) 		0.00764
(0.0865)
ITGA7 14 (5%) 275 0.00077
(0.0225) 		0.0962
(0.285) 		0.273
(0.476) 		0.00481
(0.0674) 		0.00624
(0.078) 		0.0103
(0.104) 		0.0122
(0.111) 		0.0417
(0.194)
LRP12 23 (8%) 266 0.00203
(0.041) 		0.00093
(0.0251) 		0.339
(0.531) 		0.116
(0.308) 		0.0001
(0.00799) 		0.00513
(0.0699) 		0.00096
(0.0255) 		0.00076
(0.0224)
MLL4 23 (8%) 266 0.00044
(0.0165) 		0.0003
(0.0134) 		0.102
(0.296) 		0.00182
(0.0382) 		0.00778
(0.0869) 		0.034
(0.177) 		0.0107
(0.104) 		0.0793
(0.265)
LMAN1 22 (8%) 267 6e-05
(0.00601) 		0.0589
(0.23) 		0.262
(0.466) 		0.00361
(0.0571) 		0.0141
(0.117) 		0.00209
(0.0417) 		0.0184
(0.131) 		0.0755
(0.262)
PLEKHA6 20 (7%) 269 0.0143
(0.117) 		0.0657
(0.244) 		0.751
(0.854) 		0.344
(0.535) 		0.0311
(0.171) 		0.0103
(0.104) 		0.0206
(0.142) 		0.0326
(0.175)
HLA-A 15 (5%) 274 0.0231
(0.149) 		0.017
(0.126) 		0.0594
(0.231) 		0.00285
(0.0509) 		0.0036
(0.0571) 		0.0582
(0.23) 		0.00387
(0.059) 		0.0501
(0.215)
FBXW7 27 (9%) 262 0.00145
(0.0335) 		0.0137
(0.115) 		0.395
(0.575) 		0.0985
(0.29) 		0.0332
(0.176) 		0.00109
(0.0277) 		0.00288
(0.051) 		0.0778
(0.263)
KIAA0182 20 (7%) 269 0.00784
(0.0874) 		0.0396
(0.191) 		0.134
(0.322) 		0.00864
(0.0924) 		0.00463
(0.0664) 		0.00027
(0.0132) 		0.567
(0.706) 		0.0772
(0.263)
BCL9L 24 (8%) 265 0.0132
(0.114) 		0.0108
(0.104) 		0.0681
(0.248) 		0.00367
(0.0571) 		0.0207
(0.142) 		0.0175
(0.127) 		0.0757
(0.262) 		0.0797
(0.265)
C7ORF50 10 (3%) 279 0.0336
(0.177) 		0.00421
(0.0624) 		0.162
(0.359) 		0.0147
(0.119) 		0.252
(0.459) 		0.00492
(0.068) 		0.0201
(0.139) 		0.0664
(0.245)
GLI1 17 (6%) 272 0.00015
(0.00974) 		0.0223
(0.147) 		0.265
(0.468) 		0.0121
(0.111) 		0.0761
(0.262) 		0.00708
(0.0838) 		0.0192
(0.135) 		0.285
(0.487)
ZC3H18 18 (6%) 271 0.0504
(0.215) 		0.0171
(0.126) 		0.407
(0.586) 		0.0453
(0.201) 		0.0108
(0.104) 		0.00073
(0.022) 		0.0228
(0.149) 		0.0944
(0.284)
INPPL1 22 (8%) 267 0.00064
(0.0207) 		0.0686
(0.248) 		0.561
(0.702) 		0.0189
(0.134) 		0.00266
(0.0491) 		0.00016
(0.00985) 		0.0568
(0.228) 		0.0367
(0.184)
ARID1B 27 (9%) 262 0.00032
(0.0138) 		0.0908
(0.277) 		0.658
(0.779) 		0.171
(0.37) 		0.00754
(0.086) 		0.00011
(0.00813) 		0.00137
(0.0324) 		0.0295
(0.171)
AKAP13 28 (10%) 261 0.116
(0.308) 		0.0872
(0.272) 		0.0696
(0.251) 		0.00778
(0.0869) 		0.00506
(0.0694) 		0.00786
(0.0874) 		0.0107
(0.104) 		0.0328
(0.175)
TLE2 19 (7%) 270 0.00038
(0.0153) 		0.00083
(0.0236) 		0.134
(0.322) 		0.00157
(0.0349) 		0.118
(0.309) 		0.00011
(0.00813) 		0.0114
(0.107) 		0.0793
(0.265)
SLC26A7 14 (5%) 275 0.0334
(0.177) 		0.235
(0.438) 		0.186
(0.394) 		0.0251
(0.157) 		0.00638
(0.0792) 		0.0836
(0.269) 		0.00071
(0.0217) 		0.0133
(0.115)
ZNF608 15 (5%) 274 0.00076
(0.0224) 		0.00699
(0.0835) 		1
(1.00) 		0.16
(0.359) 		0.0401
(0.193) 		0.00068
(0.0212) 		0.0103
(0.104) 		0.0858
(0.27)
KIAA1967 17 (6%) 272 6e-05
(0.00601) 		0.00123
(0.0304) 		0.207
(0.415) 		0.0032
(0.0539) 		0.0176
(0.127) 		0.00028
(0.0134) 		0.122
(0.312) 		0.231
(0.434)
AXIN2 15 (5%) 274 0.0323
(0.174) 		0.0683
(0.248) 		0.326
(0.522) 		0.0428
(0.199) 		0.0405
(0.193) 		0.0308
(0.171) 		0.041
(0.193) 		0.164
(0.36)
C5ORF42 26 (9%) 263 0.00427
(0.0626) 		0.00065
(0.0208) 		0.00402
(0.0606) 		0.00149
(0.0339) 		0.139
(0.328) 		0.00651
(0.0796) 		0.558
(0.702) 		0.223
(0.425)
PLXNA2 23 (8%) 266 0.0092
(0.0959) 		0.0275
(0.165) 		0.429
(0.605) 		0.0857
(0.27) 		0.00548
(0.0723) 		0.0012
(0.0298) 		0.022
(0.147) 		0.157
(0.358)
CR1 25 (9%) 264 9e-05
(0.00794) 		0.262
(0.467) 		0.0435
(0.201) 		7e-05
(0.00657) 		0.00375
(0.0577) 		0.00095
(0.0253) 		0.0755
(0.262) 		0.161
(0.359)
RBM6 20 (7%) 269 0.00243
(0.0462) 		0.0132
(0.114) 		0.119
(0.31) 		0.00039
(0.0154) 		0.0152
(0.122) 		0.0001
(0.00799) 		0.151
(0.347) 		0.211
(0.418)
BTBD11 20 (7%) 269 0.0197
(0.137) 		0.00463
(0.0664) 		0.149
(0.344) 		0.183
(0.391) 		0.00172
(0.0367) 		0.00299
(0.0521) 		0.129
(0.32) 		0.0006
(0.0197)
CASD1 11 (4%) 278 0.0437
(0.201) 		0.0298
(0.171) 		0.226
(0.428) 		0.03
(0.171) 		0.189
(0.395) 		0.0152
(0.121) 		0.043
(0.2) 		0.112
(0.306)
KCNJ10 11 (4%) 278 0.00571
(0.074) 		0.0165
(0.124) 		0.0871
(0.272) 		0.0302
(0.171) 		0.0266
(0.161) 		1e-05
(0.00204) 		0.0838
(0.269) 		0.0535
(0.225)
DNAH5 56 (19%) 233 0.0114
(0.107) 		0.00445
(0.0646) 		0.231
(0.434) 		0.218
(0.422) 		0.0001
(0.00799) 		0.00021
(0.0117) 		0.0814
(0.268) 		0.00021
(0.0117)
KCNH2 13 (4%) 276 0.293
(0.495) 		0.231
(0.434) 		0.0189
(0.134) 		0.0614
(0.235) 		0.0137
(0.115) 		0.00737
(0.0853) 		0.0496
(0.213) 		0.0156
(0.122)
MAP7D3 16 (6%) 273 0.00242
(0.0462) 		0.0937
(0.283) 		0.56
(0.702) 		0.191
(0.397) 		0.00709
(0.0838) 		0.00138
(0.0324) 		0.0042
(0.0624) 		0.00064
(0.0207)
SAP130 11 (4%) 278 0.00524
(0.0707) 		0.0161
(0.123) 		0.22
(0.424) 		0.0409
(0.193) 		0.0258
(0.159) 		0.0367
(0.184) 		0.33
(0.522) 		0.216
(0.422)
SLC45A4 18 (6%) 271 0.0108
(0.104) 		0.0125
(0.112) 		0.431
(0.606) 		0.0338
(0.177) 		0.0355
(0.181) 		0.00901
(0.0946) 		0.0908
(0.277) 		0.128
(0.318)
UBXN6 12 (4%) 277 0.0122
(0.111) 		0.00138
(0.0324) 		0.726
(0.838) 		0.141
(0.331) 		0.0208
(0.142) 		0.00425
(0.0626) 		0.0496
(0.213) 		0.0969
(0.287)
ZNF292 21 (7%) 268 0.00021
(0.0117) 		0.0251
(0.157) 		0.187
(0.394) 		0.00316
(0.0538) 		0.064
(0.242) 		0.00034
(0.0144) 		0.00302
(0.0522) 		0.0528
(0.223)
YLPM1 18 (6%) 271 0.00064
(0.0207) 		0.0358
(0.182) 		0.561
(0.702) 		0.214
(0.421) 		0.0364
(0.184) 		0.00897
(0.0946) 		0.0159
(0.123) 		0.0514
(0.218)
KIRREL2 12 (4%) 277 0.0123
(0.111) 		0.0957
(0.285) 		0.728
(0.839) 		0.0413
(0.193) 		0.114
(0.308) 		0.00183
(0.0382) 		0.0202
(0.139) 		0.0394
(0.191)
FAM186B 10 (3%) 279 0.0112
(0.106) 		0.0542
(0.225) 		0.826
(0.913) 		0.335
(0.527) 		0.0348
(0.178) 		1e-05
(0.00204) 		0.0442
(0.201) 		0.0338
(0.177)
TRIM46 12 (4%) 277 0.0256
(0.158) 		0.0156
(0.122) 		0.217
(0.422) 		0.00841
(0.0906) 		0.0205
(0.142) 		0.00415
(0.062) 		0.0838
(0.269) 		0.111
(0.304)
AKAP11 14 (5%) 275 0.222
(0.425) 		0.108
(0.301) 		0.118
(0.309) 		0.0101
(0.102) 		0.0164
(0.124) 		0.016
(0.123) 		0.0107
(0.104) 		0.0479
(0.21)
SCN9A 28 (10%) 261 0.892
(0.969) 		0.0306
(0.171) 		0.0201
(0.139) 		0.00816
(0.0887) 		0.046
(0.204) 		0.0994
(0.292) 		0.0332
(0.176) 		0.115
(0.308)
DISP2 15 (5%) 274 0.125
(0.313) 		0.00471
(0.067) 		0.376
(0.56) 		0.0614
(0.235) 		0.00373
(0.0577) 		0.003
(0.0522) 		0.00017
(0.0104) 		0.00483
(0.0674)
PEG3 31 (11%) 258 0.296
(0.498) 		0.00368
(0.0571) 		0.142
(0.334) 		0.141
(0.332) 		0.00881
(0.0937) 		0.0277
(0.166) 		0.0396
(0.191) 		0.00619
(0.0777)
MAN2B1 16 (6%) 273 0.0198
(0.138) 		0.0128
(0.112) 		0.273
(0.476) 		0.0236
(0.151) 		0.0283
(0.168) 		0.00052
(0.0182) 		0.234
(0.437) 		0.142
(0.332)
RHOBTB2 16 (6%) 273 0.02
(0.139) 		0.608
(0.734) 		1
(1.00) 		0.105
(0.298) 		0.00301
(0.0522) 		0.00085
(0.0239) 		0.00076
(0.0224) 		0.0319
(0.173)
ZNF217 14 (5%) 275 0.222
(0.425) 		0.0308
(0.171) 		0.1
(0.293) 		0.0104
(0.104) 		0.0185
(0.131) 		0.117
(0.308) 		0.0206
(0.142) 		0.0158
(0.122)
B2M 17 (6%) 272 0.00021
(0.0117) 		0.0331
(0.176) 		0.5
(0.658) 		0.0123
(0.111) 		0.0746
(0.261) 		0.0009
(0.0245) 		0.0763
(0.262) 		0.0752
(0.262)
GNG12 11 (4%) 278 0.00538
(0.0719) 		0.668
(0.785) 		1
(1.00) 		0.226
(0.428) 		0.0266
(0.161) 		0.00484
(0.0674) 		0.0228
(0.149) 		0.161
(0.359)
MVK 13 (4%) 276 0.0224
(0.148) 		0.00747
(0.0857) 		0.216
(0.422) 		0.0413
(0.193) 		0.083
(0.269) 		0.00076
(0.0224) 		0.816
(0.907) 		0.518
(0.675)
FRMD4A 18 (6%) 271 0.0107
(0.104) 		0.00093
(0.0251) 		0.115
(0.308) 		0.021
(0.143) 		0.158
(0.358) 		0.0152
(0.122) 		0.0524
(0.222) 		0.0667
(0.246)
MBD6 23 (8%) 266 0.00425
(0.0626) 		0.256
(0.46) 		0.132
(0.321) 		0.0451
(0.201) 		0.00722
(0.0845) 		0.00019
(0.0111) 		0.0897
(0.276) 		0.0844
(0.269)
PAX6 18 (6%) 271 0.0224
(0.147) 		0.0125
(0.112) 		0.41
(0.588) 		0.00633
(0.079) 		0.0601
(0.232) 		0.0388
(0.19) 		0.091
(0.277) 		0.117
(0.308)
SNAPC2 11 (4%) 278 0.0554
(0.226) 		0.037
(0.184) 		0.276
(0.478) 		0.0178
(0.129) 		0.193
(0.4) 		0.0406
(0.193) 		0.0497
(0.213) 		0.351
(0.543)
IWS1 12 (4%) 277 0.0363
(0.183) 		0.109
(0.302) 		0.0396
(0.191) 		0.225
(0.427) 		0.0215
(0.145) 		0.0451
(0.201) 		0.481
(0.642) 		0.477
(0.64)
ZNF878 12 (4%) 277 0.012
(0.111) 		0.00795
(0.0875) 		0.088
(0.273) 		0.00202
(0.041) 		0.115
(0.308) 		0.00127
(0.031) 		0.123
(0.312) 		0.304
(0.51)
SPG20 21 (7%) 268 0.00697
(0.0834) 		0.0241
(0.152) 		0.58
(0.72) 		0.166
(0.363) 		0.0239
(0.152) 		0.00234
(0.0455) 		0.0572
(0.229) 		0.0764
(0.262)
WNT16 13 (4%) 276 0.00933
(0.0968) 		0.169
(0.367) 		0.481
(0.642) 		0.0697
(0.251) 		0.0138
(0.115) 		0.014
(0.116) 		0.0076
(0.0862) 		0.107
(0.301)
CCDC88A 20 (7%) 269 0.00354
(0.0567) 		0.0233
(0.15) 		0.639
(0.762) 		0.0512
(0.218) 		0.00535
(0.0717) 		0.0155
(0.122) 		0.0555
(0.226) 		0.0689
(0.249)
CR2 20 (7%) 269 0.108
(0.301) 		0.0502
(0.215) 		0.0157
(0.122) 		0.0537
(0.225) 		0.0244
(0.153) 		0.0416
(0.194) 		0.129
(0.32) 		0.0293
(0.171)
RASA1 17 (6%) 272 0.311
(0.515) 		0.0201
(0.139) 		0.132
(0.322) 		0.00165
(0.0357) 		0.0186
(0.132) 		0.223
(0.425) 		0.0293
(0.171) 		0.208
(0.415)
TFE3 8 (3%) 281 0.133
(0.322) 		0.0309
(0.171) 		0.16
(0.358) 		0.0449
(0.201) 		0.115
(0.308) 		0.0855
(0.27) 		0.0392
(0.191) 		0.0471
(0.207)
FILIP1L 17 (6%) 272 0.154
(0.353) 		0.0395
(0.191) 		0.0841
(0.269) 		0.0151
(0.121) 		0.0472
(0.207) 		0.174
(0.375) 		0.0314
(0.172) 		0.0891
(0.275)
DDX17 13 (4%) 276 0.00903
(0.0947) 		0.0362
(0.183) 		0.221
(0.425) 		0.00816
(0.0887) 		0.0815
(0.268) 		0.00702
(0.0835) 		0.0882
(0.273) 		0.284
(0.486)
SCLT1 16 (6%) 273 0.0105
(0.104) 		0.146
(0.341) 		0.378
(0.561) 		0.011
(0.105) 		0.0283
(0.168) 		0.00099
(0.0257) 		0.124
(0.313) 		0.321
(0.518)
EIF4G3 15 (5%) 274 0.222
(0.425) 		0.0181
(0.13) 		0.377
(0.56) 		0.0441
(0.201) 		0.09
(0.277) 		0.0217
(0.146) 		0.00442
(0.0644) 		0.0814
(0.268)
MFRP 11 (4%) 278 0.0564
(0.228) 		0.00431
(0.0629) 		0.0387
(0.189) 		0.0174
(0.127) 		0.189
(0.395) 		0.0591
(0.23) 		0.0385
(0.189) 		0.105
(0.298)
EIF5B 18 (6%) 271 0.00041
(0.0157) 		0.0184
(0.131) 		0.264
(0.468) 		0.0741
(0.26) 		0.0114
(0.107) 		0.00054
(0.0187) 		0.0556
(0.226) 		0.0703
(0.252)
PYGO2 7 (2%) 282 0.131
(0.321) 		0.0306
(0.171) 		0.158
(0.358) 		0.014
(0.116) 		0.137
(0.325) 		0.0842
(0.269) 		0.0438
(0.201) 		0.0337
(0.177)
WDR7 17 (6%) 272 0.0003
(0.0134) 		0.1
(0.293) 		0.56
(0.702) 		0.0387
(0.189) 		0.2
(0.408) 		0.00244
(0.0462) 		0.0107
(0.104) 		0.231
(0.434)
RSF1 17 (6%) 272 0.393
(0.573) 		0.00991
(0.101) 		0.133
(0.322) 		0.0359
(0.182) 		0.2
(0.408) 		0.00523
(0.0707) 		0.0548
(0.225) 		0.0375
(0.186)
KIAA0406 12 (4%) 277 0.0369
(0.184) 		0.0297
(0.171) 		0.728
(0.839) 		0.352
(0.543) 		0.66
(0.78) 		0.0162
(0.123) 		0.00978
(0.1) 		0.108
(0.301)
ALPK2 19 (7%) 270 5e-05
(0.00537) 		0.359
(0.55) 		0.607
(0.734) 		0.0122
(0.111) 		0.0411
(0.193) 		0.00029
(0.0134) 		0.158
(0.358) 		0.131
(0.321)
HIVEP3 27 (9%) 262 0.196
(0.403) 		0.00936
(0.0969) 		0.4
(0.58) 		0.487
(0.645) 		0.00281
(0.0509) 		0.083
(0.269) 		0.00165
(0.0357) 		0.0079
(0.0874)
FAM70B 13 (4%) 276 0.0135
(0.115) 		0.0797
(0.265) 		0.481
(0.642) 		0.0256
(0.158) 		0.0806
(0.267) 		0.002
(0.0409) 		0.0381
(0.188) 		0.163
(0.36)
MYEOV 8 (3%) 281 0.0315
(0.172) 		0.0308
(0.171) 		0.122
(0.312) 		0.00678
(0.0821) 		0.0892
(0.276) 		0.0407
(0.193) 		0.0539
(0.225) 		0.241
(0.447)
CSF3R 12 (4%) 277 0.122
(0.312) 		0.00707
(0.0838) 		0.482
(0.642) 		0.0243
(0.153) 		0.115
(0.308) 		0.0411
(0.193) 		0.0491
(0.212) 		0.351
(0.543)
IKBKE 12 (4%) 277 0.012
(0.111) 		0.147
(0.342) 		0.033
(0.175) 		2e-05
(0.00296) 		0.324
(0.519) 		0.0166
(0.125) 		0.195
(0.402) 		0.0582
(0.23)
GTF3C4 12 (4%) 277 0.00312
(0.0533) 		0.0368
(0.184) 		0.499
(0.657) 		0.227
(0.429) 		0.326
(0.521) 		0.0169
(0.126) 		0.049
(0.212) 		0.166
(0.363)
ACTL6A 8 (3%) 281 0.0312
(0.172) 		0.0169
(0.125) 		0.0859
(0.27) 		0.134
(0.322) 		0.526
(0.678) 		0.0189
(0.134) 		0.121
(0.312) 		0.0452
(0.201)
FYB 11 (4%) 278 0.2
(0.408) 		0.0297
(0.171) 		0.218
(0.422) 		0.0383
(0.188) 		0.0261
(0.16) 		0.0578
(0.23) 		0.015
(0.121) 		0.106
(0.301)
ZFP36L2 8 (3%) 281 0.563
(0.702) 		0.0164
(0.124) 		0.526
(0.678) 		0.223
(0.425) 		0.443
(0.616) 		0.0064
(0.0792) 		0.0449
(0.201) 		0.0343
(0.177)
CAMTA2 16 (6%) 273 0.00018
(0.0109) 		0.0609
(0.233) 		0.272
(0.476) 		0.0703
(0.252) 		0.116
(0.308) 		0.0228
(0.149) 		0.0061
(0.0772) 		0.0444
(0.201)
TIGD7 8 (3%) 281 0.0308
(0.171) 		0.0167
(0.125) 		0.121
(0.312) 		0.00661
(0.0805) 		0.0921
(0.279) 		0.00792
(0.0874) 		0.124
(0.313) 		0.1
(0.293)
MAP1A 15 (5%) 274 0.0752
(0.262) 		0.072
(0.255) 		0.273
(0.476) 		0.0395
(0.191) 		0.0403
(0.193) 		0.0212
(0.144) 		0.0123
(0.111) 		0.206
(0.413)
ABCA5 20 (7%) 269 0.329
(0.522) 		0.485
(0.642) 		0.0369
(0.184) 		0.0446
(0.201) 		0.00487
(0.0674) 		0.133
(0.322) 		0.0274
(0.165) 		0.088
(0.273)
ZNF334 12 (4%) 277 0.121
(0.312) 		0.2
(0.408) 		0.184
(0.392) 		0.0413
(0.193) 		0.0417
(0.194) 		0.0223
(0.147) 		0.0394
(0.191) 		0.105
(0.298)
TNKS1BP1 19 (7%) 270 0.00042
(0.0159) 		0.0866
(0.271) 		0.177
(0.38) 		0.0444
(0.201) 		0.0989
(0.291) 		0.0444
(0.201) 		0.0279
(0.167) 		0.169
(0.367)
FBN3 28 (10%) 261 0.113
(0.307) 		0.137
(0.325) 		0.00287
(0.051) 		0.00104
(0.0268) 		0.0461
(0.204) 		0.00042
(0.0159) 		0.181
(0.388) 		0.056
(0.227)
HLA-F 11 (4%) 278 0.0444
(0.201) 		0.232
(0.435) 		0.708
(0.82) 		0.0743
(0.26) 		0.0258
(0.159) 		0.189
(0.395) 		0.00398
(0.0603) 		0.00263
(0.0487)
AMPD3 19 (7%) 270 0.0147
(0.119) 		0.0126
(0.112) 		0.134
(0.322) 		0.00652
(0.0796) 		0.118
(0.31) 		0.00578
(0.0746) 		0.0608
(0.233) 		0.212
(0.42)
SBF1 27 (9%) 262 0.00195
(0.04) 		0.0727
(0.256) 		0.23
(0.433) 		0.0116
(0.109) 		0.0326
(0.175) 		0.0463
(0.205) 		0.0637
(0.242) 		0.343
(0.535)
SLC4A3 15 (5%) 274 0.0325
(0.175) 		0.0546
(0.225) 		0.625
(0.748) 		0.0231
(0.149) 		0.0133
(0.115) 		0.157
(0.358) 		0.0565
(0.228) 		0.0419
(0.195)
GPATCH8 23 (8%) 266 0.00029
(0.0134) 		0.181
(0.387) 		0.427
(0.603) 		0.0719
(0.255) 		0.0312
(0.172) 		0.00073
(0.022) 		0.0407
(0.193) 		0.0609
(0.233)
NOL6 17 (6%) 272 0.016
(0.123) 		0.0239
(0.152) 		0.666
(0.784) 		0.0214
(0.145) 		0.0779
(0.263) 		0.00035
(0.0146) 		0.211
(0.418) 		0.349
(0.543)
EPB41L5 8 (3%) 281 0.0302
(0.171) 		0.0776
(0.263) 		0.161
(0.359) 		0.0153
(0.122) 		0.0916
(0.278) 		0.0399
(0.192) 		0.0382
(0.188) 		0.164
(0.36)
HECA 12 (4%) 277 0.00351
(0.0565) 		0.34
(0.531) 		1
(1.00) 		0.141
(0.332) 		0.0411
(0.193) 		0.0172
(0.126) 		0.0231
(0.149) 		0.162
(0.359)
KLF3 19 (7%) 270 0.00366
(0.0571) 		5e-05
(0.00537) 		0.238
(0.443) 		0.00618
(0.0777) 		0.118
(0.31) 		0.211
(0.418) 		0.122
(0.312) 		0.284
(0.486)
NLK 12 (4%) 277 0.0253
(0.157) 		0.0796
(0.265) 		1
(1.00) 		0.327
(0.522) 		0.116
(0.308) 		0.0173
(0.126) 		0.0493
(0.212) 		0.0866
(0.271)
POLM 10 (3%) 279 0.0839
(0.269) 		0.109
(0.301) 		0.0704
(0.252) 		0.327
(0.522) 		0.0341
(0.177) 		0.00364
(0.0571) 		0.0448
(0.201) 		0.212
(0.419)
HLA-B 14 (5%) 275 0.0007
(0.0216) 		0.00138
(0.0324) 		0.481
(0.642) 		0.16
(0.359) 		0.393
(0.574) 		0.0404
(0.193) 		0.501
(0.659) 		0.663
(0.782)
ADAM28 14 (5%) 275 0.0453
(0.201) 		0.0169
(0.125) 		0.164
(0.36) 		0.0238
(0.152) 		0.0727
(0.256) 		0.0565
(0.228) 		0.0847
(0.269) 		0.462
(0.627)
C6ORF89 9 (3%) 280 0.205
(0.413) 		0.00742
(0.0857) 		0.0869
(0.272) 		0.017
(0.126) 		0.0852
(0.27) 		0.0792
(0.265) 		0.0899
(0.277) 		0.048
(0.21)
SOX7 15 (5%) 274 0.0156
(0.122) 		0.0955
(0.285) 		0.47
(0.632) 		0.351
(0.543) 		0.0136
(0.115) 		0.00745
(0.0857) 		0.196
(0.403) 		0.232
(0.435)
TTF1 14 (5%) 275 0.0765
(0.262) 		0.03
(0.171) 		0.482
(0.642) 		0.508
(0.665) 		0.0111
(0.106) 		0.055
(0.225) 		0.122
(0.312) 		0.035
(0.179)
INF2 11 (4%) 278 0.0447
(0.201) 		0.2
(0.408) 		0.0338
(0.177) 		0.0413
(0.193) 		0.184
(0.393) 		0.187
(0.394) 		0.321
(0.518) 		0.305
(0.511)
ALDH3A1 10 (3%) 279 0.0329
(0.175) 		0.377
(0.56) 		0.225
(0.428) 		0.076
(0.262) 		0.0344
(0.177) 		0.216
(0.422) 		0.0438
(0.201) 		0.241
(0.447)
FHDC1 15 (5%) 274 0.00344
(0.0563) 		0.0373
(0.185) 		0.501
(0.659) 		0.0402
(0.193) 		0.167
(0.365) 		0.0575
(0.23) 		0.194
(0.401) 		0.351
(0.543)
RTN2 11 (4%) 278 0.0057
(0.074) 		0.107
(0.301) 		1
(1.00) 		0.226
(0.428) 		0.025
(0.156) 		0.124
(0.313) 		0.024
(0.152) 		0.162
(0.359)
MSH6 19 (7%) 270 0.0191
(0.134) 		0.0105
(0.104) 		0.605
(0.734) 		0.00667
(0.081) 		0.121
(0.312) 		0.116
(0.308) 		0.0919
(0.279) 		0.351
(0.543)
EPHX1 9 (3%) 280 0.0161
(0.123) 		0.377
(0.56) 		0.0946
(0.284) 		0.165
(0.361) 		0.0839
(0.269) 		0.00162
(0.0355) 		0.0449
(0.201) 		0.114
(0.307)
RCOR3 12 (4%) 277 0.00541
(0.0719) 		0.037
(0.184) 		0.53
(0.679) 		0.0774
(0.263) 		0.326
(0.521) 		0.0439
(0.201) 		0.195
(0.402) 		0.548
(0.695)
ACVR1B 11 (4%) 278 0.00541
(0.0719) 		0.109
(0.302) 		0.0949
(0.284) 		0.00026
(0.0128) 		0.895
(0.972) 		0.0104
(0.104) 		0.32
(0.518) 		0.462
(0.627)
VPS13A 32 (11%) 257 0.00117
(0.0293) 		0.0569
(0.228) 		0.44
(0.615) 		0.18
(0.386) 		0.159
(0.358) 		0.00054
(0.0187) 		0.022
(0.147) 		0.0923
(0.279)
ZCCHC6 13 (4%) 276 0.00179
(0.0379) 		0.558
(0.702) 		0.728
(0.839) 		0.14
(0.331) 		0.0136
(0.115) 		0.00644
(0.0793) 		0.0882
(0.273) 		0.0954
(0.285)
AKNAD1 18 (6%) 271 0.397
(0.577) 		0.101
(0.294) 		0.0386
(0.189) 		0.243
(0.449) 		0.0355
(0.181) 		0.0259
(0.16) 		0.0648
(0.244) 		0.0501
(0.215)
EBF3 12 (4%) 277 0.025
(0.156) 		0.013
(0.113) 		0.707
(0.82) 		0.0756
(0.262) 		0.329
(0.522) 		0.0486
(0.211) 		0.0534
(0.225) 		0.232
(0.435)
IDH2 4 (1%) 285 0.312
(0.516) 		0.816
(0.907) 		0.0138
(0.115) 		0.85
(0.935) 		0.261
(0.465) 		0.0036
(0.0571) 		0.129
(0.32) 		0.00804
(0.088)
ATXN2L 17 (6%) 272 0.0837
(0.269) 		0.0353
(0.18) 		0.406
(0.586) 		0.00619
(0.0777) 		0.0761
(0.262) 		0.0001
(0.00799) 		0.159
(0.358) 		0.415
(0.593)
RB1CC1 10 (3%) 279 0.0327
(0.175) 		0.108
(0.301) 		0.195
(0.402) 		0.158
(0.358) 		0.0345
(0.177) 		0.215
(0.422) 		0.0234
(0.15) 		0.104
(0.298)
KIN 11 (4%) 278 0.00553
(0.0723) 		0.148
(0.343) 		0.278
(0.478) 		0.0746
(0.261) 		0.0264
(0.161) 		0.0155
(0.122) 		0.0888
(0.275) 		0.095
(0.284)
HAUS6 11 (4%) 278 0.0444
(0.201) 		0.201
(0.409) 		0.379
(0.561) 		0.141
(0.332) 		0.0263
(0.161) 		0.0581
(0.23) 		0.00805
(0.088) 		0.0995
(0.292)
EXO1 16 (6%) 273 0.0634
(0.241) 		0.00801
(0.0879) 		0.208
(0.415) 		0.0123
(0.111) 		0.117
(0.308) 		2e-05
(0.00296) 		0.384
(0.565) 		0.399
(0.578)
PRMT8 8 (3%) 281 0.031
(0.171) 		0.666
(0.784) 		0.458
(0.627) 		0.578
(0.718) 		0.0902
(0.277) 		0.0862
(0.271) 		0.023
(0.149) 		0.0478
(0.209)
ATM 30 (10%) 259 0.0988
(0.291) 		0.0757
(0.262) 		0.325
(0.521) 		0.00412
(0.0617) 		0.0102
(0.103) 		0.0154
(0.122) 		0.42
(0.598) 		0.278
(0.479)
CADPS2 11 (4%) 278 0.462
(0.627) 		0.0171
(0.126) 		0.0876
(0.272) 		0.0302
(0.171) 		0.288
(0.489) 		0.0119
(0.11) 		0.125
(0.313) 		0.0681
(0.248)
RUSC2 19 (7%) 270 0.0142
(0.117) 		0.0294
(0.171) 		0.497
(0.656) 		0.0396
(0.191) 		0.28
(0.481) 		0.151
(0.348) 		0.319
(0.518) 		0.529
(0.679)
UHRF1BP1 15 (5%) 274 0.00041
(0.0157) 		0.205
(0.413) 		0.151
(0.347) 		0.0465
(0.205) 		0.414
(0.593) 		0.00883
(0.0937) 		0.0964
(0.286) 		0.145
(0.339)
IRS1 20 (7%) 269 0.0125
(0.112) 		0.157
(0.357) 		0.628
(0.75) 		0.0178
(0.129) 		0.0948
(0.284) 		0.0993
(0.292) 		0.0177
(0.128) 		0.0551
(0.225)
GPR124 13 (4%) 276 0.0615
(0.235) 		0.166
(0.363) 		0.655
(0.777) 		0.158
(0.358) 		0.0221
(0.147) 		0.0136
(0.115) 		0.0495
(0.213) 		0.0955
(0.285)
SYNJ2 16 (6%) 273 0.00473
(0.067) 		0.156
(0.355) 		0.624
(0.747) 		0.0705
(0.252) 		0.115
(0.308) 		0.0105
(0.104) 		0.0413
(0.193) 		0.286
(0.487)
TACC2 30 (10%) 259 0.0318
(0.173) 		0.551
(0.697) 		0.401
(0.581) 		0.195
(0.402) 		0.235
(0.438) 		0.038
(0.187) 		0.0222
(0.147) 		0.112
(0.306)
EDNRB 25 (9%) 264 0.155
(0.354) 		0.0138
(0.115) 		0.0526
(0.223) 		0.083
(0.269) 		0.0154
(0.122) 		0.00918
(0.0959) 		0.0772
(0.263) 		0.205
(0.413)
ARHGEF17 17 (6%) 272 0.00242
(0.0462) 		0.217
(0.422) 		0.31
(0.515) 		0.346
(0.538) 		0.218
(0.422) 		0.00929
(0.0965) 		0.13
(0.321) 		0.0151
(0.121)
LARP1 10 (3%) 279 0.0833
(0.269) 		0.0308
(0.171) 		0.278
(0.478) 		0.324
(0.519) 		0.0344
(0.177) 		0.27
(0.474) 		0.0384
(0.189) 		0.127
(0.317)
GPC4 9 (3%) 280 0.699
(0.814) 		0.0577
(0.23) 		0.0872
(0.272) 		0.00212
(0.0418) 		0.0864
(0.271) 		0.0469
(0.206) 		0.00873
(0.093) 		0.054
(0.225)
NF1 25 (9%) 264 0.0155
(0.122) 		0.0658
(0.245) 		0.419
(0.597) 		0.0397
(0.192) 		0.18
(0.386) 		0.00473
(0.067) 		0.21
(0.418) 		0.314
(0.517)
C11ORF63 15 (5%) 274 1
(1.00) 		0.0032
(0.0539) 		0.274
(0.476) 		0.563
(0.702) 		0.0407
(0.193) 		0.0577
(0.23) 		0.0964
(0.286) 		0.0174
(0.127)
KCNC1 7 (2%) 282 0.103
(0.296) 		0.0306
(0.171) 		0.245
(0.451) 		0.0317
(0.172) 		0.592
(0.727) 		0.0296
(0.171) 		0.816
(0.907) 		0.254
(0.46)
PLEKHH3 9 (3%) 280 0.0157
(0.122) 		0.671
(0.788) 		0.288
(0.489) 		0.363
(0.55) 		0.084
(0.269) 		0.0915
(0.278) 		0.0384
(0.189) 		0.0487
(0.211)
ELK3 6 (2%) 283 0.398
(0.577) 		0.376
(0.56) 		0.243
(0.449) 		0.0314
(0.172) 		0.312
(0.516) 		0.0137
(0.115) 		0.0446
(0.201) 		0.216
(0.422)
MAGI2 28 (10%) 261 0.179
(0.383) 		0.46
(0.627) 		0.165
(0.362) 		0.265
(0.468) 		0.00191
(0.0393) 		0.0506
(0.216) 		0.00601
(0.0766) 		0.0453
(0.201)
KANK4 10 (3%) 279 0.0829
(0.269) 		0.0673
(0.247) 		0.0877
(0.272) 		0.00212
(0.0418) 		0.0341
(0.177) 		0.0077
(0.0867) 		0.0838
(0.269) 		0.304
(0.51)
SOS2 19 (7%) 270 0.00966
(0.0995) 		0.0774
(0.263) 		0.118
(0.309) 		0.0153
(0.122) 		0.656
(0.777) 		0.0135
(0.115) 		0.385
(0.566) 		0.416
(0.595)
PSD 16 (6%) 273 0.0202
(0.139) 		0.051
(0.217) 		0.206
(0.413) 		0.0404
(0.193) 		0.0728
(0.256) 		0.0309
(0.171) 		0.0534
(0.225) 		0.282
(0.483)
ROCK1 16 (6%) 273 0.285
(0.487) 		0.0369
(0.184) 		0.0711
(0.254) 		0.0399
(0.192) 		0.0705
(0.252) 		0.0105
(0.104) 		0.123
(0.312) 		0.131
(0.321)
IQSEC2 12 (4%) 277 0.0259
(0.16) 		0.251
(0.459) 		0.841
(0.927) 		0.364
(0.55) 		0.116
(0.308) 		0.0409
(0.193) 		0.0198
(0.138) 		0.234
(0.437)
PHKG2 12 (4%) 277 0.0253
(0.157) 		0.0378
(0.187) 		0.707
(0.82) 		0.0752
(0.262) 		0.327
(0.522) 		1e-05
(0.00204) 		0.194
(0.401) 		0.188
(0.394)
OR4C16 13 (4%) 276 0.93
(1.00) 		0.0785
(0.264) 		0.00683
(0.0822) 		0.0309
(0.171) 		0.51
(0.667) 		0.023
(0.149) 		0.0895
(0.276) 		0.267
(0.471)
MTG1 9 (3%) 280 0.032
(0.173) 		0.0314
(0.172) 		0.607
(0.734) 		0.164
(0.36) 		0.352
(0.543) 		0.0813
(0.268) 		0.328
(0.522) 		0.255
(0.46)
CD4 15 (5%) 274 0.00446
(0.0646) 		0.0982
(0.29) 		0.272
(0.476) 		0.0232
(0.149) 		0.09
(0.277) 		0.461
(0.627) 		0.0562
(0.227) 		0.0682
(0.248)
ZMYM4 17 (6%) 272 0.00099
(0.0257) 		0.0552
(0.225) 		0.206
(0.413) 		0.216
(0.422) 		0.018
(0.129) 		0.117
(0.308) 		0.815
(0.907) 		0.13
(0.321)
TBX4 11 (4%) 278 0.0273
(0.165) 		0.0794
(0.265) 		0.523
(0.678) 		0.0787
(0.265) 		0.191
(0.397) 		0.018
(0.129) 		0.123
(0.312) 		0.323
(0.519)
MUC6 34 (12%) 255 0.391
(0.572) 		0.216
(0.422) 		0.0461
(0.204) 		0.0207
(0.142) 		0.0826
(0.269) 		0.073
(0.257) 		0.186
(0.394) 		0.259
(0.464)
PAFAH1B1 12 (4%) 277 0.0055
(0.0723) 		0.079
(0.265) 		0.726
(0.838) 		0.0414
(0.193) 		0.114
(0.307) 		0.129
(0.32) 		0.089
(0.275) 		0.284
(0.486)
DDX6 15 (5%) 274 0.0003
(0.0134) 		0.476
(0.638) 		0.376
(0.56) 		0.14
(0.33) 		0.416
(0.594) 		0.00751
(0.0859) 		1
(1.00) 		1
(1.00)
GPSM3 12 (4%) 277 0.273
(0.476) 		0.201
(0.409) 		0.218
(0.422) 		0.00809
(0.0882) 		0.0416
(0.194) 		0.0962
(0.285) 		0.484
(0.642) 		0.317
(0.517)
STAT2 10 (3%) 279 0.034
(0.177) 		0.217
(0.422) 		0.525
(0.678) 		0.0779
(0.263) 		0.255
(0.46) 		0.0341
(0.177) 		0.272
(0.476) 		0.419
(0.597)
SETDB2 10 (3%) 279 0.321
(0.518) 		0.109
(0.301) 		0.193
(0.401) 		0.395
(0.575) 		0.0343
(0.177) 		0.00043
(0.0162) 		0.484
(0.642) 		0.226
(0.428)
PAMR1 17 (6%) 272 0.0071
(0.0838) 		0.338
(0.529) 		0.916
(0.99) 		0.34
(0.531) 		0.0179
(0.129) 		0.0846
(0.269) 		0.0503
(0.215) 		0.351
(0.543)
USP21 13 (4%) 276 0.124
(0.312) 		0.058
(0.23) 		0.22
(0.424) 		0.201
(0.408) 		0.0823
(0.269) 		0.00105
(0.027) 		0.0845
(0.269) 		0.0124
(0.112)
ATP6V1C2 12 (4%) 277 0.0125
(0.112) 		0.251
(0.459) 		0.069
(0.249) 		0.599
(0.731) 		0.251
(0.459) 		0.0447
(0.201) 		0.194
(0.401) 		0.675
(0.791)
ABCC4 17 (6%) 272 0.0111
(0.106) 		0.335
(0.527) 		0.178
(0.381) 		0.0448
(0.201) 		0.181
(0.388) 		0.0824
(0.269) 		0.149
(0.343) 		0.516
(0.672)
FOXN3 8 (3%) 281 0.0304
(0.171) 		0.0314
(0.172) 		1
(1.00) 		0.362
(0.55) 		0.0914
(0.278) 		0.0683
(0.248) 		0.125
(0.313) 		0.163
(0.359)
PRPF40B 14 (5%) 275 0.0077
(0.0867) 		0.022
(0.147) 		0.871
(0.95) 		0.161
(0.359) 		0.481
(0.642) 		0.0993
(0.292) 		0.532
(0.682) 		0.548
(0.695)
GCC2 10 (3%) 279 0.0113
(0.107) 		0.381
(0.562) 		0.709
(0.82) 		0.364
(0.55) 		0.0346
(0.178) 		0.0651
(0.244) 		0.285
(0.486) 		0.275
(0.477)
KIF13A 20 (7%) 269 0.0193
(0.135) 		0.1
(0.293) 		0.642
(0.765) 		0.279
(0.48) 		0.26
(0.464) 		0.00485
(0.0674) 		0.269
(0.473) 		0.567
(0.706)
TP53BP1 16 (6%) 273 0.00182
(0.0382) 		0.397
(0.577) 		0.331
(0.522) 		0.546
(0.694) 		0.115
(0.308) 		0.00348
(0.0564) 		0.122
(0.312) 		0.281
(0.482)
IFRD1 8 (3%) 281 0.031
(0.171) 		0.377
(0.56) 		0.816
(0.907) 		0.406
(0.586) 		0.0903
(0.277) 		0.0856
(0.27) 		0.0439
(0.201) 		0.238
(0.443)
FAM151A 9 (3%) 280 0.0161
(0.123) 		0.375
(0.559) 		0.0872
(0.272) 		0.03
(0.171) 		0.0864
(0.271) 		0.227
(0.429) 		0.484
(0.642) 		0.475
(0.638)
BEND3 12 (4%) 277 0.0757
(0.262) 		0.589
(0.727) 		0.591
(0.727) 		0.362
(0.55) 		0.116
(0.308) 		0.0156
(0.122) 		0.0488
(0.211) 		0.286
(0.487)
DNAJC1 11 (4%) 278 0.00584
(0.0751) 		0.0369
(0.184) 		0.707
(0.82) 		0.0756
(0.262) 		0.554
(0.699) 		0.182
(0.388) 		0.196
(0.403) 		0.545
(0.694)
HNF1B 6 (2%) 283 0.103
(0.297) 		0.107
(0.301) 		0.117
(0.308) 		0.659
(0.78) 		0.203
(0.41) 		0.00056
(0.0187) 		0.286
(0.487) 		0.0143
(0.117)
FAM113B 13 (4%) 276 0.036
(0.183) 		0.25
(0.459) 		0.654
(0.776) 		0.158
(0.358) 		0.0819
(0.269) 		0.0135
(0.115) 		0.148
(0.343) 		0.212
(0.419)
GPR82 9 (3%) 280 0.482
(0.642) 		0.0307
(0.171) 		0.121
(0.312) 		0.00721
(0.0845) 		0.476
(0.638) 		0.231
(0.434) 		0.502
(0.66) 		0.603
(0.734)
CNBD1 13 (4%) 276 0.205
(0.413) 		0.00714
(0.0841) 		0.161
(0.359) 		0.453
(0.626) 		0.161
(0.359) 		0.228
(0.429) 		0.0417
(0.194) 		0.284
(0.486)
ABCB6 8 (3%) 281 0.0307
(0.171) 		0.376
(0.56) 		0.559
(0.702) 		0.688
(0.802) 		0.0907
(0.277) 		0.0683
(0.248) 		0.0442
(0.201) 		0.216
(0.422)
DNAJC18 13 (4%) 276 0.00149
(0.0339) 		0.0361
(0.183) 		0.871
(0.95) 		0.158
(0.358) 		0.252
(0.46) 		0.513
(0.671) 		0.195
(0.402) 		0.351
(0.543)
DLGAP3 16 (6%) 273 0.333
(0.524) 		0.0125
(0.112) 		0.563
(0.702) 		0.0923
(0.279) 		0.29
(0.491) 		0.0869
(0.272) 		0.0274
(0.165) 		0.43
(0.605)
KIAA0240 12 (4%) 277 0.0264
(0.161) 		1
(1.00) 		0.183
(0.391) 		0.0411
(0.193) 		0.661
(0.781) 		0.661
(0.781) 		0.864
(0.945) 		0.742
(0.847)
FAM193A 15 (5%) 274 0.145
(0.339) 		0.229
(0.432) 		0.206
(0.413) 		0.019
(0.134) 		0.041
(0.193) 		0.158
(0.358) 		0.249
(0.458) 		0.396
(0.576)
C12ORF51 30 (10%) 259 0.00025
(0.0126) 		0.00285
(0.0509) 		0.712
(0.823) 		0.0906
(0.277) 		0.235
(0.438) 		0.0692
(0.25) 		0.077
(0.263) 		0.448
(0.62)
VPRBP 12 (4%) 277 0.00339
(0.0561) 		0.669
(0.786) 		0.706
(0.82) 		0.225
(0.427) 		0.115
(0.308) 		0.0407
(0.193) 		0.498
(0.657) 		0.603
(0.734)
SBNO1 17 (6%) 272 0.293
(0.496) 		0.14
(0.331) 		0.135
(0.323) 		0.00681
(0.0822) 		0.076
(0.262) 		0.00227
(0.0443) 		0.061
(0.234) 		0.163
(0.36)
WASF3 11 (4%) 278 0.538
(0.687) 		0.00429
(0.0628) 		0.378
(0.561) 		0.158
(0.358) 		0.719
(0.831) 		0.0106
(0.104) 		1
(1.00) 		0.904
(0.979)
OTX2 9 (3%) 280 0.0164
(0.124) 		0.376
(0.56) 		0.42
(0.598) 		0.409
(0.588) 		0.0851
(0.269) 		0.0793
(0.265) 		0.0457
(0.203) 		0.214
(0.421)
CRYGD 12 (4%) 277 0.0365
(0.184) 		0.0364
(0.184) 		1
(1.00) 		0.226
(0.428) 		0.73
(0.841) 		0.196
(0.403) 		0.865
(0.945) 		0.742
(0.847)
SRCIN1 13 (4%) 276 0.481
(0.642) 		0.554
(0.699) 		0.185
(0.393) 		0.00348
(0.0564) 		0.51
(0.667) 		0.00459
(0.0662) 		0.405
(0.585) 		0.265
(0.468)
CDH16 13 (4%) 276 0.0142
(0.117) 		0.0943
(0.284) 		0.728
(0.839) 		0.0407
(0.193) 		0.0815
(0.268) 		0.207
(0.415) 		0.121
(0.312) 		0.107
(0.301)
PIGO 10 (3%) 279 0.011
(0.105) 		0.0367
(0.184) 		1
(1.00) 		0.254
(0.46) 		0.604
(0.734) 		0.0861
(0.271) 		0.123
(0.312) 		0.461
(0.627)
MTIF2 15 (5%) 274 0.00049
(0.0175) 		0.0121
(0.111) 		0.324
(0.52) 		0.103
(0.296) 		0.415
(0.594) 		0.2
(0.408) 		0.125
(0.313) 		0.546
(0.694)
KLC2 11 (4%) 278 0.383
(0.564) 		0.655
(0.776) 		0.162
(0.359) 		0.0143
(0.117) 		0.192
(0.398) 		0.00476
(0.067) 		0.593
(0.727) 		0.451
(0.623)
PAPD4 8 (3%) 281 0.0296
(0.171) 		0.0763
(0.262) 		0.16
(0.358) 		0.0153
(0.122) 		0.445
(0.617) 		0.35
(0.543) 		0.275
(0.477) 		0.802
(0.899)
SH3KBP1 13 (4%) 276 0.0219
(0.147) 		0.199
(0.408) 		0.5
(0.658) 		0.0337
(0.177) 		0.252
(0.459) 		0.152
(0.349) 		0.254
(0.46) 		0.319
(0.518)
NFE2L1 9 (3%) 280 0.137
(0.325) 		0.702
(0.817) 		0.379
(0.561) 		0.0309
(0.171) 		0.351
(0.543) 		0.028
(0.167) 		0.737
(0.845) 		0.32
(0.518)
IRS4 23 (8%) 266 0.0125
(0.112) 		0.00501
(0.069) 		0.27
(0.474) 		0.104
(0.298) 		0.116
(0.308) 		0.0595
(0.231) 		0.455
(0.627) 		0.284
(0.486)
C15ORF52 8 (3%) 281 0.0302
(0.171) 		0.0543
(0.225) 		1
(1.00) 		0.257
(0.46) 		0.0915
(0.278) 		0.133
(0.322) 		0.0447
(0.201) 		0.214
(0.421)
IPO11 12 (4%) 277 0.0055
(0.0723) 		0.0816
(0.268) 		0.728
(0.839) 		0.77
(0.869) 		0.327
(0.522) 		0.0414
(0.193) 		0.864
(0.945) 		0.303
(0.509)
PGBD1 12 (4%) 277 0.012
(0.111) 		0.0569
(0.228) 		0.278
(0.478) 		0.0759
(0.262) 		0.115
(0.308) 		0.0012
(0.0298) 		0.124
(0.312) 		0.322
(0.518)
WHSC1L1 16 (6%) 273 0.0639
(0.242) 		0.0372
(0.185) 		0.41
(0.589) 		0.305
(0.511) 		0.0719
(0.255) 		0.00138
(0.0324) 		0.0837
(0.269) 		0.122
(0.312)
FBXO21 12 (4%) 277 0.0359
(0.182) 		0.859
(0.942) 		1
(1.00) 		0.273
(0.476) 		0.731
(0.841) 		0.0435
(0.201) 		0.816
(0.907) 		1
(1.00)
BRWD1 21 (7%) 268 0.00139
(0.0325) 		0.708
(0.82) 		0.186
(0.394) 		0.266
(0.469) 		0.494
(0.653) 		0.0467
(0.206) 		0.229
(0.432) 		0.0974
(0.288)
SEC24C 10 (3%) 279 0.137
(0.325) 		0.202
(0.409) 		0.122
(0.312) 		0.00735
(0.0852) 		0.254
(0.46) 		0.0175
(0.127) 		0.334
(0.525) 		0.255
(0.46)
JHDM1D 10 (3%) 279 0.0831
(0.269) 		0.0164
(0.124) 		0.223
(0.425) 		0.0682
(0.248) 		0.0939
(0.283) 		0.00347
(0.0564) 		0.123
(0.312) 		0.142
(0.334)
LRFN3 18 (6%) 271 0.0342
(0.177) 		0.0121
(0.111) 		0.429
(0.605) 		0.0847
(0.269) 		0.199
(0.408) 		0.13
(0.321) 		0.0964
(0.286) 		0.156
(0.356)
GRK4 4 (1%) 285 0.593
(0.727) 		0.211
(0.418) 		0.617
(0.741) 		0.259
(0.464) 		0.53
(0.679) 		0.0131
(0.114) 		0.189
(0.395) 		0.00273
(0.05)
CHST15 13 (4%) 276 0.0143
(0.117) 		0.00728
(0.0851) 		0.278
(0.478) 		0.0754
(0.262) 		0.0815
(0.268) 		0.0589
(0.23) 		0.866
(0.946) 		0.462
(0.627)
CD93 11 (4%) 278 0.204
(0.411) 		0.0296
(0.171) 		0.194
(0.401) 		0.141
(0.332) 		0.0494
(0.213) 		0.0689
(0.249) 		0.25
(0.459) 		0.154
(0.353)
B3GNT5 10 (3%) 279 0.0328
(0.175) 		0.724
(0.836) 		0.498
(0.657) 		0.223
(0.425) 		0.0341
(0.177) 		0.0662
(0.245) 		0.123
(0.312) 		0.107
(0.301)
GON4L 10 (3%) 279 0.0339
(0.177) 		0.00679
(0.0821) 		0.378
(0.561) 		0.395
(0.575) 		0.256
(0.46) 		0.206
(0.413) 		0.593
(0.727) 		0.602
(0.734)
CA2 5 (2%) 284 0.121
(0.312) 		0.236
(0.439) 		0.365
(0.55) 		0.0651
(0.244) 		0.365
(0.55) 		0.0372
(0.185) 		0.112
(0.305) 		0.0151
(0.121)
ZNF711 13 (4%) 276 0.174
(0.375) 		0.00757
(0.0861) 		0.278
(0.478) 		0.521
(0.676) 		0.197
(0.405) 		0.014
(0.116) 		0.215
(0.421) 		0.394
(0.574)
C2ORF42 14 (5%) 275 0.0769
(0.263) 		0.029
(0.171) 		0.47
(0.632) 		0.00161
(0.0354) 		0.698
(0.813) 		0.161
(0.359) 		0.864
(0.945) 		0.743
(0.847)
SEZ6 10 (3%) 279 0.0333
(0.176) 		0.00734
(0.0852) 		1
(1.00) 		0.253
(0.46) 		0.608
(0.734) 		0.0763
(0.262) 		0.321
(0.518) 		0.131
(0.321)
OR4K5 12 (4%) 277 0.542
(0.69) 		0.146
(0.34) 		0.275
(0.477) 		0.0767
(0.263) 		0.116
(0.308) 		0.027
(0.163) 		0.122
(0.312) 		0.0281
(0.168)
MPRIP 14 (5%) 275 0.00085
(0.0239) 		0.166
(0.363) 		0.728
(0.839) 		0.2
(0.408) 		0.232
(0.435) 		0.0151
(0.121) 		0.124
(0.312) 		0.151
(0.347)
WAPAL 13 (4%) 276 0.0219
(0.147) 		0.248
(0.456) 		1
(1.00) 		0.199
(0.408) 		0.251
(0.459) 		0.0199
(0.138) 		0.125
(0.313) 		0.675
(0.791)
KCTD9 10 (3%) 279 0.0336
(0.177) 		0.539
(0.688) 		0.304
(0.51) 		0.454
(0.627) 		0.607
(0.734) 		0.21
(0.418) 		0.044
(0.201) 		0.213
(0.42)
KIAA1539 6 (2%) 283 0.278
(0.479) 		0.0548
(0.225) 		0.363
(0.55) 		0.331
(0.522) 		0.31
(0.515) 		0.0138
(0.115) 		0.0441
(0.201) 		0.113
(0.307)
ITSN2 16 (6%) 273 0.0627
(0.239) 		0.0943
(0.284) 		0.901
(0.978) 		0.423
(0.599) 		0.00288
(0.051) 		0.00334
(0.0558) 		0.125
(0.313) 		0.0562
(0.227)
TNK2 11 (4%) 278 0.12
(0.312) 		0.0357
(0.182) 		0.277
(0.478) 		0.0676
(0.247) 		0.026
(0.16) 		0.208
(0.415) 		0.056
(0.227) 		0.14
(0.331)
HDLBP 24 (8%) 265 0.0582
(0.23) 		0.0714
(0.254) 		0.645
(0.767) 		0.0549
(0.225) 		0.021
(0.143) 		0.00089
(0.0245) 		0.0767
(0.263) 		0.2
(0.408)
NARG2 11 (4%) 278 0.0566
(0.228) 		0.556
(0.701) 		0.829
(0.914) 		0.159
(0.358) 		0.187
(0.394) 		0.011
(0.105) 		0.00855
(0.0917) 		0.11
(0.303)
SLC22A16 11 (4%) 278 0.0261
(0.16) 		0.0795
(0.265) 		0.277
(0.478) 		0.0771
(0.263) 		0.19
(0.396) 		0.0146
(0.119) 		0.0836
(0.269) 		0.302
(0.507)
GLYR1 13 (4%) 276 0.0332
(0.176) 		0.08
(0.266) 		0.71
(0.822) 		0.0765
(0.262) 		0.0227
(0.149) 		0.104
(0.297) 		0.125
(0.313) 		0.461
(0.627)
LRRC43 10 (3%) 279 0.0162
(0.123) 		0.108
(0.301) 		0.707
(0.82) 		0.226
(0.428) 		0.254
(0.46) 		0.00776
(0.0869) 		0.866
(0.946) 		0.304
(0.51)
NEK8 11 (4%) 278 0.0443
(0.201) 		0.909
(0.983) 		1
(1.00) 		0.255
(0.46) 		0.0249
(0.156) 		0.123
(0.312) 		0.322
(0.518) 		0.141
(0.332)
GPATCH4 8 (3%) 281 0.496
(0.655) 		0.134
(0.322) 		0.258
(0.462) 		0.295
(0.497) 		0.117
(0.308) 		0.00247
(0.0464) 		0.0436
(0.201) 		0.238
(0.443)
TSPYL5 9 (3%) 280 0.0667
(0.246) 		0.107
(0.301) 		0.553
(0.699) 		0.0459
(0.204) 		0.0849
(0.269) 		0.0451
(0.201) 		0.0846
(0.269) 		0.0999
(0.293)
NID2 17 (6%) 272 0.00097
(0.0255) 		0.609
(0.734) 		1
(1.00) 		0.135
(0.323) 		0.0773
(0.263) 		0.00014
(0.0093) 		0.124
(0.312) 		0.548
(0.695)
FOXJ1 5 (2%) 284 0.121
(0.312) 		0.21
(0.418) 		0.363
(0.55) 		0.0647
(0.244) 		0.363
(0.55) 		0.0372
(0.185) 		0.188
(0.394) 		0.0484
(0.211)
PTOV1 9 (3%) 280 0.016
(0.123) 		0.427
(0.603) 		0.381
(0.562) 		0.0307
(0.171) 		0.351
(0.543) 		0.0786
(0.264) 		0.331
(0.522) 		0.521
(0.676)
PCCA 8 (3%) 281 0.131
(0.321) 		0.376
(0.56) 		0.758
(0.859) 		0.217
(0.422) 		0.0916
(0.278) 		0.0405
(0.193) 		0.0442
(0.201) 		0.241
(0.447)
WSB2 9 (3%) 280 0.0664
(0.245) 		0.108
(0.301) 		0.0952
(0.284) 		0.257
(0.46) 		0.0831
(0.269) 		0.0477
(0.209) 		0.0234
(0.15) 		0.127
(0.317)
DDX50 11 (4%) 278 0.00541
(0.0719) 		0.0798
(0.266) 		1
(1.00) 		0.224
(0.426) 		0.191
(0.397) 		0.0405
(0.193) 		0.193
(0.401) 		0.166
(0.363)
ZBTB40 10 (3%) 279 0.461
(0.627) 		0.0294
(0.171) 		0.608
(0.734) 		0.362
(0.55) 		0.183
(0.39) 		0.116
(0.308) 		0.0156
(0.122) 		0.0998
(0.292)
C3 25 (9%) 264 0.00451
(0.0652) 		0.0282
(0.168) 		0.707
(0.82) 		0.378
(0.561) 		0.191
(0.397) 		0.233
(0.437) 		0.0609
(0.233) 		0.165
(0.361)
GPX6 4 (1%) 285 0.168
(0.366) 		0.211
(0.418) 		0.172
(0.372) 		0.443
(0.616) 		0.259
(0.464) 		0.00342
(0.0562) 		0.421
(0.599) 		0.0104
(0.104)
ELL2 12 (4%) 277 0.0478
(0.209) 		0.295
(0.497) 		0.376
(0.56) 		0.385
(0.566) 		0.114
(0.308) 		0.417
(0.595) 		0.0499
(0.214) 		0.285
(0.487)
PIK3C2G 10 (3%) 279 0.0934
(0.282) 		0.424
(0.6) 		0.551
(0.697) 		0.0782
(0.264) 		0.256
(0.46) 		0.0705
(0.252) 		0.0154
(0.122) 		0.0305
(0.171)
ATL3 12 (4%) 277 0.00312
(0.0533) 		0.109
(0.302) 		1
(1.00) 		0.223
(0.425) 		0.116
(0.308) 		0.0062
(0.0777) 		0.124
(0.312) 		0.453
(0.625)
THBS1 15 (5%) 274 0.143
(0.336) 		0.0279
(0.167) 		0.561
(0.702) 		0.0865
(0.271) 		0.0807
(0.267) 		0.116
(0.308) 		0.0409
(0.193) 		0.164
(0.361)
RALGDS 13 (4%) 276 0.00153
(0.0344) 		0.25
(0.459) 		0.872
(0.951) 		0.0702
(0.252) 		0.0807
(0.267) 		0.045
(0.201) 		0.0837
(0.269) 		0.459
(0.627)
OSBPL2 7 (2%) 282 1
(1.00) 		0.644
(0.767) 		0.742
(0.847) 		0.658
(0.779) 		0.0439
(0.201) 		0.00829
(0.0897) 		0.385
(0.566) 		0.318
(0.518)
KIAA0226 12 (4%) 277 0.0545
(0.225) 		0.25
(0.459) 		0.862
(0.944) 		0.277
(0.478) 		0.116
(0.308) 		0.0215
(0.145) 		0.0208
(0.142) 		0.0667
(0.246)
ETV1 10 (3%) 279 0.35
(0.543) 		0.198
(0.407) 		0.604
(0.734) 		0.3
(0.505) 		0.0917
(0.278) 		0.268
(0.472) 		0.0101
(0.102) 		0.048
(0.21)
IBTK 18 (6%) 271 0.00131
(0.0319) 		0.0674
(0.247) 		0.59
(0.727) 		0.203
(0.41) 		0.169
(0.367) 		0.0246
(0.155) 		0.671
(0.788) 		0.687
(0.802)
ARID5B 11 (4%) 278 0.056
(0.227) 		0.219
(0.423) 		1
(1.00) 		0.52
(0.676) 		0.0263
(0.161) 		0.125
(0.313) 		0.0234
(0.15) 		0.105
(0.298)
EML3 10 (3%) 279 0.46
(0.627) 		0.909
(0.983) 		0.707
(0.82) 		0.602
(0.734) 		0.0342
(0.177) 		0.216
(0.422) 		0.00789
(0.0874) 		0.107
(0.301)
LSS 9 (3%) 280 0.0168
(0.125) 		0.0168
(0.125) 		0.119
(0.312) 		0.0785
(0.264) 		0.353
(0.544) 		0.0763
(0.262) 		0.322
(0.518) 		0.38
(0.562)
SLC7A13 9 (3%) 280 0.0165
(0.124) 		0.0166
(0.125) 		0.825
(0.912) 		0.338
(0.529) 		0.351
(0.543) 		0.159
(0.358) 		0.591
(0.727) 		0.323
(0.518)
AHI1 9 (3%) 280 0.016
(0.123) 		0.374
(0.559) 		1
(1.00) 		0.41
(0.588) 		0.0835
(0.269) 		0.0135
(0.115) 		0.125
(0.313) 		0.107
(0.301)
CLSTN1 11 (4%) 278 0.084
(0.269) 		0.723
(0.836) 		0.844
(0.93) 		0.601
(0.733) 		0.0482
(0.21) 		0.121
(0.312) 		0.00999
(0.102) 		0.121
(0.312)
NUAK1 16 (6%) 273 0.538
(0.687) 		0.0289
(0.171) 		0.56
(0.702) 		0.0856
(0.27) 		0.668
(0.785) 		0.139
(0.329) 		0.0295
(0.171) 		0.204
(0.411)
BZRAP1 46 (16%) 243 0.305
(0.511) 		0.0843
(0.269) 		0.271
(0.475) 		0.0325
(0.175) 		0.68
(0.795) 		0.543
(0.691) 		0.885
(0.962) 		0.965
(1.00)
KRAS 28 (10%) 261 0.0616
(0.235) 		0.602
(0.734) 		0.862
(0.944) 		0.185
(0.393) 		0.355
(0.545) 		0.0329
(0.175) 		0.372
(0.556) 		1
(1.00)
SMAD4 24 (8%) 265 0.0841
(0.269) 		0.503
(0.66) 		1
(1.00) 		0.0264
(0.161) 		0.227
(0.429) 		0.281
(0.481) 		0.231
(0.434) 		0.628
(0.751)
CTCF 18 (6%) 271 0.0008
(0.0231) 		0.198
(0.407) 		0.74
(0.846) 		0.0972
(0.287) 		0.172
(0.371) 		0.0581
(0.23) 		0.366
(0.55) 		0.231
(0.434)
WBP1 8 (3%) 281 0.203
(0.411) 		0.421
(0.598) 		0.604
(0.734) 		0.362
(0.55) 		0.0907
(0.277) 		0.00792
(0.0874) 		0.122
(0.312) 		0.163
(0.359)
C1QTNF5 8 (3%) 281 0.132
(0.322) 		0.109
(0.301) 		0.244
(0.45) 		0.22
(0.424) 		0.445
(0.617) 		0.00649
(0.0796) 		0.735
(0.844) 		1
(1.00)
AOC3 13 (4%) 276 0.69
(0.805) 		0.105
(0.298) 		0.484
(0.642) 		0.508
(0.665) 		0.401
(0.581) 		0.0959
(0.285) 		0.503
(0.661) 		0.0389
(0.19)
GBP7 9 (3%) 280 0.0162
(0.123) 		0.135
(0.324) 		1
(1.00) 		0.361
(0.55) 		1
(1.00) 		0.28
(0.481) 		1
(1.00) 		0.918
(0.992)
DDC 9 (3%) 280 0.0664
(0.245) 		1
(1.00) 		0.784
(0.883) 		0.581
(0.721) 		0.101
(0.295) 		0.0136
(0.115) 		0.331
(0.522) 		0.241
(0.447)
GXYLT1 12 (4%) 277 0.0119
(0.11) 		0.177
(0.381) 		0.729
(0.839) 		0.14
(0.331) 		0.326
(0.521) 		0.13
(0.321) 		0.566
(0.704) 		0.512
(0.67)
HLA-C 13 (4%) 276 0.00899
(0.0946) 		0.424
(0.6) 		0.484
(0.642) 		0.113
(0.307) 		0.199
(0.408) 		0.352
(0.543) 		0.124
(0.312) 		0.46
(0.627)
PRSS36 11 (4%) 278 0.0277
(0.166) 		0.054
(0.225) 		1
(1.00) 		0.254
(0.46) 		0.894
(0.971) 		0.0945
(0.284) 		0.816
(0.907) 		0.645
(0.768)
C9ORF131 13 (4%) 276 0.0137
(0.115) 		0.0791
(0.265) 		0.708
(0.82) 		0.0755
(0.262) 		0.51
(0.667) 		0.105
(0.299) 		0.502
(0.659) 		0.454
(0.627)
IRF2 14 (5%) 275 0.0376
(0.186) 		0.295
(0.498) 		1
(1.00) 		0.766
(0.865) 		0.13
(0.321) 		0.0567
(0.228) 		0.753
(0.857) 		0.383
(0.564)
SPTY2D1 15 (5%) 274 0.309
(0.515) 		0.454
(0.627) 		0.163
(0.359) 		0.117
(0.308) 		0.166
(0.363) 		0.0585
(0.23) 		0.023
(0.149) 		0.273
(0.476)
PRRG3 8 (3%) 281 0.031
(0.171) 		0.746
(0.85) 		0.401
(0.581) 		0.687
(0.802) 		0.0916
(0.278) 		0.132
(0.322) 		0.112
(0.305) 		0.318
(0.518)
TP53BP2 14 (5%) 275 0.176
(0.378) 		0.0551
(0.225) 		0.0975
(0.288) 		0.0632
(0.24) 		0.0716
(0.255) 		0.00552
(0.0723) 		0.194
(0.401) 		0.0592
(0.23)
BCOR 21 (7%) 268 0.00038
(0.0153) 		0.201
(0.409) 		1
(1.00) 		0.548
(0.695) 		0.198
(0.407) 		0.0796
(0.265) 		0.474
(0.636) 		0.316
(0.517)
RALGAPB 18 (6%) 271 0.0306
(0.171) 		0.0994
(0.292) 		0.625
(0.748) 		0.322
(0.518) 		0.456
(0.627) 		0.144
(0.337) 		0.264
(0.468) 		0.309
(0.515)
SLC10A6 8 (3%) 281 0.0597
(0.231) 		0.376
(0.56) 		1
(1.00) 		0.257
(0.461) 		0.0902
(0.277) 		0.00748
(0.0857) 		0.0545
(0.225) 		0.215
(0.422)
ARHGAP5 17 (6%) 272 0.0106
(0.104) 		0.0759
(0.262) 		0.208
(0.415) 		0.0735
(0.258) 		0.427
(0.603) 		0.0788
(0.265) 		0.565
(0.703) 		0.656
(0.777)
ZNF48 10 (3%) 279 0.034
(0.177) 		0.109
(0.302) 		0.526
(0.678) 		0.0766
(0.262) 		0.253
(0.46) 		0.0876
(0.272) 		0.329
(0.522) 		0.521
(0.677)
LEMD1 4 (1%) 285 0.432
(0.606) 		0.207
(0.414) 		0.618
(0.742) 		0.26
(0.465) 		0.527
(0.678) 		0.0132
(0.114) 		0.187
(0.394) 		0.217
(0.422)
CABP5 5 (2%) 284 0.52
(0.676) 		0.212
(0.42) 		0.436
(0.611) 		0.132
(0.322) 		1
(1.00) 		0.0173
(0.126) 		0.734
(0.844) 		0.32
(0.518)
PHACTR4 8 (3%) 281 0.562
(0.702) 		0.0172
(0.126) 		0.117
(0.308) 		0.232
(0.435) 		0.444
(0.616) 		0.0543
(0.225) 		0.319
(0.518) 		0.46
(0.627)
RBM43 9 (3%) 280 0.82
(0.908) 		0.324
(0.52) 		0.0362
(0.183) 		0.341
(0.532) 		0.174
(0.376) 		0.593
(0.727) 		0.33
(0.522) 		0.227
(0.429)
CDC25C 13 (4%) 276 0.0775
(0.263) 		0.0727
(0.256) 		0.277
(0.478) 		0.0171
(0.126) 		0.252
(0.46) 		0.496
(0.655) 		0.0896
(0.276) 		0.658
(0.779)
GPR161 12 (4%) 277 0.0357
(0.182) 		0.63
(0.753) 		0.498
(0.657) 		0.225
(0.427) 		0.328
(0.522) 		0.118
(0.309) 		0.318
(0.518) 		0.383
(0.564)
CTSC 10 (3%) 279 0.0118
(0.11) 		0.055
(0.225) 		1
(1.00) 		0.338
(0.53) 		0.606
(0.734) 		0.152
(0.349) 		0.816
(0.907) 		0.52
(0.676)
RGL2 12 (4%) 277 0.0264
(0.161) 		0.146
(0.341) 		0.224
(0.426) 		0.067
(0.247) 		0.252
(0.459) 		0.256
(0.46) 		0.0579
(0.23) 		0.275
(0.477)
ZFC3H1 15 (5%) 274 0.151
(0.348) 		0.336
(0.528) 		0.811
(0.907) 		0.337
(0.529) 		0.837
(0.923) 		0.0223
(0.147) 		0.117
(0.308) 		0.0587
(0.23)
ZKSCAN5 9 (3%) 280 0.0166
(0.125) 		0.886
(0.963) 		0.378
(0.561) 		0.158
(0.358) 		0.352
(0.543) 		0.228
(0.43) 		0.321
(0.518) 		0.459
(0.627)
RNF145 18 (6%) 271 0.0222
(0.147) 		0.0995
(0.292) 		1
(1.00) 		0.306
(0.513) 		0.455
(0.627) 		0.0681
(0.248) 		0.159
(0.358) 		0.427
(0.603)
SNAPC1 7 (2%) 282 0.131
(0.321) 		0.0318
(0.172) 		0.605
(0.734) 		0.364
(0.55) 		0.136
(0.324) 		0.144
(0.338) 		0.334
(0.525) 		0.212
(0.42)
FASTKD1 11 (4%) 278 0.0269
(0.163) 		0.147
(0.341) 		0.827
(0.913) 		0.338
(0.529) 		0.188
(0.395) 		0.331
(0.522) 		0.0841
(0.269) 		0.132
(0.321)
SLC27A3 9 (3%) 280 0.133
(0.322) 		0.376
(0.56) 		0.528
(0.679) 		0.0776
(0.263) 		0.353
(0.543) 		0.0128
(0.112) 		0.814
(0.907) 		0.253
(0.46)
C13ORF33 7 (2%) 282 0.128
(0.319) 		0.0306
(0.171) 		0.367
(0.55) 		0.0651
(0.244) 		0.59
(0.727) 		0.459
(0.627) 		0.331
(0.522) 		0.522
(0.677)
DYRK4 9 (3%) 280 0.066
(0.245) 		0.0302
(0.171) 		0.826
(0.912) 		0.159
(0.358) 		0.354
(0.544) 		0.36
(0.55) 		0.0547
(0.225) 		0.217
(0.422)
TNFRSF9 10 (3%) 279 0.0346
(0.177) 		0.422
(0.599) 		0.828
(0.914) 		0.392
(0.573) 		0.254
(0.46) 		0.0715
(0.254) 		0.5
(0.658) 		0.0679
(0.247)
RHOQ 5 (2%) 284 0.122
(0.312) 		0.392
(0.573) 		1
(1.00) 		0.331
(0.522) 		0.363
(0.55) 		0.681
(0.796) 		0.317
(0.517) 		0.0175
(0.127)
STAT5B 12 (4%) 277 0.123
(0.312) 		0.166
(0.363) 		0.379
(0.561) 		0.0306
(0.171) 		0.324
(0.52) 		0.131
(0.321) 		0.194
(0.401) 		0.546
(0.694)
CFI 12 (4%) 277 0.121
(0.312) 		0.297
(0.499) 		0.479
(0.641) 		0.0231
(0.149) 		0.733
(0.843) 		0.12
(0.312) 		0.5
(0.658) 		0.604
(0.734)
FERMT2 7 (2%) 282 0.127
(0.317) 		0.108
(0.301) 		0.757
(0.858) 		0.218
(0.422) 		0.137
(0.325) 		0.0829
(0.269) 		0.114
(0.307) 		0.0161
(0.123)
NOX5 14 (5%) 275 0.0458
(0.203) 		0.34
(0.532) 		1
(1.00) 		0.159
(0.358) 		0.071
(0.253) 		0.0775
(0.263) 		0.195
(0.402) 		0.0661
(0.245)
SF3B2 17 (6%) 272 0.00113
(0.0284) 		0.357
(0.548) 		0.313
(0.516) 		0.0576
(0.23) 		0.429
(0.605) 		0.132
(0.321) 		0.474
(0.636) 		0.273
(0.476)
DDX60 10 (3%) 279 0.0113
(0.107) 		0.666
(0.784) 		0.783
(0.882) 		0.582
(0.721) 		0.255
(0.46) 		0.0657
(0.244) 		0.284
(0.486) 		0.674
(0.79)
ISG20L2 7 (2%) 282 0.0591
(0.23) 		0.513
(0.671) 		0.755
(0.858) 		0.221
(0.425) 		0.135
(0.323) 		0.083
(0.269) 		0.0229
(0.149) 		0.163
(0.359)
CDKN2A 12 (4%) 277 0.925
(0.997) 		0.301
(0.505) 		0.183
(0.391) 		0.0969
(0.287) 		0.251
(0.459) 		0.672
(0.788) 		0.0576
(0.23) 		0.0288
(0.171)
RNF111 10 (3%) 279 0.0338
(0.177) 		0.466
(0.628) 		0.676
(0.791) 		0.456
(0.627) 		0.255
(0.46) 		0.204
(0.412) 		0.0719
(0.255) 		0.185
(0.394)
ABCA6 13 (4%) 276 0.0128
(0.112) 		0.0787
(0.265) 		0.873
(0.951) 		0.07
(0.252) 		0.252
(0.459) 		0.209
(0.416) 		0.358
(0.549) 		0.748
(0.852)
IGFBP7 4 (1%) 285 0.428
(0.604) 		0.395
(0.575) 		0.617
(0.741) 		0.26
(0.464) 		0.527
(0.678) 		0.0128
(0.112) 		0.318
(0.518) 		0.149
(0.345)
RRS1 7 (2%) 282 0.515
(0.672) 		0.108
(0.301) 		0.159
(0.358) 		0.0452
(0.201) 		0.135
(0.323) 		0.159
(0.358) 		0.286
(0.488) 		0.243
(0.449)
WNK4 21 (7%) 268 0.00127
(0.031) 		0.0765
(0.262) 		1
(1.00) 		0.181
(0.388) 		0.0637
(0.242) 		0.22
(0.424) 		0.0779
(0.263) 		0.32
(0.518)
RAD51AP2 12 (4%) 277 0.27
(0.474) 		0.61
(0.734) 		0.71
(0.822) 		0.325
(0.521) 		0.0349
(0.179) 		0.368
(0.551) 		0.124
(0.312) 		0.105
(0.298)
PIGB 10 (3%) 279 0.0114
(0.107) 		0.218
(0.422) 		0.827
(0.914) 		0.458
(0.627) 		0.256
(0.46) 		0.0895
(0.276) 		1
(1.00) 		0.8
(0.898)
OGDH 9 (3%) 280 0.483
(0.642) 		0.819
(0.907) 		0.828
(0.914) 		0.337
(0.529) 		0.478
(0.641) 		0.0278
(0.167) 		1
(1.00) 		0.137
(0.325)
ELF3 11 (4%) 278 0.0836
(0.269) 		0.424
(0.6) 		0.5
(0.658) 		0.0608
(0.233) 		0.189
(0.395) 		0.00095
(0.0253) 		0.321
(0.518) 		0.111
(0.304)
PODN 13 (4%) 276 0.0243
(0.153) 		0.556
(0.701) 		0.872
(0.951) 		0.406
(0.586) 		0.568
(0.706) 		0.123
(0.312) 		0.404
(0.583) 		0.678
(0.793)
ERBB3 31 (11%) 258 0.00702
(0.0835) 		0.526
(0.678) 		0.642
(0.764) 		0.242
(0.447) 		0.337
(0.529) 		0.251
(0.459) 		0.104
(0.298) 		0.322
(0.518)
KBTBD10 7 (2%) 282 0.872
(0.951) 		0.135
(0.323) 		0.0942
(0.284) 		0.0465
(0.205) 		0.205
(0.412) 		0.147
(0.341) 		0.0722
(0.256) 		0.161
(0.359)
PLAU 7 (2%) 282 0.058
(0.23) 		0.814
(0.907) 		0.462
(0.627) 		0.583
(0.722) 		0.135
(0.323) 		0.0301
(0.171) 		0.189
(0.395) 		0.214
(0.421)
ALG10 11 (4%) 278 0.0271
(0.164) 		0.0798
(0.265) 		1
(1.00) 		0.598
(0.731) 		0.551
(0.697) 		0.253
(0.46) 		0.59
(0.727) 		0.606
(0.734)
FZD3 10 (3%) 279 0.0836
(0.269) 		0.11
(0.303) 		0.461
(0.627) 		0.579
(0.719) 		0.0342
(0.177) 		0.0649
(0.244) 		0.0844
(0.269) 		0.107
(0.301)
ZDHHC7 6 (2%) 283 0.103
(0.297) 		0.11
(0.303) 		0.244
(0.45) 		0.0315
(0.172) 		0.309
(0.515) 		0.17
(0.369) 		0.111
(0.304) 		0.224
(0.426)
PANK1 8 (3%) 281 0.0298
(0.171) 		0.746
(0.85) 		0.421
(0.598) 		0.405
(0.585) 		0.443
(0.616) 		0.89
(0.967) 		0.328
(0.522) 		0.418
(0.597)
C11ORF9 8 (3%) 281 0.0311
(0.171) 		0.859
(0.941) 		0.818
(0.907) 		0.408
(0.587) 		0.444
(0.616) 		0.299
(0.503) 		0.332
(0.523) 		0.8
(0.898)
TRIP10 8 (3%) 281 0.13
(0.321) 		0.422
(0.599) 		0.259
(0.464) 		0.255
(0.46) 		0.0911
(0.278) 		0.0845
(0.269) 		0.0433
(0.2) 		0.213
(0.421)
PHACTR2 13 (4%) 276 0.0595
(0.231) 		0.00975
(0.1) 		0.484
(0.642) 		0.115
(0.308) 		0.255
(0.46) 		0.487
(0.645) 		0.777
(0.876) 		0.431
(0.606)
C16ORF7 14 (5%) 275 0.0137
(0.115) 		0.166
(0.363) 		0.87
(0.949) 		0.407
(0.586) 		0.232
(0.435) 		0.569
(0.708) 		0.122
(0.312) 		0.303
(0.509)
ZNF124 9 (3%) 280 0.065
(0.244) 		0.539
(0.688) 		0.526
(0.678) 		0.0779
(0.263) 		0.0819
(0.269) 		0.0129
(0.113) 		0.482
(0.642) 		0.316
(0.517)
GLT8D1 8 (3%) 281 0.0309
(0.171) 		0.465
(0.628) 		0.816
(0.907) 		0.527
(0.678) 		0.0908
(0.277) 		0.086
(0.27) 		0.484
(0.642) 		0.186
(0.394)
POP1 19 (7%) 270 0.551
(0.697) 		0.453
(0.626) 		0.916
(0.99) 		0.535
(0.684) 		0.0993
(0.292) 		0.0195
(0.136) 		0.265
(0.468) 		0.245
(0.451)
ASPN 6 (2%) 283 0.103
(0.297) 		0.108
(0.301) 		0.242
(0.448) 		0.0315
(0.172) 		0.309
(0.515) 		0.234
(0.437) 		0.102
(0.296) 		0.276
(0.478)
KIAA1009 15 (5%) 274 0.285
(0.487) 		0.04
(0.192) 		0.263
(0.467) 		0.0738
(0.259) 		0.381
(0.562) 		0.0727
(0.256) 		0.159
(0.358) 		0.164
(0.36)
YBX2 4 (1%) 285 0.522
(0.677) 		0.39
(0.572) 		0.616
(0.741) 		0.264
(0.467) 		0.527
(0.678) 		0.0128
(0.112) 		0.314
(0.517) 		0.15
(0.346)
PIK3R3 8 (3%) 281 0.56
(0.702) 		0.859
(0.941) 		0.288
(0.489) 		0.188
(0.395) 		1
(1.00) 		0.0175
(0.127) 		0.286
(0.487) 		0.904
(0.979)
OR5M3 15 (5%) 274 0.154
(0.353) 		0.266
(0.47) 		0.0708
(0.253) 		0.0146
(0.119) 		0.0794
(0.265) 		0.155
(0.355) 		0.116
(0.308) 		0.181
(0.387)
PKN2 10 (3%) 279 0.0333
(0.176) 		0.295
(0.498) 		0.524
(0.678) 		0.254
(0.46) 		0.606
(0.734) 		0.0878
(0.273) 		0.756
(0.858) 		0.0942
(0.284)
AQP8 11 (4%) 278 0.0559
(0.227) 		0.296
(0.498) 		0.379
(0.561) 		0.0303
(0.171) 		0.554
(0.699) 		0.16
(0.358) 		0.323
(0.519) 		0.385
(0.566)
ANKRD40 5 (2%) 284 1
(1.00) 		0.817
(0.907) 		0.264
(0.468) 		0.0469
(0.206) 		0.786
(0.885) 		0.635
(0.758) 		1
(1.00) 		0.32
(0.518)
CASP8 18 (6%) 271 0.0018
(0.038) 		0.453
(0.625) 		1
(1.00) 		0.087
(0.272) 		0.0605
(0.233) 		0.0926
(0.28) 		0.16
(0.359) 		0.417
(0.595)
NEK7 4 (1%) 285 0.311
(0.515) 		0.276
(0.478) 		0.435
(0.609) 		0.131
(0.321) 		0.527
(0.678) 		0.0545
(0.225) 		0.315
(0.517) 		0.0175
(0.127)
MAMSTR 4 (1%) 285 0.313
(0.516) 		0.271
(0.475) 		0.618
(0.742) 		0.263
(0.467) 		0.528
(0.679) 		0.0126
(0.112) 		0.312
(0.516) 		0.15
(0.345)
PFKP 13 (4%) 276 0.0776
(0.263) 		0.057
(0.229) 		0.87
(0.95) 		0.407
(0.586) 		0.0222
(0.147) 		0.102
(0.296) 		0.0539
(0.225) 		0.228
(0.43)
TMEM63A 11 (4%) 278 0.00605
(0.0768) 		0.108
(0.301) 		0.197
(0.404) 		0.157
(0.358) 		0.191
(0.397) 		0.149
(0.343) 		0.321
(0.518) 		0.175
(0.376)
OPLAH 14 (5%) 275 0.0368
(0.184) 		0.0719
(0.255) 		0.481
(0.642) 		0.115
(0.308) 		0.397
(0.577) 		0.199
(0.408) 		0.146
(0.341) 		0.601
(0.734)
MYOCD 13 (4%) 276 0.00143
(0.0333) 		0.608
(0.734) 		0.354
(0.544) 		0.316
(0.517) 		0.566
(0.705) 		0.424
(0.6) 		0.123
(0.312) 		0.148
(0.342)
MASTL 11 (4%) 278 0.0614
(0.235) 		0.506
(0.664) 		0.591
(0.727) 		0.927
(0.999) 		0.721
(0.833) 		0.0496
(0.213) 		0.143
(0.336) 		0.187
(0.394)
KBTBD6 13 (4%) 276 0.0599
(0.231) 		0.447
(0.62) 		0.375
(0.56) 		0.274
(0.477) 		0.252
(0.459) 		0.0445
(0.201) 		0.274
(0.477) 		0.42
(0.598)
PLA2G15 9 (3%) 280 0.106
(0.299) 		0.517
(0.674) 		0.16
(0.359) 		0.0138
(0.115) 		0.477
(0.64) 		0.409
(0.588) 		0.329
(0.522) 		0.52
(0.676)
TRUB1 9 (3%) 280 0.106
(0.301) 		0.424
(0.6) 		0.38
(0.562) 		0.144
(0.337) 		0.102
(0.296) 		0.359
(0.55) 		0.0155
(0.122) 		0.11
(0.303)
PLAG1 11 (4%) 278 0.00591
(0.0755) 		0.667
(0.785) 		1
(1.00) 		0.227
(0.429) 		0.189
(0.395) 		0.0946
(0.284) 		0.123
(0.312) 		0.321
(0.518)
RPGR 8 (3%) 281 0.133
(0.322) 		0.0308
(0.171) 		0.16
(0.359) 		0.163
(0.359) 		0.443
(0.616) 		0.125
(0.313) 		0.385
(0.565) 		1
(1.00)
USP8 7 (2%) 282 0.338
(0.529) 		0.212
(0.42) 		0.159
(0.358) 		0.0145
(0.119) 		0.137
(0.325) 		0.0827
(0.269) 		0.735
(0.844) 		0.215
(0.421)
MYB 6 (2%) 283 0.276
(0.478) 		0.21
(0.418) 		0.756
(0.858) 		0.22
(0.424) 		0.309
(0.515) 		0.0138
(0.115)
ART1 7 (2%) 282 0.339
(0.531) 		0.233
(0.436) 		0.162
(0.359) 		0.0442
(0.201) 		0.135
(0.323) 		0.146
(0.34) 		0.113
(0.307) 		0.222
(0.425)
TIMM44 5 (2%) 284 0.122
(0.312) 		0.111
(0.305) 		0.365
(0.55) 		0.0655
(0.244) 		0.364
(0.55) 		0.162
(0.359) 		0.103
(0.297) 		0.0471
(0.207)
ELOVL2 7 (2%) 282 0.515
(0.672) 		0.538
(0.687) 		0.403
(0.583) 		0.77
(0.869) 		0.204
(0.412) 		0.38
(0.562) 		0.018
(0.129) 		0.0614
(0.235)
CROT 11 (4%) 278 0.0269
(0.163) 		0.295
(0.498) 		0.279
(0.479) 		0.0763
(0.262) 		0.189
(0.395) 		0.122
(0.312) 		0.276
(0.478) 		0.255
(0.46)
ABLIM2 11 (4%) 278 0.0317
(0.172) 		0.724
(0.836) 		0.195
(0.402) 		0.158
(0.358) 		0.554
(0.699) 		0.123
(0.312) 		0.195
(0.402) 		0.531
(0.681)
LMTK3 8 (3%) 281 0.0583
(0.23) 		0.761
(0.861) 		0.527
(0.678) 		0.223
(0.425) 		0.116
(0.308) 		0.2
(0.408) 		0.0389
(0.19) 		0.0987
(0.291)
GPATCH2 7 (2%) 282 0.0598
(0.231) 		0.466
(0.628) 		0.756
(0.858) 		0.219
(0.422) 		0.589
(0.727) 		0.0247
(0.155) 		0.485
(0.643) 		0.904
(0.979)
CPB2 9 (3%) 280 0.0303
(0.171) 		0.216
(0.422) 		1
(1.00) 		0.359
(0.55) 		0.354
(0.544) 		0.0801
(0.266) 		0.504
(0.661) 		0.608
(0.734)
THEMIS 8 (3%) 281 0.0305
(0.171) 		0.465
(0.628) 		0.263
(0.467) 		0.857
(0.941) 		0.444
(0.616) 		0.0544
(0.225) 		0.0726
(0.256) 		0.222
(0.425)
EGR1 10 (3%) 279 0.0115
(0.108) 		0.108
(0.301) 		0.0951
(0.284) 		0.079
(0.265) 		0.253
(0.46) 		0.0594
(0.231) 		0.0842
(0.269) 		0.461
(0.627)
C7ORF49 7 (2%) 282 0.13
(0.321) 		0.0308
(0.171) 		0.607
(0.734) 		0.162
(0.359) 		0.136
(0.324) 		0.148
(0.342) 		0.187
(0.394) 		0.456
(0.627)
HCRTR2 9 (3%) 280 0.131
(0.321) 		0.878
(0.956) 		0.676
(0.791) 		1
(1.00) 		0.77
(0.869) 		0.363
(0.55) 		0.0437
(0.201) 		0.214
(0.421)
C7ORF58 15 (5%) 274 0.125
(0.313) 		0.00588
(0.0752) 		0.377
(0.56) 		0.143
(0.335) 		0.415
(0.593) 		0.15
(0.346) 		0.267
(0.47) 		0.34
(0.531)
PTPN4 9 (3%) 280 0.0307
(0.171) 		0.11
(0.303) 		0.607
(0.734) 		0.162
(0.359) 		0.084
(0.269) 		0.0784
(0.264) 		0.0723
(0.256) 		0.223
(0.425)
CTSD 7 (2%) 282 0.874
(0.952) 		0.515
(0.672) 		0.606
(0.734) 		0.164
(0.36) 		0.591
(0.727) 		0.0369
(0.184) 		0.123
(0.312) 		0.321
(0.518)
EOMES 8 (3%) 281 0.0309
(0.171) 		0.464
(0.628) 		0.375
(0.559) 		0.583
(0.722) 		0.865
(0.945) 		0.489
(0.647) 		1
(1.00) 		1
(1.00)
AVPR1A 12 (4%) 277 0.0253
(0.157) 		0.339
(0.53) 		0.379
(0.561) 		0.141
(0.332) 		0.325
(0.521) 		0.128
(0.318) 		0.0572
(0.229) 		0.516
(0.672)
ZNF701 8 (3%) 281 0.564
(0.702) 		1
(1.00) 		0.56
(0.702) 		1
(1.00) 		0.741
(0.847) 		1
(1.00) 		0.0326
(0.175) 		0.877
(0.954)
LIAS 5 (2%) 284 0.12
(0.312) 		0.11
(0.303) 		0.367
(0.55) 		0.0638
(0.242) 		0.366
(0.55) 		0.0369
(0.184) 		0.186
(0.394) 		0.214
(0.421)
SMARCB1 11 (4%) 278 0.0439
(0.201) 		0.11
(0.302) 		1
(1.00) 		0.256
(0.46) 		0.719
(0.831) 		0.227
(0.429) 		0.814
(0.907) 		0.648
(0.77)
CEP120 10 (3%) 279 0.0116
(0.109) 		0.42
(0.598) 		1
(1.00) 		0.256
(0.46) 		0.255
(0.46) 		0.153
(0.35) 		0.124
(0.312) 		0.46
(0.627)
SPATA5L1 7 (2%) 282 0.343
(0.535) 		0.0305
(0.171) 		0.367
(0.55) 		0.855
(0.94) 		0.712
(0.823) 		0.457
(0.627) 		0.436
(0.611) 		0.802
(0.899)
TNS4 12 (4%) 277 0.0747
(0.261) 		0.651
(0.773) 		0.411
(0.589) 		0.51
(0.667) 		0.253
(0.46) 		0.793
(0.891) 		0.049
(0.212) 		0.478
(0.64)
TRAM1L1 13 (4%) 276 0.294
(0.496) 		0.00419
(0.0624) 		0.872
(0.951) 		0.508
(0.665) 		0.509
(0.667) 		0.277
(0.478) 		0.124
(0.313) 		0.697
(0.812)
SUCLG2 5 (2%) 284 0.12
(0.312) 		0.815
(0.907) 		0.121
(0.312) 		0.559
(0.702) 		0.365
(0.55) 		0.349
(0.543) 		0.188
(0.394) 		0.0482
(0.21)
OGFRL1 10 (3%) 279 0.191
(0.398) 		0.133
(0.322) 		0.278
(0.479) 		0.0676
(0.247) 		0.0948
(0.284) 		0.00049
(0.0175) 		0.817
(0.907) 		0.157
(0.358)
C10ORF120 5 (2%) 284 0.264
(0.467) 		0.391
(0.573) 		0.364
(0.55) 		0.00212
(0.0418)
CSNK1G3 7 (2%) 282 0.0583
(0.23) 		0.375
(0.56) 		1
(1.00) 		0.33
(0.522) 		0.59
(0.727) 		0.0255
(0.158) 		0.33
(0.522) 		0.255
(0.46)
MZF1 10 (3%) 279 0.0117
(0.109) 		0.554
(0.699) 		0.818
(0.907) 		0.626
(0.748) 		0.605
(0.734) 		0.34
(0.531) 		0.124
(0.313) 		0.358
(0.549)
LUC7L3 6 (2%) 283 0.738
(0.845) 		0.136
(0.324) 		0.242
(0.448) 		0.0321
(0.174) 		0.201
(0.409) 		0.0723
(0.256) 		0.33
(0.522) 		0.113
(0.307)
PIWIL2 6 (2%) 283 0.103
(0.296) 		0.467
(0.628) 		0.74
(0.847) 		0.855
(0.939) 		0.308
(0.515) 		0.0135
(0.115) 		0.112
(0.306) 		0.0814
(0.268)
TMEM79 6 (2%) 283 0.103
(0.296) 		0.11
(0.303) 		1
(1.00) 		0.33
(0.522) 		0.307
(0.514) 		0.17
(0.369) 		0.187
(0.394) 		0.0486
(0.211)
HIST1H1B 9 (3%) 280 0.276
(0.478) 		0.0759
(0.262) 		0.528
(0.679) 		0.223
(0.425) 		0.102
(0.296) 		0.523
(0.678) 		0.0382
(0.188) 		0.154
(0.352)
FGF13 9 (3%) 280 0.0157
(0.122) 		0.217
(0.422) 		0.551
(0.697) 		0.458
(0.627) 		0.101
(0.295) 		0.0784
(0.264) 		0.592
(0.727) 		0.128
(0.319)
EAF2 7 (2%) 282 0.0599
(0.231) 		0.108
(0.301) 		0.758
(0.859) 		0.219
(0.423) 		0.134
(0.323) 		0.029
(0.171) 		0.186
(0.394) 		0.458
(0.627)
PHF20 11 (4%) 278 0.542
(0.69) 		1
(1.00) 		0.225
(0.427) 		0.0306
(0.171) 		0.288
(0.489) 		0.328
(0.522) 		0.0839
(0.269) 		0.107
(0.301)
NT5DC1 6 (2%) 283 0.103
(0.297) 		0.378
(0.561) 		1
(1.00) 		0.609
(0.734) 		0.31
(0.515) 		0.0711
(0.254) 		0.0441
(0.201) 		0.24
(0.445)
DUSP9 5 (2%) 284 0.711
(0.823) 		0.273
(0.476) 		0.116
(0.308) 		0.233
(0.437) 		0.0438
(0.201) 		0.868
(0.948)
TCEAL5 6 (2%) 283 0.275
(0.477) 		0.747
(0.851) 		0.403
(0.582) 		0.61
(0.734) 		0.813
(0.907) 		0.696
(0.81) 		0.0452
(0.201) 		0.213
(0.42)
GANAB 10 (3%) 279 0.0116
(0.109) 		0.078
(0.263) 		1
(1.00) 		0.365
(0.55) 		0.606
(0.734) 		0.0866
(0.271) 		0.196
(0.403) 		0.267
(0.471)
PPARGC1B 7 (2%) 282 0.131
(0.321) 		0.0554
(0.226) 		0.607
(0.734) 		0.161
(0.359) 		0.136
(0.324) 		0.0826
(0.269) 		0.0431
(0.2) 		0.112
(0.306)
BCKDHA 12 (4%) 277 0.0565
(0.228) 		0.472
(0.634) 		1
(1.00) 		0.226
(0.428) 		0.251
(0.459) 		0.0164
(0.124) 		0.123
(0.312) 		0.743
(0.847)
TBC1D23 4 (1%) 285 0.31
(0.515) 		0.27
(0.474) 		0.616
(0.74) 		0.261
(0.465) 		1
(1.00) 		0.0323
(0.174) 		1
(1.00) 		0.0679
(0.247)
IK 6 (2%) 283 0.408
(0.587) 		0.641
(0.764) 		0.757
(0.858) 		0.494
(0.653) 		0.655
(0.777) 		0.043
(0.2) 		1
(1.00) 		1
(1.00)
LCE1A 3 (1%) 286 0.16
(0.359) 		1
(1.00) 		1
(1.00) 		0.625
(0.748) 		0.166
(0.363) 		0.0366
(0.184) 		0.422
(0.599) 		0.118
(0.309)
TAF6 12 (4%) 277 0.0753
(0.262) 		0.558
(0.702) 		0.481
(0.642) 		0.508
(0.665) 		0.0417
(0.194) 		0.149
(0.345) 		0.355
(0.545) 		0.378
(0.561)
TRIM27 5 (2%) 284 0.12
(0.312) 		0.208
(0.416) 		0.368
(0.551) 		0.332
(0.522) 		0.364
(0.55) 		0.00215
(0.0421) 		1
(1.00) 		0.217
(0.422)
MMP3 8 (3%) 281 0.132
(0.322) 		0.668
(0.785) 		0.42
(0.598) 		0.407
(0.586) 		0.0921
(0.279) 		0.0871
(0.272) 		0.0221
(0.147) 		0.162
(0.359)
IDE 9 (3%) 280 0.107
(0.301) 		0.515
(0.672) 		0.16
(0.358) 		0.0148
(0.119) 		0.481
(0.642) 		0.73
(0.841) 		0.275
(0.477) 		0.52
(0.676)
VASH1 7 (2%) 282 0.129
(0.32) 		0.374
(0.559) 		0.604
(0.734) 		0.163
(0.36) 		0.589
(0.727) 		0.0253
(0.157) 		0.424
(0.6) 		1
(1.00)
IFNA17 4 (1%) 285 0.651
(0.773) 		0.0273
(0.165) 		1
(1.00) 		0.56
(0.702) 		0.526
(0.678) 		0.641
(0.764) 		0.315
(0.517) 		0.822
(0.909)
DENND1C 7 (2%) 282 0.407
(0.586) 		0.516
(0.673) 		0.117
(0.309) 		0.329
(0.522) 		0.135
(0.323) 		0.147
(0.341) 		0.0438
(0.201) 		0.112
(0.305)
CNKSR1 7 (2%) 282 0.13
(0.321) 		0.0542
(0.225) 		0.16
(0.358) 		0.0146
(0.119) 		0.134
(0.322) 		0.0807
(0.267) 		0.735
(0.844) 		0.459
(0.627)
MYCT1 6 (2%) 283 0.479
(0.641) 		0.102
(0.296) 		0.367
(0.55) 		0.188
(0.395) 		0.813
(0.907) 		0.0437
(0.201) 		0.737
(0.845) 		0.409
(0.588)
ATRIP 5 (2%) 284 0.402
(0.581) 		0.209
(0.416) 		0.366
(0.55) 		0.064
(0.242) 		0.365
(0.55) 		0.162
(0.359) 		0.187
(0.394) 		0.0488
(0.211)
TIMP3 6 (2%) 283 0.645
(0.768) 		0.235
(0.438) 		0.0833
(0.269) 		0.381
(0.562) 		0.654
(0.776) 		0.211
(0.418) 		0.127
(0.317) 		0.0337
(0.177)
TM6SF1 6 (2%) 283 0.106
(0.301) 		0.211
(0.418) 		0.243
(0.449) 		0.221
(0.425) 		0.309
(0.515) 		0.014
(0.116) 		1
(1.00) 		0.46
(0.627)
EPHB6 11 (4%) 278 0.201
(0.408) 		0.072
(0.255) 		0.0583
(0.23) 		0.00962
(0.0993) 		0.289
(0.49) 		0.184
(0.392) 		0.054
(0.225) 		0.233
(0.436)
ITGAV 13 (4%) 276 0.147
(0.341) 		0.534
(0.683) 		1
(1.00) 		0.516
(0.673) 		0.144
(0.338) 		0.329
(0.522) 		0.195
(0.402) 		0.0121
(0.111)
SAMD9L 18 (6%) 271 0.0677
(0.247) 		0.216
(0.422) 		0.463
(0.628) 		0.654
(0.776) 		0.2
(0.408) 		0.0143
(0.117) 		0.0653
(0.244) 		0.145
(0.338)
PIK3R1 10 (3%) 279 0.754
(0.858) 		0.669
(0.786) 		0.83
(0.916) 		0.267
(0.47) 		0.256
(0.46) 		0.0435
(0.201) 		0.329
(0.522) 		0.157
(0.358)
CDC5L 15 (5%) 274 0.223
(0.425) 		0.166
(0.363) 		0.623
(0.746) 		0.323
(0.518) 		0.381
(0.562) 		0.0313
(0.172) 		0.536
(0.685) 		0.268
(0.472)
COL20A1 18 (6%) 271 0.113
(0.306) 		0.147
(0.341) 		0.741
(0.847) 		0.654
(0.776) 		0.523
(0.678) 		0.0108
(0.104) 		0.422
(0.599) 		1
(1.00)
AP3M2 10 (3%) 279 0.0846
(0.269) 		0.514
(0.671) 		0.709
(0.821) 		0.363
(0.55) 		0.25
(0.459) 		0.0204
(0.141) 		0.483
(0.642) 		0.221
(0.425)
CORIN 10 (3%) 279 0.755
(0.858) 		0.0571
(0.229) 		0.0873
(0.272) 		0.0183
(0.131) 		0.251
(0.459) 		0.183
(0.39) 		0.251
(0.459) 		0.32
(0.518)
ACSS2 9 (3%) 280 0.0167
(0.125) 		0.513
(0.671) 		1
(1.00) 		0.252
(0.459) 		1
(1.00) 		0.0747
(0.261) 		0.815
(0.907) 		1
(1.00)
CD1E 7 (2%) 282 0.259
(0.463) 		0.846
(0.932) 		1
(1.00) 		0.397
(0.577) 		0.24
(0.446) 		0.429
(0.605) 		0.288
(0.489) 		0.0307
(0.171)
DGKD 6 (2%) 283 0.41
(0.588) 		0.465
(0.628) 		1
(1.00) 		0.562
(0.702) 		1
(1.00) 		0.041
(0.193) 		1
(1.00) 		0.0527
(0.223)
FIGNL1 9 (3%) 280 0.0654
(0.244) 		0.217
(0.422) 		0.524
(0.678) 		0.255
(0.46) 		0.353
(0.544) 		0.0193
(0.135) 		0.589
(0.727) 		0.322
(0.518)
UNC50 3 (1%) 286 0.616
(0.741) 		0.262
(0.466) 		0.664
(0.783) 		0.023
(0.149)
CNGA4 18 (6%) 271 0.107
(0.301) 		0.387
(0.567) 		0.792
(0.89) 		0.743
(0.847) 		0.802
(0.899) 		0.0206
(0.142) 		0.723
(0.836) 		0.053
(0.224)
SMARCAL1 13 (4%) 276 0.482
(0.642) 		0.0318
(0.172) 		0.829
(0.915) 		0.157
(0.357) 		0.566
(0.705) 		0.121
(0.312) 		0.7
(0.815) 		0.0795
(0.265)
PUS7 10 (3%) 279 0.0117
(0.109) 		0.421
(0.599) 		0.607
(0.734) 		0.164
(0.36) 		0.254
(0.46) 		0.161
(0.359) 		0.276
(0.478) 		0.252
(0.46)
CNTROB 6 (2%) 283 0.277
(0.478) 		0.109
(0.302) 		0.244
(0.45) 		0.609
(0.734) 		0.309
(0.515) 		0.00035
(0.0146) 		0.287
(0.488) 		0.221
(0.425)
TCF7 9 (3%) 280 0.0161
(0.123) 		0.424
(0.6) 		0.0962
(0.285) 		0.164
(0.36) 		0.355
(0.545) 		0.731
(0.841) 		0.502
(0.659) 		0.453
(0.626)
KIAA1217 19 (7%) 270 0.314
(0.516) 		0.0597
(0.231) 		0.116
(0.308) 		0.0105
(0.104) 		0.0981
(0.29) 		0.0604
(0.232) 		0.175
(0.377) 		0.519
(0.676)
RNMT 8 (3%) 281 0.0314
(0.172) 		0.67
(0.786) 		0.418
(0.597) 		0.526
(0.678) 		0.0909
(0.277) 		0.131
(0.321) 		0.251
(0.459) 		0.0676
(0.247)
HOOK1 6 (2%) 283 0.103
(0.297) 		0.466
(0.628) 		0.117
(0.308) 		0.00772
(0.0868) 		0.812
(0.907) 		0.17
(0.368) 		0.736
(0.844) 		0.216
(0.422)
CCDC25 3 (1%) 286 0.431
(0.606) 		0.619
(0.742) 		0.261
(0.466) 		0.66
(0.78) 		0.0224
(0.147)
HS6ST2 7 (2%) 282 0.13
(0.321) 		0.209
(0.417) 		0.16
(0.359) 		0.0148
(0.119) 		0.135
(0.323) 		0.0821
(0.269) 		0.187
(0.394) 		0.458
(0.627)
FANCA 7 (2%) 282 0.131
(0.321) 		0.233
(0.436) 		0.244
(0.45) 		0.219
(0.423) 		0.137
(0.325) 		0.00293
(0.0517) 		0.483
(0.642) 		0.223
(0.425)
CLIP1 15 (5%) 274 0.759
(0.859) 		0.00578
(0.0746) 		0.311
(0.515) 		0.0877
(0.272) 		0.381
(0.562) 		0.343
(0.534) 		0.148
(0.343) 		0.486
(0.643)
SLA 4 (1%) 285 0.312
(0.516) 		0.213
(0.42) 		0.437
(0.612) 		0.133
(0.322) 		0.527
(0.678) 		0.0126
(0.112) 		0.736
(0.844) 		0.217
(0.422)
PPM1H 8 (3%) 281 0.131
(0.321) 		0.234
(0.437) 		0.606
(0.734) 		0.362
(0.55) 		0.0909
(0.277) 		0.084
(0.269) 		0.102
(0.296) 		0.0468
(0.206)
RHOA 16 (6%) 273 0.1
(0.293) 		0.249
(0.458) 		0.546
(0.694) 		0.514
(0.671) 		0.171
(0.37) 		0.0908
(0.277) 		0.727
(0.839) 		0.8
(0.898)
GAS6 16 (6%) 273 0.205
(0.413) 		0.237
(0.441) 		1
(1.00) 		0.519
(0.675) 		0.0801
(0.266) 		0.171
(0.369) 		0.148
(0.342) 		0.255
(0.46)
TMEM41A 6 (2%) 283 0.103
(0.297) 		0.108
(0.301) 		0.757
(0.858) 		0.219
(0.423) 		0.812
(0.907) 		0.53
(0.679) 		0.48
(0.642) 		0.904
(0.979)
NT5M 5 (2%) 284 0.121
(0.312) 		0.394
(0.574) 		1
(1.00) 		0.559
(0.702) 		0.365
(0.55) 		0.35
(0.543) 		0.315
(0.517) 		0.151
(0.347)
SLC16A6 7 (2%) 282 0.0592
(0.23) 		0.378
(0.561) 		1
(1.00) 		0.361
(0.55) 		0.589
(0.727) 		0.114
(0.307) 		0.0735
(0.258) 		0.224
(0.426)
WDR5 7 (2%) 282 0.341
(0.532) 		0.643
(0.765) 		0.123
(0.312) 		0.609
(0.734) 		0.59
(0.727) 		0.51
(0.667) 		0.189
(0.395) 		0.218
(0.422)
PLOD3 14 (5%) 275 0.0603
(0.232) 		0.371
(0.555) 		0.315
(0.517) 		0.562
(0.702) 		0.104
(0.298) 		0.265
(0.468) 		0.0578
(0.23) 		0.0767
(0.263)
PLAGL2 7 (2%) 282 0.865
(0.945) 		0.668
(0.785) 		0.559
(0.702) 		1
(1.00) 		0.84
(0.926) 		0.291
(0.492) 		1
(1.00) 		0.828
(0.914)
BAX 6 (2%) 283 0.278
(0.478) 		0.109
(0.302) 		0.366
(0.55) 		0.0641
(0.242) 		0.812
(0.907) 		0.169
(0.368) 		0.316
(0.517) 		0.548
(0.695)
ADAM30 14 (5%) 275 0.537
(0.687) 		1
(1.00) 		0.871
(0.95) 		0.595
(0.728) 		0.391
(0.573) 		0.0536
(0.225) 		0.707
(0.82) 		0.419
(0.597)
SERPINI1 8 (3%) 281 0.133
(0.322) 		0.108
(0.301) 		0.607
(0.734) 		0.36
(0.55) 		0.0907
(0.277) 		0.201
(0.409) 		0.185
(0.393) 		0.216
(0.422)
PMEPA1 6 (2%) 283 0.105
(0.298) 		0.371
(0.555) 		0.557
(0.701) 		0.687
(0.802) 		0.311
(0.515) 		0.188
(0.394) 		0.19
(0.396) 		0.457
(0.627)
PAX2 8 (3%) 281 0.135
(0.323) 		0.218
(0.422) 		0.606
(0.734) 		0.36
(0.55) 		0.441
(0.616) 		0.14
(0.331) 		0.815
(0.907) 		0.422
(0.599)
C19ORF40 6 (2%) 283 0.274
(0.477) 		0.553
(0.699) 		0.74
(0.847) 		0.856
(0.94) 		0.307
(0.513) 		0.171
(0.37) 		0.314
(0.517) 		0.546
(0.694)
CCDC153 8 (3%) 281 0.133
(0.322) 		0.219
(0.422) 		1
(1.00) 		0.363
(0.55) 		0.441
(0.616) 		0.0538
(0.225) 		0.124
(0.312) 		0.452
(0.625)
OPTN 9 (3%) 280 0.067
(0.247) 		0.858
(0.941) 		0.194
(0.401) 		0.158
(0.358) 		0.352
(0.543) 		0.229
(0.431) 		0.482
(0.642) 		0.903
(0.979)
SREBF2 10 (3%) 279 0.756
(0.858) 		0.631
(0.753) 		1
(1.00) 		0.61
(0.734) 		0.445
(0.617) 		0.458
(0.627) 		0.592
(0.727) 		0.604
(0.734)
MAP7D1 12 (4%) 277 0.0741
(0.26) 		0.533
(0.682) 		1
(1.00) 		0.684
(0.799) 		0.659
(0.78) 		0.658
(0.779) 		0.0545
(0.225) 		0.298
(0.501)
SLC16A1 7 (2%) 282 0.412
(0.589) 		0.708
(0.82) 		0.606
(0.734) 		0.298
(0.501) 		0.205
(0.413) 		0.381
(0.562) 		0.487
(0.645) 		0.223
(0.425)
CR1L 11 (4%) 278 0.383
(0.564) 		0.909
(0.983) 		0.635
(0.757) 		0.386
(0.566) 		0.289
(0.49) 		0.314
(0.517) 		0.32
(0.518) 		0.456
(0.627)
GALNTL1 10 (3%) 279 0.32
(0.518) 		0.474
(0.637) 		0.178
(0.382) 		1
(1.00) 		0.69
(0.805) 		0.179
(0.383) 		1
(1.00) 		0.822
(0.908)
FAM46D 9 (3%) 280 0.818
(0.907) 		1
(1.00) 		0.547
(0.695) 		0.925
(0.997) 		0.883
(0.961) 		1
(1.00) 		0.867
(0.947) 		0.293
(0.496)
HOXD8 7 (2%) 282 0.129
(0.32) 		0.464
(0.628) 		0.321
(0.518) 		1
(1.00) 		0.206
(0.413) 		0.145
(0.339) 		0.0728
(0.256) 		0.318
(0.518)
ZIM3 10 (3%) 279 0.323
(0.518) 		0.639
(0.762) 		0.466
(0.628) 		0.457
(0.627) 		0.447
(0.619) 		0.277
(0.478) 		0.33
(0.522) 		0.801
(0.899)
FANCE 7 (2%) 282 0.104
(0.297) 		0.465
(0.628) 		0.116
(0.308) 		0.329
(0.522) 		0.137
(0.325) 		0.157
(0.358) 		0.483
(0.642) 		0.223
(0.425)
PALB2 9 (3%) 280 0.0662
(0.245) 		0.295
(0.497) 		0.29
(0.492) 		0.364
(0.55) 		0.351
(0.543) 		0.161
(0.359) 		0.0839
(0.269) 		0.46
(0.627)
ITGA6 6 (2%) 283 0.41
(0.588) 		0.815
(0.907) 		0.0846
(0.269) 		0.611
(0.735) 		0.311
(0.515) 		0.0678
(0.247) 		0.316
(0.517) 		0.549
(0.695)
SDAD1 7 (2%) 282 0.0588
(0.23) 		0.109
(0.302) 		0.76
(0.86) 		0.221
(0.425) 		0.591
(0.727) 		0.109
(0.301) 		0.315
(0.517) 		0.46
(0.627)
TP53RK 6 (2%) 283 0.278
(0.478) 		0.706
(0.82) 		0.366
(0.55) 		0.0645
(0.243) 		0.813
(0.907) 		0.285
(0.487) 		0.735
(0.844) 		0.318
(0.518)
C1R 5 (2%) 284 0.12
(0.312) 		0.813
(0.907) 		0.175
(0.376) 		1
(1.00) 		1
(1.00) 		0.46
(0.627) 		1
(1.00) 		0.821
(0.908)
FGGY 9 (3%) 280 0.595
(0.728) 		0.466
(0.628) 		0.378
(0.561) 		0.337
(0.529) 		0.101
(0.295) 		0.0858
(0.27) 		0.816
(0.907) 		0.242
(0.448)
SERPINB12 8 (3%) 281 0.498
(0.657) 		0.706
(0.82) 		0.605
(0.734) 		0.164
(0.36) 		0.117
(0.308) 		0.0684
(0.248) 		0.114
(0.308) 		0.22
(0.424)
HEXDC 5 (2%) 284 0.121
(0.312) 		0.815
(0.907) 		1
(1.00) 		0.562
(0.702) 		1
(1.00) 		0.634
(0.757) 		1
(1.00) 		1
(1.00)
GATA3 16 (6%) 273 0.0833
(0.269) 		0.268
(0.472) 		1
(1.00) 		0.0702
(0.252) 		0.315
(0.517) 		0.294
(0.496) 		0.471
(0.633) 		0.838
(0.924)
CASC3 8 (3%) 281 0.563
(0.702) 		0.885
(0.962) 		1
(1.00) 		1
(1.00) 		0.739
(0.846) 		0.961
(1.00) 		0.443
(0.616) 		1
(1.00)
PLA2G1B 4 (1%) 285 0.518
(0.675) 		0.371
(0.555) 		0.676
(0.791) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.708
(0.82) 		0.82
(0.908)
CDK12 19 (7%) 270 0.184
(0.392) 		0.561
(0.702) 		0.179
(0.383) 		0.953
(1.00) 		0.0801
(0.266) 		0.158
(0.358) 		0.112
(0.305) 		0.408
(0.587)
PHKB 7 (2%) 282 0.193
(0.4) 		0.0536
(0.225) 		0.607
(0.734) 		0.164
(0.36) 		0.588
(0.727) 		0.107
(0.301) 		0.27
(0.474) 		0.799
(0.898)
CBLL1 6 (2%) 283 0.411
(0.589) 		0.209
(0.417) 		0.556
(0.701) 		0.687
(0.802) 		0.538
(0.687) 		0.889
(0.966) 		1
(1.00) 		0.82
(0.908)
TENC1 11 (4%) 278 0.202
(0.409) 		0.61
(0.734) 		0.844
(0.93) 		0.925
(0.997) 		0.188
(0.395) 		0.348
(0.541) 		0.321
(0.518) 		0.386
(0.566)
C1QA 5 (2%) 284 0.121
(0.312) 		0.469
(0.631) 		0.116
(0.308) 		0.562
(0.702) 		1
(1.00) 		0.352
(0.543) 		0.486
(0.643) 		0.475
(0.638)
DAO 11 (4%) 278 0.202
(0.409) 		0.555
(0.7) 		0.725
(0.836) 		0.199
(0.408) 		0.554
(0.699) 		0.457
(0.627) 		0.443
(0.616) 		0.741
(0.847)
CDKL3 7 (2%) 282 0.0589
(0.23) 		0.86
(0.942) 		0.402
(0.581) 		0.687
(0.802) 		0.134
(0.323) 		0.171
(0.37) 		0.112
(0.305) 		0.318
(0.518)
GLIPR1L2 10 (3%) 279 0.481
(0.642) 		0.884
(0.961) 		0.256
(0.46) 		0.0699
(0.252) 		0.604
(0.734) 		0.0601
(0.232) 		0.322
(0.518) 		0.305
(0.511)
CETN3 7 (2%) 282 0.0588
(0.23) 		0.463
(0.627) 		0.742
(0.847) 		0.856
(0.94) 		0.592
(0.727) 		0.16
(0.358) 		0.285
(0.487) 		0.479
(0.641)
GNPNAT1 4 (1%) 285 0.524
(0.678) 		1
(1.00) 		0.111
(0.304) 		0.0529
(0.223) 		1
(1.00) 		0.19
(0.396) 		1
(1.00) 		1
(1.00)
FAM116A 6 (2%) 283 0.105
(0.298) 		0.282
(0.483) 		0.76
(0.86) 		0.22
(0.424) 		0.812
(0.907) 		0.0502
(0.215) 		0.388
(0.569) 		0.319
(0.518)
PRKAB1 6 (2%) 283 0.646
(0.768) 		0.286
(0.487) 		0.741
(0.847) 		1
(1.00) 		1
(1.00) 		0.942
(1.00) 		1
(1.00) 		0.412
(0.589)
CYP27B1 5 (2%) 284 0.263
(0.467) 		0.707
(0.82) 		1
(1.00) 		0.559
(0.702) 		0.785
(0.884) 		0.349
(0.543) 		0.598
(0.73) 		1
(1.00)
UBQLN2 5 (2%) 284 0.121
(0.312) 		1
(1.00) 		0.118
(0.309) 		0.329
(0.522) 		0.365
(0.55) 		0.35
(0.543) 		0.318
(0.518) 		0.458
(0.627)
PCGF3 6 (2%) 283 0.104
(0.297) 		0.0545
(0.225) 		0.363
(0.55) 		0.0642
(0.242) 		0.308
(0.515) 		0.17
(0.369) 		0.33
(0.522) 		0.213
(0.42)
C20ORF160 8 (3%) 281 0.132
(0.322) 		0.422
(0.599) 		0.758
(0.859) 		0.136
(0.324) 		0.442
(0.616) 		0.2
(0.408) 		0.124
(0.312) 		0.154
(0.353)
EFHA1 9 (3%) 280 0.0652
(0.244) 		0.108
(0.301) 		0.608
(0.734) 		0.163
(0.359) 		0.352
(0.543) 		0.0777
(0.263) 		0.319
(0.518) 		0.383
(0.564)
VEZF1 5 (2%) 284 0.121
(0.312) 		0.737
(0.845) 		0.194
(0.401) 		0.561
(0.702) 		1
(1.00) 		0.924
(0.997) 		1
(1.00) 		0.82
(0.908)
RAB14 8 (3%) 281 0.562
(0.702) 		0.135
(0.324) 		0.365
(0.55) 		0.231
(0.434) 		0.443
(0.616) 		0.063
(0.24) 		0.33
(0.522) 		0.103
(0.296)
MSL3 10 (3%) 279 0.319
(0.518) 		0.459
(0.627) 		1
(1.00) 		0.455
(0.627) 		0.604
(0.734) 		0.257
(0.461) 		0.864
(0.945) 		0.741
(0.847)
GPR160 8 (3%) 281 0.132
(0.321) 		0.233
(0.436) 		1
(1.00) 		0.61
(0.734) 		1
(1.00) 		0.201
(0.409) 		0.598
(0.731) 		1
(1.00)
KDELR3 3 (1%) 286 0.593
(0.727) 		0.271
(0.475) 		0.269
(0.474) 		0.123
(0.312) 		0.425
(0.601) 		0.264
(0.467)
FBXO48 4 (1%) 285 0.429
(0.605) 		0.394
(0.574) 		0.438
(0.612) 		0.133
(0.322) 		0.526
(0.678) 		0.0959
(0.285) 		0.315
(0.517) 		0.152
(0.349)
TBC1D22B 7 (2%) 282 0.13
(0.321) 		0.0551
(0.225) 		0.757
(0.858) 		0.224
(0.426) 		0.59
(0.727) 		0.109
(0.301) 		0.483
(0.642) 		0.479
(0.641)
TAS2R42 4 (1%) 285 1
(1.00) 		0.644
(0.766) 		1
(1.00) 		1
(1.00) 		0.529
(0.679) 		0.59
(0.727) 		0.317
(0.518) 		0.154
(0.353)
NEXN 8 (3%) 281 0.204
(0.412) 		0.86
(0.942) 		0.401
(0.581) 		0.61
(0.734) 		0.116
(0.308) 		0.418
(0.596) 		0.541
(0.689) 		0.241
(0.447)
CLDN6 7 (2%) 282 0.059
(0.23) 		0.0553
(0.226) 		0.756
(0.858) 		0.222
(0.425) 		0.136
(0.324) 		0.147
(0.341) 		0.273
(0.476) 		0.115
(0.308)
PLEKHO1 7 (2%) 282 0.0589
(0.23) 		1
(1.00) 		0.463
(0.627) 		0.579
(0.719) 		0.135
(0.323) 		0.17
(0.369) 		0.104
(0.297) 		0.458
(0.627)
HTR1E 9 (3%) 280 0.137
(0.325) 		0.0654
(0.244) 		0.119
(0.31) 		0.236
(0.439) 		0.48
(0.642) 		0.23
(0.433) 		0.0673
(0.247) 		0.452
(0.625)
BMPR1B 7 (2%) 282 0.0593
(0.23) 		0.109
(0.302) 		1
(1.00) 		0.362
(0.55) 		0.136
(0.324) 		0.159
(0.358) 		0.316
(0.517) 		0.55
(0.696)
USP15 6 (2%) 283 0.102
(0.296) 		1
(1.00) 		0.405
(0.585) 		0.687
(0.802) 		0.309
(0.515) 		0.17
(0.369) 		0.734
(0.844) 		0.457
(0.627)
IGF2BP3 5 (2%) 284 0.526
(0.678) 		0.211
(0.418) 		1
(1.00) 		0.329
(0.522) 		0.36
(0.55) 		0.164
(0.36) 		0.101
(0.295) 		0.459
(0.627)
MOCS2 4 (1%) 285 0.518
(0.675) 		0.674
(0.791) 		1
(1.00) 		0.528
(0.679) 		0.365
(0.55)
IL2RG 6 (2%) 283 0.104
(0.297) 		0.108
(0.301) 		1
(1.00) 		0.563
(0.702) 		0.812
(0.907) 		0.273
(0.476) 		0.287
(0.488) 		0.905
(0.98)
TCHP 10 (3%) 279 0.0863
(0.271) 		0.668
(0.785) 		0.551
(0.697) 		0.924
(0.997) 		0.255
(0.46) 		0.117
(0.308) 		0.503
(0.66) 		0.0513
(0.218)
WNT1 8 (3%) 281 0.874
(0.952) 		0.0658
(0.245) 		0.526
(0.678) 		0.223
(0.425) 		0.443
(0.616) 		0.532
(0.681) 		0.123
(0.312) 		0.163
(0.36)
UBC 8 (3%) 281 0.131
(0.321) 		0.468
(0.63) 		0.366
(0.55) 		0.064
(0.242) 		0.443
(0.616) 		0.0531
(0.224) 		1
(1.00) 		0.903
(0.979)
XK 5 (2%) 284 0.711
(0.822) 		0.554
(0.699) 		0.262
(0.466) 		0.853
(0.938) 		0.585
(0.724) 		0.595
(0.728) 		1
(1.00) 		0.821
(0.908)
CTSA 4 (1%) 285 0.428
(0.604) 		0.739
(0.846) 		0.272
(0.476) 		1
(1.00) 		1
(1.00) 		0.298
(0.501) 		1
(1.00) 		0.823
(0.91)
TMEM41B 4 (1%) 285 0.521
(0.676) 		0.273
(0.476) 		1
(1.00) 		0.055
(0.225) 		1
(1.00) 		0.0665
(0.245)
ENTPD2 4 (1%) 285 0.311
(0.515) 		0.392
(0.573) 		1
(1.00) 		1
(1.00) 		0.527
(0.678) 		0.0532
(0.224)
EVL 7 (2%) 282 0.0592
(0.23) 		0.815
(0.907) 		0.322
(0.518) 		0.115
(0.308) 		1
(1.00) 		0.458
(0.627) 		1
(1.00) 		1
(1.00)
INTS12 6 (2%) 283 0.277
(0.478) 		0.817
(0.907) 		0.676
(0.791) 		1
(1.00) 		0.811
(0.907) 		0.0674
(0.247) 		0.736
(0.844) 		0.319
(0.518)
NCAPH 10 (3%) 279 0.273
(0.476) 		0.857
(0.941) 		0.46
(0.627) 		0.58
(0.72) 		0.255
(0.46) 		0.942
(1.00) 		0.331
(0.522) 		0.8
(0.898)
ACP1 5 (2%) 284 0.121
(0.312) 		0.208
(0.415) 		1
(1.00) 		0.563
(0.702) 		0.363
(0.55) 		0.19
(0.397) 		0.186
(0.394) 		0.459
(0.627)
ERBB2 14 (5%) 275 0.76
(0.86) 		0.248
(0.457) 		0.326
(0.522) 		0.411
(0.589) 		0.314
(0.516) 		0.79
(0.889) 		0.194
(0.401) 		0.676
(0.791)
TBL1XR1 5 (2%) 284 0.311
(0.515) 		0.391
(0.573) 		1
(1.00) 		0.329
(0.522) 		0.364
(0.55) 		0.328
(0.522) 		0.315
(0.517) 		0.547
(0.695)
CCDC148 5 (2%) 284 0.401
(0.581) 		0.469
(0.631) 		0.436
(0.61) 		0.561
(0.702) 		0.362
(0.55) 		0.351
(0.543) 		0.735
(0.844) 		0.318
(0.518)
ANKRD23 5 (2%) 284 0.596
(0.728) 		0.285
(0.486) 		1
(1.00) 		0.85
(0.935) 		0.787
(0.885) 		0.922
(0.996) 		0.738
(0.845) 		0.407
(0.586)
C19ORF26 7 (2%) 282 0.873
(0.952) 		1
(1.00) 		1
(1.00) 		0.893
(0.97) 		0.59
(0.727) 		0.0837
(0.269) 		1
(1.00) 		1
(1.00)
NAA25 14 (5%) 275 0.542
(0.69) 		0.185
(0.393) 		1
(1.00) 		1
(1.00) 		0.833
(0.919) 		0.755
(0.858) 		0.812
(0.907) 		1
(1.00)
RING1 8 (3%) 281 0.2
(0.408) 		0.858
(0.941) 		0.781
(0.88) 		0.579
(0.719) 		0.116
(0.308) 		0.418
(0.596) 		1
(1.00) 		0.185
(0.393)
SAFB 9 (3%) 280 0.482
(0.642) 		0.513
(0.671) 		0.369
(0.553) 		1
(1.00) 		0.563
(0.702) 		0.0853
(0.27) 		0.816
(0.907) 		0.649
(0.772)
KCNH4 6 (2%) 283 0.41
(0.588) 		0.133
(0.322) 		0.365
(0.55) 		0.0646
(0.243) 		0.203
(0.411) 		0.0712
(0.254) 		0.114
(0.307) 		0.0817
(0.268)
SOAT1 6 (2%) 283 0.104
(0.297) 		0.107
(0.301) 		0.366
(0.55) 		0.328
(0.522) 		0.306
(0.513) 		0.27
(0.474) 		0.186
(0.394) 		0.456
(0.627)
CTNNA1 13 (4%) 276 0.0774
(0.263) 		0.337
(0.529) 		0.215
(0.422) 		0.21
(0.418) 		0.251
(0.459) 		0.352
(0.543) 		0.117
(0.308) 		0.175
(0.376)
FAM55C 13 (4%) 276 0.113
(0.307) 		0.369
(0.553) 		0.499
(0.658) 		0.519
(0.675) 		0.146
(0.339) 		0.17
(0.368) 		0.114
(0.307) 		0.216
(0.422)
SLC25A17 4 (1%) 285 0.312
(0.516) 		0.435
(0.61) 		0.133
(0.322) 		0.527
(0.678) 		0.448
(0.62)
ZNF626 15 (5%) 274 0.103
(0.297) 		0.154
(0.352) 		0.206
(0.413) 		0.28
(0.481) 		0.608
(0.734) 		0.741
(0.847) 		0.533
(0.682) 		0.358
(0.548)
NRAS 4 (1%) 285 0.816
(0.907) 		1
(1.00) 		0.361
(0.55) 		1
(1.00) 		1
(1.00) 		0.764
(0.863) 		1
(1.00) 		1
(1.00)
CEP57 7 (2%) 282 0.0593
(0.23) 		0.465
(0.628) 		0.757
(0.858) 		0.222
(0.425) 		0.137
(0.325) 		0.158
(0.358) 		0.735
(0.844) 		0.456
(0.627)
TMEM55A 3 (1%) 286 0.595
(0.728) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.0736
(0.258)
MRI1 4 (1%) 285 0.524
(0.678) 		0.817
(0.907) 		1
(1.00) 		0.561
(0.702) 		0.525
(0.678) 		0.0958
(0.285)
NUFIP2 7 (2%) 282 0.34
(0.531) 		0.375
(0.559) 		1
(1.00) 		0.61
(0.735) 		0.59
(0.727) 		0.91
(0.984) 		0.331
(0.522) 		0.421
(0.598)
AGBL5 12 (4%) 277 0.384
(0.565) 		0.413
(0.59) 		0.257
(0.461) 		0.253
(0.46) 		0.733
(0.843) 		0.167
(0.365) 		0.586
(0.725) 		0.918
(0.992)
HEPACAM2 8 (3%) 281 0.205
(0.413) 		0.465
(0.628) 		1
(1.00) 		0.361
(0.55) 		0.445
(0.617) 		0.0545
(0.225) 		0.484
(0.642) 		0.904
(0.979)
EPB49 8 (3%) 281 0.131
(0.321) 		0.465
(0.628) 		0.423
(0.599) 		0.403
(0.582) 		0.443
(0.616) 		0.0536
(0.225) 		0.187
(0.394) 		0.214
(0.421)
ZNF23 3 (1%) 286 1
(1.00) 		1
(1.00) 		1
(1.00) 		0.686
(0.801)
SERPINB8 8 (3%) 281 0.203
(0.41) 		0.667
(0.784) 		0.0945
(0.284) 		0.164
(0.361) 		0.443
(0.616) 		0.457
(0.627) 		0.815
(0.907) 		0.801
(0.898)
ERBB4 39 (13%) 250 0.693
(0.807) 		0.0854
(0.27) 		0.954
(1.00) 		0.124
(0.312) 		0.101
(0.295) 		0.0704
(0.252) 		0.225
(0.427) 		0.438
(0.613)
WDR59 11 (4%) 278 0.753
(0.856) 		0.0629
(0.24) 		0.22
(0.424) 		0.0844
(0.269) 		0.554
(0.699) 		0.0888
(0.275) 		0.593
(0.727) 		0.0808
(0.267)
SPHK2 3 (1%) 286 0.431
(0.606) 		0.663
(0.782) 		0.266
(0.469)
TAF1L 23 (8%) 266 0.0578
(0.23) 		0.217
(0.422) 		0.792
(0.89) 		0.148
(0.343) 		0.554
(0.699) 		0.215
(0.421) 		0.452
(0.625) 		0.553
(0.699)
CREM 4 (1%) 285 0.521
(0.676) 		0.21
(0.418) 		0.437
(0.611) 		0.562
(0.702) 		0.53
(0.679) 		0.361
(0.55) 		0.386
(0.566) 		0.46
(0.627)
ALDH2 9 (3%) 280 0.0638
(0.242) 		0.108
(0.301) 		0.607
(0.734) 		0.161
(0.359) 		0.354
(0.544) 		0.251
(0.459) 		0.125
(0.313) 		0.605
(0.734)
H2AFY2 7 (2%) 282 0.34
(0.531) 		0.235
(0.438) 		1
(1.00) 		1
(1.00) 		0.206
(0.413) 		0.526
(0.678) 		0.113
(0.307) 		0.162
(0.359)
SOHLH2 14 (5%) 275 0.664
(0.783) 		0.157
(0.357) 		0.871
(0.95) 		0.938
(1.00) 		0.585
(0.724) 		0.06
(0.232) 		0.901
(0.978) 		0.909
(0.983)
CNKSR2 12 (4%) 277 0.791
(0.889) 		0.883
(0.961) 		0.862
(0.944) 		0.767
(0.866) 		0.115
(0.308) 		0.412
(0.59) 		0.122
(0.312) 		0.605
(0.734)
OR7C1 6 (2%) 283 0.12
(0.312) 		0.109
(0.302) 		0.366
(0.55) 		0.0651
(0.244) 		0.814
(0.907) 		0.269
(0.474) 		0.482
(0.642) 		0.476
(0.638)
TPTE2 10 (3%) 279 0.691
(0.805) 		0.558
(0.702) 		0.755
(0.858) 		0.77
(0.869) 		0.604
(0.734) 		0.518
(0.674) 		0.332
(0.523) 		0.54
(0.689)
OLFML3 4 (1%) 285 0.309
(0.515) 		1
(1.00) 		0.526
(0.678) 		0.363
(0.55)
RINT1 5 (2%) 284 0.122
(0.312) 		0.109
(0.302) 		0.363
(0.55) 		0.0652
(0.244) 		0.365
(0.55) 		0.35
(0.543) 		0.0717
(0.255) 		0.316
(0.517)
FKBP9 6 (2%) 283 0.104
(0.297) 		0.466
(0.628) 		1
(1.00) 		0.609
(0.734) 		0.811
(0.907) 		0.243
(0.449) 		1
(1.00) 		0.767
(0.866)
SGOL2 11 (4%) 278 0.0553
(0.226) 		0.725
(0.836) 		0.38
(0.562) 		0.337
(0.529) 		0.19
(0.396) 		0.458
(0.627) 		0.443
(0.616) 		0.904
(0.979)
KRTAP10-9 9 (3%) 280 0.107
(0.301) 		0.216
(0.422) 		0.291
(0.493) 		0.362
(0.55) 		0.35
(0.543) 		0.405
(0.585) 		0.25
(0.459) 		0.449
(0.621)
SGK3 5 (2%) 284 0.399
(0.579) 		0.394
(0.574) 		1
(1.00) 		0.56
(0.702) 		0.366
(0.55) 		0.349
(0.542)
YIF1A 3 (1%) 286 0.43
(0.605) 		0.615
(0.739) 		0.261
(0.466) 		0.665
(0.783) 		0.684
(0.799)
BEST3 11 (4%) 278 0.657
(0.778) 		0.848
(0.934) 		0.257
(0.461) 		0.628
(0.751) 		0.383
(0.564) 		0.925
(0.997) 		0.796
(0.894) 		0.351
(0.543)
STX2 6 (2%) 283 0.23
(0.434) 		0.0538
(0.225) 		0.364
(0.55) 		0.234
(0.437) 		0.654
(0.776) 		0.529
(0.679) 		0.0923
(0.279) 		0.255
(0.46)
ARHGEF5 5 (2%) 284 0.122
(0.312) 		0.395
(0.575) 		1
(1.00) 		0.854
(0.939) 		1
(1.00) 		0.164
(0.36)
FAM92B 3 (1%) 286 1
(1.00) 		0.272
(0.476) 		0.174
(0.375) 		0.442
(0.616) 		0.272
(0.476) 		1
(1.00)
BRSK1 12 (4%) 277 0.0546
(0.225) 		0.695
(0.81) 		0.0952
(0.284) 		0.595
(0.728) 		0.329
(0.522) 		0.168
(0.366) 		0.8
(0.898) 		0.28
(0.48)
KIAA1804 8 (3%) 281 0.513
(0.671) 		0.466
(0.628) 		0.817
(0.907) 		1
(1.00) 		0.0907
(0.277) 		0.34
(0.531) 		0.597
(0.729) 		0.317
(0.517)
OR51A7 6 (2%) 283 0.865
(0.945) 		0.0707
(0.253) 		1
(1.00) 		0.495
(0.653) 		0.416
(0.595) 		0.764
(0.864) 		0.169
(0.368) 		0.482
(0.642)
KCTD21 7 (2%) 282 0.0584
(0.23) 		0.849
(0.934) 		0.372
(0.557) 		0.583
(0.722) 		0.134
(0.322) 		0.0835
(0.269) 		0.112
(0.305) 		0.317
(0.518)
STK38 6 (2%) 283 0.275
(0.477) 		0.463
(0.628) 		0.758
(0.859) 		0.221
(0.425) 		0.308
(0.515) 		0.0665
(0.245) 		0.113
(0.306) 		0.222
(0.425)
DDX43 10 (3%) 279 0.188
(0.394) 		0.218
(0.422) 		1
(1.00) 		0.925
(0.997) 		0.787
(0.885) 		0.34
(0.531) 		0.33
(0.522) 		0.156
(0.356)
FAAH 4 (1%) 285 0.521
(0.676) 		1
(1.00) 		0.36
(0.55) 		1
(1.00) 		0.724
(0.836) 		0.539
(0.688)
EYA4 15 (5%) 274 0.433
(0.607) 		0.784
(0.883) 		0.376
(0.56) 		0.412
(0.59) 		0.838
(0.924) 		0.549
(0.695) 		0.444
(0.617) 		0.904
(0.979)
OR2J3 6 (2%) 283 0.411
(0.589) 		0.107
(0.301) 		0.759
(0.86) 		1
(1.00) 		0.655
(0.777) 		0.287
(0.488) 		0.482
(0.642) 		0.244
(0.45)
GPR141 9 (3%) 280 0.136
(0.324) 		0.42
(0.598) 		0.421
(0.599) 		1
(1.00) 		0.353
(0.543) 		0.161
(0.359) 		1
(1.00) 		0.24
(0.446)
TLR4 21 (7%) 268 0.0895
(0.276) 		0.29
(0.491) 		0.321
(0.518) 		0.0756
(0.262) 		0.21
(0.418) 		0.0929
(0.281) 		0.644
(0.766) 		0.539
(0.688)
LYSMD3 10 (3%) 279 0.321
(0.518) 		0.475
(0.638) 		1
(1.00) 		0.223
(0.425) 		0.604
(0.734) 		0.0855
(0.27) 		0.443
(0.616) 		0.741
(0.847)
ERN2 11 (4%) 278 0.201
(0.409) 		0.423
(0.6) 		1
(1.00) 		0.457
(0.627) 		0.553
(0.699) 		0.249
(0.458) 		0.322
(0.518) 		0.465
(0.628)
DSTN 5 (2%) 284 0.31
(0.515) 		0.816
(0.907) 		1
(1.00) 		1
(1.00) 		0.365
(0.55) 		0.162
(0.359) 		0.188
(0.395) 		0.215
(0.422)
PTPDC1 8 (3%) 281 0.703
(0.817) 		0.321
(0.518) 		1
(1.00) 		0.257
(0.461) 		0.526
(0.678) 		0.279
(0.48) 		0.33
(0.522) 		0.253
(0.46)
NDST2 8 (3%) 281 0.202
(0.409) 		0.468
(0.63) 		0.525
(0.678) 		0.407
(0.586) 		0.115
(0.308) 		0.199
(0.408) 		0.818
(0.907) 		0.214
(0.421)
TAF7L 7 (2%) 282 0.0594
(0.231) 		0.763
(0.863) 		1
(1.00) 		0.581
(0.721) 		0.136
(0.324) 		0.169
(0.367) 		1
(1.00) 		0.674
(0.791)
RDX 7 (2%) 282 0.515
(0.672) 		0.235
(0.438) 		0.116
(0.308) 		0.657
(0.778) 		0.203
(0.411) 		0.382
(0.564) 		0.596
(0.728) 		0.242
(0.448)
CD58 6 (2%) 283 0.104
(0.297) 		0.466
(0.628) 		0.755
(0.858) 		0.61
(0.735) 		0.309
(0.515) 		0.273
(0.476) 		0.114
(0.308) 		0.316
(0.517)
ZBTB49 7 (2%) 282 0.875
(0.953) 		1
(1.00) 		0.609
(0.734) 		0.164
(0.36) 		1
(1.00) 		0.0918
(0.278) 		0.592
(0.727) 		0.357
(0.548)
KRT24 5 (2%) 284 0.486
(0.644) 		0.465
(0.628) 		0.437
(0.611) 		0.131
(0.321) 		0.366
(0.55) 		0.68
(0.795) 		0.736
(0.844) 		0.247
(0.454)
EEF2K 9 (3%) 280 0.563
(0.702) 		0.848
(0.933) 		1
(1.00) 		0.625
(0.748) 		0.0851
(0.269) 		0.409
(0.588) 		0.288
(0.489) 		0.158
(0.358)
EXOSC8 5 (2%) 284 0.402
(0.582) 		0.393
(0.573) 		1
(1.00) 		0.33
(0.522) 		0.366
(0.55) 		0.351
(0.543) 		0.314
(0.516) 		0.457
(0.627)
CNOT6 7 (2%) 282 0.0593
(0.23) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.289
(0.491) 		0.556
(0.701) 		1
(1.00)
KIAA1462 22 (8%) 267 0.696
(0.811) 		0.243
(0.449) 		0.433
(0.607) 		0.142
(0.332) 		0.427
(0.603) 		0.11
(0.303) 		0.0629
(0.24) 		0.0637
(0.242)
NOB1 7 (2%) 282 0.0591
(0.23) 		0.818
(0.907) 		0.608
(0.734) 		0.362
(0.55) 		0.135
(0.323) 		0.44
(0.615) 		0.734
(0.844) 		0.458
(0.627)
CYP7B1 16 (6%) 273 1
(1.00) 		0.313
(0.516) 		0.177
(0.38) 		0.619
(0.742) 		0.485
(0.643) 		0.82
(0.908) 		0.525
(0.678) 		0.391
(0.573)
STAU2 8 (3%) 281 0.202
(0.409) 		1
(1.00) 		1
(1.00) 		0.382
(0.563) 		1
(1.00) 		0.635
(0.758) 		0.705
(0.82) 		0.385
(0.566)
SLFN12 7 (2%) 282 0.342
(0.533) 		0.217
(0.422) 		0.739
(0.846) 		0.857
(0.941) 		0.589
(0.727) 		0.126
(0.315) 		0.59
(0.727) 		0.448
(0.62)
TUBE1 7 (2%) 282 0.13
(0.321) 		0.464
(0.628) 		0.74
(0.847) 		0.66
(0.78) 		0.589
(0.727) 		0.146
(0.34) 		0.284
(0.486) 		0.16
(0.358)
MDM2 5 (2%) 284 0.398
(0.577) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.139
(0.329)
SIK1 5 (2%) 284 0.12
(0.312) 		1
(1.00) 		0.742
(0.847) 		0.854
(0.939) 		1
(1.00) 		0.633
(0.756) 		0.482
(0.642) 		0.903
(0.979)
PIGT 8 (3%) 281 0.132
(0.322) 		0.421
(0.599) 		0.292
(0.493) 		0.364
(0.55) 		1
(1.00) 		0.132
(0.322) 		0.322
(0.518) 		0.422
(0.599)
NUPL2 7 (2%) 282 0.129
(0.32) 		0.574
(0.713) 		1
(1.00) 		0.612
(0.737) 		0.135
(0.323) 		0.17
(0.369) 		0.113
(0.307) 		0.184
(0.392)
NOS3 10 (3%) 279 0.461
(0.627) 		0.423
(0.599) 		0.222
(0.425) 		0.0674
(0.247) 		0.0945
(0.284) 		0.217
(0.422) 		0.123
(0.312) 		0.321
(0.518)
LINGO4 10 (3%) 279 0.819
(0.908) 		0.293
(0.495) 		0.842
(0.928) 		0.361
(0.55) 		0.253
(0.46) 		0.457
(0.627) 		0.867
(0.947) 		0.46
(0.627)
CHRNB3 11 (4%) 278 0.2
(0.408) 		0.858
(0.941) 		1
(1.00) 		0.226
(0.428) 		0.556
(0.701) 		0.456
(0.627) 		0.432
(0.606) 		1
(1.00)
PCBP2 4 (1%) 285 0.31
(0.515) 		0.212
(0.419) 		0.438
(0.612) 		0.133
(0.322) 		0.528
(0.679) 		0.0961
(0.285) 		0.316
(0.517) 		0.15
(0.345)
PIAS3 5 (2%) 284 0.123
(0.312) 		0.74
(0.846) 		1
(1.00) 		0.564
(0.703) 		0.363
(0.55) 		0.348
(0.542)
SERPINA1 7 (2%) 282 0.342
(0.533) 		0.739
(0.846) 		1
(1.00) 		1
(1.00) 		0.589
(0.727) 		0.456
(0.627) 		1
(1.00) 		1
(1.00)
SCAMP2 6 (2%) 283 0.275
(0.477) 		0.21
(0.418) 		0.243
(0.449) 		0.219
(0.422) 		0.308
(0.515) 		0.245
(0.451) 		1
(1.00) 		1
(1.00)
ZNF367 4 (1%) 285 0.312
(0.516) 		0.393
(0.573) 		1
(1.00) 		0.564
(0.702) 		1
(1.00) 		0.294
(0.497) 		1
(1.00) 		1
(1.00)
GFOD1 13 (4%) 276 0.293
(0.496) 		0.473
(0.636) 		0.592
(0.727) 		0.449
(0.621) 		0.0809
(0.267) 		0.105
(0.298) 		0.0502
(0.215) 		0.351
(0.543)
MUT 6 (2%) 283 0.105
(0.298) 		0.468
(0.63) 		0.758
(0.859) 		0.223
(0.425) 		0.309
(0.515) 		0.272
(0.476) 		0.102
(0.296) 		0.461
(0.627)
MGST2 3 (1%) 286 0.432
(0.606) 		0.393
(0.574) 		0.618
(0.742) 		0.262
(0.467) 		0.663
(0.782) 		0.264
(0.467)
MAP2K1 5 (2%) 284 0.595
(0.728) 		1
(1.00) 		0.117
(0.309) 		1
(1.00) 		0.362
(0.55) 		0.459
(0.627) 		0.48
(0.642) 		0.904
(0.979)
PIAS1 10 (3%) 279 0.319
(0.518) 		1
(1.00) 		0.551
(0.697) 		0.779
(0.878) 		0.254
(0.46) 		0.207
(0.414) 		0.5
(0.658) 		0.275
(0.477)
SMAD7 5 (2%) 284 0.816
(0.907) 		0.274
(0.476) 		0.741
(0.847) 		1
(1.00) 		0.187
(0.394) 		0.926
(0.998) 		0.313
(0.516) 		0.152
(0.348)
UPK2 3 (1%) 286 0.432
(0.606) 		0.663
(0.782) 		0.267
(0.471)
PNMT 8 (3%) 281 0.562
(0.702) 		0.859
(0.942) 		0.818
(0.907) 		0.628
(0.751) 		1
(1.00) 		0.891
(0.968) 		1
(1.00) 		0.768
(0.867)
IGSF21 3 (1%) 286 0.431
(0.606) 		1
(1.00) 		0.175
(0.377) 		1
(1.00) 		0.663
(0.782) 		0.683
(0.798) 		0.316
(0.517) 		0.458
(0.627)
TAS2R10 3 (1%) 286 0.591
(0.727) 		0.393
(0.573) 		0.618
(0.742) 		0.263
(0.467) 		0.665
(0.783) 		0.263
(0.467)
FOXQ1 3 (1%) 286 0.431
(0.606) 		0.615
(0.74) 		0.26
(0.465) 		0.661
(0.781) 		1
(1.00)
SMAD2 9 (3%) 280 0.483
(0.642) 		0.0538
(0.225) 		0.12
(0.312) 		0.0768
(0.263) 		0.0854
(0.27) 		0.0801
(0.266) 		0.114
(0.307) 		0.317
(0.517)
UGP2 7 (2%) 282 0.0592
(0.23) 		0.377
(0.56) 		0.118
(0.309) 		0.329
(0.522) 		0.588
(0.727) 		0.083
(0.269) 		0.817
(0.907) 		0.8
(0.898)
FAHD2B 5 (2%) 284 0.121
(0.312) 		0.391
(0.573) 		1
(1.00) 		0.328
(0.522) 		0.365
(0.55) 		0.192
(0.399)
CLGN 8 (3%) 281 0.133
(0.322) 		0.465
(0.628) 		0.783
(0.882) 		0.583
(0.722) 		0.441
(0.616) 		0.141
(0.332) 		0.484
(0.642) 		0.476
(0.638)
NBN 13 (4%) 276 0.293
(0.495) 		0.233
(0.436) 		0.481
(0.642) 		0.509
(0.667) 		0.906
(0.98) 		0.673
(0.79) 		0.134
(0.323) 		0.432
(0.606)
PRKAR1B 5 (2%) 284 0.121
(0.312) 		0.21
(0.418) 		0.366
(0.55) 		0.33
(0.522) 		0.364
(0.55) 		0.353
(0.544) 		0.311
(0.515) 		0.546
(0.694)
PPP1R13B 10 (3%) 279 0.102
(0.296) 		0.746
(0.85) 		0.591
(0.727) 		0.928
(1) 		0.252
(0.459) 		0.111
(0.304) 		0.484
(0.642) 		0.674
(0.79)
PHACTR1 9 (3%) 280 0.0659
(0.245) 		0.464
(0.628) 		1
(1.00) 		0.362
(0.55) 		0.774
(0.873) 		0.16
(0.358) 		1
(1.00) 		0.353
(0.543)
DHRS9 9 (3%) 280 0.82
(0.908) 		0.108
(0.301) 		0.378
(0.561) 		0.157
(0.358) 		0.101
(0.295) 		0.0789
(0.265) 		0.736
(0.844) 		0.461
(0.627)
PRICKLE4 6 (2%) 283 0.105
(0.298) 		0.558
(0.702) 		0.323
(0.518) 		0.689
(0.804) 		0.309
(0.515) 		0.27
(0.474) 		0.316
(0.517) 		0.545
(0.693)
WNT9A 8 (3%) 281 0.398
(0.578) 		0.0763
(0.262) 		1
(1.00) 		0.627
(0.749) 		1
(1.00) 		0.676
(0.791) 		0.814
(0.907) 		0.294
(0.497)
ENOSF1 7 (2%) 282 0.342
(0.533) 		0.537
(0.687) 		0.744
(0.847) 		0.857
(0.941) 		0.589
(0.727) 		0.384
(0.565) 		0.287
(0.488) 		0.905
(0.979)
SLC38A6 8 (3%) 281 0.562
(0.702) 		0.11
(0.303) 		0.608
(0.734) 		0.161
(0.359) 		0.445
(0.617) 		0.085
(0.269) 		0.0852
(0.27) 		0.382
(0.564)
PPARG 4 (1%) 285 0.312
(0.516) 		1
(1.00) 		0.561
(0.702) 		0.529
(0.679) 		0.365
(0.55)
LARP7 3 (1%) 286 1
(1.00) 		0.272
(0.476) 		0.62
(0.743) 		0.445
(0.617) 		0.269
(0.473) 		0.122
(0.312) 		0.127
(0.317) 		0.184
(0.392)
KIF6 7 (2%) 282 0.408
(0.587) 		0.466
(0.628) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.0562
(0.227) 		1
(1.00) 		0.666
(0.784)
KIAA1609 7 (2%) 282 0.129
(0.321) 		0.467
(0.63) 		1
(1.00) 		0.609
(0.734) 		0.589
(0.727) 		0.0827
(0.269) 		0.187
(0.394) 		0.215
(0.422)
KIAA0586 10 (3%) 279 0.19
(0.396) 		0.42
(0.598) 		0.331
(0.522) 		1
(1.00) 		0.255
(0.46) 		0.217
(0.422) 		0.0565
(0.228) 		0.523
(0.678)
DYRK1A 9 (3%) 280 0.132
(0.322) 		0.63
(0.752) 		0.529
(0.679) 		0.255
(0.46) 		0.353
(0.544) 		0.16
(0.358) 		0.444
(0.617) 		0.461
(0.627)
GALK1 4 (1%) 285 0.431
(0.606) 		1
(1.00) 		0.561
(0.702) 		0.529
(0.679) 		0.365
(0.55)
CD3EAP 7 (2%) 282 0.0588
(0.23) 		0.815
(0.907) 		1
(1.00) 		0.608
(0.734) 		0.592
(0.727) 		0.0825
(0.269) 		0.186
(0.394) 		0.459
(0.627)
MAPK15 7 (2%) 282 0.0589
(0.23) 		0.393
(0.573) 		0.758
(0.859) 		0.22
(0.424) 		0.591
(0.727) 		0.147
(0.341) 		0.708
(0.82) 		0.82
(0.908)
PARP15 4 (1%) 285 0.314
(0.516) 		0.815
(0.907) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.54
(0.689) 		0.386
(0.566) 		0.766
(0.866)
CCDC27 6 (2%) 283 0.409
(0.588) 		1
(1.00) 		0.563
(0.702) 		0.608
(0.734) 		0.813
(0.907) 		0.287
(0.488) 		1
(1.00) 		0.904
(0.979)
TRIP11 13 (4%) 276 0.648
(0.77) 		0.922
(0.996) 		0.705
(0.82) 		0.807
(0.904) 		0.569
(0.707) 		0.746
(0.85) 		0.265
(0.468) 		0.527
(0.678)
BCL2L14 3 (1%) 286 0.592
(0.727) 		0.616
(0.741) 		0.442
(0.616) 		0.665
(0.784) 		0.263
(0.467)
CDX2 3 (1%) 286 0.432
(0.607) 		1
(1.00) 		1
(1.00) 		0.664
(0.783) 		0.265
(0.468)
SLC7A10 5 (2%) 284 0.314
(0.516) 		0.466
(0.628) 		1
(1.00) 		0.33
(0.522) 		0.362
(0.55) 		0.348
(0.542) 		0.112
(0.305) 		0.318
(0.518)
RGS2 3 (1%) 286 0.591
(0.727) 		0.617
(0.741) 		0.443
(0.616) 		1
(1.00) 		0.123
(0.312)
DUSP11 4 (1%) 285 0.313
(0.516) 		0.393
(0.573) 		0.618
(0.742) 		0.26
(0.465) 		0.526
(0.678) 		0.0952
(0.284) 		0.317
(0.517) 		0.152
(0.348)
MRPL2 6 (2%) 283 0.121
(0.312) 		0.815
(0.907) 		0.756
(0.858) 		0.218
(0.422) 		0.308
(0.515) 		0.0679
(0.247) 		0.185
(0.393) 		0.457
(0.627)
ZDHHC5 10 (3%) 279 0.188
(0.395) 		0.657
(0.778) 		0.193
(0.401) 		0.395
(0.575) 		0.181
(0.388) 		0.97
(1.00) 		0.0899
(0.277) 		0.352
(0.543)
GCDH 8 (3%) 281 0.133
(0.322) 		1
(1.00) 		0.0843
(0.269) 		0.223
(0.425) 		0.0912
(0.278) 		0.0676
(0.247) 		0.187
(0.394) 		0.214
(0.421)
BTNL8 6 (2%) 283 0.864
(0.945) 		0.36
(0.55) 		0.403
(0.582) 		1
(1.00) 		0.307
(0.513) 		0.663
(0.782) 		0.186
(0.394) 		1
(1.00)
RASA2 8 (3%) 281 0.132
(0.322) 		1
(1.00) 		0.784
(0.883) 		0.58
(0.72) 		0.442
(0.616) 		0.0534
(0.225) 		1
(1.00) 		0.821
(0.908)
NAA16 8 (3%) 281 0.204
(0.412) 		0.465
(0.628) 		0.0952
(0.284) 		0.581
(0.72) 		0.114
(0.307) 		0.171
(0.369) 		0.539
(0.688) 		0.241
(0.447)
NPR3 11 (4%) 278 0.12
(0.312) 		0.884
(0.962) 		0.587
(0.726) 		0.927
(0.999) 		0.19
(0.396) 		0.563
(0.702) 		0.501
(0.658) 		0.54
(0.689)
COX8C 4 (1%) 285 0.311
(0.515) 		0.395
(0.575) 		0.619
(0.742) 		0.262
(0.466) 		1
(1.00) 		0.762
(0.861) 		1
(1.00) 		1
(1.00)
KLHDC8B 8 (3%) 281 0.56
(0.702) 		0.669
(0.786) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.89
(0.967) 		1
(1.00) 		1
(1.00)
FOLH1 11 (4%) 278 0.0542
(0.225) 		0.291
(0.493) 		0.782
(0.882) 		0.585
(0.724) 		1
(1.00) 		0.613
(0.737) 		0.354
(0.544) 		0.918
(0.992)
TXLNG 7 (2%) 282 0.0585
(0.23) 		0.107
(0.301) 		1
(1.00) 		0.329
(0.522) 		0.136
(0.324) 		0.147
(0.342) 		0.112
(0.305) 		0.318
(0.518)
SFTPC 3 (1%) 286 0.43
(0.606) 		0.396
(0.575) 		0.62
(0.743) 		0.262
(0.466) 		0.665
(0.783) 		0.264
(0.467) 		0.316
(0.517) 		0.548
(0.695)
P2RX1 3 (1%) 286 0.43
(0.605) 		0.392
(0.573) 		1
(1.00) 		0.683
(0.798) 		1
(1.00) 		0.066
(0.245)
SCN10A 28 (10%) 261 0.131
(0.321) 		0.512
(0.67) 		0.199
(0.408) 		0.676
(0.791) 		0.645
(0.768) 		0.498
(0.657) 		0.505
(0.663) 		0.568
(0.707)
CBLN3 5 (2%) 284 0.119
(0.311) 		0.209
(0.417) 		0.438
(0.612) 		0.131
(0.321) 		0.366
(0.55) 		0.163
(0.359) 		0.736
(0.844) 		0.214
(0.421)
STK36 10 (3%) 279 0.187
(0.394) 		1
(1.00) 		0.5
(0.658) 		0.143
(0.335) 		0.449
(0.621) 		0.487
(0.645) 		0.0672
(0.247) 		0.169
(0.367)
USP13 11 (4%) 278 0.916
(0.99) 		0.313
(0.516) 		0.384
(0.565) 		0.142
(0.334) 		0.287
(0.488) 		0.348
(0.542) 		0.54
(0.689) 		0.396
(0.575)
CALCRL 8 (3%) 281 0.702
(0.817) 		0.466
(0.628) 		0.461
(0.627) 		0.735
(0.844) 		0.528
(0.679) 		0.102
(0.296) 		0.206
(0.413) 		1
(1.00)
AFP 3 (1%) 286 0.433
(0.607) 		1
(1.00) 		0.592
(0.727)
PPP1R12C 5 (2%) 284 0.122
(0.312) 		0.108
(0.301) 		0.367
(0.551) 		0.0648
(0.244) 		0.361
(0.55) 		0.327
(0.522) 		0.0741
(0.26) 		0.223
(0.425)
CASP1 4 (1%) 285 0.651
(0.773) 		0.646
(0.768) 		1
(1.00) 		0.851
(0.935) 		0.527
(0.678) 		0.449
(0.621) 		0.102
(0.296) 		0.243
(0.449)
KIAA0664 13 (4%) 276 0.0775
(0.263) 		0.335
(0.526) 		0.341
(0.532) 		0.808
(0.905) 		0.507
(0.665) 		0.334
(0.525) 		0.146
(0.34) 		0.53
(0.679)
PFAS 9 (3%) 280 0.106
(0.3) 		0.373
(0.557) 		1
(1.00) 		0.362
(0.55) 		0.771
(0.87) 		0.116
(0.308) 		0.32
(0.518) 		0.742
(0.847)
MMEL1 6 (2%) 283 0.103
(0.297) 		0.393
(0.573) 		0.436
(0.611) 		0.132
(0.322) 		0.31
(0.515) 		0.0683
(0.248)
TOX 9 (3%) 280 0.354
(0.544) 		0.328
(0.522) 		1
(1.00) 		0.626
(0.748) 		0.249
(0.458) 		0.966
(1.00) 		0.594
(0.727) 		0.356
(0.546)
C19ORF70 6 (2%) 283 0.277
(0.478) 		0.109
(0.302) 		0.365
(0.55) 		0.0646
(0.243) 		0.31
(0.515) 		0.0663
(0.245) 		0.113
(0.306) 		0.0812
(0.268)
CENPN 4 (1%) 285 0.31
(0.515) 		1
(1.00) 		0.674
(0.791) 		1
(1.00) 		0.528
(0.679) 		0.188
(0.395) 		0.102
(0.296) 		0.274
(0.477)
SP6 3 (1%) 286 0.429
(0.605) 		0.392
(0.573) 		0.664
(0.783) 		0.263
(0.467) 		0.315
(0.517) 		0.547
(0.695)
CHST9 6 (2%) 283 0.104
(0.298) 		0.392
(0.573) 		0.488
(0.646) 		0.858
(0.941) 		0.308
(0.515) 		0.731
(0.841) 		0.128
(0.318) 		0.457
(0.627)
TAC4 3 (1%) 286 0.594
(0.727) 		1
(1.00) 		0.175
(0.376) 		1
(1.00) 		0.662
(0.782) 		0.264
(0.467)
TDRD3 11 (4%) 278 0.538
(0.688) 		0.232
(0.435) 		0.708
(0.82) 		0.326
(0.521) 		1
(1.00) 		0.601
(0.734) 		0.216
(0.422) 		0.589
(0.727)
EIF2C4 10 (3%) 279 0.629
(0.752) 		0.328
(0.522) 		0.378
(0.561) 		0.265
(0.468) 		0.787
(0.885) 		0.563
(0.702) 		0.706
(0.82) 		0.541
(0.689)
MMP10 8 (3%) 281 0.204
(0.411) 		0.422
(0.599) 		1
(1.00) 		0.33
(0.522) 		0.115
(0.308) 		0.457
(0.627) 		0.0529
(0.223) 		0.24
(0.446)
KYNU 10 (3%) 279 0.0837
(0.269) 		1
(1.00) 		0.5
(0.658) 		0.599
(0.731) 		0.0949
(0.284) 		0.216
(0.422) 		0.0561
(0.227) 		0.239
(0.445)
FAM82A1 4 (1%) 285 0.31
(0.515) 		1
(1.00) 		0.56
(0.702) 		0.529
(0.679) 		1
(1.00)
RASSF5 4 (1%) 285 0.313
(0.516) 		0.212
(0.419) 		0.62
(0.743) 		1
(1.00) 		1
(1.00) 		0.296
(0.499) 		1
(1.00) 		0.767
(0.866)
MTMR11 8 (3%) 281 1
(1.00) 		0.536
(0.685) 		1
(1.00) 		0.256
(0.46) 		0.0693
(0.25) 		0.341
(0.532) 		0.0552
(0.225) 		0.0519
(0.22)
KRT222 5 (2%) 284 0.597
(0.729) 		0.276
(0.478) 		0.437
(0.611) 		0.133
(0.322) 		0.185
(0.393) 		0.189
(0.395) 		0.314
(0.516) 		0.548
(0.695)
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S1.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TP53 MUTATED 60 33 42
TP53 WILD-TYPE 20 22 110

Figure S1.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.036

Table S2.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TP53 MUTATED 62 26 31
TP53 WILD-TYPE 59 11 55

Figure S2.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.25

Table S3.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TP53 MUTATED 79 9 30
TP53 WILD-TYPE 85 4 50
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S4.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TP53 MUTATED 35 50 4 29
TP53 WILD-TYPE 14 52 0 73

Figure S3.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S5.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TP53 MUTATED 18 86 33
TP53 WILD-TYPE 8 93 51

Figure S4.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S6.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TP53 MUTATED 53 31 37 1 15
TP53 WILD-TYPE 16 27 75 0 34

Figure S5.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S7.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TP53 MUTATED 11 50 44
TP53 WILD-TYPE 7 48 51
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.13

Table S8.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TP53 MUTATED 11 23 44 26 1
TP53 WILD-TYPE 6 11 46 43 0

Figure S6.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S9.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARID1A MUTATED 10 8 71
ARID1A WILD-TYPE 70 47 81

Figure S7.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.016

Table S10.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARID1A MUTATED 51 6 17
ARID1A WILD-TYPE 70 31 69

Figure S8.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.24

Table S11.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARID1A MUTATED 59 1 22
ARID1A WILD-TYPE 105 12 58
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S12.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARID1A MUTATED 3 44 0 35
ARID1A WILD-TYPE 46 58 4 67

Figure S9.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.034

Table S13.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARID1A MUTATED 3 69 18
ARID1A WILD-TYPE 23 110 66

Figure S10.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S14.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARID1A MUTATED 8 31 38 0 13
ARID1A WILD-TYPE 61 27 74 1 36

Figure S11.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0081

Table S15.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ARID1A MUTATED 2 42 17
ARID1A WILD-TYPE 16 56 78

Figure S12.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00527 (Fisher's exact test), Q value = 0.071

Table S16.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ARID1A MUTATED 1 14 33 13 0
ARID1A WILD-TYPE 16 20 57 56 1

Figure S13.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S17.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RNF43 MUTATED 3 2 43
RNF43 WILD-TYPE 77 53 109

Figure S14.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S18.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RNF43 MUTATED 33 0 4
RNF43 WILD-TYPE 88 37 82

Figure S15.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.041

Table S19.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RNF43 MUTATED 35 0 5
RNF43 WILD-TYPE 129 13 75

Figure S16.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S20.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RNF43 MUTATED 1 34 0 5
RNF43 WILD-TYPE 48 68 4 97

Figure S17.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S21.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RNF43 MUTATED 0 45 4
RNF43 WILD-TYPE 26 134 80

Figure S18.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S22.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RNF43 MUTATED 1 25 21 0 2
RNF43 WILD-TYPE 68 33 91 1 47

Figure S19.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0089

Table S23.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RNF43 MUTATED 1 26 5
RNF43 WILD-TYPE 17 72 90

Figure S20.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.046

Table S24.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RNF43 MUTATED 1 10 18 3 0
RNF43 WILD-TYPE 16 24 72 66 1

Figure S21.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S25.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LARP4B MUTATED 2 0 25
LARP4B WILD-TYPE 78 55 127

Figure S22.  Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0072

Table S26.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LARP4B MUTATED 18 0 1
LARP4B WILD-TYPE 103 37 85

Figure S23.  Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.94

Table S27.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LARP4B MUTATED 16 1 6
LARP4B WILD-TYPE 148 12 74
'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S28.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LARP4B MUTATED 1 16 0 6
LARP4B WILD-TYPE 48 86 4 96

Figure S24.  Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00647 (Fisher's exact test), Q value = 0.08

Table S29.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LARP4B MUTATED 1 24 2
LARP4B WILD-TYPE 25 155 82

Figure S25.  Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0099

Table S30.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LARP4B MUTATED 1 14 11 0 1
LARP4B WILD-TYPE 68 44 101 1 48

Figure S26.  Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.12

Table S31.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LARP4B MUTATED 2 14 3
LARP4B WILD-TYPE 16 84 92

Figure S27.  Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.29

Table S32.  Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LARP4B MUTATED 1 6 10 2 0
LARP4B WILD-TYPE 16 28 80 67 1
'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S33.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
XYLT2 MUTATED 1 2 28
XYLT2 WILD-TYPE 79 53 124

Figure S28.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S34.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
XYLT2 MUTATED 26 2 2
XYLT2 WILD-TYPE 95 35 84

Figure S29.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.41

Table S35.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
XYLT2 MUTATED 23 1 5
XYLT2 WILD-TYPE 141 12 75
'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.018

Table S36.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
XYLT2 MUTATED 1 22 0 6
XYLT2 WILD-TYPE 48 80 4 96

Figure S30.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.025

Table S37.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
XYLT2 MUTATED 1 29 2
XYLT2 WILD-TYPE 25 150 82

Figure S31.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S38.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
XYLT2 MUTATED 1 16 14 0 1
XYLT2 WILD-TYPE 68 42 98 1 48

Figure S32.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.056

Table S39.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
XYLT2 MUTATED 1 20 5
XYLT2 WILD-TYPE 17 78 90

Figure S33.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00382 (Fisher's exact test), Q value = 0.058

Table S40.  Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
XYLT2 MUTATED 1 9 14 2 0
XYLT2 WILD-TYPE 16 25 76 67 1

Figure S34.  Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.012

Table S41.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
B2M MUTATED 0 0 16
B2M WILD-TYPE 80 55 136

Figure S35.  Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.18

Table S42.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
B2M MUTATED 13 1 2
B2M WILD-TYPE 108 36 84

Figure S36.  Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S43.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
B2M MUTATED 12 0 3
B2M WILD-TYPE 152 13 77
'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S44.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
B2M MUTATED 0 12 0 3
B2M WILD-TYPE 49 90 4 99

Figure S37.  Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.26

Table S45.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
B2M MUTATED 0 15 2
B2M WILD-TYPE 26 164 82
'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.025

Table S46.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
B2M MUTATED 0 10 6 0 1
B2M WILD-TYPE 69 48 106 1 48

Figure S38.  Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.26

Table S47.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
B2M MUTATED 0 12 4
B2M WILD-TYPE 18 86 91
'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0752 (Fisher's exact test), Q value = 0.26

Table S48.  Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
B2M MUTATED 0 6 8 2 0
B2M WILD-TYPE 17 28 82 67 1
'BZRAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.51

Table S49.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BZRAP1 MUTATED 9 8 29
BZRAP1 WILD-TYPE 71 47 123
'BZRAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.27

Table S50.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BZRAP1 MUTATED 25 2 16
BZRAP1 WILD-TYPE 96 35 70
'BZRAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S51.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BZRAP1 MUTATED 22 3 16
BZRAP1 WILD-TYPE 142 10 64
'BZRAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.17

Table S52.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BZRAP1 MUTATED 3 14 0 24
BZRAP1 WILD-TYPE 46 88 4 78

Figure S39.  Get High-res Image Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.8

Table S53.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BZRAP1 MUTATED 5 30 11
BZRAP1 WILD-TYPE 21 149 73
'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.69

Table S54.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BZRAP1 MUTATED 9 8 23 0 6
BZRAP1 WILD-TYPE 60 50 89 1 43
'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 0.96

Table S55.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BZRAP1 MUTATED 2 17 15
BZRAP1 WILD-TYPE 16 81 80
'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BZRAP1 MUTATED 2 5 16 11 0
BZRAP1 WILD-TYPE 15 29 74 58 1
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.23

Table S57.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KRAS MUTATED 4 3 21
KRAS WILD-TYPE 76 52 131
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.73

Table S58.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KRAS MUTATED 13 2 6
KRAS WILD-TYPE 108 35 80
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.94

Table S59.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KRAS MUTATED 16 1 6
KRAS WILD-TYPE 148 12 74
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S60.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KRAS MUTATED 2 14 0 7
KRAS WILD-TYPE 47 88 4 95
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.54

Table S61.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KRAS MUTATED 1 21 6
KRAS WILD-TYPE 25 158 78
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.18

Table S62.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KRAS MUTATED 3 8 16 0 1
KRAS WILD-TYPE 66 50 96 1 48

Figure S40.  Get High-res Image Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S63.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KRAS MUTATED 3 7 7
KRAS WILD-TYPE 15 91 88
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KRAS MUTATED 1 3 7 6 0
KRAS WILD-TYPE 16 31 83 63 1
'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S65.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MLL2 MUTATED 4 4 56
MLL2 WILD-TYPE 76 51 96

Figure S41.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S66.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MLL2 MUTATED 40 3 6
MLL2 WILD-TYPE 81 34 80

Figure S42.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.22

Table S67.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MLL2 MUTATED 44 2 11
MLL2 WILD-TYPE 120 11 69
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0066

Table S68.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MLL2 MUTATED 4 38 0 15
MLL2 WILD-TYPE 45 64 4 87

Figure S43.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S69.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MLL2 MUTATED 2 59 4
MLL2 WILD-TYPE 24 120 80

Figure S44.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S70.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MLL2 MUTATED 5 29 29 0 2
MLL2 WILD-TYPE 64 29 83 1 47

Figure S45.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S71.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MLL2 MUTATED 0 36 6
MLL2 WILD-TYPE 18 62 89

Figure S46.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S72.  Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MLL2 MUTATED 0 13 26 3 0
MLL2 WILD-TYPE 17 21 64 66 1

Figure S47.  Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.072

Table S73.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GNG12 MUTATED 0 0 11
GNG12 WILD-TYPE 80 55 141

Figure S48.  Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S74.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GNG12 MUTATED 5 0 2
GNG12 WILD-TYPE 116 37 84
'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GNG12 MUTATED 7 0 3
GNG12 WILD-TYPE 157 13 77
'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S76.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GNG12 MUTATED 0 7 0 3
GNG12 WILD-TYPE 49 95 4 99
'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.16

Table S77.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GNG12 MUTATED 0 11 0
GNG12 WILD-TYPE 26 168 84

Figure S49.  Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00484 (Fisher's exact test), Q value = 0.067

Table S78.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GNG12 MUTATED 0 7 4 0 0
GNG12 WILD-TYPE 69 51 108 1 49

Figure S50.  Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S79.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GNG12 MUTATED 0 7 0
GNG12 WILD-TYPE 18 91 95

Figure S51.  Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S80.  Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GNG12 MUTATED 0 2 5 0 0
GNG12 WILD-TYPE 17 32 85 69 1
'LMAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.006

Table S81.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LMAN1 MUTATED 0 1 21
LMAN1 WILD-TYPE 80 54 131

Figure S52.  Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LMAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.23

Table S82.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LMAN1 MUTATED 14 1 3
LMAN1 WILD-TYPE 107 36 83
'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S83.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LMAN1 MUTATED 15 1 3
LMAN1 WILD-TYPE 149 12 77
'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.057

Table S84.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LMAN1 MUTATED 0 15 0 4
LMAN1 WILD-TYPE 49 87 4 98

Figure S53.  Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S85.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LMAN1 MUTATED 0 20 2
LMAN1 WILD-TYPE 26 159 82

Figure S54.  Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.042

Table S86.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LMAN1 MUTATED 0 8 13 0 1
LMAN1 WILD-TYPE 69 50 99 1 48

Figure S55.  Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.13

Table S87.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LMAN1 MUTATED 1 12 2
LMAN1 WILD-TYPE 17 86 93

Figure S56.  Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.26

Table S88.  Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LMAN1 MUTATED 0 6 7 2 0
LMAN1 WILD-TYPE 17 28 83 67 1
'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.019

Table S89.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDH1 MUTATED 1 3 24
CDH1 WILD-TYPE 79 52 128

Figure S57.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.057

Table S90.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDH1 MUTATED 7 1 16
CDH1 WILD-TYPE 114 36 70

Figure S58.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.023

Table S91.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDH1 MUTATED 9 0 17
CDH1 WILD-TYPE 155 13 63

Figure S59.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S92.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDH1 MUTATED 1 8 0 17
CDH1 WILD-TYPE 48 94 4 85

Figure S60.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.056

Table S93.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDH1 MUTATED 0 13 16
CDH1 WILD-TYPE 26 166 68

Figure S61.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.006

Table S94.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDH1 MUTATED 1 8 7 0 13
CDH1 WILD-TYPE 68 50 105 1 36

Figure S62.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.31

Table S95.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDH1 MUTATED 0 9 15
CDH1 WILD-TYPE 18 89 80
'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S96.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDH1 MUTATED 1 2 9 12 0
CDH1 WILD-TYPE 16 32 81 57 1
'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S97.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLEKHA6 MUTATED 1 2 16
PLEKHA6 WILD-TYPE 79 53 136

Figure S63.  Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.24

Table S98.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLEKHA6 MUTATED 12 0 4
PLEKHA6 WILD-TYPE 109 37 82
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.85

Table S99.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLEKHA6 MUTATED 10 1 6
PLEKHA6 WILD-TYPE 154 12 74
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.54

Table S100.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLEKHA6 MUTATED 1 10 0 6
PLEKHA6 WILD-TYPE 48 92 4 96
'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.17

Table S101.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLEKHA6 MUTATED 0 18 2
PLEKHA6 WILD-TYPE 26 161 82

Figure S64.  Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.1

Table S102.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLEKHA6 MUTATED 2 9 9 0 0
PLEKHA6 WILD-TYPE 67 49 103 1 49

Figure S65.  Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S103.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLEKHA6 MUTATED 0 13 3
PLEKHA6 WILD-TYPE 18 85 92

Figure S66.  Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.17

Table S104.  Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLEKHA6 MUTATED 0 5 10 1 0
PLEKHA6 WILD-TYPE 17 29 80 68 1

Figure S67.  Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.29

Table S105.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RHOA MUTATED 1 3 12
RHOA WILD-TYPE 79 52 140
'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.46

Table S106.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RHOA MUTATED 5 1 8
RHOA WILD-TYPE 116 36 78
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.69

Table S107.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RHOA MUTATED 8 0 6
RHOA WILD-TYPE 156 13 74
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.67

Table S108.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RHOA MUTATED 1 5 0 8
RHOA WILD-TYPE 48 97 4 94
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S109.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RHOA MUTATED 1 7 8
RHOA WILD-TYPE 25 172 76
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 0.28

Table S110.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RHOA MUTATED 1 1 11 0 3
RHOA WILD-TYPE 68 57 101 1 46
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.84

Table S111.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RHOA MUTATED 0 5 6
RHOA WILD-TYPE 18 93 89
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.9

Table S112.  Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RHOA MUTATED 0 1 5 5 0
RHOA WILD-TYPE 17 33 85 64 1
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.27

Table S113.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SMAD4 MUTATED 3 8 13
SMAD4 WILD-TYPE 77 47 139
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S114.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SMAD4 MUTATED 11 1 8
SMAD4 WILD-TYPE 110 36 78
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SMAD4 MUTATED 14 1 6
SMAD4 WILD-TYPE 150 12 74
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S116.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SMAD4 MUTATED 0 11 1 9
SMAD4 WILD-TYPE 49 91 3 93

Figure S68.  Get High-res Image Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S117.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SMAD4 MUTATED 0 15 9
SMAD4 WILD-TYPE 26 164 75
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S118.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SMAD4 MUTATED 2 7 11 0 4
SMAD4 WILD-TYPE 67 51 101 1 45
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S119.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SMAD4 MUTATED 0 11 6
SMAD4 WILD-TYPE 18 87 89
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.75

Table S120.  Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SMAD4 MUTATED 0 4 8 5 0
SMAD4 WILD-TYPE 17 30 82 64 1
'MTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.17

Table S121.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MTG1 MUTATED 0 0 8
MTG1 WILD-TYPE 80 55 144

Figure S69.  Get High-res Image Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.17

Table S122.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MTG1 MUTATED 7 0 0
MTG1 WILD-TYPE 114 37 86

Figure S70.  Get High-res Image Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S123.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MTG1 MUTATED 6 0 1
MTG1 WILD-TYPE 158 13 79
'MTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S124.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MTG1 MUTATED 0 6 0 1
MTG1 WILD-TYPE 49 96 4 101
'MTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S125.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MTG1 MUTATED 0 8 1
MTG1 WILD-TYPE 26 171 83
'MTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.27

Table S126.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MTG1 MUTATED 2 5 1 0 1
MTG1 WILD-TYPE 67 53 111 1 48
'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S127.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MTG1 MUTATED 0 5 1
MTG1 WILD-TYPE 18 93 94
'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S128.  Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MTG1 MUTATED 0 3 2 1 0
MTG1 WILD-TYPE 17 31 88 68 1
'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.057

Table S129.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KLF3 MUTATED 1 1 17
KLF3 WILD-TYPE 79 54 135

Figure S71.  Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0054

Table S130.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KLF3 MUTATED 17 0 0
KLF3 WILD-TYPE 104 37 86

Figure S72.  Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S131.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KLF3 MUTATED 15 0 3
KLF3 WILD-TYPE 149 13 77
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00618 (Fisher's exact test), Q value = 0.078

Table S132.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KLF3 MUTATED 0 14 0 4
KLF3 WILD-TYPE 49 88 4 98

Figure S73.  Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S133.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KLF3 MUTATED 0 16 3
KLF3 WILD-TYPE 26 163 81
'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S134.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KLF3 MUTATED 3 8 6 0 2
KLF3 WILD-TYPE 66 50 106 1 47
'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S135.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KLF3 MUTATED 1 12 4
KLF3 WILD-TYPE 17 86 91
'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S136.  Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KLF3 MUTATED 0 3 11 3 0
KLF3 WILD-TYPE 17 31 79 66 1
'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.023

Table S137.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CTCF MUTATED 1 0 17
CTCF WILD-TYPE 79 55 135

Figure S74.  Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.41

Table S138.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CTCF MUTATED 10 0 6
CTCF WILD-TYPE 111 37 80
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.85

Table S139.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CTCF MUTATED 11 1 4
CTCF WILD-TYPE 153 12 76
'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.29

Table S140.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CTCF MUTATED 0 10 0 6
CTCF WILD-TYPE 49 92 4 96
'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S141.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CTCF MUTATED 0 15 3
CTCF WILD-TYPE 26 164 81
'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.23

Table S142.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CTCF MUTATED 0 5 10 0 3
CTCF WILD-TYPE 69 53 102 1 46
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S143.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CTCF MUTATED 1 9 4
CTCF WILD-TYPE 17 89 91
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S144.  Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CTCF MUTATED 0 4 8 2 0
CTCF WILD-TYPE 17 30 82 67 1
'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S145.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZBTB20 MUTATED 0 1 27
ZBTB20 WILD-TYPE 80 54 125

Figure S75.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.055

Table S146.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZBTB20 MUTATED 17 0 3
ZBTB20 WILD-TYPE 104 37 83

Figure S76.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S147.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZBTB20 MUTATED 21 1 4
ZBTB20 WILD-TYPE 143 12 76
'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0089

Table S148.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZBTB20 MUTATED 0 21 0 5
ZBTB20 WILD-TYPE 49 81 4 97

Figure S77.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0097

Table S149.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZBTB20 MUTATED 0 27 1
ZBTB20 WILD-TYPE 26 152 83

Figure S78.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0081

Table S150.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZBTB20 MUTATED 1 14 12 0 1
ZBTB20 WILD-TYPE 68 44 100 1 48

Figure S79.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S151.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZBTB20 MUTATED 0 14 3
ZBTB20 WILD-TYPE 18 84 92

Figure S80.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.15

Table S152.  Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZBTB20 MUTATED 0 5 11 1 0
ZBTB20 WILD-TYPE 17 29 79 68 1

Figure S81.  Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GAS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S153.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GAS6 MUTATED 3 1 12
GAS6 WILD-TYPE 77 54 140
'GAS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S154.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GAS6 MUTATED 9 1 2
GAS6 WILD-TYPE 112 36 84
'GAS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GAS6 MUTATED 8 0 3
GAS6 WILD-TYPE 156 13 77
'GAS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S156.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GAS6 MUTATED 1 7 0 3
GAS6 WILD-TYPE 48 95 4 99
'GAS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.27

Table S157.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GAS6 MUTATED 2 13 1
GAS6 WILD-TYPE 24 166 83
'GAS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S158.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GAS6 MUTATED 4 6 6 0 0
GAS6 WILD-TYPE 65 52 106 1 49
'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S159.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GAS6 MUTATED 1 8 2
GAS6 WILD-TYPE 17 90 93
'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S160.  Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GAS6 MUTATED 1 3 6 1 0
GAS6 WILD-TYPE 16 31 84 68 1
'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.019

Table S161.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATP6V1B1 MUTATED 0 2 18
ATP6V1B1 WILD-TYPE 80 53 134

Figure S82.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.038

Table S162.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATP6V1B1 MUTATED 14 0 1
ATP6V1B1 WILD-TYPE 107 37 85

Figure S83.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S163.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATP6V1B1 MUTATED 14 0 3
ATP6V1B1 WILD-TYPE 150 13 77
'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S164.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATP6V1B1 MUTATED 0 13 0 4
ATP6V1B1 WILD-TYPE 49 89 4 98

Figure S84.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.017

Table S165.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATP6V1B1 MUTATED 0 20 0
ATP6V1B1 WILD-TYPE 26 159 84

Figure S85.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.1

Table S166.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATP6V1B1 MUTATED 2 9 9 0 0
ATP6V1B1 WILD-TYPE 67 49 103 1 49

Figure S86.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S167.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATP6V1B1 MUTATED 1 11 2
ATP6V1B1 WILD-TYPE 17 87 93

Figure S87.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0095 (Fisher's exact test), Q value = 0.098

Table S168.  Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATP6V1B1 MUTATED 0 3 11 0 0
ATP6V1B1 WILD-TYPE 17 31 79 69 1

Figure S88.  Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.011

Table S169.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PTEN MUTATED 0 2 20
PTEN WILD-TYPE 80 53 132

Figure S89.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00643 (Fisher's exact test), Q value = 0.079

Table S170.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PTEN MUTATED 14 0 2
PTEN WILD-TYPE 107 37 84

Figure S90.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S171.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PTEN MUTATED 18 0 4
PTEN WILD-TYPE 146 13 76
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.19

Table S172.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PTEN MUTATED 0 13 0 9
PTEN WILD-TYPE 49 89 4 93

Figure S91.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.17

Table S173.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PTEN MUTATED 1 20 2
PTEN WILD-TYPE 25 159 82

Figure S92.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.012

Table S174.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PTEN MUTATED 0 11 11 0 1
PTEN WILD-TYPE 69 47 101 1 48

Figure S93.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.14

Table S175.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PTEN MUTATED 0 13 3
PTEN WILD-TYPE 18 85 92

Figure S94.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.19

Table S176.  Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PTEN MUTATED 0 4 11 1 0
PTEN WILD-TYPE 17 30 79 68 1

Figure S95.  Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S177.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HLA-A MUTATED 2 0 13
HLA-A WILD-TYPE 78 55 139

Figure S96.  Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S178.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HLA-A MUTATED 9 1 0
HLA-A WILD-TYPE 112 36 86

Figure S97.  Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.23

Table S179.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HLA-A MUTATED 14 0 1
HLA-A WILD-TYPE 150 13 79
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00285 (Fisher's exact test), Q value = 0.051

Table S180.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HLA-A MUTATED 1 13 0 1
HLA-A WILD-TYPE 48 89 4 101

Figure S98.  Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0036 (Fisher's exact test), Q value = 0.057

Table S181.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HLA-A MUTATED 0 15 0
HLA-A WILD-TYPE 26 164 84

Figure S99.  Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.23

Table S182.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HLA-A MUTATED 2 7 6 0 0
HLA-A WILD-TYPE 67 51 106 1 49
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.059

Table S183.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HLA-A MUTATED 0 9 0
HLA-A WILD-TYPE 18 89 95

Figure S100.  Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 0.21

Table S184.  Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HLA-A MUTATED 0 4 5 0 0
HLA-A WILD-TYPE 17 30 85 69 1
'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.033

Table S185.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FBXW7 MUTATED 3 1 23
FBXW7 WILD-TYPE 77 54 129

Figure S101.  Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S186.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FBXW7 MUTATED 18 2 3
FBXW7 WILD-TYPE 103 35 83

Figure S102.  Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.57

Table S187.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FBXW7 MUTATED 16 2 5
FBXW7 WILD-TYPE 148 11 75
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.29

Table S188.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FBXW7 MUTATED 2 15 0 6
FBXW7 WILD-TYPE 47 87 4 96
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.18

Table S189.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FBXW7 MUTATED 1 23 3
FBXW7 WILD-TYPE 25 156 81

Figure S103.  Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.028

Table S190.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FBXW7 MUTATED 3 14 9 0 1
FBXW7 WILD-TYPE 66 44 103 1 48

Figure S104.  Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.051

Table S191.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FBXW7 MUTATED 2 17 3
FBXW7 WILD-TYPE 16 81 92

Figure S105.  Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 0.26

Table S192.  Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FBXW7 MUTATED 2 5 13 2 0
FBXW7 WILD-TYPE 15 29 77 67 1
'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S193.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MVK MUTATED 0 2 11
MVK WILD-TYPE 80 53 141

Figure S106.  Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.086

Table S194.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MVK MUTATED 9 0 0
MVK WILD-TYPE 112 37 86

Figure S107.  Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S195.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MVK MUTATED 10 0 1
MVK WILD-TYPE 154 13 79
'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.19

Table S196.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MVK MUTATED 0 9 0 2
MVK WILD-TYPE 49 93 4 100

Figure S108.  Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.27

Table S197.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MVK MUTATED 0 12 1
MVK WILD-TYPE 26 167 83
'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.022

Table S198.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MVK MUTATED 0 9 3 0 1
MVK WILD-TYPE 69 49 109 1 48

Figure S109.  Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S199.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MVK MUTATED 0 4 2
MVK WILD-TYPE 18 94 93
'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.67

Table S200.  Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MVK MUTATED 0 2 3 1 0
MVK WILD-TYPE 17 32 87 68 1
'FRMD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S201.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FRMD4A MUTATED 1 1 15
FRMD4A WILD-TYPE 79 54 137

Figure S110.  Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FRMD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.025

Table S202.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FRMD4A MUTATED 15 0 1
FRMD4A WILD-TYPE 106 37 85

Figure S111.  Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S203.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FRMD4A MUTATED 15 0 2
FRMD4A WILD-TYPE 149 13 78
'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.14

Table S204.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FRMD4A MUTATED 1 13 0 3
FRMD4A WILD-TYPE 48 89 4 99

Figure S112.  Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S205.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FRMD4A MUTATED 1 15 2
FRMD4A WILD-TYPE 25 164 82
'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S206.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FRMD4A MUTATED 1 9 7 0 1
FRMD4A WILD-TYPE 68 49 105 1 48

Figure S113.  Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.22

Table S207.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FRMD4A MUTATED 1 12 3
FRMD4A WILD-TYPE 17 86 92
'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.25

Table S208.  Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FRMD4A MUTATED 1 5 9 1 0
FRMD4A WILD-TYPE 16 29 81 68 1
'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00425 (Fisher's exact test), Q value = 0.063

Table S209.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MBD6 MUTATED 2 1 19
MBD6 WILD-TYPE 78 54 133

Figure S114.  Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S210.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MBD6 MUTATED 12 1 4
MBD6 WILD-TYPE 109 36 82
'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S211.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MBD6 MUTATED 15 1 2
MBD6 WILD-TYPE 149 12 78
'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.2

Table S212.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MBD6 MUTATED 1 13 0 4
MBD6 WILD-TYPE 48 89 4 98

Figure S115.  Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00722 (Fisher's exact test), Q value = 0.085

Table S213.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MBD6 MUTATED 0 21 2
MBD6 WILD-TYPE 26 158 82

Figure S116.  Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.011

Table S214.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MBD6 MUTATED 2 13 8 0 0
MBD6 WILD-TYPE 67 45 104 1 49

Figure S117.  Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.28

Table S215.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MBD6 MUTATED 0 10 3
MBD6 WILD-TYPE 18 88 92
'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0844 (Fisher's exact test), Q value = 0.27

Table S216.  Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MBD6 MUTATED 0 6 4 3 0
MBD6 WILD-TYPE 17 28 86 66 1
'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00468 (Fisher's exact test), Q value = 0.067

Table S217.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZBTB7C MUTATED 1 0 14
ZBTB7C WILD-TYPE 79 55 138

Figure S118.  Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.017

Table S218.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZBTB7C MUTATED 13 0 0
ZBTB7C WILD-TYPE 108 37 86

Figure S119.  Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S219.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZBTB7C MUTATED 11 0 1
ZBTB7C WILD-TYPE 153 13 79
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.15

Table S220.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZBTB7C MUTATED 0 10 0 2
ZBTB7C WILD-TYPE 49 92 4 100

Figure S120.  Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.28

Table S221.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZBTB7C MUTATED 1 13 1
ZBTB7C WILD-TYPE 25 166 83
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.14

Table S222.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZBTB7C MUTATED 2 8 5 0 0
ZBTB7C WILD-TYPE 67 50 107 1 49

Figure S121.  Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S223.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZBTB7C MUTATED 0 12 2
ZBTB7C WILD-TYPE 18 86 93

Figure S122.  Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.17

Table S224.  Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZBTB7C MUTATED 0 6 7 1 0
ZBTB7C WILD-TYPE 17 28 83 68 1

Figure S123.  Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0089

Table S225.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
JARID2 MUTATED 1 2 25
JARID2 WILD-TYPE 79 53 127

Figure S124.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.014

Table S226.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
JARID2 MUTATED 19 0 2
JARID2 WILD-TYPE 102 37 84

Figure S125.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S227.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
JARID2 MUTATED 23 1 2
JARID2 WILD-TYPE 141 12 78

Figure S126.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S228.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
JARID2 MUTATED 0 23 0 3
JARID2 WILD-TYPE 49 79 4 99

Figure S127.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.027

Table S229.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
JARID2 MUTATED 0 26 2
JARID2 WILD-TYPE 26 153 82

Figure S128.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S230.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
JARID2 MUTATED 1 15 11 0 1
JARID2 WILD-TYPE 68 43 101 1 48

Figure S129.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.031

Table S231.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
JARID2 MUTATED 1 16 2
JARID2 WILD-TYPE 17 82 93

Figure S130.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S232.  Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
JARID2 MUTATED 0 7 10 2 0
JARID2 WILD-TYPE 17 27 80 67 1

Figure S131.  Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S233.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PAX6 MUTATED 1 2 15
PAX6 WILD-TYPE 79 53 137

Figure S132.  Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S234.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PAX6 MUTATED 13 0 2
PAX6 WILD-TYPE 108 37 84

Figure S133.  Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S235.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PAX6 MUTATED 13 0 3
PAX6 WILD-TYPE 151 13 77
'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00633 (Fisher's exact test), Q value = 0.079

Table S236.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PAX6 MUTATED 0 13 0 3
PAX6 WILD-TYPE 49 89 4 99

Figure S134.  Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.23

Table S237.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PAX6 MUTATED 0 16 2
PAX6 WILD-TYPE 26 163 82
'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.19

Table S238.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PAX6 MUTATED 1 8 8 0 1
PAX6 WILD-TYPE 68 50 104 1 48

Figure S135.  Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.28

Table S239.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PAX6 MUTATED 0 10 3
PAX6 WILD-TYPE 18 88 92
'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S240.  Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PAX6 MUTATED 0 4 8 1 0
PAX6 WILD-TYPE 17 30 82 68 1
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S241.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIK3CA MUTATED 4 6 47
PIK3CA WILD-TYPE 76 49 105

Figure S136.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.012

Table S242.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIK3CA MUTATED 37 1 13
PIK3CA WILD-TYPE 84 36 73

Figure S137.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.18

Table S243.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIK3CA MUTATED 40 0 12
PIK3CA WILD-TYPE 124 13 68

Figure S138.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0054

Table S244.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIK3CA MUTATED 0 27 0 25
PIK3CA WILD-TYPE 49 75 4 77

Figure S139.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.23

Table S245.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIK3CA MUTATED 2 43 12
PIK3CA WILD-TYPE 24 136 72
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0081

Table S246.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIK3CA MUTATED 2 16 29 0 10
PIK3CA WILD-TYPE 67 42 83 1 39

Figure S140.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.02

Table S247.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIK3CA MUTATED 1 30 10
PIK3CA WILD-TYPE 17 68 85

Figure S141.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00263 (Fisher's exact test), Q value = 0.049

Table S248.  Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIK3CA MUTATED 0 7 27 7 0
PIK3CA WILD-TYPE 17 27 63 62 1

Figure S142.  Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S249.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
APC MUTATED 10 6 26
APC WILD-TYPE 70 49 126
'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.6

Table S250.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
APC MUTATED 19 3 9
APC WILD-TYPE 102 34 77
'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.13

Table S251.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
APC MUTATED 30 3 5
APC WILD-TYPE 134 10 75

Figure S143.  Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.011

Table S252.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
APC MUTATED 6 27 0 5
APC WILD-TYPE 43 75 4 97

Figure S144.  Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.019

Table S253.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
APC MUTATED 3 36 3
APC WILD-TYPE 23 143 81

Figure S145.  Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.05

Table S254.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
APC MUTATED 10 16 15 0 1
APC WILD-TYPE 59 42 97 1 48

Figure S146.  Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00261 (Fisher's exact test), Q value = 0.049

Table S255.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
APC MUTATED 3 19 4
APC WILD-TYPE 15 79 91

Figure S147.  Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.034

Table S256.  Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
APC MUTATED 3 4 18 1 0
APC WILD-TYPE 14 30 72 68 1

Figure S148.  Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S257.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NLK MUTATED 1 0 11
NLK WILD-TYPE 79 55 141

Figure S149.  Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.27

Table S258.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NLK MUTATED 8 0 1
NLK WILD-TYPE 113 37 85
'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NLK MUTATED 7 0 3
NLK WILD-TYPE 157 13 77
'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S260.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NLK MUTATED 1 7 0 2
NLK WILD-TYPE 48 95 4 100
'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S261.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NLK MUTATED 0 11 1
NLK WILD-TYPE 26 168 83
'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S262.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NLK MUTATED 0 6 6 0 0
NLK WILD-TYPE 69 52 106 1 49

Figure S150.  Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.21

Table S263.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NLK MUTATED 0 8 1
NLK WILD-TYPE 18 90 94

Figure S151.  Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.27

Table S264.  Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NLK MUTATED 0 3 6 0 0
NLK WILD-TYPE 17 31 84 69 1
'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.27

Table S265.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
POLM MUTATED 1 0 9
POLM WILD-TYPE 79 55 143
'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S266.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
POLM MUTATED 7 0 1
POLM WILD-TYPE 114 37 85
'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.25

Table S267.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
POLM MUTATED 7 2 1
POLM WILD-TYPE 157 11 79
'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S268.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
POLM MUTATED 1 7 0 2
POLM WILD-TYPE 48 95 4 100
'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.18

Table S269.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
POLM MUTATED 0 10 0
POLM WILD-TYPE 26 169 84

Figure S152.  Get High-res Image Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00364 (Fisher's exact test), Q value = 0.057

Table S270.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
POLM MUTATED 0 7 3 0 0
POLM WILD-TYPE 69 51 109 1 49

Figure S153.  Get High-res Image Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.2

Table S271.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
POLM MUTATED 0 6 0
POLM WILD-TYPE 18 92 95

Figure S154.  Get High-res Image Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S272.  Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
POLM MUTATED 0 2 4 0 0
POLM WILD-TYPE 17 32 86 69 1
'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S273.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TMEM41A MUTATED 0 0 6
TMEM41A WILD-TYPE 80 55 146
'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S274.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TMEM41A MUTATED 5 0 0
TMEM41A WILD-TYPE 116 37 86
'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.86

Table S275.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TMEM41A MUTATED 5 0 1
TMEM41A WILD-TYPE 159 13 79
'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S276.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TMEM41A MUTATED 0 5 0 1
TMEM41A WILD-TYPE 49 97 4 101
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.91

Table S277.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TMEM41A MUTATED 0 5 1
TMEM41A WILD-TYPE 26 174 83
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.68

Table S278.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TMEM41A MUTATED 0 2 3 0 1
TMEM41A WILD-TYPE 69 56 109 1 48
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.64

Table S279.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TMEM41A MUTATED 0 4 1
TMEM41A WILD-TYPE 18 94 94
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S280.  Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TMEM41A MUTATED 0 1 3 1 0
TMEM41A WILD-TYPE 17 33 87 68 1
'WBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.41

Table S281.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WBP1 MUTATED 1 0 7
WBP1 WILD-TYPE 79 55 145
'WBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S282.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WBP1 MUTATED 6 0 2
WBP1 WILD-TYPE 115 37 84
'WBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S283.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WBP1 MUTATED 6 0 1
WBP1 WILD-TYPE 158 13 79
'WBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S284.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WBP1 MUTATED 0 5 0 2
WBP1 WILD-TYPE 49 97 4 100
'WBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.28

Table S285.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WBP1 MUTATED 0 8 0
WBP1 WILD-TYPE 26 171 84
'WBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00792 (Fisher's exact test), Q value = 0.087

Table S286.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WBP1 MUTATED 0 6 2 0 0
WBP1 WILD-TYPE 69 52 110 1 49

Figure S155.  Get High-res Image Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S287.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WBP1 MUTATED 0 6 1
WBP1 WILD-TYPE 18 92 94
'WBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S288.  Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WBP1 MUTATED 0 2 5 0 0
WBP1 WILD-TYPE 17 32 85 69 1
'KIAA0182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00784 (Fisher's exact test), Q value = 0.087

Table S289.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0182 MUTATED 1 2 17
KIAA0182 WILD-TYPE 79 53 135

Figure S156.  Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.19

Table S290.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0182 MUTATED 10 3 1
KIAA0182 WILD-TYPE 111 34 85

Figure S157.  Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S291.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0182 MUTATED 14 0 2
KIAA0182 WILD-TYPE 150 13 78
'KIAA0182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00864 (Fisher's exact test), Q value = 0.092

Table S292.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0182 MUTATED 1 13 0 2
KIAA0182 WILD-TYPE 48 89 4 100

Figure S158.  Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.066

Table S293.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0182 MUTATED 0 19 1
KIAA0182 WILD-TYPE 26 160 83

Figure S159.  Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.013

Table S294.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0182 MUTATED 2 12 6 0 0
KIAA0182 WILD-TYPE 67 46 106 1 49

Figure S160.  Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S295.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0182 MUTATED 0 7 4
KIAA0182 WILD-TYPE 18 91 91
'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.26

Table S296.  Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0182 MUTATED 1 5 4 1 0
KIAA0182 WILD-TYPE 16 29 86 68 1
'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.23

Table S297.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SNAPC2 MUTATED 0 2 9
SNAPC2 WILD-TYPE 80 53 143
'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.18

Table S298.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SNAPC2 MUTATED 9 0 1
SNAPC2 WILD-TYPE 112 37 85

Figure S161.  Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S299.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SNAPC2 MUTATED 9 0 1
SNAPC2 WILD-TYPE 155 13 79
'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S300.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SNAPC2 MUTATED 0 9 0 1
SNAPC2 WILD-TYPE 49 93 4 101

Figure S162.  Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.4

Table S301.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SNAPC2 MUTATED 0 10 1
SNAPC2 WILD-TYPE 26 169 83
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.19

Table S302.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SNAPC2 MUTATED 0 6 4 0 1
SNAPC2 WILD-TYPE 69 52 108 1 48

Figure S163.  Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.21

Table S303.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SNAPC2 MUTATED 0 8 1
SNAPC2 WILD-TYPE 18 90 94

Figure S164.  Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S304.  Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SNAPC2 MUTATED 0 2 6 1 0
SNAPC2 WILD-TYPE 17 32 84 68 1
'C1QTNF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S305.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C1QTNF5 MUTATED 0 1 7
C1QTNF5 WILD-TYPE 80 54 145
'C1QTNF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S306.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C1QTNF5 MUTATED 5 0 0
C1QTNF5 WILD-TYPE 116 37 86
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.45

Table S307.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C1QTNF5 MUTATED 6 0 0
C1QTNF5 WILD-TYPE 158 13 80
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S308.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C1QTNF5 MUTATED 0 5 0 1
C1QTNF5 WILD-TYPE 49 97 4 101
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S309.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C1QTNF5 MUTATED 0 7 1
C1QTNF5 WILD-TYPE 26 172 83
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00649 (Fisher's exact test), Q value = 0.08

Table S310.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C1QTNF5 MUTATED 0 6 1 0 1
C1QTNF5 WILD-TYPE 69 52 111 1 48

Figure S165.  Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S311.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C1QTNF5 MUTATED 0 3 1
C1QTNF5 WILD-TYPE 18 95 94
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C1QTNF5 MUTATED 0 1 2 1 0
C1QTNF5 WILD-TYPE 17 33 88 68 1
'AOC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S313.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AOC3 MUTATED 4 1 8
AOC3 WILD-TYPE 76 54 144
'AOC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S314.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AOC3 MUTATED 7 3 1
AOC3 WILD-TYPE 114 34 85
'AOC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S315.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AOC3 MUTATED 10 0 2
AOC3 WILD-TYPE 154 13 78
'AOC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S316.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AOC3 MUTATED 2 7 0 3
AOC3 WILD-TYPE 47 95 4 99
'AOC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S317.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AOC3 MUTATED 2 9 2
AOC3 WILD-TYPE 24 170 82
'AOC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 0.29

Table S318.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AOC3 MUTATED 4 6 2 0 1
AOC3 WILD-TYPE 65 52 110 1 48
'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S319.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AOC3 MUTATED 0 6 3
AOC3 WILD-TYPE 18 92 92
'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.19

Table S320.  Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AOC3 MUTATED 2 4 2 1 0
AOC3 WILD-TYPE 15 30 88 68 1

Figure S166.  Get High-res Image Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S321.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CIC MUTATED 0 3 23
CIC WILD-TYPE 80 52 129

Figure S167.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.18

Table S322.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CIC MUTATED 15 1 3
CIC WILD-TYPE 106 36 83

Figure S168.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.89

Table S323.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CIC MUTATED 15 1 5
CIC WILD-TYPE 149 12 75
'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.13

Table S324.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CIC MUTATED 0 14 0 7
CIC WILD-TYPE 49 88 4 95

Figure S169.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S325.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CIC MUTATED 0 23 3
CIC WILD-TYPE 26 156 81

Figure S170.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S326.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CIC MUTATED 0 14 11 0 1
CIC WILD-TYPE 69 44 101 1 48

Figure S171.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0062 (Fisher's exact test), Q value = 0.078

Table S327.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CIC MUTATED 0 13 2
CIC WILD-TYPE 18 85 93

Figure S172.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.15

Table S328.  Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CIC MUTATED 0 7 6 2 0
CIC WILD-TYPE 17 27 84 67 1

Figure S173.  Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.022

Table S329.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HLA-B MUTATED 0 0 14
HLA-B WILD-TYPE 80 55 138

Figure S174.  Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.032

Table S330.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HLA-B MUTATED 11 0 0
HLA-B WILD-TYPE 110 37 86

Figure S175.  Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S331.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HLA-B MUTATED 10 0 2
HLA-B WILD-TYPE 154 13 78
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S332.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HLA-B MUTATED 0 8 0 4
HLA-B WILD-TYPE 49 94 4 98
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S333.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HLA-B MUTATED 1 11 2
HLA-B WILD-TYPE 25 168 82
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.19

Table S334.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HLA-B MUTATED 0 6 7 0 1
HLA-B WILD-TYPE 69 52 105 1 48

Figure S176.  Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S335.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HLA-B MUTATED 0 6 3
HLA-B WILD-TYPE 18 92 92
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S336.  Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HLA-B MUTATED 0 1 6 2 0
HLA-B WILD-TYPE 17 33 84 67 1
'CD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.065

Table S337.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CD4 MUTATED 1 0 14
CD4 WILD-TYPE 79 55 138

Figure S177.  Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.29

Table S338.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CD4 MUTATED 11 1 2
CD4 WILD-TYPE 110 36 84
'CD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S339.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CD4 MUTATED 12 0 2
CD4 WILD-TYPE 152 13 78
'CD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.15

Table S340.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CD4 MUTATED 0 11 0 3
CD4 WILD-TYPE 49 91 4 99

Figure S178.  Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.28

Table S341.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CD4 MUTATED 1 13 1
CD4 WILD-TYPE 25 166 83
'CD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S342.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CD4 MUTATED 2 4 8 0 1
CD4 WILD-TYPE 67 54 104 1 48
'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.23

Table S343.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CD4 MUTATED 1 10 2
CD4 WILD-TYPE 17 88 93
'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.25

Table S344.  Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CD4 MUTATED 0 5 7 1 0
CD4 WILD-TYPE 17 29 83 68 1
'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00099 (Fisher's exact test), Q value = 0.026

Table S345.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZMYM4 MUTATED 0 1 16
ZMYM4 WILD-TYPE 80 54 136

Figure S179.  Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.23

Table S346.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZMYM4 MUTATED 10 1 1
ZMYM4 WILD-TYPE 111 36 85
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S347.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZMYM4 MUTATED 13 0 2
ZMYM4 WILD-TYPE 151 13 78
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S348.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZMYM4 MUTATED 1 10 0 4
ZMYM4 WILD-TYPE 48 92 4 98
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S349.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZMYM4 MUTATED 0 16 1
ZMYM4 WILD-TYPE 26 163 83

Figure S180.  Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S350.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZMYM4 MUTATED 1 6 9 0 1
ZMYM4 WILD-TYPE 68 52 103 1 48
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S351.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZMYM4 MUTATED 1 6 4
ZMYM4 WILD-TYPE 17 92 91
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S352.  Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZMYM4 MUTATED 0 1 9 1 0
ZMYM4 WILD-TYPE 17 33 81 68 1
'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.056

Table S353.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF43 MUTATED 3 4 27
ZNF43 WILD-TYPE 77 51 125

Figure S181.  Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00477 (Fisher's exact test), Q value = 0.067

Table S354.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF43 MUTATED 22 2 4
ZNF43 WILD-TYPE 99 35 82

Figure S182.  Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S355.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF43 MUTATED 25 0 7
ZNF43 WILD-TYPE 139 13 73
'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0058 (Fisher's exact test), Q value = 0.075

Table S356.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF43 MUTATED 1 21 0 10
ZNF43 WILD-TYPE 48 81 4 92

Figure S183.  Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.016

Table S357.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF43 MUTATED 0 31 3
ZNF43 WILD-TYPE 26 148 81

Figure S184.  Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S358.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF43 MUTATED 2 14 18 0 0
ZNF43 WILD-TYPE 67 44 94 1 49

Figure S185.  Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S359.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF43 MUTATED 1 16 7
ZNF43 WILD-TYPE 17 82 88
'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.15

Table S360.  Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF43 MUTATED 1 5 16 2 0
ZNF43 WILD-TYPE 16 29 74 67 1

Figure S186.  Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NT5M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S361.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NT5M MUTATED 0 0 5
NT5M WILD-TYPE 80 55 147
'NT5M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.57

Table S362.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NT5M MUTATED 3 0 0
NT5M WILD-TYPE 118 37 86
'NT5M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NT5M MUTATED 3 0 1
NT5M WILD-TYPE 161 13 79
'NT5M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.7

Table S364.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NT5M MUTATED 0 3 0 1
NT5M WILD-TYPE 49 99 4 101
'NT5M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S365.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NT5M MUTATED 0 5 0
NT5M WILD-TYPE 26 174 84
'NT5M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S366.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NT5M MUTATED 0 2 3 0 0
NT5M WILD-TYPE 69 56 109 1 49
'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S367.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NT5M MUTATED 0 3 0
NT5M WILD-TYPE 18 95 95
'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.35

Table S368.  Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NT5M MUTATED 0 2 1 0 0
NT5M WILD-TYPE 17 32 89 69 1
'GBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.12

Table S369.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GBP7 MUTATED 0 0 9
GBP7 WILD-TYPE 80 55 143

Figure S187.  Get High-res Image Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S370.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GBP7 MUTATED 5 1 0
GBP7 WILD-TYPE 116 36 86
'GBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S371.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GBP7 MUTATED 5 0 2
GBP7 WILD-TYPE 159 13 78
'GBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S372.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GBP7 MUTATED 0 5 0 2
GBP7 WILD-TYPE 49 97 4 100
'GBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S373.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GBP7 MUTATED 0 6 3
GBP7 WILD-TYPE 26 173 81
'GBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S374.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GBP7 MUTATED 1 4 2 0 2
GBP7 WILD-TYPE 68 54 110 1 47
'GBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S375.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GBP7 MUTATED 0 3 3
GBP7 WILD-TYPE 18 95 92
'GBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.99

Table S376.  Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GBP7 MUTATED 0 1 2 3 0
GBP7 WILD-TYPE 17 33 88 66 1
'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S377.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BCL9L MUTATED 2 2 19
BCL9L WILD-TYPE 78 53 133

Figure S188.  Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S378.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BCL9L MUTATED 16 0 4
BCL9L WILD-TYPE 105 37 82

Figure S189.  Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.25

Table S379.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BCL9L MUTATED 19 0 3
BCL9L WILD-TYPE 145 13 77
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00367 (Fisher's exact test), Q value = 0.057

Table S380.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BCL9L MUTATED 2 17 0 3
BCL9L WILD-TYPE 47 85 4 99

Figure S190.  Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.14

Table S381.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BCL9L MUTATED 0 21 3
BCL9L WILD-TYPE 26 158 81

Figure S191.  Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S382.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BCL9L MUTATED 2 10 11 0 1
BCL9L WILD-TYPE 67 48 101 1 48

Figure S192.  Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.26

Table S383.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BCL9L MUTATED 1 13 4
BCL9L WILD-TYPE 17 85 91
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0797 (Fisher's exact test), Q value = 0.27

Table S384.  Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BCL9L MUTATED 0 5 11 2 0
BCL9L WILD-TYPE 17 29 79 67 1
'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.16

Table S385.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TBX4 MUTATED 0 1 10
TBX4 WILD-TYPE 80 54 142

Figure S193.  Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.27

Table S386.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TBX4 MUTATED 8 0 1
TBX4 WILD-TYPE 113 37 85
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.68

Table S387.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TBX4 MUTATED 7 0 1
TBX4 WILD-TYPE 157 13 79
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 0.26

Table S388.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TBX4 MUTATED 0 7 0 1
TBX4 WILD-TYPE 49 95 4 101
'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.4

Table S389.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TBX4 MUTATED 0 10 1
TBX4 WILD-TYPE 26 169 83
'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S390.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TBX4 MUTATED 0 6 5 0 0
TBX4 WILD-TYPE 69 52 107 1 49

Figure S194.  Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S391.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TBX4 MUTATED 0 6 1
TBX4 WILD-TYPE 18 92 94
'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S392.  Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TBX4 MUTATED 0 3 3 1 0
TBX4 WILD-TYPE 17 31 87 68 1
'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.18

Table S393.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C7ORF50 MUTATED 0 1 9
C7ORF50 WILD-TYPE 80 54 143

Figure S195.  Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.062

Table S394.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C7ORF50 MUTATED 10 0 0
C7ORF50 WILD-TYPE 111 37 86

Figure S196.  Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S395.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C7ORF50 MUTATED 7 0 0
C7ORF50 WILD-TYPE 157 13 80
'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S396.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C7ORF50 MUTATED 0 7 0 0
C7ORF50 WILD-TYPE 49 95 4 102

Figure S197.  Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S397.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C7ORF50 MUTATED 0 9 1
C7ORF50 WILD-TYPE 26 170 83
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00492 (Fisher's exact test), Q value = 0.068

Table S398.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C7ORF50 MUTATED 0 7 2 0 1
C7ORF50 WILD-TYPE 69 51 110 1 48

Figure S198.  Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S399.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C7ORF50 MUTATED 0 9 1
C7ORF50 WILD-TYPE 18 89 94

Figure S199.  Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.25

Table S400.  Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C7ORF50 MUTATED 0 5 4 1 0
C7ORF50 WILD-TYPE 17 29 86 68 1
'DDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.25

Table S401.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DDC MUTATED 0 1 8
DDC WILD-TYPE 80 54 144
'DDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DDC MUTATED 3 1 2
DDC WILD-TYPE 118 36 84
'DDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.88

Table S403.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DDC MUTATED 4 0 3
DDC WILD-TYPE 160 13 77
'DDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S404.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DDC MUTATED 0 4 0 3
DDC WILD-TYPE 49 98 4 99
'DDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.3

Table S405.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DDC MUTATED 1 8 0
DDC WILD-TYPE 25 171 84
'DDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S406.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DDC MUTATED 0 6 3 0 0
DDC WILD-TYPE 69 52 109 1 49

Figure S200.  Get High-res Image Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S407.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DDC MUTATED 0 5 1
DDC WILD-TYPE 18 93 94
'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.45

Table S408.  Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DDC MUTATED 0 1 5 0 0
DDC WILD-TYPE 17 33 85 69 1
'ADAM28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.2

Table S409.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ADAM28 MUTATED 1 1 12
ADAM28 WILD-TYPE 79 54 140

Figure S201.  Get High-res Image Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAM28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S410.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ADAM28 MUTATED 9 1 0
ADAM28 WILD-TYPE 112 36 86

Figure S202.  Get High-res Image Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S411.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ADAM28 MUTATED 10 1 1
ADAM28 WILD-TYPE 154 12 79
'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.15

Table S412.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ADAM28 MUTATED 1 10 0 1
ADAM28 WILD-TYPE 48 92 4 101

Figure S203.  Get High-res Image Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.26

Table S413.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ADAM28 MUTATED 0 13 1
ADAM28 WILD-TYPE 26 166 83
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0565 (Fisher's exact test), Q value = 0.23

Table S414.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ADAM28 MUTATED 1 6 7 0 0
ADAM28 WILD-TYPE 68 52 105 1 49
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.27

Table S415.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ADAM28 MUTATED 0 7 1
ADAM28 WILD-TYPE 18 91 94
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S416.  Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ADAM28 MUTATED 0 2 5 1 0
ADAM28 WILD-TYPE 17 32 85 68 1
'IWS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.18

Table S417.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IWS1 MUTATED 0 2 10
IWS1 WILD-TYPE 80 53 142

Figure S204.  Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IWS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S418.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IWS1 MUTATED 7 0 1
IWS1 WILD-TYPE 114 37 85
'IWS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.19

Table S419.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IWS1 MUTATED 9 1 0
IWS1 WILD-TYPE 155 12 80

Figure S205.  Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S420.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IWS1 MUTATED 0 7 0 3
IWS1 WILD-TYPE 49 95 4 99
'IWS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.14

Table S421.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IWS1 MUTATED 0 12 0
IWS1 WILD-TYPE 26 167 84

Figure S206.  Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.2

Table S422.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IWS1 MUTATED 0 6 5 0 1
IWS1 WILD-TYPE 69 52 107 1 48

Figure S207.  Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S423.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IWS1 MUTATED 0 4 1
IWS1 WILD-TYPE 18 94 94
'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S424.  Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IWS1 MUTATED 0 2 2 1 0
IWS1 WILD-TYPE 17 32 88 68 1
'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.57

Table S425.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MUC6 MUTATED 7 5 22
MUC6 WILD-TYPE 73 50 130
'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S426.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MUC6 MUTATED 18 4 6
MUC6 WILD-TYPE 103 33 80
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.2

Table S427.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MUC6 MUTATED 24 2 4
MUC6 WILD-TYPE 140 11 76

Figure S208.  Get High-res Image Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.14

Table S428.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MUC6 MUTATED 6 19 0 5
MUC6 WILD-TYPE 43 83 4 97

Figure S209.  Get High-res Image Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.27

Table S429.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MUC6 MUTATED 2 27 5
MUC6 WILD-TYPE 24 152 79
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 0.26

Table S430.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MUC6 MUTATED 7 10 16 0 1
MUC6 WILD-TYPE 62 48 96 1 48
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S431.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MUC6 MUTATED 3 14 7
MUC6 WILD-TYPE 15 84 88
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S432.  Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MUC6 MUTATED 2 3 15 4 0
MUC6 WILD-TYPE 15 31 75 65 1
'GXYLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S433.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GXYLT1 MUTATED 0 1 11
GXYLT1 WILD-TYPE 80 54 141

Figure S210.  Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GXYLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.38

Table S434.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GXYLT1 MUTATED 9 0 3
GXYLT1 WILD-TYPE 112 37 83
'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.84

Table S435.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GXYLT1 MUTATED 9 0 2
GXYLT1 WILD-TYPE 155 13 78
'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S436.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GXYLT1 MUTATED 0 8 0 3
GXYLT1 WILD-TYPE 49 94 4 99
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S437.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GXYLT1 MUTATED 0 10 2
GXYLT1 WILD-TYPE 26 169 82
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S438.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GXYLT1 MUTATED 1 6 4 0 1
GXYLT1 WILD-TYPE 68 52 108 1 48
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.7

Table S439.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GXYLT1 MUTATED 0 7 4
GXYLT1 WILD-TYPE 18 91 91
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.67

Table S440.  Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GXYLT1 MUTATED 0 2 7 2 0
GXYLT1 WILD-TYPE 17 32 83 67 1
'HLA-C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00899 (Fisher's exact test), Q value = 0.095

Table S441.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HLA-C MUTATED 0 1 12
HLA-C WILD-TYPE 80 54 140

Figure S211.  Get High-res Image Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S442.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HLA-C MUTATED 6 0 2
HLA-C WILD-TYPE 115 37 84
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S443.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HLA-C MUTATED 10 0 2
HLA-C WILD-TYPE 154 13 78
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S444.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HLA-C MUTATED 1 9 0 2
HLA-C WILD-TYPE 48 93 4 100
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S445.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HLA-C MUTATED 1 11 1
HLA-C WILD-TYPE 25 168 83
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S446.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HLA-C MUTATED 1 4 7 0 1
HLA-C WILD-TYPE 68 54 105 1 48
'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S447.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HLA-C MUTATED 1 6 1
HLA-C WILD-TYPE 17 92 94
'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S448.  Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HLA-C MUTATED 0 2 5 1 0
HLA-C WILD-TYPE 17 32 85 68 1
'PRSS36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S449.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRSS36 MUTATED 0 1 10
PRSS36 WILD-TYPE 80 54 142

Figure S212.  Get High-res Image Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRSS36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.22

Table S450.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRSS36 MUTATED 6 0 0
PRSS36 WILD-TYPE 115 37 86
'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S451.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRSS36 MUTATED 6 0 2
PRSS36 WILD-TYPE 158 13 78
'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S452.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRSS36 MUTATED 0 6 0 2
PRSS36 WILD-TYPE 49 96 4 100
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.97

Table S453.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRSS36 MUTATED 0 8 3
PRSS36 WILD-TYPE 26 171 81
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0945 (Fisher's exact test), Q value = 0.28

Table S454.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRSS36 MUTATED 1 6 3 0 1
PRSS36 WILD-TYPE 68 52 109 1 48
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S455.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRSS36 MUTATED 0 4 2
PRSS36 WILD-TYPE 18 94 93
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S456.  Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRSS36 MUTATED 0 2 2 2 0
PRSS36 WILD-TYPE 17 32 88 67 1
'ZFHX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0099

Table S457.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZFHX4 MUTATED 7 4 41
ZFHX4 WILD-TYPE 73 51 111

Figure S213.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S458.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZFHX4 MUTATED 29 4 8
ZFHX4 WILD-TYPE 92 33 78

Figure S214.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S459.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZFHX4 MUTATED 39 2 7
ZFHX4 WILD-TYPE 125 11 73

Figure S215.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00928 (Fisher's exact test), Q value = 0.097

Table S460.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZFHX4 MUTATED 5 29 1 13
ZFHX4 WILD-TYPE 44 73 3 89

Figure S216.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.015

Table S461.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZFHX4 MUTATED 2 45 6
ZFHX4 WILD-TYPE 24 134 78

Figure S217.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S462.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZFHX4 MUTATED 7 22 23 0 1
ZFHX4 WILD-TYPE 62 36 89 1 48

Figure S218.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 0.21

Table S463.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZFHX4 MUTATED 2 24 11
ZFHX4 WILD-TYPE 16 74 84

Figure S219.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00067 (Fisher's exact test), Q value = 0.021

Table S464.  Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZFHX4 MUTATED 0 12 20 5 0
ZFHX4 WILD-TYPE 17 22 70 64 1

Figure S220.  Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S465.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C6ORF89 MUTATED 1 0 7
C6ORF89 WILD-TYPE 79 55 145
'C6ORF89 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00742 (Fisher's exact test), Q value = 0.086

Table S466.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C6ORF89 MUTATED 9 0 0
C6ORF89 WILD-TYPE 112 37 86

Figure S221.  Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.27

Table S467.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C6ORF89 MUTATED 9 0 0
C6ORF89 WILD-TYPE 155 13 80
'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S468.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C6ORF89 MUTATED 1 8 0 0
C6ORF89 WILD-TYPE 48 94 4 102

Figure S222.  Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.27

Table S469.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C6ORF89 MUTATED 0 9 0
C6ORF89 WILD-TYPE 26 170 84
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 0.27

Table S470.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C6ORF89 MUTATED 0 4 5 0 0
C6ORF89 WILD-TYPE 69 54 107 1 49
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.28

Table S471.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C6ORF89 MUTATED 1 7 1
C6ORF89 WILD-TYPE 17 91 94
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.21

Table S472.  Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C6ORF89 MUTATED 1 4 4 0 0
C6ORF89 WILD-TYPE 16 30 86 69 1

Figure S223.  Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC16A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.23

Table S473.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC16A6 MUTATED 0 0 7
SLC16A6 WILD-TYPE 80 55 145
'SLC16A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S474.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC16A6 MUTATED 5 0 1
SLC16A6 WILD-TYPE 116 37 85
'SLC16A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S475.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC16A6 MUTATED 5 0 2
SLC16A6 WILD-TYPE 159 13 78
'SLC16A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S476.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC16A6 MUTATED 0 5 0 2
SLC16A6 WILD-TYPE 49 97 4 100
'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S477.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC16A6 MUTATED 0 6 1
SLC16A6 WILD-TYPE 26 173 83
'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S478.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC16A6 MUTATED 0 1 6 0 0
SLC16A6 WILD-TYPE 69 57 106 1 49
'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.26

Table S479.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC16A6 MUTATED 1 4 0
SLC16A6 WILD-TYPE 17 94 95
'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S480.  Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC16A6 MUTATED 0 2 3 0 0
SLC16A6 WILD-TYPE 17 32 87 69 1
'PAFAH1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 0.072

Table S481.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PAFAH1B1 MUTATED 0 0 11
PAFAH1B1 WILD-TYPE 80 55 141

Figure S224.  Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.27

Table S482.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PAFAH1B1 MUTATED 8 0 1
PAFAH1B1 WILD-TYPE 113 37 85
'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.84

Table S483.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PAFAH1B1 MUTATED 9 0 2
PAFAH1B1 WILD-TYPE 155 13 78
'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.19

Table S484.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PAFAH1B1 MUTATED 0 9 0 2
PAFAH1B1 WILD-TYPE 49 93 4 100

Figure S225.  Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S485.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PAFAH1B1 MUTATED 0 11 1
PAFAH1B1 WILD-TYPE 26 168 83
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S486.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PAFAH1B1 MUTATED 1 6 4 0 1
PAFAH1B1 WILD-TYPE 68 52 108 1 48
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.28

Table S487.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PAFAH1B1 MUTATED 1 7 1
PAFAH1B1 WILD-TYPE 17 91 94
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S488.  Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PAFAH1B1 MUTATED 0 3 5 1 0
PAFAH1B1 WILD-TYPE 17 31 85 68 1
'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S489.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WDR5 MUTATED 1 0 6
WDR5 WILD-TYPE 79 55 146
'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.77

Table S490.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WDR5 MUTATED 2 1 1
WDR5 WILD-TYPE 119 36 85
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S491.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WDR5 MUTATED 2 1 3
WDR5 WILD-TYPE 162 12 77
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S492.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WDR5 MUTATED 0 2 0 4
WDR5 WILD-TYPE 49 100 4 98
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S493.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WDR5 MUTATED 0 6 1
WDR5 WILD-TYPE 26 173 83
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S494.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WDR5 MUTATED 1 1 5 0 0
WDR5 WILD-TYPE 68 57 107 1 49
'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S495.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WDR5 MUTATED 0 4 0
WDR5 WILD-TYPE 18 94 95
'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S496.  Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WDR5 MUTATED 0 2 2 0 0
WDR5 WILD-TYPE 17 32 88 69 1
'DDX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.013

Table S497.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DDX6 MUTATED 0 0 15
DDX6 WILD-TYPE 80 55 137

Figure S226.  Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S498.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DDX6 MUTATED 6 0 3
DDX6 WILD-TYPE 115 37 83
'DDX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S499.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DDX6 MUTATED 8 1 2
DDX6 WILD-TYPE 156 12 78
'DDX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S500.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DDX6 MUTATED 0 8 0 3
DDX6 WILD-TYPE 49 94 4 99
'DDX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.59

Table S501.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DDX6 MUTATED 0 12 3
DDX6 WILD-TYPE 26 167 81
'DDX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00751 (Fisher's exact test), Q value = 0.086

Table S502.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DDX6 MUTATED 1 9 4 0 1
DDX6 WILD-TYPE 68 49 108 1 48

Figure S227.  Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DDX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DDX6 MUTATED 0 5 4
DDX6 WILD-TYPE 18 93 91
'DDX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S504.  Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DDX6 MUTATED 0 1 5 3 0
DDX6 WILD-TYPE 17 33 85 66 1
'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S505.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C9ORF131 MUTATED 1 0 12
C9ORF131 WILD-TYPE 79 55 140

Figure S228.  Get High-res Image Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.27

Table S506.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C9ORF131 MUTATED 8 0 1
C9ORF131 WILD-TYPE 113 37 85
'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S507.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C9ORF131 MUTATED 8 0 2
C9ORF131 WILD-TYPE 156 13 78
'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.26

Table S508.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C9ORF131 MUTATED 0 8 0 2
C9ORF131 WILD-TYPE 49 94 4 100
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S509.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C9ORF131 MUTATED 1 10 2
C9ORF131 WILD-TYPE 25 169 82
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S510.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C9ORF131 MUTATED 1 5 7 0 0
C9ORF131 WILD-TYPE 68 53 105 1 49
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S511.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C9ORF131 MUTATED 1 4 2
C9ORF131 WILD-TYPE 17 94 93
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S512.  Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C9ORF131 MUTATED 0 2 4 1 0
C9ORF131 WILD-TYPE 17 32 86 68 1
'PLOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.23

Table S513.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLOD3 MUTATED 2 0 11
PLOD3 WILD-TYPE 78 55 141
'PLOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S514.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLOD3 MUTATED 8 2 2
PLOD3 WILD-TYPE 113 35 84
'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S515.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLOD3 MUTATED 11 1 2
PLOD3 WILD-TYPE 153 12 78
'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S516.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLOD3 MUTATED 2 8 0 4
PLOD3 WILD-TYPE 47 94 4 98
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S517.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLOD3 MUTATED 2 11 1
PLOD3 WILD-TYPE 24 168 83
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S518.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLOD3 MUTATED 2 6 5 0 1
PLOD3 WILD-TYPE 67 52 107 1 48
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.23

Table S519.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLOD3 MUTATED 0 9 2
PLOD3 WILD-TYPE 18 89 93
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.26

Table S520.  Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLOD3 MUTATED 0 5 5 1 0
PLOD3 WILD-TYPE 17 29 85 68 1
'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S521.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF878 MUTATED 0 1 11
ZNF878 WILD-TYPE 80 54 141

Figure S229.  Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00795 (Fisher's exact test), Q value = 0.088

Table S522.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF878 MUTATED 9 0 0
ZNF878 WILD-TYPE 112 37 86

Figure S230.  Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.27

Table S523.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF878 MUTATED 9 0 0
ZNF878 WILD-TYPE 155 13 80
'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.041

Table S524.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF878 MUTATED 0 9 0 0
ZNF878 WILD-TYPE 49 93 4 102

Figure S231.  Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S525.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF878 MUTATED 0 11 1
ZNF878 WILD-TYPE 26 168 83
'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.031

Table S526.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF878 MUTATED 0 8 4 0 0
ZNF878 WILD-TYPE 69 50 108 1 49

Figure S232.  Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S527.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF878 MUTATED 1 6 1
ZNF878 WILD-TYPE 17 92 94
'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.51

Table S528.  Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF878 MUTATED 0 3 4 1 0
ZNF878 WILD-TYPE 17 31 86 68 1
'SPG20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00697 (Fisher's exact test), Q value = 0.083

Table S529.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SPG20 MUTATED 2 1 18
SPG20 WILD-TYPE 78 54 134

Figure S233.  Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPG20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.15

Table S530.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SPG20 MUTATED 12 0 2
SPG20 WILD-TYPE 109 37 84

Figure S234.  Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S531.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SPG20 MUTATED 14 1 4
SPG20 WILD-TYPE 150 12 76
'SPG20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S532.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SPG20 MUTATED 1 12 0 6
SPG20 WILD-TYPE 48 90 4 96
'SPG20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.15

Table S533.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SPG20 MUTATED 0 19 2
SPG20 WILD-TYPE 26 160 82

Figure S235.  Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.046

Table S534.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SPG20 MUTATED 1 11 8 0 1
SPG20 WILD-TYPE 68 47 104 1 48

Figure S236.  Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.23

Table S535.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SPG20 MUTATED 0 9 2
SPG20 WILD-TYPE 18 89 93
'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.26

Table S536.  Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SPG20 MUTATED 0 5 5 1 0
SPG20 WILD-TYPE 17 29 85 68 1
'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0093

Table S537.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C14ORF43 MUTATED 0 1 19
C14ORF43 WILD-TYPE 80 54 133

Figure S237.  Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00662 (Fisher's exact test), Q value = 0.081

Table S538.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C14ORF43 MUTATED 14 0 2
C14ORF43 WILD-TYPE 107 37 84

Figure S238.  Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.98

Table S539.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C14ORF43 MUTATED 11 0 4
C14ORF43 WILD-TYPE 153 13 76
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.19

Table S540.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C14ORF43 MUTATED 0 11 0 4
C14ORF43 WILD-TYPE 49 91 4 98

Figure S239.  Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.17

Table S541.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C14ORF43 MUTATED 0 18 2
C14ORF43 WILD-TYPE 26 161 82

Figure S240.  Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.024

Table S542.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C14ORF43 MUTATED 0 10 9 0 1
C14ORF43 WILD-TYPE 69 48 103 1 48

Figure S241.  Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S543.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C14ORF43 MUTATED 1 11 2
C14ORF43 WILD-TYPE 17 87 93

Figure S242.  Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S544.  Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C14ORF43 MUTATED 0 5 7 2 0
C14ORF43 WILD-TYPE 17 29 83 67 1
'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.013

Table S545.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FLNB MUTATED 0 3 21
FLNB WILD-TYPE 80 52 131

Figure S243.  Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.21

Table S546.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FLNB MUTATED 16 1 4
FLNB WILD-TYPE 105 36 82

Figure S244.  Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S547.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FLNB MUTATED 16 0 4
FLNB WILD-TYPE 148 13 76
'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S548.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FLNB MUTATED 1 15 0 4
FLNB WILD-TYPE 48 87 4 98

Figure S245.  Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.28

Table S549.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FLNB MUTATED 1 20 3
FLNB WILD-TYPE 25 159 81
'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.014

Table S550.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FLNB MUTATED 0 12 10 0 2
FLNB WILD-TYPE 69 46 102 1 47

Figure S246.  Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.12

Table S551.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FLNB MUTATED 2 14 3
FLNB WILD-TYPE 16 84 92

Figure S247.  Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.15

Table S552.  Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FLNB MUTATED 0 8 8 3 0
FLNB WILD-TYPE 17 26 82 66 1

Figure S248.  Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0097

Table S553.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GLI1 MUTATED 0 0 17
GLI1 WILD-TYPE 80 55 135

Figure S249.  Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S554.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GLI1 MUTATED 10 0 1
GLI1 WILD-TYPE 111 37 85

Figure S250.  Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S555.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GLI1 MUTATED 12 1 2
GLI1 WILD-TYPE 152 12 78
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S556.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GLI1 MUTATED 0 12 0 3
GLI1 WILD-TYPE 49 90 4 99

Figure S251.  Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.26

Table S557.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GLI1 MUTATED 0 15 2
GLI1 WILD-TYPE 26 164 82
'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00708 (Fisher's exact test), Q value = 0.084

Table S558.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GLI1 MUTATED 0 8 8 0 1
GLI1 WILD-TYPE 69 50 104 1 48

Figure S252.  Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.13

Table S559.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GLI1 MUTATED 0 9 1
GLI1 WILD-TYPE 18 89 94

Figure S253.  Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S560.  Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GLI1 MUTATED 0 2 7 1 0
GLI1 WILD-TYPE 17 32 83 68 1
'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.95

Table S561.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLAGL2 MUTATED 1 1 4
PLAGL2 WILD-TYPE 79 54 148
'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S562.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLAGL2 MUTATED 5 0 2
PLAGL2 WILD-TYPE 116 37 84
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.7

Table S563.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLAGL2 MUTATED 3 0 3
PLAGL2 WILD-TYPE 161 13 77
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S564.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLAGL2 MUTATED 1 3 0 2
PLAGL2 WILD-TYPE 48 99 4 100
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.93

Table S565.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLAGL2 MUTATED 0 4 3
PLAGL2 WILD-TYPE 26 175 81
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S566.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLAGL2 MUTATED 0 3 3 0 1
PLAGL2 WILD-TYPE 69 55 109 1 48
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S567.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLAGL2 MUTATED 0 4 3
PLAGL2 WILD-TYPE 18 94 92
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 0.91

Table S568.  Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLAGL2 MUTATED 0 2 3 2 0
PLAGL2 WILD-TYPE 17 32 87 67 1
'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 0.097

Table S569.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WNT16 MUTATED 0 1 12
WNT16 WILD-TYPE 80 54 140

Figure S254.  Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S570.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WNT16 MUTATED 8 0 2
WNT16 WILD-TYPE 113 37 84
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S571.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WNT16 MUTATED 10 0 2
WNT16 WILD-TYPE 154 13 78
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.25

Table S572.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WNT16 MUTATED 0 9 0 3
WNT16 WILD-TYPE 49 93 4 99
'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S573.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WNT16 MUTATED 0 13 0
WNT16 WILD-TYPE 26 166 84

Figure S255.  Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S574.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WNT16 MUTATED 0 6 7 0 0
WNT16 WILD-TYPE 69 52 105 1 49

Figure S256.  Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0076 (Fisher's exact test), Q value = 0.086

Table S575.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WNT16 MUTATED 0 8 0
WNT16 WILD-TYPE 18 90 95

Figure S257.  Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S576.  Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WNT16 MUTATED 0 3 5 0 0
WNT16 WILD-TYPE 17 31 85 69 1
'IRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.19

Table S577.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IRF2 MUTATED 2 0 12
IRF2 WILD-TYPE 78 55 140

Figure S258.  Get High-res Image Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.5

Table S578.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IRF2 MUTATED 7 0 2
IRF2 WILD-TYPE 114 37 84
'IRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S579.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IRF2 MUTATED 8 0 3
IRF2 WILD-TYPE 156 13 77
'IRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.87

Table S580.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IRF2 MUTATED 1 6 0 4
IRF2 WILD-TYPE 48 96 4 98
'IRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S581.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IRF2 MUTATED 1 12 1
IRF2 WILD-TYPE 25 167 83
'IRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 0.23

Table S582.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IRF2 MUTATED 1 6 7 0 0
IRF2 WILD-TYPE 68 52 105 1 49
'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 0.86

Table S583.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IRF2 MUTATED 1 4 3
IRF2 WILD-TYPE 17 94 92
'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.56

Table S584.  Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IRF2 MUTATED 0 1 6 1 0
IRF2 WILD-TYPE 17 33 84 68 1
'SPTY2D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S585.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SPTY2D1 MUTATED 2 2 11
SPTY2D1 WILD-TYPE 78 53 141
'SPTY2D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S586.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SPTY2D1 MUTATED 9 1 3
SPTY2D1 WILD-TYPE 112 36 83
'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S587.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SPTY2D1 MUTATED 10 1 1
SPTY2D1 WILD-TYPE 154 12 79
'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S588.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SPTY2D1 MUTATED 1 9 0 2
SPTY2D1 WILD-TYPE 48 93 4 100
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S589.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SPTY2D1 MUTATED 0 13 2
SPTY2D1 WILD-TYPE 26 166 82
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.23

Table S590.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SPTY2D1 MUTATED 2 7 6 0 0
SPTY2D1 WILD-TYPE 67 51 106 1 49
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.15

Table S591.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SPTY2D1 MUTATED 0 11 2
SPTY2D1 WILD-TYPE 18 87 93

Figure S259.  Get High-res Image Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S592.  Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SPTY2D1 MUTATED 0 4 7 2 0
SPTY2D1 WILD-TYPE 17 30 83 67 1
'GPSM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S593.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPSM3 MUTATED 1 2 9
GPSM3 WILD-TYPE 79 53 143
'GPSM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S594.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPSM3 MUTATED 7 1 1
GPSM3 WILD-TYPE 114 36 85
'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S595.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPSM3 MUTATED 10 0 1
GPSM3 WILD-TYPE 154 13 79
'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00809 (Fisher's exact test), Q value = 0.088

Table S596.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPSM3 MUTATED 0 10 0 1
GPSM3 WILD-TYPE 49 92 4 101

Figure S260.  Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.19

Table S597.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPSM3 MUTATED 1 11 0
GPSM3 WILD-TYPE 25 168 84

Figure S261.  Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.29

Table S598.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPSM3 MUTATED 2 6 4 0 0
GPSM3 WILD-TYPE 67 52 108 1 49
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S599.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPSM3 MUTATED 0 4 1
GPSM3 WILD-TYPE 18 94 94
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S600.  Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPSM3 MUTATED 0 1 4 0 0
GPSM3 WILD-TYPE 17 33 86 69 1
'STAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.18

Table S601.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STAT2 MUTATED 0 1 9
STAT2 WILD-TYPE 80 54 143

Figure S262.  Get High-res Image Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S602.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STAT2 MUTATED 6 0 1
STAT2 WILD-TYPE 115 37 85
'STAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S603.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STAT2 MUTATED 7 0 1
STAT2 WILD-TYPE 157 13 79
'STAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.26

Table S604.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STAT2 MUTATED 0 7 0 1
STAT2 WILD-TYPE 49 95 4 101
'STAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S605.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STAT2 MUTATED 0 9 1
STAT2 WILD-TYPE 26 170 83
'STAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.18

Table S606.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STAT2 MUTATED 0 6 3 0 1
STAT2 WILD-TYPE 69 52 109 1 48

Figure S263.  Get High-res Image Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'STAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S607.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STAT2 MUTATED 1 4 1
STAT2 WILD-TYPE 17 94 94
'STAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S608.  Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STAT2 MUTATED 0 0 5 1 0
STAT2 WILD-TYPE 17 34 85 68 1
'PRRG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.17

Table S609.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRRG3 MUTATED 0 0 8
PRRG3 WILD-TYPE 80 55 144

Figure S264.  Get High-res Image Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRRG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.85

Table S610.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRRG3 MUTATED 3 0 3
PRRG3 WILD-TYPE 118 37 83
'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S611.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRRG3 MUTATED 4 1 1
PRRG3 WILD-TYPE 160 12 79
'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S612.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRRG3 MUTATED 0 3 0 3
PRRG3 WILD-TYPE 49 99 4 99
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.28

Table S613.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRRG3 MUTATED 0 8 0
PRRG3 WILD-TYPE 26 171 84
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S614.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRRG3 MUTATED 0 3 5 0 0
PRRG3 WILD-TYPE 69 55 107 1 49
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S615.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRRG3 MUTATED 0 5 0
PRRG3 WILD-TYPE 18 93 95
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S616.  Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRRG3 MUTATED 0 1 4 0 0
PRRG3 WILD-TYPE 17 33 86 69 1
'TP53BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.38

Table S617.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TP53BP2 MUTATED 1 2 10
TP53BP2 WILD-TYPE 79 53 142
'TP53BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.23

Table S618.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TP53BP2 MUTATED 10 1 1
TP53BP2 WILD-TYPE 111 36 85
'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.29

Table S619.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TP53BP2 MUTATED 12 0 1
TP53BP2 WILD-TYPE 152 13 79
'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.24

Table S620.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TP53BP2 MUTATED 1 10 0 2
TP53BP2 WILD-TYPE 48 92 4 100
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.25

Table S621.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TP53BP2 MUTATED 0 13 1
TP53BP2 WILD-TYPE 26 166 83
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00552 (Fisher's exact test), Q value = 0.072

Table S622.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TP53BP2 MUTATED 0 7 7 0 0
TP53BP2 WILD-TYPE 69 51 105 1 49

Figure S265.  Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S623.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TP53BP2 MUTATED 1 7 2
TP53BP2 WILD-TYPE 17 91 93
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.23

Table S624.  Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TP53BP2 MUTATED 0 3 7 0 0
TP53BP2 WILD-TYPE 17 31 83 69 1
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.015

Table S625.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BCOR MUTATED 0 2 19
BCOR WILD-TYPE 80 53 133

Figure S266.  Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S626.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BCOR MUTATED 10 0 5
BCOR WILD-TYPE 111 37 81
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S627.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BCOR MUTATED 11 1 5
BCOR WILD-TYPE 153 12 75
'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S628.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BCOR MUTATED 1 8 0 8
BCOR WILD-TYPE 48 94 4 94
'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.41

Table S629.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BCOR MUTATED 1 17 3
BCOR WILD-TYPE 25 162 81
'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.27

Table S630.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BCOR MUTATED 1 7 11 0 2
BCOR WILD-TYPE 68 51 101 1 47
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S631.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BCOR MUTATED 1 8 4
BCOR WILD-TYPE 17 90 91
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S632.  Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BCOR MUTATED 0 2 9 2 0
BCOR WILD-TYPE 17 32 81 67 1
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.013

Table S633.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BCORL1 MUTATED 1 0 19
BCORL1 WILD-TYPE 79 55 133

Figure S267.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.19

Table S634.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BCORL1 MUTATED 13 0 4
BCORL1 WILD-TYPE 108 37 82

Figure S268.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S635.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BCORL1 MUTATED 16 1 1
BCORL1 WILD-TYPE 148 12 79

Figure S269.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.032

Table S636.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BCORL1 MUTATED 0 15 0 3
BCORL1 WILD-TYPE 49 87 4 99

Figure S270.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.017

Table S637.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BCORL1 MUTATED 0 20 0
BCORL1 WILD-TYPE 26 159 84

Figure S271.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.014

Table S638.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BCORL1 MUTATED 0 9 11 0 0
BCORL1 WILD-TYPE 69 49 101 1 49

Figure S272.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.012

Table S639.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BCORL1 MUTATED 0 13 0
BCORL1 WILD-TYPE 18 85 95

Figure S273.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00912 (Fisher's exact test), Q value = 0.095

Table S640.  Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BCORL1 MUTATED 0 5 8 0 0
BCORL1 WILD-TYPE 17 29 82 69 1

Figure S274.  Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S641.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RALGAPB MUTATED 4 0 14
RALGAPB WILD-TYPE 76 55 138

Figure S275.  Get High-res Image Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RALGAPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 0.29

Table S642.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RALGAPB MUTATED 11 1 2
RALGAPB WILD-TYPE 110 36 84
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.75

Table S643.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RALGAPB MUTATED 11 0 3
RALGAPB WILD-TYPE 153 13 77
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S644.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RALGAPB MUTATED 2 9 0 3
RALGAPB WILD-TYPE 47 93 4 99
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S645.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RALGAPB MUTATED 1 14 3
RALGAPB WILD-TYPE 25 165 81
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S646.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RALGAPB MUTATED 2 8 6 0 2
RALGAPB WILD-TYPE 67 50 106 1 47
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S647.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RALGAPB MUTATED 2 6 3
RALGAPB WILD-TYPE 16 92 92
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S648.  Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RALGAPB MUTATED 2 3 4 2 0
RALGAPB WILD-TYPE 15 31 86 67 1
'BAX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S649.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BAX MUTATED 0 1 5
BAX WILD-TYPE 80 54 147
'BAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S650.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BAX MUTATED 5 0 0
BAX WILD-TYPE 116 37 86
'BAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S651.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BAX MUTATED 5 0 0
BAX WILD-TYPE 159 13 80
'BAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.24

Table S652.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BAX MUTATED 0 5 0 0
BAX WILD-TYPE 49 97 4 102
'BAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.91

Table S653.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BAX MUTATED 0 5 1
BAX WILD-TYPE 26 174 83
'BAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S654.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BAX MUTATED 0 3 3 0 0
BAX WILD-TYPE 69 55 109 1 49
'BAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S655.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BAX MUTATED 0 3 0
BAX WILD-TYPE 18 95 95
'BAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S656.  Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BAX MUTATED 0 1 2 0 0
BAX WILD-TYPE 17 33 88 69 1
'ATP2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.086

Table S657.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATP2A1 MUTATED 1 0 13
ATP2A1 WILD-TYPE 79 55 139

Figure S276.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00792 (Fisher's exact test), Q value = 0.087

Table S658.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATP2A1 MUTATED 12 0 1
ATP2A1 WILD-TYPE 109 37 85

Figure S277.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S659.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATP2A1 MUTATED 13 1 0
ATP2A1 WILD-TYPE 151 12 80

Figure S278.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.025

Table S660.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATP2A1 MUTATED 0 13 0 1
ATP2A1 WILD-TYPE 49 89 4 101

Figure S279.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.061

Table S661.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATP2A1 MUTATED 0 15 0
ATP2A1 WILD-TYPE 26 164 84

Figure S280.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00318 (Fisher's exact test), Q value = 0.054

Table S662.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATP2A1 MUTATED 1 9 5 0 0
ATP2A1 WILD-TYPE 68 49 107 1 49

Figure S281.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.015

Table S663.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATP2A1 MUTATED 0 12 0
ATP2A1 WILD-TYPE 18 86 95

Figure S282.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.067

Table S664.  Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATP2A1 MUTATED 0 6 6 0 0
ATP2A1 WILD-TYPE 17 28 84 69 1

Figure S283.  Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.057

Table S665.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CCDC88A MUTATED 1 1 17
CCDC88A WILD-TYPE 79 54 135

Figure S284.  Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.15

Table S666.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CCDC88A MUTATED 12 0 2
CCDC88A WILD-TYPE 109 37 84

Figure S285.  Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.76

Table S667.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CCDC88A MUTATED 14 0 5
CCDC88A WILD-TYPE 150 13 75
'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.22

Table S668.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CCDC88A MUTATED 0 12 0 7
CCDC88A WILD-TYPE 49 90 4 95
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.072

Table S669.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CCDC88A MUTATED 0 19 1
CCDC88A WILD-TYPE 26 160 83

Figure S286.  Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S670.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CCDC88A MUTATED 1 9 9 0 1
CCDC88A WILD-TYPE 68 49 103 1 48

Figure S287.  Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.23

Table S671.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CCDC88A MUTATED 1 10 2
CCDC88A WILD-TYPE 17 88 93
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.25

Table S672.  Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CCDC88A MUTATED 0 5 7 1 0
CCDC88A WILD-TYPE 17 29 83 68 1
'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S673.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BTBD7 MUTATED 1 2 15
BTBD7 WILD-TYPE 79 53 137

Figure S288.  Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S674.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BTBD7 MUTATED 12 1 1
BTBD7 WILD-TYPE 109 36 85

Figure S289.  Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S675.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BTBD7 MUTATED 14 0 2
BTBD7 WILD-TYPE 150 13 78
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00152 (Fisher's exact test), Q value = 0.034

Table S676.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BTBD7 MUTATED 0 14 0 2
BTBD7 WILD-TYPE 49 88 4 100

Figure S290.  Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S677.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BTBD7 MUTATED 0 17 1
BTBD7 WILD-TYPE 26 162 83

Figure S291.  Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.026

Table S678.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BTBD7 MUTATED 0 10 7 0 1
BTBD7 WILD-TYPE 69 48 105 1 48

Figure S292.  Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.19

Table S679.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BTBD7 MUTATED 0 10 2
BTBD7 WILD-TYPE 18 88 93

Figure S293.  Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S680.  Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BTBD7 MUTATED 0 4 7 1 0
BTBD7 WILD-TYPE 17 30 83 68 1
'ZC3H18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.21

Table S681.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZC3H18 MUTATED 2 1 14
ZC3H18 WILD-TYPE 78 54 138
'ZC3H18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S682.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZC3H18 MUTATED 12 2 1
ZC3H18 WILD-TYPE 109 35 85

Figure S294.  Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S683.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZC3H18 MUTATED 13 0 3
ZC3H18 WILD-TYPE 151 13 77
'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.2

Table S684.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZC3H18 MUTATED 1 12 0 3
ZC3H18 WILD-TYPE 48 90 4 99

Figure S295.  Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S685.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZC3H18 MUTATED 0 17 1
ZC3H18 WILD-TYPE 26 162 83

Figure S296.  Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.022

Table S686.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZC3H18 MUTATED 2 11 5 0 0
ZC3H18 WILD-TYPE 67 47 107 1 49

Figure S297.  Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S687.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZC3H18 MUTATED 0 11 2
ZC3H18 WILD-TYPE 18 87 93

Figure S298.  Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 0.28

Table S688.  Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZC3H18 MUTATED 1 5 6 1 0
ZC3H18 WILD-TYPE 16 29 84 68 1
'SLC10A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.23

Table S689.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC10A6 MUTATED 0 0 7
SLC10A6 WILD-TYPE 80 55 145
'SLC10A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S690.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC10A6 MUTATED 5 0 1
SLC10A6 WILD-TYPE 116 37 85
'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S691.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC10A6 MUTATED 6 0 2
SLC10A6 WILD-TYPE 158 13 78
'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S692.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC10A6 MUTATED 0 6 0 2
SLC10A6 WILD-TYPE 49 96 4 100
'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.28

Table S693.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC10A6 MUTATED 0 8 0
SLC10A6 WILD-TYPE 26 171 84
'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00748 (Fisher's exact test), Q value = 0.086

Table S694.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC10A6 MUTATED 0 6 2 0 0
SLC10A6 WILD-TYPE 69 52 110 1 49

Figure S299.  Get High-res Image Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.23

Table S695.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC10A6 MUTATED 1 5 0
SLC10A6 WILD-TYPE 17 93 95
'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S696.  Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC10A6 MUTATED 0 2 4 0 0
SLC10A6 WILD-TYPE 17 32 86 69 1
'CR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S697.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CR2 MUTATED 4 1 15
CR2 WILD-TYPE 76 54 137
'CR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.21

Table S698.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CR2 MUTATED 13 3 2
CR2 WILD-TYPE 108 34 84
'CR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S699.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CR2 MUTATED 18 1 1
CR2 WILD-TYPE 146 12 79

Figure S300.  Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.22

Table S700.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CR2 MUTATED 2 14 0 4
CR2 WILD-TYPE 47 88 4 98
'CR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.15

Table S701.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CR2 MUTATED 2 17 1
CR2 WILD-TYPE 24 162 83

Figure S301.  Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.19

Table S702.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CR2 MUTATED 3 8 9 0 0
CR2 WILD-TYPE 66 50 103 1 49

Figure S302.  Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S703.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CR2 MUTATED 1 10 3
CR2 WILD-TYPE 17 88 92
'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S704.  Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CR2 MUTATED 0 6 7 1 0
CR2 WILD-TYPE 17 28 83 68 1

Figure S303.  Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.1

Table S705.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARHGAP5 MUTATED 1 1 15
ARHGAP5 WILD-TYPE 79 54 137

Figure S304.  Get High-res Image Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.26

Table S706.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARHGAP5 MUTATED 11 0 3
ARHGAP5 WILD-TYPE 110 37 83
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S707.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARHGAP5 MUTATED 13 0 2
ARHGAP5 WILD-TYPE 151 13 78
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 0.26

Table S708.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARHGAP5 MUTATED 1 11 0 3
ARHGAP5 WILD-TYPE 48 91 4 99
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.6

Table S709.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARHGAP5 MUTATED 0 13 4
ARHGAP5 WILD-TYPE 26 166 80
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.26

Table S710.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARHGAP5 MUTATED 1 7 8 0 1
ARHGAP5 WILD-TYPE 68 51 104 1 48
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.7

Table S711.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ARHGAP5 MUTATED 0 7 4
ARHGAP5 WILD-TYPE 18 91 91
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S712.  Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ARHGAP5 MUTATED 0 3 4 4 0
ARHGAP5 WILD-TYPE 17 31 86 65 1
'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S713.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RASA1 MUTATED 4 1 12
RASA1 WILD-TYPE 76 54 140
'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S714.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RASA1 MUTATED 9 2 0
RASA1 WILD-TYPE 112 35 86

Figure S305.  Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S715.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RASA1 MUTATED 14 0 2
RASA1 WILD-TYPE 150 13 78
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.036

Table S716.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RASA1 MUTATED 0 14 0 2
RASA1 WILD-TYPE 49 88 4 100

Figure S306.  Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.13

Table S717.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RASA1 MUTATED 0 16 1
RASA1 WILD-TYPE 26 163 83

Figure S307.  Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S718.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RASA1 MUTATED 3 7 6 0 1
RASA1 WILD-TYPE 66 51 106 1 48
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S719.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RASA1 MUTATED 1 9 1
RASA1 WILD-TYPE 17 89 94

Figure S308.  Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.42

Table S720.  Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RASA1 MUTATED 0 3 7 1 0
RASA1 WILD-TYPE 17 31 83 68 1
'ZNF48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.18

Table S721.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF48 MUTATED 0 1 9
ZNF48 WILD-TYPE 80 54 143

Figure S309.  Get High-res Image Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S722.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF48 MUTATED 7 0 1
ZNF48 WILD-TYPE 114 37 85
'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S723.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF48 MUTATED 7 0 1
ZNF48 WILD-TYPE 157 13 79
'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.26

Table S724.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF48 MUTATED 0 7 0 1
ZNF48 WILD-TYPE 49 95 4 101
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S725.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF48 MUTATED 0 9 1
ZNF48 WILD-TYPE 26 170 83
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0876 (Fisher's exact test), Q value = 0.27

Table S726.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF48 MUTATED 0 5 4 0 1
ZNF48 WILD-TYPE 69 53 108 1 48
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S727.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF48 MUTATED 0 5 1
ZNF48 WILD-TYPE 18 93 94
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S728.  Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF48 MUTATED 0 2 3 1 0
ZNF48 WILD-TYPE 17 32 87 68 1
'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S729.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ADAM30 MUTATED 2 3 9
ADAM30 WILD-TYPE 78 52 143
'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S730.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ADAM30 MUTATED 5 1 3
ADAM30 WILD-TYPE 116 36 83
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.95

Table S731.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ADAM30 MUTATED 9 0 3
ADAM30 WILD-TYPE 155 13 77
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S732.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ADAM30 MUTATED 1 7 0 4
ADAM30 WILD-TYPE 48 95 4 98
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.57

Table S733.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ADAM30 MUTATED 1 11 2
ADAM30 WILD-TYPE 25 168 82
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.22

Table S734.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ADAM30 MUTATED 3 7 4 0 0
ADAM30 WILD-TYPE 66 51 108 1 49
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S735.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ADAM30 MUTATED 1 3 3
ADAM30 WILD-TYPE 17 95 92
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S736.  Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ADAM30 MUTATED 1 2 2 2 0
ADAM30 WILD-TYPE 16 32 88 67 1
'SETDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S737.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SETDB2 MUTATED 1 1 8
SETDB2 WILD-TYPE 79 54 144
'SETDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S738.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SETDB2 MUTATED 5 0 0
SETDB2 WILD-TYPE 116 37 86
'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.4

Table S739.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SETDB2 MUTATED 7 1 1
SETDB2 WILD-TYPE 157 12 79
'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.57

Table S740.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SETDB2 MUTATED 1 6 0 2
SETDB2 WILD-TYPE 48 96 4 100
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.18

Table S741.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SETDB2 MUTATED 0 10 0
SETDB2 WILD-TYPE 26 169 84

Figure S310.  Get High-res Image Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.016

Table S742.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SETDB2 MUTATED 0 8 2 0 0
SETDB2 WILD-TYPE 69 50 110 1 49

Figure S311.  Get High-res Image Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S743.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SETDB2 MUTATED 0 4 1
SETDB2 WILD-TYPE 18 94 94
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S744.  Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SETDB2 MUTATED 0 2 3 0 0
SETDB2 WILD-TYPE 17 32 87 69 1
'INPPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.021

Table S745.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
INPPL1 MUTATED 0 3 19
INPPL1 WILD-TYPE 80 52 133

Figure S312.  Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.25

Table S746.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
INPPL1 MUTATED 10 0 2
INPPL1 WILD-TYPE 111 37 84
'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S747.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
INPPL1 MUTATED 16 0 5
INPPL1 WILD-TYPE 148 13 75
'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.13

Table S748.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
INPPL1 MUTATED 0 14 0 7
INPPL1 WILD-TYPE 49 88 4 95

Figure S313.  Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00266 (Fisher's exact test), Q value = 0.049

Table S749.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
INPPL1 MUTATED 0 21 1
INPPL1 WILD-TYPE 26 158 83

Figure S314.  Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0099

Table S750.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
INPPL1 MUTATED 1 13 7 0 1
INPPL1 WILD-TYPE 68 45 105 1 48

Figure S315.  Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.23

Table S751.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
INPPL1 MUTATED 0 9 2
INPPL1 WILD-TYPE 18 89 93
'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.18

Table S752.  Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
INPPL1 MUTATED 0 2 9 0 0
INPPL1 WILD-TYPE 17 32 81 69 1

Figure S316.  Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.012

Table S753.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CTNND1 MUTATED 0 1 18
CTNND1 WILD-TYPE 80 54 134

Figure S317.  Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.17

Table S754.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CTNND1 MUTATED 13 0 3
CTNND1 WILD-TYPE 108 37 83

Figure S318.  Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S755.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CTNND1 MUTATED 13 0 4
CTNND1 WILD-TYPE 151 13 76
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.18

Table S756.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CTNND1 MUTATED 0 12 0 5
CTNND1 WILD-TYPE 49 90 4 97

Figure S319.  Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00862 (Fisher's exact test), Q value = 0.092

Table S757.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CTNND1 MUTATED 0 18 1
CTNND1 WILD-TYPE 26 161 83

Figure S320.  Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00511 (Fisher's exact test), Q value = 0.07

Table S758.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CTNND1 MUTATED 0 8 10 0 1
CTNND1 WILD-TYPE 69 50 102 1 48

Figure S321.  Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.27

Table S759.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CTNND1 MUTATED 1 11 3
CTNND1 WILD-TYPE 17 87 92
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.039

Table S760.  Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CTNND1 MUTATED 0 0 14 1 0
CTNND1 WILD-TYPE 17 34 76 68 1

Figure S322.  Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S761.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TFE3 MUTATED 0 1 7
TFE3 WILD-TYPE 80 54 145
'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.17

Table S762.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TFE3 MUTATED 7 0 0
TFE3 WILD-TYPE 114 37 86

Figure S323.  Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S763.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TFE3 MUTATED 7 0 0
TFE3 WILD-TYPE 157 13 80
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.2

Table S764.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TFE3 MUTATED 1 6 0 0
TFE3 WILD-TYPE 48 96 4 102

Figure S324.  Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S765.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TFE3 MUTATED 1 7 0
TFE3 WILD-TYPE 25 172 84
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 0.27

Table S766.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TFE3 MUTATED 0 4 4 0 0
TFE3 WILD-TYPE 69 54 108 1 49
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.19

Table S767.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TFE3 MUTATED 1 6 0
TFE3 WILD-TYPE 17 92 95

Figure S325.  Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.21

Table S768.  Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TFE3 MUTATED 0 4 3 0 0
TFE3 WILD-TYPE 17 30 87 69 1

Figure S326.  Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SERPINI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S769.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SERPINI1 MUTATED 0 1 7
SERPINI1 WILD-TYPE 80 54 145
'SERPINI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S770.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SERPINI1 MUTATED 5 0 0
SERPINI1 WILD-TYPE 116 37 86
'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S771.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SERPINI1 MUTATED 6 0 1
SERPINI1 WILD-TYPE 158 13 79
'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S772.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SERPINI1 MUTATED 0 5 0 2
SERPINI1 WILD-TYPE 49 97 4 100
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.28

Table S773.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SERPINI1 MUTATED 0 8 0
SERPINI1 WILD-TYPE 26 171 84
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S774.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SERPINI1 MUTATED 1 4 3 0 0
SERPINI1 WILD-TYPE 68 54 109 1 49
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S775.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SERPINI1 MUTATED 0 4 0
SERPINI1 WILD-TYPE 18 94 95
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S776.  Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SERPINI1 MUTATED 0 2 2 0 0
SERPINI1 WILD-TYPE 17 32 88 69 1
'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S777.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SOX7 MUTATED 0 3 12
SOX7 WILD-TYPE 80 52 140

Figure S327.  Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.28

Table S778.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SOX7 MUTATED 9 0 2
SOX7 WILD-TYPE 112 37 84
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.63

Table S779.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SOX7 MUTATED 10 1 3
SOX7 WILD-TYPE 154 12 77
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S780.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SOX7 MUTATED 1 9 0 4
SOX7 WILD-TYPE 48 93 4 98
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S781.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SOX7 MUTATED 1 14 0
SOX7 WILD-TYPE 25 165 84

Figure S328.  Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00745 (Fisher's exact test), Q value = 0.086

Table S782.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SOX7 MUTATED 0 6 9 0 0
SOX7 WILD-TYPE 69 52 103 1 49

Figure S329.  Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S783.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SOX7 MUTATED 1 7 2
SOX7 WILD-TYPE 17 91 93
'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S784.  Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SOX7 MUTATED 0 3 6 1 0
SOX7 WILD-TYPE 17 31 84 68 1
'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S785.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LEMD1 MUTATED 0 0 3
LEMD1 WILD-TYPE 80 55 149
'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S786.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LEMD1 MUTATED 4 0 0
LEMD1 WILD-TYPE 117 37 86
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.74

Table S787.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LEMD1 MUTATED 3 0 0
LEMD1 WILD-TYPE 161 13 80
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S788.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LEMD1 MUTATED 0 3 0 0
LEMD1 WILD-TYPE 49 99 4 102
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S789.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LEMD1 MUTATED 0 4 0
LEMD1 WILD-TYPE 26 175 84
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S790.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LEMD1 MUTATED 0 4 0 0 0
LEMD1 WILD-TYPE 69 54 112 1 49

Figure S330.  Get High-res Image Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S791.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LEMD1 MUTATED 0 4 0
LEMD1 WILD-TYPE 18 94 95
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S792.  Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LEMD1 MUTATED 0 2 2 0 0
LEMD1 WILD-TYPE 17 32 88 69 1
'ARID1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.014

Table S793.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARID1B MUTATED 1 2 23
ARID1B WILD-TYPE 79 53 129

Figure S331.  Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.28

Table S794.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARID1B MUTATED 13 1 3
ARID1B WILD-TYPE 108 36 83
'ARID1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S795.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARID1B MUTATED 15 2 7
ARID1B WILD-TYPE 149 11 73
'ARID1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S796.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARID1B MUTATED 1 13 0 10
ARID1B WILD-TYPE 48 89 4 92
'ARID1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00754 (Fisher's exact test), Q value = 0.086

Table S797.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARID1B MUTATED 0 24 3
ARID1B WILD-TYPE 26 155 81

Figure S332.  Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0081

Table S798.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARID1B MUTATED 1 11 15 0 0
ARID1B WILD-TYPE 68 47 97 1 49

Figure S333.  Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.032

Table S799.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ARID1B MUTATED 0 13 1
ARID1B WILD-TYPE 18 85 94

Figure S334.  Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.17

Table S800.  Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ARID1B MUTATED 0 6 7 1 0
ARID1B WILD-TYPE 17 28 83 68 1

Figure S335.  Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S801.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PGM5 MUTATED 0 2 22
PGM5 WILD-TYPE 80 53 130

Figure S336.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S802.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PGM5 MUTATED 20 0 1
PGM5 WILD-TYPE 101 37 85

Figure S337.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.047

Table S803.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PGM5 MUTATED 22 0 1
PGM5 WILD-TYPE 142 13 79

Figure S338.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S804.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PGM5 MUTATED 0 21 0 2
PGM5 WILD-TYPE 49 81 4 100

Figure S339.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.059

Table S805.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PGM5 MUTATED 0 23 2
PGM5 WILD-TYPE 26 156 82

Figure S340.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S806.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PGM5 MUTATED 1 14 9 0 1
PGM5 WILD-TYPE 68 44 103 1 48

Figure S341.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.19

Table S807.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PGM5 MUTATED 1 14 4
PGM5 WILD-TYPE 17 84 91

Figure S342.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00239 (Fisher's exact test), Q value = 0.046

Table S808.  Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PGM5 MUTATED 0 8 10 1 0
PGM5 WILD-TYPE 17 26 80 68 1

Figure S343.  Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.094

Table S809.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FHOD3 MUTATED 2 3 21
FHOD3 WILD-TYPE 78 52 131

Figure S344.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00348 (Fisher's exact test), Q value = 0.056

Table S810.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FHOD3 MUTATED 15 1 1
FHOD3 WILD-TYPE 106 36 85

Figure S345.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S811.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FHOD3 MUTATED 17 0 6
FHOD3 WILD-TYPE 147 13 74
'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.18

Table S812.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FHOD3 MUTATED 2 16 0 5
FHOD3 WILD-TYPE 47 86 4 97

Figure S346.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.046

Table S813.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FHOD3 MUTATED 0 24 2
FHOD3 WILD-TYPE 26 155 82

Figure S347.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00067 (Fisher's exact test), Q value = 0.021

Table S814.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FHOD3 MUTATED 3 13 10 0 0
FHOD3 WILD-TYPE 66 45 102 1 49

Figure S348.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.023

Table S815.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FHOD3 MUTATED 0 14 1
FHOD3 WILD-TYPE 18 84 94

Figure S349.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S816.  Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FHOD3 MUTATED 1 4 10 0 0
FHOD3 WILD-TYPE 16 30 80 69 1

Figure S350.  Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S817.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CABP5 MUTATED 0 1 3
CABP5 WILD-TYPE 80 54 149
'CABP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S818.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CABP5 MUTATED 4 0 0
CABP5 WILD-TYPE 117 37 86
'CABP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S819.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CABP5 MUTATED 4 0 0
CABP5 WILD-TYPE 160 13 80
'CABP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S820.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CABP5 MUTATED 0 4 0 0
CABP5 WILD-TYPE 49 98 4 102
'CABP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S821.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CABP5 MUTATED 0 4 1
CABP5 WILD-TYPE 26 175 83
'CABP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S822.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CABP5 MUTATED 0 4 0 0 1
CABP5 WILD-TYPE 69 54 112 1 48

Figure S351.  Get High-res Image Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S823.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CABP5 MUTATED 0 3 1
CABP5 WILD-TYPE 18 95 94
'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S824.  Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CABP5 MUTATED 0 2 1 1 0
CABP5 WILD-TYPE 17 32 89 68 1
'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.26

Table S825.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TTF1 MUTATED 3 0 11
TTF1 WILD-TYPE 77 55 141
'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.17

Table S826.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TTF1 MUTATED 8 1 0
TTF1 WILD-TYPE 113 36 86

Figure S352.  Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S827.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TTF1 MUTATED 10 0 2
TTF1 WILD-TYPE 154 13 78
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S828.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TTF1 MUTATED 2 7 0 3
TTF1 WILD-TYPE 47 95 4 99
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.11

Table S829.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TTF1 MUTATED 3 11 0
TTF1 WILD-TYPE 23 168 84

Figure S353.  Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.23

Table S830.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TTF1 MUTATED 3 7 4 0 0
TTF1 WILD-TYPE 66 51 108 1 49
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S831.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TTF1 MUTATED 1 6 1
TTF1 WILD-TYPE 17 92 94
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.18

Table S832.  Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TTF1 MUTATED 1 4 3 0 0
TTF1 WILD-TYPE 16 30 87 69 1

Figure S354.  Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S833.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PHACTR4 MUTATED 1 1 6
PHACTR4 WILD-TYPE 79 54 146
'PHACTR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S834.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PHACTR4 MUTATED 8 0 0
PHACTR4 WILD-TYPE 113 37 86

Figure S355.  Get High-res Image Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S835.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PHACTR4 MUTATED 4 1 0
PHACTR4 WILD-TYPE 160 12 80
'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S836.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PHACTR4 MUTATED 1 4 0 0
PHACTR4 WILD-TYPE 48 98 4 102
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S837.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PHACTR4 MUTATED 0 7 1
PHACTR4 WILD-TYPE 26 172 83
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.23

Table S838.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PHACTR4 MUTATED 0 5 2 0 1
PHACTR4 WILD-TYPE 69 53 110 1 48
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S839.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PHACTR4 MUTATED 0 6 2
PHACTR4 WILD-TYPE 18 92 93
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S840.  Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PHACTR4 MUTATED 0 2 5 1 0
PHACTR4 WILD-TYPE 17 32 85 68 1
'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S841.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RBM43 MUTATED 2 1 6
RBM43 WILD-TYPE 78 54 146
'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S842.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RBM43 MUTATED 2 2 3
RBM43 WILD-TYPE 119 35 83
'RBM43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.18

Table S843.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RBM43 MUTATED 2 1 5
RBM43 WILD-TYPE 162 12 75

Figure S356.  Get High-res Image Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S844.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RBM43 MUTATED 2 1 0 5
RBM43 WILD-TYPE 47 101 4 97
'RBM43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.38

Table S845.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RBM43 MUTATED 2 6 1
RBM43 WILD-TYPE 24 173 83
'RBM43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S846.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RBM43 MUTATED 2 2 5 0 0
RBM43 WILD-TYPE 67 56 107 1 49
'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S847.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RBM43 MUTATED 0 5 1
RBM43 WILD-TYPE 18 93 94
'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S848.  Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RBM43 MUTATED 1 1 4 0 0
RBM43 WILD-TYPE 16 33 86 69 1
'CDC25C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.26

Table S849.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDC25C MUTATED 1 1 11
CDC25C WILD-TYPE 79 54 141
'CDC25C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.26

Table S850.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDC25C MUTATED 9 1 1
CDC25C WILD-TYPE 112 36 85
'CDC25C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S851.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDC25C MUTATED 9 0 1
CDC25C WILD-TYPE 155 13 79
'CDC25C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S852.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDC25C MUTATED 0 9 0 1
CDC25C WILD-TYPE 49 93 4 101

Figure S357.  Get High-res Image Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S853.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDC25C MUTATED 0 11 2
CDC25C WILD-TYPE 26 168 82
'CDC25C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.65

Table S854.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDC25C MUTATED 1 4 6 0 2
CDC25C WILD-TYPE 68 54 106 1 47
'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.28

Table S855.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDC25C MUTATED 1 7 1
CDC25C WILD-TYPE 17 91 94
'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S856.  Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDC25C MUTATED 0 1 6 2 0
CDC25C WILD-TYPE 17 33 84 67 1
'GPR161 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.18

Table S857.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPR161 MUTATED 0 2 10
GPR161 WILD-TYPE 80 53 142

Figure S358.  Get High-res Image Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR161 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.75

Table S858.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPR161 MUTATED 5 0 3
GPR161 WILD-TYPE 116 37 83
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S859.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPR161 MUTATED 7 1 2
GPR161 WILD-TYPE 157 12 78
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S860.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPR161 MUTATED 0 7 0 3
GPR161 WILD-TYPE 49 95 4 99
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S861.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPR161 MUTATED 0 10 2
GPR161 WILD-TYPE 26 169 82
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S862.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPR161 MUTATED 0 4 7 0 1
GPR161 WILD-TYPE 69 54 105 1 48
'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S863.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPR161 MUTATED 0 6 2
GPR161 WILD-TYPE 18 92 93
'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.56

Table S864.  Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPR161 MUTATED 0 1 6 1 0
GPR161 WILD-TYPE 17 33 84 68 1
'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.015

Table S865.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SVIL MUTATED 2 1 23
SVIL WILD-TYPE 78 54 129

Figure S359.  Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.21

Table S866.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SVIL MUTATED 16 1 4
SVIL WILD-TYPE 105 36 82

Figure S360.  Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.91

Table S867.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SVIL MUTATED 18 1 6
SVIL WILD-TYPE 146 12 74
'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.041

Table S868.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SVIL MUTATED 0 18 0 7
SVIL WILD-TYPE 49 84 4 95

Figure S361.  Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S869.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SVIL MUTATED 0 23 3
SVIL WILD-TYPE 26 156 81

Figure S362.  Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00834 (Fisher's exact test), Q value = 0.09

Table S870.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SVIL MUTATED 2 12 10 0 2
SVIL WILD-TYPE 67 46 102 1 47

Figure S363.  Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S871.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SVIL MUTATED 1 15 4
SVIL WILD-TYPE 17 83 91

Figure S364.  Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.23

Table S872.  Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SVIL MUTATED 0 7 10 3 0
SVIL WILD-TYPE 17 27 80 66 1
'PMEPA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S873.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PMEPA1 MUTATED 0 0 6
PMEPA1 WILD-TYPE 80 55 146
'PMEPA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S874.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PMEPA1 MUTATED 1 0 3
PMEPA1 WILD-TYPE 120 37 83
'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.7

Table S875.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PMEPA1 MUTATED 3 0 3
PMEPA1 WILD-TYPE 161 13 77
'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S876.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PMEPA1 MUTATED 0 3 0 3
PMEPA1 WILD-TYPE 49 99 4 99
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S877.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PMEPA1 MUTATED 0 6 0
PMEPA1 WILD-TYPE 26 173 84
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S878.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PMEPA1 MUTATED 0 1 5 0 0
PMEPA1 WILD-TYPE 69 57 107 1 49
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S879.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PMEPA1 MUTATED 0 4 0
PMEPA1 WILD-TYPE 18 94 95
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S880.  Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PMEPA1 MUTATED 0 1 3 0 0
PMEPA1 WILD-TYPE 17 33 87 69 1
'FILIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S881.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FILIP1L MUTATED 2 2 13
FILIP1L WILD-TYPE 78 53 139
'FILIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.19

Table S882.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FILIP1L MUTATED 10 3 1
FILIP1L WILD-TYPE 111 34 85

Figure S365.  Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.27

Table S883.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FILIP1L MUTATED 12 1 1
FILIP1L WILD-TYPE 152 12 79
'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S884.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FILIP1L MUTATED 2 11 0 1
FILIP1L WILD-TYPE 47 91 4 101

Figure S366.  Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.21

Table S885.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FILIP1L MUTATED 1 15 1
FILIP1L WILD-TYPE 25 164 83

Figure S367.  Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S886.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FILIP1L MUTATED 2 7 7 0 1
FILIP1L WILD-TYPE 67 51 105 1 48
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.17

Table S887.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FILIP1L MUTATED 2 10 2
FILIP1L WILD-TYPE 16 88 93

Figure S368.  Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.28

Table S888.  Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FILIP1L MUTATED 1 5 7 1 0
FILIP1L WILD-TYPE 16 29 83 68 1
'CTSC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S889.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CTSC MUTATED 0 0 10
CTSC WILD-TYPE 80 55 142

Figure S369.  Get High-res Image Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTSC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.23

Table S890.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CTSC MUTATED 6 0 0
CTSC WILD-TYPE 115 37 86
'CTSC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S891.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CTSC MUTATED 6 0 3
CTSC WILD-TYPE 158 13 77
'CTSC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S892.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CTSC MUTATED 0 6 0 3
CTSC WILD-TYPE 49 96 4 99
'CTSC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S893.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CTSC MUTATED 0 8 2
CTSC WILD-TYPE 26 171 82
'CTSC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.35

Table S894.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CTSC MUTATED 0 4 5 0 1
CTSC WILD-TYPE 69 54 107 1 48
'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S895.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CTSC MUTATED 0 4 2
CTSC WILD-TYPE 18 94 93
'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S896.  Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CTSC MUTATED 0 2 3 1 0
CTSC WILD-TYPE 17 32 87 68 1
'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0071 (Fisher's exact test), Q value = 0.084

Table S897.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PAMR1 MUTATED 0 3 14
PAMR1 WILD-TYPE 80 52 138

Figure S370.  Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S898.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PAMR1 MUTATED 7 0 3
PAMR1 WILD-TYPE 114 37 83
'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.99

Table S899.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PAMR1 MUTATED 12 0 5
PAMR1 WILD-TYPE 152 13 75
'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S900.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PAMR1 MUTATED 1 10 0 6
PAMR1 WILD-TYPE 48 92 4 96
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S901.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PAMR1 MUTATED 0 16 1
PAMR1 WILD-TYPE 26 163 83

Figure S371.  Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.27

Table S902.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PAMR1 MUTATED 2 8 6 0 1
PAMR1 WILD-TYPE 67 50 106 1 48
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.21

Table S903.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PAMR1 MUTATED 0 8 1
PAMR1 WILD-TYPE 18 90 94
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S904.  Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PAMR1 MUTATED 0 2 6 1 0
PAMR1 WILD-TYPE 17 32 84 68 1
'USP21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S905.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
USP21 MUTATED 1 1 10
USP21 WILD-TYPE 79 54 142
'USP21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.23

Table S906.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
USP21 MUTATED 7 1 0
USP21 WILD-TYPE 114 36 86
'USP21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S907.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
USP21 MUTATED 10 0 1
USP21 WILD-TYPE 154 13 79
'USP21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S908.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
USP21 MUTATED 1 8 0 2
USP21 WILD-TYPE 48 94 4 100
'USP21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.27

Table S909.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
USP21 MUTATED 0 12 1
USP21 WILD-TYPE 26 167 83
'USP21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.027

Table S910.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
USP21 MUTATED 2 9 2 0 0
USP21 WILD-TYPE 67 49 110 1 49

Figure S372.  Get High-res Image Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.27

Table S911.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
USP21 MUTATED 0 7 1
USP21 WILD-TYPE 18 91 94
'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S912.  Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
USP21 MUTATED 0 5 3 0 0
USP21 WILD-TYPE 17 29 87 69 1

Figure S373.  Get High-res Image Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S913.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PAX2 MUTATED 0 1 7
PAX2 WILD-TYPE 80 54 145
'PAX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S914.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PAX2 MUTATED 6 0 1
PAX2 WILD-TYPE 115 37 85
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S915.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PAX2 MUTATED 6 0 1
PAX2 WILD-TYPE 158 13 79
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S916.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PAX2 MUTATED 0 5 0 2
PAX2 WILD-TYPE 49 97 4 100
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S917.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PAX2 MUTATED 0 7 1
PAX2 WILD-TYPE 26 172 83
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S918.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PAX2 MUTATED 0 4 3 0 1
PAX2 WILD-TYPE 69 54 109 1 48
'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S919.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PAX2 MUTATED 0 4 2
PAX2 WILD-TYPE 18 94 93
'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S920.  Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PAX2 MUTATED 0 0 5 1 0
PAX2 WILD-TYPE 17 34 85 68 1
'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.017

Table S921.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZFHX3 MUTATED 3 4 31
ZFHX3 WILD-TYPE 77 51 121

Figure S374.  Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.017

Table S922.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZFHX3 MUTATED 25 3 3
ZFHX3 WILD-TYPE 96 34 83

Figure S375.  Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 0.27

Table S923.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZFHX3 MUTATED 26 1 5
ZFHX3 WILD-TYPE 138 12 75
'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.025

Table S924.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZFHX3 MUTATED 1 23 0 8
ZFHX3 WILD-TYPE 48 79 4 94

Figure S376.  Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.033

Table S925.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZFHX3 MUTATED 0 33 5
ZFHX3 WILD-TYPE 26 146 79

Figure S377.  Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S926.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZFHX3 MUTATED 3 19 14 0 2
ZFHX3 WILD-TYPE 66 39 98 1 47

Figure S378.  Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.21

Table S927.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZFHX3 MUTATED 2 20 8
ZFHX3 WILD-TYPE 16 78 87
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.17

Table S928.  Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZFHX3 MUTATED 0 8 17 5 0
ZFHX3 WILD-TYPE 17 26 73 64 1

Figure S379.  Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.051

Table S929.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EPHA2 MUTATED 1 2 19
EPHA2 WILD-TYPE 79 53 133

Figure S380.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S930.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EPHA2 MUTATED 16 2 2
EPHA2 WILD-TYPE 105 35 84

Figure S381.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.14

Table S931.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EPHA2 MUTATED 20 0 2
EPHA2 WILD-TYPE 144 13 78

Figure S382.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.006

Table S932.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EPHA2 MUTATED 0 19 0 3
EPHA2 WILD-TYPE 49 83 4 99

Figure S383.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00564 (Fisher's exact test), Q value = 0.073

Table S933.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EPHA2 MUTATED 1 21 1
EPHA2 WILD-TYPE 25 158 83

Figure S384.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.024

Table S934.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EPHA2 MUTATED 1 12 9 0 1
EPHA2 WILD-TYPE 68 46 103 1 48

Figure S385.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00603 (Fisher's exact test), Q value = 0.077

Table S935.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EPHA2 MUTATED 0 15 3
EPHA2 WILD-TYPE 18 83 92

Figure S386.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S936.  Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EPHA2 MUTATED 0 7 9 2 0
EPHA2 WILD-TYPE 17 27 81 67 1

Figure S387.  Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.12

Table S937.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PREPL MUTATED 1 4 17
PREPL WILD-TYPE 79 51 135

Figure S388.  Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PREPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S938.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PREPL MUTATED 15 1 2
PREPL WILD-TYPE 106 36 84

Figure S389.  Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PREPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S939.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PREPL MUTATED 18 0 3
PREPL WILD-TYPE 146 13 77
'PREPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00284 (Fisher's exact test), Q value = 0.051

Table S940.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PREPL MUTATED 0 16 0 5
PREPL WILD-TYPE 49 86 4 97

Figure S390.  Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S941.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PREPL MUTATED 1 18 3
PREPL WILD-TYPE 25 161 81
'PREPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0051 (Fisher's exact test), Q value = 0.07

Table S942.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PREPL MUTATED 1 11 8 0 2
PREPL WILD-TYPE 68 47 104 1 47

Figure S391.  Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.049

Table S943.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PREPL MUTATED 0 14 2
PREPL WILD-TYPE 18 84 93

Figure S392.  Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PREPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.17

Table S944.  Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PREPL MUTATED 0 7 7 2 0
PREPL WILD-TYPE 17 27 83 67 1

Figure S393.  Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S945.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RGL2 MUTATED 1 0 11
RGL2 WILD-TYPE 79 55 141

Figure S394.  Get High-res Image Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S946.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RGL2 MUTATED 8 1 1
RGL2 WILD-TYPE 113 36 85
'RGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S947.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RGL2 MUTATED 8 1 1
RGL2 WILD-TYPE 156 12 79
'RGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.25

Table S948.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RGL2 MUTATED 1 8 0 1
RGL2 WILD-TYPE 48 94 4 101
'RGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S949.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RGL2 MUTATED 1 10 1
RGL2 WILD-TYPE 25 169 83
'RGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S950.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RGL2 MUTATED 1 5 5 0 1
RGL2 WILD-TYPE 68 53 107 1 48
'RGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.23

Table S951.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RGL2 MUTATED 2 6 1
RGL2 WILD-TYPE 16 92 94
'RGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S952.  Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RGL2 MUTATED 1 3 4 1 0
RGL2 WILD-TYPE 16 31 86 68 1
'ATP6V1C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S953.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATP6V1C2 MUTATED 0 1 11
ATP6V1C2 WILD-TYPE 80 54 141

Figure S395.  Get High-res Image Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S954.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATP6V1C2 MUTATED 8 0 3
ATP6V1C2 WILD-TYPE 113 37 83
'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.25

Table S955.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATP6V1C2 MUTATED 7 2 1
ATP6V1C2 WILD-TYPE 157 11 79
'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.73

Table S956.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATP6V1C2 MUTATED 1 6 0 3
ATP6V1C2 WILD-TYPE 48 96 4 99
'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S957.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATP6V1C2 MUTATED 1 10 1
ATP6V1C2 WILD-TYPE 25 169 83
'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.2

Table S958.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATP6V1C2 MUTATED 0 6 5 0 1
ATP6V1C2 WILD-TYPE 69 52 107 1 48

Figure S396.  Get High-res Image Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S959.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATP6V1C2 MUTATED 1 7 2
ATP6V1C2 WILD-TYPE 17 91 93
'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.79

Table S960.  Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATP6V1C2 MUTATED 0 2 6 2 0
ATP6V1C2 WILD-TYPE 17 32 84 67 1
'CDC14A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.17

Table S961.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDC14A MUTATED 1 1 13
CDC14A WILD-TYPE 79 54 139

Figure S397.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC14A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S962.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDC14A MUTATED 10 0 1
CDC14A WILD-TYPE 111 37 85

Figure S398.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S963.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDC14A MUTATED 12 0 2
CDC14A WILD-TYPE 152 13 78
'CDC14A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.15

Table S964.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDC14A MUTATED 0 11 0 3
CDC14A WILD-TYPE 49 91 4 99

Figure S399.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.057

Table S965.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDC14A MUTATED 0 15 0
CDC14A WILD-TYPE 26 164 84

Figure S400.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00074 (Fisher's exact test), Q value = 0.022

Table S966.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDC14A MUTATED 0 9 6 0 0
CDC14A WILD-TYPE 69 49 106 1 49

Figure S401.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.14

Table S967.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDC14A MUTATED 0 9 1
CDC14A WILD-TYPE 18 89 94

Figure S402.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.19

Table S968.  Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDC14A MUTATED 0 4 6 0 0
CDC14A WILD-TYPE 17 30 84 69 1

Figure S403.  Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.095

Table S969.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DDX17 MUTATED 0 1 12
DDX17 WILD-TYPE 80 54 140

Figure S404.  Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.18

Table S970.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DDX17 MUTATED 9 0 1
DDX17 WILD-TYPE 112 37 85

Figure S405.  Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S971.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DDX17 MUTATED 10 0 1
DDX17 WILD-TYPE 154 13 79
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00816 (Fisher's exact test), Q value = 0.089

Table S972.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DDX17 MUTATED 0 10 0 1
DDX17 WILD-TYPE 49 92 4 101

Figure S406.  Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.27

Table S973.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DDX17 MUTATED 0 12 1
DDX17 WILD-TYPE 26 167 83
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00702 (Fisher's exact test), Q value = 0.084

Table S974.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DDX17 MUTATED 1 8 4 0 0
DDX17 WILD-TYPE 68 50 108 1 49

Figure S407.  Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.27

Table S975.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DDX17 MUTATED 1 7 1
DDX17 WILD-TYPE 17 91 94
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S976.  Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DDX17 MUTATED 0 3 5 1 0
DDX17 WILD-TYPE 17 31 85 68 1
'C19ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.48

Table S977.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C19ORF40 MUTATED 0 1 5
C19ORF40 WILD-TYPE 80 54 147
'C19ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S978.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C19ORF40 MUTATED 1 1 1
C19ORF40 WILD-TYPE 120 36 85
'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.85

Table S979.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C19ORF40 MUTATED 3 0 2
C19ORF40 WILD-TYPE 161 13 78
'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 0.94

Table S980.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C19ORF40 MUTATED 0 3 0 2
C19ORF40 WILD-TYPE 49 99 4 100
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.51

Table S981.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C19ORF40 MUTATED 0 6 0
C19ORF40 WILD-TYPE 26 173 84
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S982.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C19ORF40 MUTATED 0 3 3 0 0
C19ORF40 WILD-TYPE 69 55 109 1 49
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S983.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C19ORF40 MUTATED 0 3 0
C19ORF40 WILD-TYPE 18 95 95
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.69

Table S984.  Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C19ORF40 MUTATED 0 1 2 0 0
C19ORF40 WILD-TYPE 17 33 88 69 1
'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.11

Table S985.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ABCC4 MUTATED 1 1 15
ABCC4 WILD-TYPE 79 54 137

Figure S408.  Get High-res Image Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S986.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ABCC4 MUTATED 8 0 4
ABCC4 WILD-TYPE 113 37 82
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.38

Table S987.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ABCC4 MUTATED 13 1 2
ABCC4 WILD-TYPE 151 12 78
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.2

Table S988.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ABCC4 MUTATED 1 12 0 3
ABCC4 WILD-TYPE 48 90 4 99

Figure S409.  Get High-res Image Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.39

Table S989.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ABCC4 MUTATED 1 14 2
ABCC4 WILD-TYPE 25 165 82
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 0.27

Table S990.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ABCC4 MUTATED 2 6 9 0 0
ABCC4 WILD-TYPE 67 52 103 1 49
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S991.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ABCC4 MUTATED 1 8 2
ABCC4 WILD-TYPE 17 90 93
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S992.  Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ABCC4 MUTATED 0 2 7 2 0
ABCC4 WILD-TYPE 17 32 83 67 1
'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.35

Table S993.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZFC3H1 MUTATED 1 3 11
ZFC3H1 WILD-TYPE 79 52 141
'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.53

Table S994.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZFC3H1 MUTATED 8 1 2
ZFC3H1 WILD-TYPE 113 36 84
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.91

Table S995.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZFC3H1 MUTATED 10 1 4
ZFC3H1 WILD-TYPE 154 12 76
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S996.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZFC3H1 MUTATED 3 9 0 3
ZFC3H1 WILD-TYPE 46 93 4 99
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.92

Table S997.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZFC3H1 MUTATED 1 11 3
ZFC3H1 WILD-TYPE 25 168 81
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S998.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZFC3H1 MUTATED 2 6 5 1 1
ZFC3H1 WILD-TYPE 67 52 107 0 48

Figure S410.  Get High-res Image Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S999.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZFC3H1 MUTATED 2 7 2
ZFC3H1 WILD-TYPE 16 91 93
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.23

Table S1000.  Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZFC3H1 MUTATED 0 3 5 2 1
ZFC3H1 WILD-TYPE 17 31 85 67 0
'ZKSCAN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.12

Table S1001.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZKSCAN5 MUTATED 0 0 9
ZKSCAN5 WILD-TYPE 80 55 143

Figure S411.  Get High-res Image Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 0.96

Table S1002.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZKSCAN5 MUTATED 5 1 2
ZKSCAN5 WILD-TYPE 116 36 84
'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S1003.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZKSCAN5 MUTATED 8 0 1
ZKSCAN5 WILD-TYPE 156 13 79
'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S1004.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZKSCAN5 MUTATED 0 7 0 2
ZKSCAN5 WILD-TYPE 49 95 4 100
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S1005.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZKSCAN5 MUTATED 0 8 1
ZKSCAN5 WILD-TYPE 26 171 83
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S1006.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZKSCAN5 MUTATED 1 4 4 0 0
ZKSCAN5 WILD-TYPE 68 54 108 1 49
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S1007.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZKSCAN5 MUTATED 0 6 2
ZKSCAN5 WILD-TYPE 18 92 93
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S1008.  Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZKSCAN5 MUTATED 0 2 5 1 0
ZKSCAN5 WILD-TYPE 17 32 85 68 1
'RABGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.013

Table S1009.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RABGAP1 MUTATED 0 1 18
RABGAP1 WILD-TYPE 80 54 134

Figure S412.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RABGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0054

Table S1010.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RABGAP1 MUTATED 17 0 0
RABGAP1 WILD-TYPE 104 37 86

Figure S413.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.094

Table S1011.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RABGAP1 MUTATED 15 0 0
RABGAP1 WILD-TYPE 149 13 80

Figure S414.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S1012.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RABGAP1 MUTATED 0 15 0 0
RABGAP1 WILD-TYPE 49 87 4 102

Figure S415.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S1013.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RABGAP1 MUTATED 0 18 2
RABGAP1 WILD-TYPE 26 161 82

Figure S416.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S1014.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RABGAP1 MUTATED 0 14 5 0 1
RABGAP1 WILD-TYPE 69 44 107 1 48

Figure S417.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.22

Table S1015.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RABGAP1 MUTATED 1 12 3
RABGAP1 WILD-TYPE 17 86 92
'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.17

Table S1016.  Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RABGAP1 MUTATED 0 7 7 2 0
RABGAP1 WILD-TYPE 17 27 83 67 1

Figure S418.  Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF145 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S1017.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RNF145 MUTATED 1 2 15
RNF145 WILD-TYPE 79 53 137

Figure S419.  Get High-res Image Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF145 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.29

Table S1018.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RNF145 MUTATED 11 1 2
RNF145 WILD-TYPE 110 36 84
'RNF145 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1019.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RNF145 MUTATED 11 0 5
RNF145 WILD-TYPE 153 13 75
'RNF145 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.51

Table S1020.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RNF145 MUTATED 1 10 0 5
RNF145 WILD-TYPE 48 92 4 97
'RNF145 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S1021.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RNF145 MUTATED 1 14 3
RNF145 WILD-TYPE 25 165 81
'RNF145 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.25

Table S1022.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RNF145 MUTATED 1 7 9 0 1
RNF145 WILD-TYPE 68 51 103 1 48
'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1023.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RNF145 MUTATED 0 9 3
RNF145 WILD-TYPE 18 89 92
'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.6

Table S1024.  Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RNF145 MUTATED 1 1 8 2 0
RNF145 WILD-TYPE 16 33 82 67 1
'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S1025.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SNAPC1 MUTATED 0 1 6
SNAPC1 WILD-TYPE 80 54 146
'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.17

Table S1026.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SNAPC1 MUTATED 7 0 0
SNAPC1 WILD-TYPE 114 37 86

Figure S420.  Get High-res Image Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.73

Table S1027.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SNAPC1 MUTATED 6 0 1
SNAPC1 WILD-TYPE 158 13 79
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S1028.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SNAPC1 MUTATED 0 5 0 2
SNAPC1 WILD-TYPE 49 97 4 100
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S1029.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SNAPC1 MUTATED 0 7 0
SNAPC1 WILD-TYPE 26 172 84
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S1030.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SNAPC1 MUTATED 1 4 2 0 0
SNAPC1 WILD-TYPE 68 54 110 1 49
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.52

Table S1031.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SNAPC1 MUTATED 0 5 1
SNAPC1 WILD-TYPE 18 93 94
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S1032.  Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SNAPC1 MUTATED 0 2 4 0 0
SNAPC1 WILD-TYPE 17 32 86 69 1
'CCDC153 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S1033.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CCDC153 MUTATED 0 1 7
CCDC153 WILD-TYPE 80 54 145
'CCDC153 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S1034.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CCDC153 MUTATED 6 0 1
CCDC153 WILD-TYPE 115 37 85
'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1035.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CCDC153 MUTATED 5 0 2
CCDC153 WILD-TYPE 159 13 78
'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S1036.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CCDC153 MUTATED 0 5 0 2
CCDC153 WILD-TYPE 49 97 4 100
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S1037.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CCDC153 MUTATED 0 7 1
CCDC153 WILD-TYPE 26 172 83
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 0.22

Table S1038.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CCDC153 MUTATED 0 5 2 0 1
CCDC153 WILD-TYPE 69 53 110 1 48
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1039.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CCDC153 MUTATED 0 6 1
CCDC153 WILD-TYPE 18 92 94
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S1040.  Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CCDC153 MUTATED 0 2 4 1 0
CCDC153 WILD-TYPE 17 32 86 68 1
'OPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.25

Table S1041.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OPTN MUTATED 0 1 8
OPTN WILD-TYPE 80 54 144
'OPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.94

Table S1042.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OPTN MUTATED 4 0 2
OPTN WILD-TYPE 117 37 84
'OPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S1043.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OPTN MUTATED 7 1 1
OPTN WILD-TYPE 157 12 79
'OPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S1044.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OPTN MUTATED 0 7 0 2
OPTN WILD-TYPE 49 95 4 100
'OPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S1045.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OPTN MUTATED 0 8 1
OPTN WILD-TYPE 26 171 83
'OPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S1046.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OPTN MUTATED 1 4 4 0 0
OPTN WILD-TYPE 68 54 108 1 49
'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S1047.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OPTN MUTATED 0 4 1
OPTN WILD-TYPE 18 94 94
'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.98

Table S1048.  Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OPTN MUTATED 0 1 3 1 0
OPTN WILD-TYPE 17 33 87 68 1
'PLEKHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0035 (Fisher's exact test), Q value = 0.057

Table S1049.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLEKHA5 MUTATED 0 1 14
PLEKHA5 WILD-TYPE 80 54 138

Figure S421.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S1050.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLEKHA5 MUTATED 10 0 1
PLEKHA5 WILD-TYPE 111 37 85

Figure S422.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S1051.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLEKHA5 MUTATED 11 0 2
PLEKHA5 WILD-TYPE 153 13 78
'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.2

Table S1052.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLEKHA5 MUTATED 0 10 0 3
PLEKHA5 WILD-TYPE 49 92 4 99

Figure S423.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.058

Table S1053.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLEKHA5 MUTATED 0 15 0
PLEKHA5 WILD-TYPE 26 164 84

Figure S424.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.019

Table S1054.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLEKHA5 MUTATED 0 9 6 0 0
PLEKHA5 WILD-TYPE 69 49 106 1 49

Figure S425.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.057

Table S1055.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLEKHA5 MUTATED 0 9 0
PLEKHA5 WILD-TYPE 18 89 95

Figure S426.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.21

Table S1056.  Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLEKHA5 MUTATED 0 4 5 0 0
PLEKHA5 WILD-TYPE 17 30 85 69 1

Figure S427.  Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SREBF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.86

Table S1057.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SREBF2 MUTATED 2 1 7
SREBF2 WILD-TYPE 78 54 145
'SREBF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.75

Table S1058.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SREBF2 MUTATED 5 0 3
SREBF2 WILD-TYPE 116 37 83
'SREBF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1059.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SREBF2 MUTATED 4 0 2
SREBF2 WILD-TYPE 160 13 78
'SREBF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S1060.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SREBF2 MUTATED 0 4 0 2
SREBF2 WILD-TYPE 49 98 4 100
'SREBF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S1061.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SREBF2 MUTATED 1 8 1
SREBF2 WILD-TYPE 25 171 83
'SREBF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S1062.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SREBF2 MUTATED 1 4 4 0 1
SREBF2 WILD-TYPE 68 54 108 1 48
'SREBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S1063.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SREBF2 MUTATED 0 5 2
SREBF2 WILD-TYPE 18 93 93
'SREBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S1064.  Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SREBF2 MUTATED 0 1 5 1 0
SREBF2 WILD-TYPE 17 33 85 68 1
'FASTKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.16

Table S1065.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FASTKD1 MUTATED 0 1 10
FASTKD1 WILD-TYPE 80 54 142

Figure S428.  Get High-res Image Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FASTKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1066.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FASTKD1 MUTATED 8 2 1
FASTKD1 WILD-TYPE 113 35 85
'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.91

Table S1067.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FASTKD1 MUTATED 7 0 2
FASTKD1 WILD-TYPE 157 13 78
'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S1068.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FASTKD1 MUTATED 0 6 0 3
FASTKD1 WILD-TYPE 49 96 4 99
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S1069.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FASTKD1 MUTATED 0 10 1
FASTKD1 WILD-TYPE 26 169 83
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S1070.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FASTKD1 MUTATED 2 4 5 0 0
FASTKD1 WILD-TYPE 67 54 107 1 49
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.27

Table S1071.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FASTKD1 MUTATED 0 7 1
FASTKD1 WILD-TYPE 18 91 94
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S1072.  Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FASTKD1 MUTATED 0 4 3 1 0
FASTKD1 WILD-TYPE 17 30 87 68 1
'MAP7D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.26

Table S1073.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAP7D1 MUTATED 2 0 10
MAP7D1 WILD-TYPE 78 55 142
'MAP7D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.68

Table S1074.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAP7D1 MUTATED 7 2 2
MAP7D1 WILD-TYPE 114 35 84
'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1075.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAP7D1 MUTATED 8 0 3
MAP7D1 WILD-TYPE 156 13 77
'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.8

Table S1076.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAP7D1 MUTATED 2 6 0 3
MAP7D1 WILD-TYPE 47 96 4 99
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S1077.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAP7D1 MUTATED 1 9 2
MAP7D1 WILD-TYPE 25 170 82
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S1078.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAP7D1 MUTATED 2 4 5 0 1
MAP7D1 WILD-TYPE 67 54 107 1 48
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.23

Table S1079.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAP7D1 MUTATED 1 8 1
MAP7D1 WILD-TYPE 17 90 94
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.5

Table S1080.  Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAP7D1 MUTATED 1 1 7 1 0
MAP7D1 WILD-TYPE 16 33 83 68 1
'SLC27A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S1081.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC27A3 MUTATED 0 1 7
SLC27A3 WILD-TYPE 80 54 145
'SLC27A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S1082.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC27A3 MUTATED 5 0 1
SLC27A3 WILD-TYPE 116 37 85
'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S1083.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC27A3 MUTATED 7 0 1
SLC27A3 WILD-TYPE 157 13 79
'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.26

Table S1084.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC27A3 MUTATED 0 7 0 1
SLC27A3 WILD-TYPE 49 95 4 101
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S1085.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC27A3 MUTATED 0 8 1
SLC27A3 WILD-TYPE 26 171 83
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S1086.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC27A3 MUTATED 0 6 3 0 0
SLC27A3 WILD-TYPE 69 52 109 1 49

Figure S429.  Get High-res Image Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.91

Table S1087.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC27A3 MUTATED 0 4 2
SLC27A3 WILD-TYPE 18 94 93
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S1088.  Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC27A3 MUTATED 0 3 2 1 0
SLC27A3 WILD-TYPE 17 31 88 68 1
'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.2

Table S1089.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
INF2 MUTATED 1 0 10
INF2 WILD-TYPE 79 55 142

Figure S430.  Get High-res Image Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S1090.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
INF2 MUTATED 7 1 1
INF2 WILD-TYPE 114 36 85
'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.18

Table S1091.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
INF2 MUTATED 10 1 0
INF2 WILD-TYPE 154 12 80

Figure S431.  Get High-res Image Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.19

Table S1092.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
INF2 MUTATED 0 9 0 2
INF2 WILD-TYPE 49 93 4 100

Figure S432.  Get High-res Image Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S1093.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
INF2 MUTATED 0 10 1
INF2 WILD-TYPE 26 169 83
'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S1094.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
INF2 MUTATED 1 4 6 0 0
INF2 WILD-TYPE 68 54 106 1 49
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S1095.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
INF2 MUTATED 0 6 2
INF2 WILD-TYPE 18 92 93
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.51

Table S1096.  Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
INF2 MUTATED 0 3 4 1 0
INF2 WILD-TYPE 17 31 86 68 1
'C13ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.32

Table S1097.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C13ORF33 MUTATED 0 1 6
C13ORF33 WILD-TYPE 80 54 146
'C13ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S1098.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C13ORF33 MUTATED 7 0 0
C13ORF33 WILD-TYPE 114 37 86

Figure S433.  Get High-res Image Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.55

Table S1099.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C13ORF33 MUTATED 5 0 0
C13ORF33 WILD-TYPE 159 13 80
'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.24

Table S1100.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C13ORF33 MUTATED 0 5 0 0
C13ORF33 WILD-TYPE 49 97 4 102
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S1101.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C13ORF33 MUTATED 0 6 1
C13ORF33 WILD-TYPE 26 173 83
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S1102.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C13ORF33 MUTATED 0 2 4 0 1
C13ORF33 WILD-TYPE 69 56 108 1 48
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S1103.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C13ORF33 MUTATED 0 5 1
C13ORF33 WILD-TYPE 18 93 94
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.68

Table S1104.  Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C13ORF33 MUTATED 0 2 3 1 0
C13ORF33 WILD-TYPE 17 32 87 68 1
'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S1105.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AKAP13 MUTATED 4 4 20
AKAP13 WILD-TYPE 76 51 132
'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.27

Table S1106.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AKAP13 MUTATED 14 2 3
AKAP13 WILD-TYPE 107 35 83
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.25

Table S1107.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AKAP13 MUTATED 21 1 3
AKAP13 WILD-TYPE 143 12 77
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00778 (Fisher's exact test), Q value = 0.087

Table S1108.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AKAP13 MUTATED 3 17 1 4
AKAP13 WILD-TYPE 46 85 3 98

Figure S434.  Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00506 (Fisher's exact test), Q value = 0.069

Table S1109.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AKAP13 MUTATED 1 25 2
AKAP13 WILD-TYPE 25 154 82

Figure S435.  Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00786 (Fisher's exact test), Q value = 0.087

Table S1110.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AKAP13 MUTATED 5 13 9 0 1
AKAP13 WILD-TYPE 64 45 103 1 48

Figure S436.  Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S1111.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AKAP13 MUTATED 1 13 2
AKAP13 WILD-TYPE 17 85 93

Figure S437.  Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.17

Table S1112.  Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AKAP13 MUTATED 0 3 12 1 0
AKAP13 WILD-TYPE 17 31 78 68 1

Figure S438.  Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.24

Table S1113.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DYRK4 MUTATED 0 1 8
DYRK4 WILD-TYPE 80 54 144
'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.17

Table S1114.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DYRK4 MUTATED 7 0 0
DYRK4 WILD-TYPE 114 37 86

Figure S439.  Get High-res Image Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.91

Table S1115.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DYRK4 MUTATED 7 0 2
DYRK4 WILD-TYPE 157 13 78
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1116.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DYRK4 MUTATED 0 7 0 2
DYRK4 WILD-TYPE 49 95 4 100
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S1117.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DYRK4 MUTATED 0 8 1
DYRK4 WILD-TYPE 26 171 83
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S1118.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DYRK4 MUTATED 1 3 5 0 0
DYRK4 WILD-TYPE 68 55 107 1 49
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.23

Table S1119.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DYRK4 MUTATED 1 5 0
DYRK4 WILD-TYPE 17 93 95
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S1120.  Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DYRK4 MUTATED 0 2 4 0 0
DYRK4 WILD-TYPE 17 32 86 69 1
'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.17

Table S1121.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FOXN3 MUTATED 0 0 8
FOXN3 WILD-TYPE 80 55 144

Figure S440.  Get High-res Image Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.17

Table S1122.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FOXN3 MUTATED 7 0 0
FOXN3 WILD-TYPE 114 37 86

Figure S441.  Get High-res Image Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1123.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FOXN3 MUTATED 5 0 2
FOXN3 WILD-TYPE 159 13 78
'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S1124.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FOXN3 MUTATED 0 5 0 2
FOXN3 WILD-TYPE 49 97 4 100
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.28

Table S1125.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FOXN3 MUTATED 0 8 0
FOXN3 WILD-TYPE 26 171 84
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.25

Table S1126.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FOXN3 MUTATED 1 5 2 0 0
FOXN3 WILD-TYPE 68 53 110 1 49
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S1127.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FOXN3 MUTATED 0 6 1
FOXN3 WILD-TYPE 18 92 94
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S1128.  Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FOXN3 MUTATED 0 2 5 0 0
FOXN3 WILD-TYPE 17 32 85 69 1
'SLC16A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S1129.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC16A1 MUTATED 1 0 5
SLC16A1 WILD-TYPE 79 55 147
'SLC16A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S1130.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC16A1 MUTATED 3 1 1
SLC16A1 WILD-TYPE 118 36 85
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S1131.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC16A1 MUTATED 6 0 1
SLC16A1 WILD-TYPE 158 13 79
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.5

Table S1132.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC16A1 MUTATED 1 5 0 1
SLC16A1 WILD-TYPE 48 97 4 101
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S1133.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC16A1 MUTATED 1 6 0
SLC16A1 WILD-TYPE 25 173 84
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S1134.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC16A1 MUTATED 2 3 2 0 0
SLC16A1 WILD-TYPE 67 55 110 1 49
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.64

Table S1135.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC16A1 MUTATED 0 4 1
SLC16A1 WILD-TYPE 18 94 94
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S1136.  Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC16A1 MUTATED 0 2 3 0 0
SLC16A1 WILD-TYPE 17 32 87 69 1
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.18

Table S1137.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TNFRSF9 MUTATED 0 1 9
TNFRSF9 WILD-TYPE 80 54 143

Figure S442.  Get High-res Image Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S1138.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TNFRSF9 MUTATED 6 0 2
TNFRSF9 WILD-TYPE 115 37 84
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 0.91

Table S1139.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TNFRSF9 MUTATED 7 0 2
TNFRSF9 WILD-TYPE 157 13 78
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.57

Table S1140.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TNFRSF9 MUTATED 1 6 0 2
TNFRSF9 WILD-TYPE 48 96 4 100
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S1141.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TNFRSF9 MUTATED 0 9 1
TNFRSF9 WILD-TYPE 26 170 83
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.25

Table S1142.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TNFRSF9 MUTATED 0 3 7 0 0
TNFRSF9 WILD-TYPE 69 55 105 1 49
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S1143.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TNFRSF9 MUTATED 1 4 2
TNFRSF9 WILD-TYPE 17 94 93
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0679 (Fisher's exact test), Q value = 0.25

Table S1144.  Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TNFRSF9 MUTATED 0 0 7 0 0
TNFRSF9 WILD-TYPE 17 34 83 69 1
'RHOQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S1145.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RHOQ MUTATED 0 0 5
RHOQ WILD-TYPE 80 55 147
'RHOQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.57

Table S1146.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RHOQ MUTATED 3 0 0
RHOQ WILD-TYPE 118 37 86
'RHOQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1147.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RHOQ MUTATED 4 0 1
RHOQ WILD-TYPE 160 13 79
'RHOQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S1148.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RHOQ MUTATED 0 4 0 1
RHOQ WILD-TYPE 49 98 4 101
'RHOQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S1149.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RHOQ MUTATED 0 5 0
RHOQ WILD-TYPE 26 174 84
'RHOQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.8

Table S1150.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RHOQ MUTATED 1 2 2 0 0
RHOQ WILD-TYPE 68 56 110 1 49
'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S1151.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RHOQ MUTATED 0 3 0
RHOQ WILD-TYPE 18 95 95
'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S1152.  Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RHOQ MUTATED 0 3 0 0 0
RHOQ WILD-TYPE 17 31 90 69 1

Figure S443.  Get High-res Image Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0077 (Fisher's exact test), Q value = 0.087

Table S1153.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRPF40B MUTATED 1 0 13
PRPF40B WILD-TYPE 79 55 139

Figure S444.  Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF40B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S1154.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRPF40B MUTATED 10 0 1
PRPF40B WILD-TYPE 111 37 85

Figure S445.  Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.95

Table S1155.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRPF40B MUTATED 9 0 3
PRPF40B WILD-TYPE 155 13 77
'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S1156.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRPF40B MUTATED 0 8 0 4
PRPF40B WILD-TYPE 49 94 4 98
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S1157.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRPF40B MUTATED 0 11 3
PRPF40B WILD-TYPE 26 168 81
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.29

Table S1158.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRPF40B MUTATED 2 7 3 0 2
PRPF40B WILD-TYPE 67 51 109 1 47
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.68

Table S1159.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRPF40B MUTATED 1 6 3
PRPF40B WILD-TYPE 17 92 92
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S1160.  Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRPF40B MUTATED 0 3 5 2 0
PRPF40B WILD-TYPE 17 31 85 67 1
'STAT5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S1161.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STAT5B MUTATED 1 1 10
STAT5B WILD-TYPE 79 54 142
'STAT5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S1162.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STAT5B MUTATED 8 0 2
STAT5B WILD-TYPE 113 37 84
'STAT5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.56

Table S1163.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STAT5B MUTATED 8 0 1
STAT5B WILD-TYPE 156 13 79
'STAT5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S1164.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STAT5B MUTATED 0 8 0 1
STAT5B WILD-TYPE 49 94 4 101

Figure S446.  Get High-res Image Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S1165.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STAT5B MUTATED 0 10 2
STAT5B WILD-TYPE 26 169 82
'STAT5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S1166.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STAT5B MUTATED 1 6 4 0 1
STAT5B WILD-TYPE 68 52 108 1 48
'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S1167.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STAT5B MUTATED 1 7 2
STAT5B WILD-TYPE 17 91 93
'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.69

Table S1168.  Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STAT5B MUTATED 0 3 5 2 0
STAT5B WILD-TYPE 17 31 85 67 1
'CFI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1169.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CFI MUTATED 1 1 10
CFI WILD-TYPE 79 54 142
'CFI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.5

Table S1170.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CFI MUTATED 7 0 2
CFI WILD-TYPE 114 37 84
'CFI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.64

Table S1171.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CFI MUTATED 10 0 2
CFI WILD-TYPE 154 13 78
'CFI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S1172.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CFI MUTATED 1 10 0 1
CFI WILD-TYPE 48 92 4 101

Figure S447.  Get High-res Image Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CFI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.84

Table S1173.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CFI MUTATED 0 9 3
CFI WILD-TYPE 26 170 81
'CFI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S1174.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CFI MUTATED 1 5 6 0 0
CFI WILD-TYPE 68 53 106 1 49
'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S1175.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CFI MUTATED 1 4 2
CFI WILD-TYPE 17 94 93
'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S1176.  Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CFI MUTATED 0 1 5 1 0
CFI WILD-TYPE 17 33 85 68 1
'FERMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.32

Table S1177.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FERMT2 MUTATED 0 1 6
FERMT2 WILD-TYPE 80 54 146
'FERMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S1178.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FERMT2 MUTATED 5 0 0
FERMT2 WILD-TYPE 116 37 86
'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.86

Table S1179.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FERMT2 MUTATED 5 0 1
FERMT2 WILD-TYPE 159 13 79
'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S1180.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FERMT2 MUTATED 0 5 0 1
FERMT2 WILD-TYPE 49 97 4 101
'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S1181.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FERMT2 MUTATED 0 7 0
FERMT2 WILD-TYPE 26 172 84
'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.27

Table S1182.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FERMT2 MUTATED 0 4 3 0 0
FERMT2 WILD-TYPE 69 54 109 1 49
'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S1183.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FERMT2 MUTATED 0 5 0
FERMT2 WILD-TYPE 18 93 95
'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.12

Table S1184.  Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FERMT2 MUTATED 0 4 1 0 0
FERMT2 WILD-TYPE 17 30 89 69 1

Figure S448.  Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.18

Table S1185.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ALDH3A1 MUTATED 0 1 9
ALDH3A1 WILD-TYPE 80 54 143

Figure S449.  Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.56

Table S1186.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ALDH3A1 MUTATED 5 0 1
ALDH3A1 WILD-TYPE 116 37 85
'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S1187.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ALDH3A1 MUTATED 8 1 1
ALDH3A1 WILD-TYPE 156 12 79
'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.076 (Fisher's exact test), Q value = 0.26

Table S1188.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ALDH3A1 MUTATED 0 8 0 2
ALDH3A1 WILD-TYPE 49 94 4 100
'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.18

Table S1189.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ALDH3A1 MUTATED 0 10 0
ALDH3A1 WILD-TYPE 26 169 84

Figure S450.  Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S1190.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ALDH3A1 MUTATED 1 4 5 0 0
ALDH3A1 WILD-TYPE 68 54 107 1 49
'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.2

Table S1191.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ALDH3A1 MUTATED 0 6 0
ALDH3A1 WILD-TYPE 18 92 95

Figure S451.  Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.45

Table S1192.  Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ALDH3A1 MUTATED 0 1 5 0 0
ALDH3A1 WILD-TYPE 17 33 85 69 1
'GCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.11

Table S1193.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GCC2 MUTATED 0 0 10
GCC2 WILD-TYPE 80 55 142

Figure S452.  Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S1194.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GCC2 MUTATED 5 0 1
GCC2 WILD-TYPE 116 37 85
'GCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S1195.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GCC2 MUTATED 8 0 2
GCC2 WILD-TYPE 156 13 78
'GCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S1196.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GCC2 MUTATED 0 6 0 4
GCC2 WILD-TYPE 49 96 4 98
'GCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.18

Table S1197.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GCC2 MUTATED 0 10 0
GCC2 WILD-TYPE 26 169 84

Figure S453.  Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.24

Table S1198.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GCC2 MUTATED 0 4 6 0 0
GCC2 WILD-TYPE 69 54 106 1 49
'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S1199.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GCC2 MUTATED 1 1 2
GCC2 WILD-TYPE 17 97 93
'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S1200.  Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GCC2 MUTATED 0 0 4 0 0
GCC2 WILD-TYPE 17 34 86 69 1
'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.2

Table S1201.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NOX5 MUTATED 1 1 12
NOX5 WILD-TYPE 79 54 140

Figure S454.  Get High-res Image Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S1202.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NOX5 MUTATED 8 1 2
NOX5 WILD-TYPE 113 36 84
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1203.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NOX5 MUTATED 8 0 4
NOX5 WILD-TYPE 156 13 76
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1204.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NOX5 MUTATED 0 8 0 4
NOX5 WILD-TYPE 49 94 4 98
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.25

Table S1205.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NOX5 MUTATED 0 13 1
NOX5 WILD-TYPE 26 166 83
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.26

Table S1206.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NOX5 MUTATED 1 7 5 0 1
NOX5 WILD-TYPE 68 51 107 1 48
'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S1207.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NOX5 MUTATED 1 7 2
NOX5 WILD-TYPE 17 91 93
'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.25

Table S1208.  Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NOX5 MUTATED 0 5 4 1 0
NOX5 WILD-TYPE 17 29 86 68 1
'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.13

Table S1209.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIF13A MUTATED 2 1 16
KIF13A WILD-TYPE 78 54 136

Figure S455.  Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.29

Table S1210.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIF13A MUTATED 11 1 2
KIF13A WILD-TYPE 110 36 84
'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.76

Table S1211.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIF13A MUTATED 14 0 5
KIF13A WILD-TYPE 150 13 75
'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S1212.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIF13A MUTATED 1 11 0 7
KIF13A WILD-TYPE 48 91 4 95
'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S1213.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIF13A MUTATED 1 16 3
KIF13A WILD-TYPE 25 163 81
'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 0.067

Table S1214.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIF13A MUTATED 2 11 6 0 1
KIF13A WILD-TYPE 67 47 106 1 48

Figure S456.  Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S1215.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIF13A MUTATED 1 8 3
KIF13A WILD-TYPE 17 90 92
'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S1216.  Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIF13A MUTATED 1 2 7 2 0
KIF13A WILD-TYPE 16 32 83 67 1
'CR1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.56

Table S1217.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CR1L MUTATED 1 2 8
CR1L WILD-TYPE 79 53 144
'CR1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 0.98

Table S1218.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CR1L MUTATED 6 1 3
CR1L WILD-TYPE 115 36 83
'CR1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S1219.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CR1L MUTATED 7 1 3
CR1L WILD-TYPE 157 12 77
'CR1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S1220.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CR1L MUTATED 0 6 0 5
CR1L WILD-TYPE 49 96 4 97
'CR1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.49

Table S1221.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CR1L MUTATED 1 9 1
CR1L WILD-TYPE 25 170 83
'CR1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S1222.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CR1L MUTATED 2 5 3 0 1
CR1L WILD-TYPE 67 53 109 1 48
'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S1223.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CR1L MUTATED 0 6 2
CR1L WILD-TYPE 18 92 93
'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S1224.  Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CR1L MUTATED 0 2 5 1 0
CR1L WILD-TYPE 17 32 85 68 1
'GALNTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S1225.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GALNTL1 MUTATED 1 1 8
GALNTL1 WILD-TYPE 79 54 144
'GALNTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S1226.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GALNTL1 MUTATED 6 0 3
GALNTL1 WILD-TYPE 115 37 83
'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.38

Table S1227.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GALNTL1 MUTATED 2 1 2
GALNTL1 WILD-TYPE 162 12 78
'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1228.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GALNTL1 MUTATED 1 2 0 2
GALNTL1 WILD-TYPE 48 100 4 100
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S1229.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GALNTL1 MUTATED 0 6 4
GALNTL1 WILD-TYPE 26 173 80
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S1230.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GALNTL1 MUTATED 0 4 4 0 2
GALNTL1 WILD-TYPE 69 54 108 1 47
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1231.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GALNTL1 MUTATED 0 4 4
GALNTL1 WILD-TYPE 18 94 91
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 0.91

Table S1232.  Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GALNTL1 MUTATED 0 1 3 4 0
GALNTL1 WILD-TYPE 17 33 87 65 1
'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.1

Table S1233.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SCLT1 MUTATED 0 3 13
SCLT1 WILD-TYPE 80 52 139

Figure S457.  Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S1234.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SCLT1 MUTATED 8 1 1
SCLT1 WILD-TYPE 113 36 85
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S1235.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SCLT1 MUTATED 11 0 2
SCLT1 WILD-TYPE 153 13 78
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.11

Table S1236.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SCLT1 MUTATED 0 11 0 2
SCLT1 WILD-TYPE 49 91 4 100

Figure S458.  Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.17

Table S1237.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SCLT1 MUTATED 0 15 1
SCLT1 WILD-TYPE 26 164 83

Figure S459.  Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00099 (Fisher's exact test), Q value = 0.026

Table S1238.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SCLT1 MUTATED 1 10 5 0 0
SCLT1 WILD-TYPE 68 48 107 1 49

Figure S460.  Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1239.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SCLT1 MUTATED 0 6 1
SCLT1 WILD-TYPE 18 92 94
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S1240.  Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SCLT1 MUTATED 0 3 3 1 0
SCLT1 WILD-TYPE 17 31 87 68 1
'STAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S1241.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STAB1 MUTATED 0 4 23
STAB1 WILD-TYPE 80 51 129

Figure S461.  Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.021

Table S1242.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STAB1 MUTATED 20 0 3
STAB1 WILD-TYPE 101 37 83

Figure S462.  Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S1243.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STAB1 MUTATED 19 1 4
STAB1 WILD-TYPE 145 12 76
'STAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.015

Table S1244.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STAB1 MUTATED 0 19 0 5
STAB1 WILD-TYPE 49 83 4 97

Figure S463.  Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.07

Table S1245.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STAB1 MUTATED 0 25 3
STAB1 WILD-TYPE 26 154 81

Figure S464.  Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.025

Table S1246.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STAB1 MUTATED 2 14 10 0 2
STAB1 WILD-TYPE 67 44 102 1 47

Figure S465.  Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.15

Table S1247.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STAB1 MUTATED 1 15 4
STAB1 WILD-TYPE 17 83 91

Figure S466.  Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S1248.  Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STAB1 MUTATED 0 4 13 3 0
STAB1 WILD-TYPE 17 30 77 66 1
'TP53BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00182 (Fisher's exact test), Q value = 0.038

Table S1249.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TP53BP1 MUTATED 0 1 15
TP53BP1 WILD-TYPE 80 54 137

Figure S467.  Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S1250.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TP53BP1 MUTATED 7 0 5
TP53BP1 WILD-TYPE 114 37 81
'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S1251.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TP53BP1 MUTATED 9 2 4
TP53BP1 WILD-TYPE 155 11 76
'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.69

Table S1252.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TP53BP1 MUTATED 1 8 0 6
TP53BP1 WILD-TYPE 48 94 4 96
'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S1253.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TP53BP1 MUTATED 0 14 2
TP53BP1 WILD-TYPE 26 165 82
'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00348 (Fisher's exact test), Q value = 0.056

Table S1254.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TP53BP1 MUTATED 0 7 9 0 0
TP53BP1 WILD-TYPE 69 51 103 1 49

Figure S468.  Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S1255.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TP53BP1 MUTATED 0 8 2
TP53BP1 WILD-TYPE 18 90 93
'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S1256.  Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TP53BP1 MUTATED 0 2 7 1 0
TP53BP1 WILD-TYPE 17 32 83 68 1
'IFRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.17

Table S1257.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IFRD1 MUTATED 0 0 8
IFRD1 WILD-TYPE 80 55 144

Figure S469.  Get High-res Image Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IFRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.56

Table S1258.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IFRD1 MUTATED 5 0 1
IFRD1 WILD-TYPE 116 37 85
'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S1259.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IFRD1 MUTATED 5 0 3
IFRD1 WILD-TYPE 159 13 77
'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S1260.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IFRD1 MUTATED 0 5 0 3
IFRD1 WILD-TYPE 49 97 4 99
'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.28

Table S1261.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IFRD1 MUTATED 0 8 0
IFRD1 WILD-TYPE 26 171 84
'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.27

Table S1262.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IFRD1 MUTATED 0 4 4 0 0
IFRD1 WILD-TYPE 69 54 108 1 49
'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.2

Table S1263.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IFRD1 MUTATED 0 6 0
IFRD1 WILD-TYPE 18 92 95

Figure S470.  Get High-res Image Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S1264.  Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IFRD1 MUTATED 0 1 5 0 0
IFRD1 WILD-TYPE 17 33 85 69 1
'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.028

Table S1265.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SF3B2 MUTATED 1 0 16
SF3B2 WILD-TYPE 79 55 136

Figure S471.  Get High-res Image Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S1266.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SF3B2 MUTATED 10 1 3
SF3B2 WILD-TYPE 111 36 83
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S1267.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SF3B2 MUTATED 11 1 2
SF3B2 WILD-TYPE 153 12 78
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.23

Table S1268.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SF3B2 MUTATED 1 9 1 3
SF3B2 WILD-TYPE 48 93 3 99
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.6

Table S1269.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SF3B2 MUTATED 0 13 4
SF3B2 WILD-TYPE 26 166 80
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S1270.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SF3B2 MUTATED 1 7 7 0 2
SF3B2 WILD-TYPE 68 51 105 1 47
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S1271.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SF3B2 MUTATED 1 8 4
SF3B2 WILD-TYPE 17 90 91
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S1272.  Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SF3B2 MUTATED 0 4 7 2 0
SF3B2 WILD-TYPE 17 30 83 67 1
'FAM151A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.12

Table S1273.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM151A MUTATED 0 0 9
FAM151A WILD-TYPE 80 55 143

Figure S472.  Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM151A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S1274.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM151A MUTATED 5 0 1
FAM151A WILD-TYPE 116 37 85
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.27

Table S1275.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM151A MUTATED 9 0 0
FAM151A WILD-TYPE 155 13 80
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.17

Table S1276.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM151A MUTATED 0 8 0 1
FAM151A WILD-TYPE 49 94 4 101

Figure S473.  Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.27

Table S1277.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM151A MUTATED 0 9 0
FAM151A WILD-TYPE 26 170 84
'FAM151A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S1278.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM151A MUTATED 1 4 4 0 0
FAM151A WILD-TYPE 68 54 108 1 49
'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S1279.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM151A MUTATED 0 4 1
FAM151A WILD-TYPE 18 94 94
'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.64

Table S1280.  Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM151A MUTATED 0 2 2 1 0
FAM151A WILD-TYPE 17 32 88 68 1
'FHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00344 (Fisher's exact test), Q value = 0.056

Table S1281.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FHDC1 MUTATED 0 1 14
FHDC1 WILD-TYPE 80 54 138

Figure S474.  Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.19

Table S1282.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FHDC1 MUTATED 9 0 1
FHDC1 WILD-TYPE 112 37 85

Figure S475.  Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S1283.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FHDC1 MUTATED 12 0 3
FHDC1 WILD-TYPE 152 13 77
'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.19

Table S1284.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FHDC1 MUTATED 0 11 0 4
FHDC1 WILD-TYPE 49 91 4 98

Figure S476.  Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.37

Table S1285.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FHDC1 MUTATED 0 13 2
FHDC1 WILD-TYPE 26 166 82
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.23

Table S1286.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FHDC1 MUTATED 1 4 10 0 0
FHDC1 WILD-TYPE 68 54 102 1 49
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S1287.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FHDC1 MUTATED 0 7 2
FHDC1 WILD-TYPE 18 91 93
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S1288.  Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FHDC1 MUTATED 0 2 6 1 0
FHDC1 WILD-TYPE 17 32 84 68 1
'FAM46D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.91

Table S1289.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM46D MUTATED 2 1 6
FAM46D WILD-TYPE 78 54 146
'FAM46D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1290.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM46D MUTATED 4 1 3
FAM46D WILD-TYPE 117 36 83
'FAM46D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.69

Table S1291.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM46D MUTATED 6 1 2
FAM46D WILD-TYPE 158 12 78
'FAM46D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1292.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM46D MUTATED 2 3 0 4
FAM46D WILD-TYPE 47 99 4 98
'FAM46D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.96

Table S1293.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM46D MUTATED 1 6 2
FAM46D WILD-TYPE 25 173 82
'FAM46D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1294.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM46D MUTATED 2 2 4 0 1
FAM46D WILD-TYPE 67 56 108 1 48
'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.95

Table S1295.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM46D MUTATED 0 5 3
FAM46D WILD-TYPE 18 93 92
'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.5

Table S1296.  Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM46D MUTATED 2 1 2 3 0
FAM46D WILD-TYPE 15 33 88 66 1
'TLE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.015

Table S1297.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TLE2 MUTATED 0 1 17
TLE2 WILD-TYPE 80 54 135

Figure S477.  Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TLE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.024

Table S1298.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TLE2 MUTATED 15 0 1
TLE2 WILD-TYPE 106 37 85

Figure S478.  Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TLE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S1299.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TLE2 MUTATED 14 0 2
TLE2 WILD-TYPE 150 13 78
'TLE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.035

Table S1300.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TLE2 MUTATED 0 14 0 2
TLE2 WILD-TYPE 49 88 4 100

Figure S479.  Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TLE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S1301.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TLE2 MUTATED 0 16 3
TLE2 WILD-TYPE 26 163 81
'TLE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0081

Table S1302.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TLE2 MUTATED 0 12 6 0 1
TLE2 WILD-TYPE 69 46 106 1 48

Figure S480.  Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TLE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.11

Table S1303.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TLE2 MUTATED 0 12 2
TLE2 WILD-TYPE 18 86 93

Figure S481.  Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TLE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 0.27

Table S1304.  Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TLE2 MUTATED 0 4 9 1 0
TLE2 WILD-TYPE 17 30 81 68 1
'HOXD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S1305.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HOXD8 MUTATED 0 1 6
HOXD8 WILD-TYPE 80 54 146
'HOXD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S1306.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HOXD8 MUTATED 4 0 1
HOXD8 WILD-TYPE 117 37 85
'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S1307.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HOXD8 MUTATED 3 1 2
HOXD8 WILD-TYPE 161 12 78
'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1308.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HOXD8 MUTATED 1 3 0 2
HOXD8 WILD-TYPE 48 99 4 100
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S1309.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HOXD8 MUTATED 1 6 0
HOXD8 WILD-TYPE 25 173 84
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S1310.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HOXD8 MUTATED 1 4 2 0 0
HOXD8 WILD-TYPE 68 54 110 1 49
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.26

Table S1311.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HOXD8 MUTATED 1 4 0
HOXD8 WILD-TYPE 17 94 95
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S1312.  Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HOXD8 MUTATED 0 1 4 0 0
HOXD8 WILD-TYPE 17 33 86 69 1
'ZIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S1313.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZIM3 MUTATED 1 1 8
ZIM3 WILD-TYPE 79 54 144
'ZIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.76

Table S1314.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZIM3 MUTATED 2 1 3
ZIM3 WILD-TYPE 119 36 83
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S1315.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZIM3 MUTATED 5 1 3
ZIM3 WILD-TYPE 159 12 77
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S1316.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZIM3 MUTATED 0 5 0 4
ZIM3 WILD-TYPE 49 97 4 98
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S1317.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZIM3 MUTATED 1 8 1
ZIM3 WILD-TYPE 25 171 83
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S1318.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZIM3 MUTATED 1 3 6 0 0
ZIM3 WILD-TYPE 68 55 106 1 49
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S1319.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZIM3 MUTATED 0 5 1
ZIM3 WILD-TYPE 18 93 94
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 0.9

Table S1320.  Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZIM3 MUTATED 0 1 4 1 0
ZIM3 WILD-TYPE 17 33 86 68 1
'DDX60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.11

Table S1321.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DDX60 MUTATED 0 0 10
DDX60 WILD-TYPE 80 55 142

Figure S482.  Get High-res Image Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S1322.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DDX60 MUTATED 5 0 2
DDX60 WILD-TYPE 116 37 84
'DDX60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.88

Table S1323.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DDX60 MUTATED 4 0 3
DDX60 WILD-TYPE 160 13 77
'DDX60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.72

Table S1324.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DDX60 MUTATED 0 4 0 3
DDX60 WILD-TYPE 49 98 4 99
'DDX60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S1325.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DDX60 MUTATED 0 9 1
DDX60 WILD-TYPE 26 170 83
'DDX60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.24

Table S1326.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DDX60 MUTATED 0 4 6 0 0
DDX60 WILD-TYPE 69 54 106 1 49
'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S1327.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DDX60 MUTATED 1 3 1
DDX60 WILD-TYPE 17 95 94
'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S1328.  Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DDX60 MUTATED 0 0 4 1 0
DDX60 WILD-TYPE 17 34 86 68 1
'BEND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.26

Table S1329.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BEND3 MUTATED 2 0 10
BEND3 WILD-TYPE 78 55 142
'BEND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S1330.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BEND3 MUTATED 5 0 4
BEND3 WILD-TYPE 116 37 82
'BEND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S1331.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BEND3 MUTATED 6 1 3
BEND3 WILD-TYPE 158 12 77
'BEND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S1332.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BEND3 MUTATED 0 6 0 4
BEND3 WILD-TYPE 49 96 4 98
'BEND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S1333.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BEND3 MUTATED 0 11 1
BEND3 WILD-TYPE 26 168 83
'BEND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S1334.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BEND3 MUTATED 0 7 4 0 1
BEND3 WILD-TYPE 69 51 108 1 48

Figure S483.  Get High-res Image Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.21

Table S1335.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BEND3 MUTATED 0 8 1
BEND3 WILD-TYPE 18 90 94

Figure S484.  Get High-res Image Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.49

Table S1336.  Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BEND3 MUTATED 0 3 5 1 0
BEND3 WILD-TYPE 17 31 85 68 1
'EIF4G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S1337.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EIF4G3 MUTATED 2 1 11
EIF4G3 WILD-TYPE 78 54 141
'EIF4G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S1338.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EIF4G3 MUTATED 12 1 1
EIF4G3 WILD-TYPE 109 36 85

Figure S485.  Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.56

Table S1339.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EIF4G3 MUTATED 11 0 2
EIF4G3 WILD-TYPE 153 13 78
'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.2

Table S1340.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EIF4G3 MUTATED 0 10 0 3
EIF4G3 WILD-TYPE 49 92 4 99

Figure S486.  Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.28

Table S1341.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EIF4G3 MUTATED 1 13 1
EIF4G3 WILD-TYPE 25 166 83
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S1342.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EIF4G3 MUTATED 2 8 5 0 0
EIF4G3 WILD-TYPE 67 50 107 1 49

Figure S487.  Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 0.064

Table S1343.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EIF4G3 MUTATED 1 12 1
EIF4G3 WILD-TYPE 17 86 94

Figure S488.  Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.27

Table S1344.  Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EIF4G3 MUTATED 0 4 9 1 0
EIF4G3 WILD-TYPE 17 30 81 68 1
'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.23

Table S1345.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MFRP MUTATED 0 2 9
MFRP WILD-TYPE 80 53 143
'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00431 (Fisher's exact test), Q value = 0.063

Table S1346.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MFRP MUTATED 10 0 0
MFRP WILD-TYPE 111 37 86

Figure S489.  Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.19

Table S1347.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MFRP MUTATED 9 1 0
MFRP WILD-TYPE 155 12 80

Figure S490.  Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S1348.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MFRP MUTATED 0 9 0 1
MFRP WILD-TYPE 49 93 4 101

Figure S491.  Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S1349.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MFRP MUTATED 0 10 1
MFRP WILD-TYPE 26 169 83
'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.23

Table S1350.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MFRP MUTATED 1 6 4 0 0
MFRP WILD-TYPE 68 52 108 1 49
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.19

Table S1351.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MFRP MUTATED 1 6 0
MFRP WILD-TYPE 17 92 95

Figure S492.  Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S1352.  Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MFRP MUTATED 0 3 4 0 0
MFRP WILD-TYPE 17 31 86 69 1
'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.016

Table S1353.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EIF5B MUTATED 0 1 17
EIF5B WILD-TYPE 80 54 135

Figure S493.  Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.13

Table S1354.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EIF5B MUTATED 12 1 1
EIF5B WILD-TYPE 109 36 85

Figure S494.  Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S1355.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EIF5B MUTATED 12 1 2
EIF5B WILD-TYPE 152 12 78
'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0741 (Fisher's exact test), Q value = 0.26

Table S1356.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EIF5B MUTATED 1 11 0 3
EIF5B WILD-TYPE 48 91 4 99
'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.11

Table S1357.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EIF5B MUTATED 0 17 1
EIF5B WILD-TYPE 26 162 83

Figure S495.  Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.019

Table S1358.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EIF5B MUTATED 0 9 9 0 0
EIF5B WILD-TYPE 69 49 103 1 49

Figure S496.  Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.23

Table S1359.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EIF5B MUTATED 1 10 2
EIF5B WILD-TYPE 17 88 93
'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.25

Table S1360.  Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EIF5B MUTATED 0 5 7 1 0
EIF5B WILD-TYPE 17 29 83 68 1
'FANCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S1361.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FANCE MUTATED 0 0 6
FANCE WILD-TYPE 80 55 146
'FANCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S1362.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FANCE MUTATED 4 0 1
FANCE WILD-TYPE 117 37 85
'FANCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S1363.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FANCE MUTATED 4 1 0
FANCE WILD-TYPE 160 12 80
'FANCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S1364.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FANCE MUTATED 0 4 0 1
FANCE WILD-TYPE 49 98 4 101
'FANCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S1365.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FANCE MUTATED 0 7 0
FANCE WILD-TYPE 26 172 84
'FANCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S1366.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FANCE MUTATED 0 3 4 0 0
FANCE WILD-TYPE 69 55 108 1 49
'FANCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.64

Table S1367.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FANCE MUTATED 0 4 1
FANCE WILD-TYPE 18 94 94
'FANCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S1368.  Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FANCE MUTATED 0 2 3 0 0
FANCE WILD-TYPE 17 32 87 69 1
'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.25

Table S1369.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PALB2 MUTATED 0 1 8
PALB2 WILD-TYPE 80 54 144
'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.5

Table S1370.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PALB2 MUTATED 7 0 2
PALB2 WILD-TYPE 114 37 84
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.49

Table S1371.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PALB2 MUTATED 5 1 1
PALB2 WILD-TYPE 159 12 79
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S1372.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PALB2 MUTATED 0 5 0 2
PALB2 WILD-TYPE 49 97 4 100
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S1373.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PALB2 MUTATED 0 8 1
PALB2 WILD-TYPE 26 171 83
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S1374.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PALB2 MUTATED 0 4 4 0 1
PALB2 WILD-TYPE 69 54 108 1 48
'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.27

Table S1375.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PALB2 MUTATED 0 7 1
PALB2 WILD-TYPE 18 91 94
'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S1376.  Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PALB2 MUTATED 0 2 5 1 0
PALB2 WILD-TYPE 17 32 85 68 1
'ISG20L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.23

Table S1377.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ISG20L2 MUTATED 0 0 7
ISG20L2 WILD-TYPE 80 55 145
'ISG20L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S1378.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ISG20L2 MUTATED 5 1 1
ISG20L2 WILD-TYPE 116 36 85
'ISG20L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.86

Table S1379.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ISG20L2 MUTATED 5 0 1
ISG20L2 WILD-TYPE 159 13 79
'ISG20L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S1380.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ISG20L2 MUTATED 0 5 0 1
ISG20L2 WILD-TYPE 49 97 4 101
'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S1381.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ISG20L2 MUTATED 0 7 0
ISG20L2 WILD-TYPE 26 172 84
'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.27

Table S1382.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ISG20L2 MUTATED 0 4 3 0 0
ISG20L2 WILD-TYPE 69 54 109 1 49
'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S1383.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ISG20L2 MUTATED 0 7 0
ISG20L2 WILD-TYPE 18 91 95

Figure S497.  Get High-res Image Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S1384.  Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ISG20L2 MUTATED 0 2 5 0 0
ISG20L2 WILD-TYPE 17 32 85 69 1
'ITGA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S1385.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ITGA6 MUTATED 1 0 5
ITGA6 WILD-TYPE 79 55 147
'ITGA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S1386.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ITGA6 MUTATED 3 0 1
ITGA6 WILD-TYPE 118 37 85
'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.27

Table S1387.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ITGA6 MUTATED 5 1 0
ITGA6 WILD-TYPE 159 12 80
'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.73

Table S1388.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ITGA6 MUTATED 0 4 0 2
ITGA6 WILD-TYPE 49 98 4 100
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S1389.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ITGA6 MUTATED 0 6 0
ITGA6 WILD-TYPE 26 173 84
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.25

Table S1390.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ITGA6 MUTATED 0 4 2 0 0
ITGA6 WILD-TYPE 69 54 110 1 49
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S1391.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ITGA6 MUTATED 0 3 0
ITGA6 WILD-TYPE 18 95 95
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S1392.  Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ITGA6 MUTATED 0 1 2 0 0
ITGA6 WILD-TYPE 17 33 88 69 1
'SDAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.23

Table S1393.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SDAD1 MUTATED 0 0 7
SDAD1 WILD-TYPE 80 55 145
'SDAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S1394.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SDAD1 MUTATED 5 0 0
SDAD1 WILD-TYPE 116 37 86
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.86

Table S1395.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SDAD1 MUTATED 5 0 1
SDAD1 WILD-TYPE 159 13 79
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S1396.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SDAD1 MUTATED 0 5 0 1
SDAD1 WILD-TYPE 49 97 4 101
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S1397.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SDAD1 MUTATED 0 6 1
SDAD1 WILD-TYPE 26 173 83
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S1398.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SDAD1 MUTATED 0 4 2 0 1
SDAD1 WILD-TYPE 69 54 110 1 48
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S1399.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SDAD1 MUTATED 0 3 0
SDAD1 WILD-TYPE 18 95 95
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S1400.  Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SDAD1 MUTATED 0 0 3 0 0
SDAD1 WILD-TYPE 17 34 87 69 1
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1401.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDKN2A MUTATED 4 2 6
CDKN2A WILD-TYPE 76 53 146
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.51

Table S1402.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDKN2A MUTATED 5 3 2
CDKN2A WILD-TYPE 116 34 84
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.39

Table S1403.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDKN2A MUTATED 9 1 1
CDKN2A WILD-TYPE 155 12 79
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0969 (Fisher's exact test), Q value = 0.29

Table S1404.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDKN2A MUTATED 4 6 0 1
CDKN2A WILD-TYPE 45 96 4 101
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S1405.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDKN2A MUTATED 1 10 1
CDKN2A WILD-TYPE 25 169 83
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S1406.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDKN2A MUTATED 3 4 4 0 1
CDKN2A WILD-TYPE 66 54 108 1 48
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.23

Table S1407.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDKN2A MUTATED 2 6 1
CDKN2A WILD-TYPE 16 92 94
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.17

Table S1408.  Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDKN2A MUTATED 1 5 2 1 0
CDKN2A WILD-TYPE 16 29 88 68 1

Figure S498.  Get High-res Image Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0057 (Fisher's exact test), Q value = 0.074

Table S1409.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RTN2 MUTATED 0 0 11
RTN2 WILD-TYPE 80 55 141

Figure S499.  Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S1410.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RTN2 MUTATED 7 0 1
RTN2 WILD-TYPE 114 37 85
'RTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1411.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RTN2 MUTATED 7 0 3
RTN2 WILD-TYPE 157 13 77
'RTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S1412.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RTN2 MUTATED 0 7 0 3
RTN2 WILD-TYPE 49 95 4 99
'RTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S1413.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RTN2 MUTATED 0 11 0
RTN2 WILD-TYPE 26 168 84

Figure S500.  Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1414.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RTN2 MUTATED 1 5 5 0 0
RTN2 WILD-TYPE 68 53 107 1 49
'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.15

Table S1415.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RTN2 MUTATED 0 7 0
RTN2 WILD-TYPE 18 91 95

Figure S501.  Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S1416.  Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RTN2 MUTATED 0 2 5 0 0
RTN2 WILD-TYPE 17 32 85 69 1
'DNAJC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00584 (Fisher's exact test), Q value = 0.075

Table S1417.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DNAJC1 MUTATED 0 0 11
DNAJC1 WILD-TYPE 80 55 141

Figure S502.  Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S1418.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DNAJC1 MUTATED 9 0 1
DNAJC1 WILD-TYPE 112 37 85

Figure S503.  Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S1419.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DNAJC1 MUTATED 8 0 2
DNAJC1 WILD-TYPE 156 13 78
'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.26

Table S1420.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DNAJC1 MUTATED 0 8 0 2
DNAJC1 WILD-TYPE 49 94 4 100
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S1421.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DNAJC1 MUTATED 0 9 2
DNAJC1 WILD-TYPE 26 170 82
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.39

Table S1422.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DNAJC1 MUTATED 0 4 5 0 2
DNAJC1 WILD-TYPE 69 54 107 1 47
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S1423.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DNAJC1 MUTATED 1 7 2
DNAJC1 WILD-TYPE 17 91 93
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.69

Table S1424.  Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DNAJC1 MUTATED 0 3 5 2 0
DNAJC1 WILD-TYPE 17 31 85 67 1
'TP53RK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S1425.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TP53RK MUTATED 0 1 5
TP53RK WILD-TYPE 80 54 147
'TP53RK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S1426.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TP53RK MUTATED 3 1 1
TP53RK WILD-TYPE 118 36 85
'TP53RK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S1427.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TP53RK MUTATED 5 0 0
TP53RK WILD-TYPE 159 13 80
'TP53RK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.24

Table S1428.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TP53RK MUTATED 0 5 0 0
TP53RK WILD-TYPE 49 97 4 102
'TP53RK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.91

Table S1429.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TP53RK MUTATED 0 5 1
TP53RK WILD-TYPE 26 174 83
'TP53RK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S1430.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TP53RK MUTATED 1 3 1 0 1
TP53RK WILD-TYPE 68 55 111 1 48
'TP53RK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S1431.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TP53RK MUTATED 0 3 1
TP53RK WILD-TYPE 18 95 94
'TP53RK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S1432.  Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TP53RK MUTATED 0 2 1 1 0
TP53RK WILD-TYPE 17 32 89 68 1
'CCDC108 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00299 (Fisher's exact test), Q value = 0.052

Table S1433.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CCDC108 MUTATED 1 3 20
CCDC108 WILD-TYPE 79 52 132

Figure S504.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC108 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0083 (Fisher's exact test), Q value = 0.09

Table S1434.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CCDC108 MUTATED 16 1 2
CCDC108 WILD-TYPE 105 36 84

Figure S505.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S1435.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CCDC108 MUTATED 21 0 2
CCDC108 WILD-TYPE 143 13 78

Figure S506.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0066

Table S1436.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CCDC108 MUTATED 0 20 0 3
CCDC108 WILD-TYPE 49 82 4 99

Figure S507.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 0.058

Table S1437.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CCDC108 MUTATED 0 23 2
CCDC108 WILD-TYPE 26 156 82

Figure S508.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S1438.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CCDC108 MUTATED 2 16 7 0 0
CCDC108 WILD-TYPE 67 42 105 1 49

Figure S509.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.13

Table S1439.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CCDC108 MUTATED 1 14 3
CCDC108 WILD-TYPE 17 84 92

Figure S510.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.16

Table S1440.  Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CCDC108 MUTATED 0 7 9 2 0
CCDC108 WILD-TYPE 17 27 81 67 1

Figure S511.  Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S1441.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PYGO2 MUTATED 0 1 6
PYGO2 WILD-TYPE 80 54 146
'PYGO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S1442.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PYGO2 MUTATED 7 0 0
PYGO2 WILD-TYPE 114 37 86

Figure S512.  Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S1443.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PYGO2 MUTATED 7 0 0
PYGO2 WILD-TYPE 157 13 80
'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S1444.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PYGO2 MUTATED 0 7 0 0
PYGO2 WILD-TYPE 49 95 4 102

Figure S513.  Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S1445.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PYGO2 MUTATED 0 7 0
PYGO2 WILD-TYPE 26 172 84
'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.27

Table S1446.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PYGO2 MUTATED 0 4 3 0 0
PYGO2 WILD-TYPE 69 54 109 1 49
'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.2

Table S1447.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PYGO2 MUTATED 0 6 0
PYGO2 WILD-TYPE 18 92 95

Figure S514.  Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.18

Table S1448.  Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PYGO2 MUTATED 0 4 2 0 0
PYGO2 WILD-TYPE 17 30 88 69 1

Figure S515.  Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S1449.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C1R MUTATED 0 0 5
C1R WILD-TYPE 80 55 147
'C1R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.91

Table S1450.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C1R MUTATED 3 0 1
C1R WILD-TYPE 118 37 85
'C1R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.38

Table S1451.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C1R MUTATED 2 1 0
C1R WILD-TYPE 162 12 80
'C1R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1452.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C1R MUTATED 0 2 0 1
C1R WILD-TYPE 49 100 4 101
'C1R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1453.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C1R MUTATED 0 4 1
C1R WILD-TYPE 26 175 83
'C1R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S1454.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C1R MUTATED 0 2 2 0 1
C1R WILD-TYPE 69 56 110 1 48
'C1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1455.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C1R MUTATED 0 2 1
C1R WILD-TYPE 18 96 94
'C1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.91

Table S1456.  Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C1R MUTATED 0 1 1 1 0
C1R WILD-TYPE 17 33 89 68 1
'FGGY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S1457.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FGGY MUTATED 1 2 6
FGGY WILD-TYPE 79 53 146
'FGGY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S1458.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FGGY MUTATED 4 0 1
FGGY WILD-TYPE 117 37 85
'FGGY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S1459.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FGGY MUTATED 8 0 1
FGGY WILD-TYPE 156 13 79
'FGGY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1460.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FGGY MUTATED 0 6 0 3
FGGY WILD-TYPE 49 96 4 99
'FGGY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.29

Table S1461.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FGGY MUTATED 1 8 0
FGGY WILD-TYPE 25 171 84
'FGGY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.27

Table S1462.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FGGY MUTATED 2 5 2 0 0
FGGY WILD-TYPE 67 53 110 1 49
'FGGY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S1463.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FGGY MUTATED 0 4 2
FGGY WILD-TYPE 18 94 93
'FGGY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.45

Table S1464.  Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FGGY MUTATED 0 1 5 0 0
FGGY WILD-TYPE 17 33 85 69 1
'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.13

Table S1465.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MSH6 MUTATED 2 1 16
MSH6 WILD-TYPE 78 54 136

Figure S516.  Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.1

Table S1466.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MSH6 MUTATED 13 1 1
MSH6 WILD-TYPE 108 36 85

Figure S517.  Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.73

Table S1467.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MSH6 MUTATED 13 0 4
MSH6 WILD-TYPE 151 13 76
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00667 (Fisher's exact test), Q value = 0.081

Table S1468.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MSH6 MUTATED 0 12 1 4
MSH6 WILD-TYPE 49 90 3 98

Figure S518.  Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1469.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MSH6 MUTATED 0 16 3
MSH6 WILD-TYPE 26 163 81
'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S1470.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MSH6 MUTATED 1 7 9 0 2
MSH6 WILD-TYPE 68 51 103 1 47
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.28

Table S1471.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MSH6 MUTATED 0 10 3
MSH6 WILD-TYPE 18 88 92
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S1472.  Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MSH6 MUTATED 0 3 8 2 0
MSH6 WILD-TYPE 17 31 82 67 1
'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.18

Table S1473.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RNF111 MUTATED 0 1 9
RNF111 WILD-TYPE 80 54 143

Figure S519.  Get High-res Image Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S1474.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RNF111 MUTATED 4 0 1
RNF111 WILD-TYPE 117 37 85
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S1475.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RNF111 MUTATED 5 0 4
RNF111 WILD-TYPE 159 13 76
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S1476.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RNF111 MUTATED 0 5 0 4
RNF111 WILD-TYPE 49 97 4 98
'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S1477.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RNF111 MUTATED 0 9 1
RNF111 WILD-TYPE 26 170 83
'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S1478.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RNF111 MUTATED 1 5 3 0 1
RNF111 WILD-TYPE 68 53 109 1 48
'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.26

Table S1479.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RNF111 MUTATED 1 4 0
RNF111 WILD-TYPE 17 94 95
'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S1480.  Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RNF111 MUTATED 0 0 5 0 0
RNF111 WILD-TYPE 17 34 85 69 1
'ABCA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S1481.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ABCA6 MUTATED 0 1 11
ABCA6 WILD-TYPE 80 54 141

Figure S520.  Get High-res Image Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.26

Table S1482.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ABCA6 MUTATED 8 0 1
ABCA6 WILD-TYPE 113 37 85
'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 0.95

Table S1483.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ABCA6 MUTATED 9 0 3
ABCA6 WILD-TYPE 155 13 77
'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.25

Table S1484.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ABCA6 MUTATED 0 9 0 3
ABCA6 WILD-TYPE 49 93 4 99
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S1485.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ABCA6 MUTATED 0 11 2
ABCA6 WILD-TYPE 26 168 82
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.42

Table S1486.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ABCA6 MUTATED 2 6 4 0 1
ABCA6 WILD-TYPE 67 52 108 1 48
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S1487.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ABCA6 MUTATED 1 6 2
ABCA6 WILD-TYPE 17 92 93
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 0.85

Table S1488.  Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ABCA6 MUTATED 0 2 5 2 0
ABCA6 WILD-TYPE 17 32 85 67 1
'WDR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.013

Table S1489.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WDR7 MUTATED 0 0 16
WDR7 WILD-TYPE 80 55 136

Figure S521.  Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.29

Table S1490.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WDR7 MUTATED 11 1 2
WDR7 WILD-TYPE 110 36 84
'WDR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S1491.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WDR7 MUTATED 11 1 3
WDR7 WILD-TYPE 153 12 77
'WDR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.19

Table S1492.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WDR7 MUTATED 0 11 0 4
WDR7 WILD-TYPE 49 91 4 98

Figure S522.  Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S1493.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WDR7 MUTATED 0 14 3
WDR7 WILD-TYPE 26 165 81
'WDR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00244 (Fisher's exact test), Q value = 0.046

Table S1494.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WDR7 MUTATED 0 9 7 0 1
WDR7 WILD-TYPE 69 49 105 1 48

Figure S523.  Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S1495.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WDR7 MUTATED 0 12 2
WDR7 WILD-TYPE 18 86 93

Figure S524.  Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S1496.  Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WDR7 MUTATED 0 4 8 2 0
WDR7 WILD-TYPE 17 30 82 67 1
'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0087

Table S1497.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZC3H13 MUTATED 2 1 25
ZC3H13 WILD-TYPE 78 54 127

Figure S525.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00149 (Fisher's exact test), Q value = 0.034

Table S1498.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZC3H13 MUTATED 18 0 3
ZC3H13 WILD-TYPE 103 37 83

Figure S526.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00717 (Fisher's exact test), Q value = 0.084

Table S1499.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZC3H13 MUTATED 24 1 2
ZC3H13 WILD-TYPE 140 12 78

Figure S527.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0087

Table S1500.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZC3H13 MUTATED 1 22 0 4
ZC3H13 WILD-TYPE 48 80 4 98

Figure S528.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.015

Table S1501.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZC3H13 MUTATED 1 27 1
ZC3H13 WILD-TYPE 25 152 83

Figure S529.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S1502.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZC3H13 MUTATED 3 17 8 0 1
ZC3H13 WILD-TYPE 66 41 104 1 48

Figure S530.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.13

Table S1503.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZC3H13 MUTATED 1 14 3
ZC3H13 WILD-TYPE 17 84 92

Figure S531.  Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.27

Table S1504.  Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZC3H13 MUTATED 0 4 12 2 0
ZC3H13 WILD-TYPE 17 30 78 67 1
'IGFBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.6

Table S1505.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IGFBP7 MUTATED 0 0 3
IGFBP7 WILD-TYPE 80 55 149
'IGFBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.57

Table S1506.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IGFBP7 MUTATED 3 0 0
IGFBP7 WILD-TYPE 118 37 86
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.74

Table S1507.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IGFBP7 MUTATED 3 0 0
IGFBP7 WILD-TYPE 161 13 80
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S1508.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IGFBP7 MUTATED 0 3 0 0
IGFBP7 WILD-TYPE 49 99 4 102
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S1509.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IGFBP7 MUTATED 0 4 0
IGFBP7 WILD-TYPE 26 175 84
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S1510.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IGFBP7 MUTATED 0 4 0 0 0
IGFBP7 WILD-TYPE 69 54 112 1 49

Figure S532.  Get High-res Image Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S1511.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IGFBP7 MUTATED 0 3 0
IGFBP7 WILD-TYPE 18 95 95
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S1512.  Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IGFBP7 MUTATED 0 2 1 0 0
IGFBP7 WILD-TYPE 17 32 89 69 1
'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S1513.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HNF1B MUTATED 0 0 6
HNF1B WILD-TYPE 80 55 146
'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S1514.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HNF1B MUTATED 5 0 0
HNF1B WILD-TYPE 116 37 86
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S1515.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HNF1B MUTATED 4 1 0
HNF1B WILD-TYPE 160 12 80
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S1516.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HNF1B MUTATED 1 3 0 1
HNF1B WILD-TYPE 48 99 4 101
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.41

Table S1517.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HNF1B MUTATED 1 5 0
HNF1B WILD-TYPE 25 174 84
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.019

Table S1518.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HNF1B MUTATED 0 4 1 1 0
HNF1B WILD-TYPE 69 54 111 0 49

Figure S533.  Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.49

Table S1519.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HNF1B MUTATED 1 3 1
HNF1B WILD-TYPE 17 95 94
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S1520.  Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HNF1B MUTATED 0 1 3 0 1
HNF1B WILD-TYPE 17 33 87 69 0

Figure S534.  Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.18

Table S1521.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM113B MUTATED 0 2 10
FAM113B WILD-TYPE 80 53 142

Figure S535.  Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.46

Table S1522.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM113B MUTATED 8 0 3
FAM113B WILD-TYPE 113 37 83
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S1523.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM113B MUTATED 8 1 3
FAM113B WILD-TYPE 156 12 77
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S1524.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM113B MUTATED 0 8 0 4
FAM113B WILD-TYPE 49 94 4 98
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.27

Table S1525.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM113B MUTATED 0 12 1
FAM113B WILD-TYPE 26 167 83
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.12

Table S1526.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM113B MUTATED 0 6 7 0 0
FAM113B WILD-TYPE 69 52 105 1 49

Figure S536.  Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S1527.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM113B MUTATED 1 8 2
FAM113B WILD-TYPE 17 90 93
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S1528.  Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM113B MUTATED 0 3 7 1 0
FAM113B WILD-TYPE 17 31 83 68 1
'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S1529.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RRS1 MUTATED 2 0 5
RRS1 WILD-TYPE 78 55 147
'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S1530.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RRS1 MUTATED 5 0 0
RRS1 WILD-TYPE 116 37 86
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1531.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RRS1 MUTATED 7 0 0
RRS1 WILD-TYPE 157 13 80
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.2

Table S1532.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RRS1 MUTATED 1 6 0 0
RRS1 WILD-TYPE 48 96 4 102

Figure S537.  Get High-res Image Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S1533.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RRS1 MUTATED 0 7 0
RRS1 WILD-TYPE 26 172 84
'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1534.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RRS1 MUTATED 0 3 4 0 0
RRS1 WILD-TYPE 69 55 108 1 49
'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.49

Table S1535.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RRS1 MUTATED 1 3 1
RRS1 WILD-TYPE 17 95 94
'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S1536.  Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RRS1 MUTATED 1 1 3 0 0
RRS1 WILD-TYPE 16 33 87 69 1
'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.031

Table S1537.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WNK4 MUTATED 1 1 19
WNK4 WILD-TYPE 79 54 133

Figure S538.  Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.26

Table S1538.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WNK4 MUTATED 12 2 2
WNK4 WILD-TYPE 109 35 84
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1539.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WNK4 MUTATED 11 1 5
WNK4 WILD-TYPE 153 12 75
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.39

Table S1540.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WNK4 MUTATED 1 11 0 5
WNK4 WILD-TYPE 48 91 4 97
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.24

Table S1541.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WNK4 MUTATED 1 18 2
WNK4 WILD-TYPE 25 161 82
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S1542.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WNK4 MUTATED 3 7 10 0 1
WNK4 WILD-TYPE 66 51 102 1 48
'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.26

Table S1543.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WNK4 MUTATED 1 11 3
WNK4 WILD-TYPE 17 87 92
'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S1544.  Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WNK4 MUTATED 1 4 8 2 0
WNK4 WILD-TYPE 16 30 82 67 1
'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S1545.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RAD51AP2 MUTATED 1 2 9
RAD51AP2 WILD-TYPE 79 53 143
'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S1546.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RAD51AP2 MUTATED 6 2 2
RAD51AP2 WILD-TYPE 115 35 84
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.82

Table S1547.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RAD51AP2 MUTATED 8 0 2
RAD51AP2 WILD-TYPE 156 13 78
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S1548.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RAD51AP2 MUTATED 1 7 0 2
RAD51AP2 WILD-TYPE 48 95 4 100
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.18

Table S1549.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RAD51AP2 MUTATED 2 10 0
RAD51AP2 WILD-TYPE 24 169 84

Figure S539.  Get High-res Image Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.55

Table S1550.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RAD51AP2 MUTATED 3 4 5 0 0
RAD51AP2 WILD-TYPE 66 54 107 1 49
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1551.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RAD51AP2 MUTATED 1 6 1
RAD51AP2 WILD-TYPE 17 92 94
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S1552.  Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RAD51AP2 MUTATED 1 3 4 0 0
RAD51AP2 WILD-TYPE 16 31 86 69 1
'PIGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.11

Table S1553.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIGB MUTATED 0 0 10
PIGB WILD-TYPE 80 55 142

Figure S540.  Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S1554.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIGB MUTATED 6 0 1
PIGB WILD-TYPE 115 37 85
'PIGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.91

Table S1555.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIGB MUTATED 7 0 2
PIGB WILD-TYPE 157 13 78
'PIGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S1556.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIGB MUTATED 0 5 0 4
PIGB WILD-TYPE 49 97 4 98
'PIGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S1557.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIGB MUTATED 0 9 1
PIGB WILD-TYPE 26 170 83
'PIGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.28

Table S1558.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIGB MUTATED 0 5 4 0 1
PIGB WILD-TYPE 69 53 108 1 48
'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1559.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIGB MUTATED 0 3 3
PIGB WILD-TYPE 18 95 92
'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.9

Table S1560.  Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIGB MUTATED 0 1 4 1 0
PIGB WILD-TYPE 17 33 86 68 1
'OGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.64

Table S1561.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OGDH MUTATED 1 1 7
OGDH WILD-TYPE 79 54 145
'OGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 0.91

Table S1562.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OGDH MUTATED 3 0 1
OGDH WILD-TYPE 118 37 85
'OGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 0.91

Table S1563.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OGDH MUTATED 7 0 2
OGDH WILD-TYPE 157 13 78
'OGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1564.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OGDH MUTATED 0 6 0 3
OGDH WILD-TYPE 49 96 4 99
'OGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.64

Table S1565.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OGDH MUTATED 1 7 1
OGDH WILD-TYPE 25 172 83
'OGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S1566.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OGDH MUTATED 1 6 2 0 0
OGDH WILD-TYPE 68 52 110 1 49

Figure S541.  Get High-res Image Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1567.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OGDH MUTATED 0 3 2
OGDH WILD-TYPE 18 95 93
'OGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S1568.  Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OGDH MUTATED 0 3 1 1 0
OGDH WILD-TYPE 17 31 89 68 1
'SERPINB12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S1569.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SERPINB12 MUTATED 3 0 5
SERPINB12 WILD-TYPE 77 55 147
'SERPINB12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S1570.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SERPINB12 MUTATED 3 1 1
SERPINB12 WILD-TYPE 118 36 85
'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.73

Table S1571.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SERPINB12 MUTATED 6 0 1
SERPINB12 WILD-TYPE 158 13 79
'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S1572.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SERPINB12 MUTATED 0 6 0 1
SERPINB12 WILD-TYPE 49 96 4 101
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S1573.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SERPINB12 MUTATED 1 7 0
SERPINB12 WILD-TYPE 25 172 84
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.25

Table S1574.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SERPINB12 MUTATED 1 5 2 0 0
SERPINB12 WILD-TYPE 68 53 110 1 49
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S1575.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SERPINB12 MUTATED 0 5 0
SERPINB12 WILD-TYPE 18 93 95
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S1576.  Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SERPINB12 MUTATED 0 2 3 0 0
SERPINB12 WILD-TYPE 17 32 87 69 1
'HEXDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1577.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HEXDC MUTATED 0 0 5
HEXDC WILD-TYPE 80 55 147
'HEXDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S1578.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HEXDC MUTATED 3 0 1
HEXDC WILD-TYPE 118 37 85
'HEXDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1579.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HEXDC MUTATED 3 0 1
HEXDC WILD-TYPE 161 13 79
'HEXDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S1580.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HEXDC MUTATED 0 3 0 1
HEXDC WILD-TYPE 49 99 4 101
'HEXDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1581.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HEXDC MUTATED 0 4 1
HEXDC WILD-TYPE 26 175 83
'HEXDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.76

Table S1582.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HEXDC MUTATED 0 1 3 0 1
HEXDC WILD-TYPE 69 57 109 1 48
'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1583.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HEXDC MUTATED 0 2 1
HEXDC WILD-TYPE 18 96 94
'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1584.  Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HEXDC MUTATED 0 0 2 1 0
HEXDC WILD-TYPE 17 34 88 68 1
'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.27

Table S1585.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GATA3 MUTATED 2 1 13
GATA3 WILD-TYPE 78 54 139
'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S1586.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GATA3 MUTATED 9 2 2
GATA3 WILD-TYPE 112 35 84
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1587.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GATA3 MUTATED 10 0 4
GATA3 WILD-TYPE 154 13 76
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.25

Table S1588.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GATA3 MUTATED 0 10 0 4
GATA3 WILD-TYPE 49 92 4 98
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S1589.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GATA3 MUTATED 0 13 3
GATA3 WILD-TYPE 26 166 81
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.5

Table S1590.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GATA3 MUTATED 1 5 8 0 2
GATA3 WILD-TYPE 68 53 104 1 47
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.63

Table S1591.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GATA3 MUTATED 1 8 4
GATA3 WILD-TYPE 17 90 91
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 0.92

Table S1592.  Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GATA3 MUTATED 0 2 7 4 0
GATA3 WILD-TYPE 17 32 83 65 1
'GPR82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S1593.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPR82 MUTATED 1 1 7
GPR82 WILD-TYPE 79 54 145
'GPR82 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.17

Table S1594.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPR82 MUTATED 8 1 0
GPR82 WILD-TYPE 113 36 86

Figure S542.  Get High-res Image Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1595.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPR82 MUTATED 8 0 0
GPR82 WILD-TYPE 156 13 80
'GPR82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00721 (Fisher's exact test), Q value = 0.085

Table S1596.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPR82 MUTATED 0 8 0 0
GPR82 WILD-TYPE 49 94 4 102

Figure S543.  Get High-res Image Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S1597.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPR82 MUTATED 1 7 1
GPR82 WILD-TYPE 25 172 83
'GPR82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S1598.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPR82 MUTATED 1 4 4 0 0
GPR82 WILD-TYPE 68 54 108 1 49
'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S1599.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPR82 MUTATED 1 4 2
GPR82 WILD-TYPE 17 94 93
'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.73

Table S1600.  Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPR82 MUTATED 0 1 5 1 0
GPR82 WILD-TYPE 17 33 85 68 1
'ELF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.27

Table S1601.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ELF3 MUTATED 1 0 9
ELF3 WILD-TYPE 79 55 143
'ELF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S1602.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ELF3 MUTATED 6 0 2
ELF3 WILD-TYPE 115 37 84
'ELF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S1603.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ELF3 MUTATED 7 1 2
ELF3 WILD-TYPE 157 12 78
'ELF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.23

Table S1604.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ELF3 MUTATED 0 6 1 3
ELF3 WILD-TYPE 49 96 3 99
'ELF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S1605.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ELF3 MUTATED 0 10 1
ELF3 WILD-TYPE 26 169 83
'ELF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.025

Table S1606.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ELF3 MUTATED 0 8 3 0 0
ELF3 WILD-TYPE 69 50 109 1 49

Figure S544.  Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S1607.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ELF3 MUTATED 0 6 2
ELF3 WILD-TYPE 18 92 93
'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.3

Table S1608.  Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ELF3 MUTATED 0 2 6 0 0
ELF3 WILD-TYPE 17 32 84 69 1
'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.12

Table S1609.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EPHX1 MUTATED 0 0 9
EPHX1 WILD-TYPE 80 55 143

Figure S545.  Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.56

Table S1610.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EPHX1 MUTATED 5 0 1
EPHX1 WILD-TYPE 116 37 85
'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.28

Table S1611.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EPHX1 MUTATED 6 1 0
EPHX1 WILD-TYPE 158 12 80
'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S1612.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EPHX1 MUTATED 0 6 0 1
EPHX1 WILD-TYPE 49 96 4 101
'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.27

Table S1613.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EPHX1 MUTATED 0 9 0
EPHX1 WILD-TYPE 26 170 84
'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00162 (Fisher's exact test), Q value = 0.035

Table S1614.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EPHX1 MUTATED 0 7 2 0 0
EPHX1 WILD-TYPE 69 51 110 1 49

Figure S546.  Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.2

Table S1615.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EPHX1 MUTATED 0 6 0
EPHX1 WILD-TYPE 18 92 95

Figure S547.  Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S1616.  Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EPHX1 MUTATED 0 3 3 0 0
EPHX1 WILD-TYPE 17 31 87 69 1
'CNBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S1617.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CNBD1 MUTATED 6 3 4
CNBD1 WILD-TYPE 74 52 148
'CNBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.084

Table S1618.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CNBD1 MUTATED 6 4 0
CNBD1 WILD-TYPE 115 33 86

Figure S548.  Get High-res Image Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S1619.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CNBD1 MUTATED 10 1 1
CNBD1 WILD-TYPE 154 12 79
'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S1620.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CNBD1 MUTATED 4 5 0 3
CNBD1 WILD-TYPE 45 97 4 99
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S1621.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CNBD1 MUTATED 3 8 2
CNBD1 WILD-TYPE 23 171 82
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S1622.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CNBD1 MUTATED 5 4 4 0 0
CNBD1 WILD-TYPE 64 54 108 1 49
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.19

Table S1623.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CNBD1 MUTATED 3 4 2
CNBD1 WILD-TYPE 15 94 93

Figure S549.  Get High-res Image Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S1624.  Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CNBD1 MUTATED 0 3 5 1 0
CNBD1 WILD-TYPE 17 31 85 68 1
'SLC26A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.18

Table S1625.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC26A7 MUTATED 0 3 10
SLC26A7 WILD-TYPE 80 52 142

Figure S550.  Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC26A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S1626.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC26A7 MUTATED 9 1 2
SLC26A7 WILD-TYPE 112 36 84
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S1627.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC26A7 MUTATED 11 0 1
SLC26A7 WILD-TYPE 153 13 79
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S1628.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC26A7 MUTATED 0 10 0 2
SLC26A7 WILD-TYPE 49 92 4 100

Figure S551.  Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00638 (Fisher's exact test), Q value = 0.079

Table S1629.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC26A7 MUTATED 0 14 0
SLC26A7 WILD-TYPE 26 165 84

Figure S552.  Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0836 (Fisher's exact test), Q value = 0.27

Table S1630.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC26A7 MUTATED 1 5 8 0 0
SLC26A7 WILD-TYPE 68 53 104 1 49
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.022

Table S1631.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC26A7 MUTATED 0 11 0
SLC26A7 WILD-TYPE 18 87 95

Figure S553.  Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S1632.  Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC26A7 MUTATED 0 5 6 0 0
SLC26A7 WILD-TYPE 17 29 84 69 1

Figure S554.  Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.072

Table S1633.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RCOR3 MUTATED 0 0 11
RCOR3 WILD-TYPE 80 55 141

Figure S555.  Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RCOR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.18

Table S1634.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RCOR3 MUTATED 9 0 1
RCOR3 WILD-TYPE 112 37 85

Figure S556.  Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.68

Table S1635.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RCOR3 MUTATED 7 0 1
RCOR3 WILD-TYPE 157 13 79
'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0774 (Fisher's exact test), Q value = 0.26

Table S1636.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RCOR3 MUTATED 0 7 0 1
RCOR3 WILD-TYPE 49 95 4 101
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S1637.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RCOR3 MUTATED 0 10 2
RCOR3 WILD-TYPE 26 169 82
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.2

Table S1638.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RCOR3 MUTATED 0 6 5 0 1
RCOR3 WILD-TYPE 69 52 107 1 48

Figure S557.  Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S1639.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RCOR3 MUTATED 1 7 2
RCOR3 WILD-TYPE 17 91 93
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S1640.  Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RCOR3 MUTATED 0 3 5 2 0
RCOR3 WILD-TYPE 17 31 85 67 1
'CASC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S1641.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CASC3 MUTATED 1 1 6
CASC3 WILD-TYPE 79 54 146
'CASC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 0.96

Table S1642.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CASC3 MUTATED 5 1 2
CASC3 WILD-TYPE 116 36 84
'CASC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1643.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CASC3 MUTATED 5 0 2
CASC3 WILD-TYPE 159 13 78
'CASC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1644.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CASC3 MUTATED 1 3 0 3
CASC3 WILD-TYPE 48 99 4 99
'CASC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.85

Table S1645.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CASC3 MUTATED 1 5 2
CASC3 WILD-TYPE 25 174 82
'CASC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1646.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CASC3 MUTATED 2 1 4 0 1
CASC3 WILD-TYPE 67 57 108 1 48
'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S1647.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CASC3 MUTATED 1 5 2
CASC3 WILD-TYPE 17 93 93
'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1648.  Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CASC3 MUTATED 0 1 4 3 0
CASC3 WILD-TYPE 17 33 86 66 1
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.072

Table S1649.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ACVR1B MUTATED 0 0 11
ACVR1B WILD-TYPE 80 55 141

Figure S558.  Get High-res Image Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S1650.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ACVR1B MUTATED 7 0 1
ACVR1B WILD-TYPE 114 37 85
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.28

Table S1651.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ACVR1B MUTATED 7 1 0
ACVR1B WILD-TYPE 157 12 80
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.013

Table S1652.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ACVR1B MUTATED 0 6 2 0
ACVR1B WILD-TYPE 49 96 2 102

Figure S559.  Get High-res Image Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 0.97

Table S1653.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ACVR1B MUTATED 0 8 3
ACVR1B WILD-TYPE 26 171 81
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.1

Table S1654.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ACVR1B MUTATED 0 7 3 0 1
ACVR1B WILD-TYPE 69 51 109 1 48

Figure S560.  Get High-res Image Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S1655.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ACVR1B MUTATED 0 6 2
ACVR1B WILD-TYPE 18 92 93
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S1656.  Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ACVR1B MUTATED 0 2 5 1 0
ACVR1B WILD-TYPE 17 32 85 68 1
'VPS13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.029

Table S1657.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
VPS13A MUTATED 2 4 26
VPS13A WILD-TYPE 78 51 126

Figure S561.  Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.23

Table S1658.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
VPS13A MUTATED 18 1 6
VPS13A WILD-TYPE 103 36 80
'VPS13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S1659.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
VPS13A MUTATED 20 2 6
VPS13A WILD-TYPE 144 11 74
'VPS13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.39

Table S1660.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
VPS13A MUTATED 2 16 0 10
VPS13A WILD-TYPE 47 86 4 92
'VPS13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1661.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
VPS13A MUTATED 2 25 5
VPS13A WILD-TYPE 24 154 79
'VPS13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.019

Table S1662.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
VPS13A MUTATED 5 14 11 1 1
VPS13A WILD-TYPE 64 44 101 0 48

Figure S562.  Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S1663.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
VPS13A MUTATED 3 14 4
VPS13A WILD-TYPE 15 84 91

Figure S563.  Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 0.28

Table S1664.  Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
VPS13A MUTATED 0 4 11 5 1
VPS13A WILD-TYPE 17 30 79 64 0
'PLA2G1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.67

Table S1665.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLA2G1B MUTATED 0 1 3
PLA2G1B WILD-TYPE 80 54 149
'PLA2G1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.55

Table S1666.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLA2G1B MUTATED 1 0 3
PLA2G1B WILD-TYPE 120 37 83
'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S1667.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLA2G1B MUTATED 2 0 2
PLA2G1B WILD-TYPE 162 13 78
'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1668.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLA2G1B MUTATED 0 2 0 2
PLA2G1B WILD-TYPE 49 100 4 100
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1669.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLA2G1B MUTATED 0 3 1
PLA2G1B WILD-TYPE 26 176 83
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1670.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLA2G1B MUTATED 1 1 2 0 0
PLA2G1B WILD-TYPE 68 57 110 1 49
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S1671.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLA2G1B MUTATED 0 1 2
PLA2G1B WILD-TYPE 18 97 93
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S1672.  Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLA2G1B MUTATED 0 0 1 2 0
PLA2G1B WILD-TYPE 17 34 89 67 1
'ZCCHC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.038

Table S1673.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZCCHC6 MUTATED 0 0 13
ZCCHC6 WILD-TYPE 80 55 139

Figure S564.  Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.7

Table S1674.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZCCHC6 MUTATED 7 1 2
ZCCHC6 WILD-TYPE 114 36 84
'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.84

Table S1675.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZCCHC6 MUTATED 9 0 2
ZCCHC6 WILD-TYPE 155 13 78
'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S1676.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZCCHC6 MUTATED 0 8 0 3
ZCCHC6 WILD-TYPE 49 94 4 99
'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S1677.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZCCHC6 MUTATED 0 13 0
ZCCHC6 WILD-TYPE 26 166 84

Figure S565.  Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.079

Table S1678.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZCCHC6 MUTATED 0 7 6 0 0
ZCCHC6 WILD-TYPE 69 51 106 1 49

Figure S566.  Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.27

Table S1679.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZCCHC6 MUTATED 1 7 1
ZCCHC6 WILD-TYPE 17 91 94
'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0954 (Fisher's exact test), Q value = 0.28

Table S1680.  Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZCCHC6 MUTATED 0 2 7 0 0
ZCCHC6 WILD-TYPE 17 32 83 69 1
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S1681.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ITPR2 MUTATED 2 3 20
ITPR2 WILD-TYPE 78 52 132

Figure S567.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S1682.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ITPR2 MUTATED 13 2 3
ITPR2 WILD-TYPE 108 35 83
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.19

Table S1683.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ITPR2 MUTATED 19 1 2
ITPR2 WILD-TYPE 145 12 78

Figure S568.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00526 (Fisher's exact test), Q value = 0.071

Table S1684.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ITPR2 MUTATED 0 16 0 6
ITPR2 WILD-TYPE 49 86 4 96

Figure S569.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00363 (Fisher's exact test), Q value = 0.057

Table S1685.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ITPR2 MUTATED 0 23 2
ITPR2 WILD-TYPE 26 156 82

Figure S570.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00735 (Fisher's exact test), Q value = 0.085

Table S1686.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ITPR2 MUTATED 2 11 11 0 1
ITPR2 WILD-TYPE 67 47 101 1 48

Figure S571.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.13

Table S1687.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ITPR2 MUTATED 1 12 2
ITPR2 WILD-TYPE 17 86 93

Figure S572.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S1688.  Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ITPR2 MUTATED 0 6 8 1 0
ITPR2 WILD-TYPE 17 28 82 68 1

Figure S573.  Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S1689.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MLL3 MUTATED 3 4 38
MLL3 WILD-TYPE 77 51 114

Figure S574.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.021

Table S1690.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MLL3 MUTATED 26 2 4
MLL3 WILD-TYPE 95 35 82

Figure S575.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.23

Table S1691.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MLL3 MUTATED 33 0 9
MLL3 WILD-TYPE 131 13 71
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S1692.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MLL3 MUTATED 2 30 0 10
MLL3 WILD-TYPE 47 72 4 92

Figure S576.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00215 (Fisher's exact test), Q value = 0.042

Table S1693.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MLL3 MUTATED 2 38 5
MLL3 WILD-TYPE 24 141 79

Figure S577.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0081

Table S1694.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MLL3 MUTATED 3 18 21 0 3
MLL3 WILD-TYPE 66 40 91 1 46

Figure S578.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.039

Table S1695.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MLL3 MUTATED 2 20 4
MLL3 WILD-TYPE 16 78 91

Figure S579.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.1

Table S1696.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MLL3 MUTATED 1 6 17 2 0
MLL3 WILD-TYPE 16 28 73 67 1

Figure S580.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S1697.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDK12 MUTATED 2 3 13
CDK12 WILD-TYPE 78 52 139
'CDK12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S1698.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDK12 MUTATED 10 1 5
CDK12 WILD-TYPE 111 36 81
'CDK12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S1699.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDK12 MUTATED 10 2 3
CDK12 WILD-TYPE 154 11 77
'CDK12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S1700.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDK12 MUTATED 2 7 0 6
CDK12 WILD-TYPE 47 95 4 96
'CDK12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.27

Table S1701.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDK12 MUTATED 3 14 2
CDK12 WILD-TYPE 23 165 82
'CDK12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S1702.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDK12 MUTATED 2 7 9 0 1
CDK12 WILD-TYPE 67 51 103 1 48
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S1703.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDK12 MUTATED 2 9 3
CDK12 WILD-TYPE 16 89 92
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S1704.  Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDK12 MUTATED 1 2 9 2 0
CDK12 WILD-TYPE 16 32 81 67 1
'PODN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.15

Table S1705.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PODN MUTATED 1 0 11
PODN WILD-TYPE 79 55 141

Figure S581.  Get High-res Image Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PODN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S1706.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PODN MUTATED 7 1 2
PODN WILD-TYPE 114 36 84
'PODN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.95

Table S1707.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PODN MUTATED 9 0 3
PODN WILD-TYPE 155 13 77
'PODN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S1708.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PODN MUTATED 1 8 0 3
PODN WILD-TYPE 48 94 4 99
'PODN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.71

Table S1709.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PODN MUTATED 0 10 3
PODN WILD-TYPE 26 169 81
'PODN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S1710.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PODN MUTATED 1 4 8 0 0
PODN WILD-TYPE 68 54 104 1 49
'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.58

Table S1711.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PODN MUTATED 0 7 3
PODN WILD-TYPE 18 91 92
'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.79

Table S1712.  Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PODN MUTATED 0 2 6 2 0
PODN WILD-TYPE 17 32 84 67 1
'AKNAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S1713.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AKNAD1 MUTATED 3 2 12
AKNAD1 WILD-TYPE 77 53 140
'AKNAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.29

Table S1714.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AKNAD1 MUTATED 11 1 2
AKNAD1 WILD-TYPE 110 36 84
'AKNAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.19

Table S1715.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AKNAD1 MUTATED 15 1 1
AKNAD1 WILD-TYPE 149 12 79

Figure S582.  Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'AKNAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S1716.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AKNAD1 MUTATED 2 11 0 4
AKNAD1 WILD-TYPE 47 91 4 98
'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.18

Table S1717.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AKNAD1 MUTATED 1 16 1
AKNAD1 WILD-TYPE 25 163 83

Figure S583.  Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S1718.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AKNAD1 MUTATED 2 8 8 0 0
AKNAD1 WILD-TYPE 67 50 104 1 49

Figure S584.  Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.24

Table S1719.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AKNAD1 MUTATED 2 8 2
AKNAD1 WILD-TYPE 16 90 93
'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 0.21

Table S1720.  Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AKNAD1 MUTATED 1 3 8 0 0
AKNAD1 WILD-TYPE 16 31 82 69 1
'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 0.084

Table S1721.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ERBB3 MUTATED 2 6 23
ERBB3 WILD-TYPE 78 49 129

Figure S585.  Get High-res Image Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S1722.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ERBB3 MUTATED 14 2 7
ERBB3 WILD-TYPE 107 35 79
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.76

Table S1723.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ERBB3 MUTATED 18 0 9
ERBB3 WILD-TYPE 146 13 71
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.45

Table S1724.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ERBB3 MUTATED 2 15 0 10
ERBB3 WILD-TYPE 47 87 4 92
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1725.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ERBB3 MUTATED 1 23 7
ERBB3 WILD-TYPE 25 156 77
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S1726.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ERBB3 MUTATED 4 9 15 0 3
ERBB3 WILD-TYPE 65 49 97 1 46
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S1727.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ERBB3 MUTATED 0 14 7
ERBB3 WILD-TYPE 18 84 88
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S1728.  Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ERBB3 MUTATED 0 3 13 5 0
ERBB3 WILD-TYPE 17 31 77 64 1
'RSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S1729.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RSF1 MUTATED 3 2 12
RSF1 WILD-TYPE 77 53 140
'RSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00991 (Fisher's exact test), Q value = 0.1

Table S1730.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RSF1 MUTATED 10 2 0
RSF1 WILD-TYPE 111 35 86

Figure S586.  Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S1731.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RSF1 MUTATED 14 0 2
RSF1 WILD-TYPE 150 13 78
'RSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.18

Table S1732.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RSF1 MUTATED 2 12 0 2
RSF1 WILD-TYPE 47 90 4 100

Figure S587.  Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S1733.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RSF1 MUTATED 0 14 3
RSF1 WILD-TYPE 26 165 81
'RSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00523 (Fisher's exact test), Q value = 0.071

Table S1734.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RSF1 MUTATED 2 10 3 0 2
RSF1 WILD-TYPE 67 48 109 1 47

Figure S588.  Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.23

Table S1735.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RSF1 MUTATED 1 8 1
RSF1 WILD-TYPE 17 90 94
'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 0.19

Table S1736.  Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RSF1 MUTATED 0 4 6 0 0
RSF1 WILD-TYPE 17 30 84 69 1

Figure S589.  Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KBTBD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.95

Table S1737.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KBTBD10 MUTATED 1 1 5
KBTBD10 WILD-TYPE 79 54 147
'KBTBD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S1738.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KBTBD10 MUTATED 5 1 0
KBTBD10 WILD-TYPE 116 36 86
'KBTBD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.28

Table S1739.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KBTBD10 MUTATED 6 1 0
KBTBD10 WILD-TYPE 158 12 80
'KBTBD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.21

Table S1740.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KBTBD10 MUTATED 1 6 0 0
KBTBD10 WILD-TYPE 48 96 4 102

Figure S590.  Get High-res Image Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S1741.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KBTBD10 MUTATED 1 6 0
KBTBD10 WILD-TYPE 25 173 84
'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1742.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KBTBD10 MUTATED 1 4 2 0 0
KBTBD10 WILD-TYPE 68 54 110 1 49
'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.26

Table S1743.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KBTBD10 MUTATED 1 4 0
KBTBD10 WILD-TYPE 17 94 95
'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S1744.  Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KBTBD10 MUTATED 1 2 2 0 0
KBTBD10 WILD-TYPE 16 32 88 69 1
'OSBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00588 (Fisher's exact test), Q value = 0.075

Table S1745.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OSBP2 MUTATED 0 0 11
OSBP2 WILD-TYPE 80 55 141

Figure S591.  Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OSBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.17

Table S1746.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OSBP2 MUTATED 8 1 0
OSBP2 WILD-TYPE 113 36 86

Figure S592.  Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S1747.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OSBP2 MUTATED 9 0 1
OSBP2 WILD-TYPE 155 13 79
'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S1748.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OSBP2 MUTATED 0 9 0 1
OSBP2 WILD-TYPE 49 93 4 101

Figure S593.  Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S1749.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OSBP2 MUTATED 0 11 0
OSBP2 WILD-TYPE 26 168 84

Figure S594.  Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S1750.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OSBP2 MUTATED 1 7 3 0 0
OSBP2 WILD-TYPE 68 51 109 1 49

Figure S595.  Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S1751.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OSBP2 MUTATED 0 7 2
OSBP2 WILD-TYPE 18 91 93
'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0489 (Fisher's exact test), Q value = 0.21

Table S1752.  Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OSBP2 MUTATED 0 4 5 0 0
OSBP2 WILD-TYPE 17 30 85 69 1

Figure S596.  Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S1753.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EBF3 MUTATED 1 0 11
EBF3 WILD-TYPE 79 55 141

Figure S597.  Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EBF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S1754.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EBF3 MUTATED 11 0 1
EBF3 WILD-TYPE 110 37 85

Figure S598.  Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EBF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S1755.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EBF3 MUTATED 8 0 2
EBF3 WILD-TYPE 156 13 78
'EBF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.26

Table S1756.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EBF3 MUTATED 0 8 0 2
EBF3 WILD-TYPE 49 94 4 100
'EBF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S1757.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EBF3 MUTATED 0 10 2
EBF3 WILD-TYPE 26 169 82
'EBF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 0.21

Table S1758.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EBF3 MUTATED 0 6 4 0 2
EBF3 WILD-TYPE 69 52 108 1 47

Figure S599.  Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.22

Table S1759.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EBF3 MUTATED 1 8 1
EBF3 WILD-TYPE 17 90 94
'EBF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S1760.  Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EBF3 MUTATED 0 3 6 1 0
EBF3 WILD-TYPE 17 31 84 68 1
'LRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0072

Table S1761.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LRP1 MUTATED 1 3 26
LRP1 WILD-TYPE 79 52 126

Figure S600.  Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.24

Table S1762.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LRP1 MUTATED 17 2 4
LRP1 WILD-TYPE 104 35 82
'LRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S1763.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LRP1 MUTATED 19 1 5
LRP1 WILD-TYPE 145 12 75
'LRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00732 (Fisher's exact test), Q value = 0.085

Table S1764.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LRP1 MUTATED 1 18 0 6
LRP1 WILD-TYPE 48 84 4 96

Figure S601.  Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S1765.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LRP1 MUTATED 1 26 3
LRP1 WILD-TYPE 25 153 81

Figure S602.  Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0046

Table S1766.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LRP1 MUTATED 2 14 14 0 0
LRP1 WILD-TYPE 67 44 98 1 49

Figure S603.  Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.013

Table S1767.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LRP1 MUTATED 0 18 2
LRP1 WILD-TYPE 18 80 93

Figure S604.  Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.2

Table S1768.  Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LRP1 MUTATED 1 7 10 2 0
LRP1 WILD-TYPE 16 27 80 67 1

Figure S605.  Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.4

Table S1769.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PHKB MUTATED 0 2 5
PHKB WILD-TYPE 80 53 147
'PHKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.22

Table S1770.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PHKB MUTATED 6 0 0
PHKB WILD-TYPE 115 37 86
'PHKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S1771.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PHKB MUTATED 6 0 1
PHKB WILD-TYPE 158 13 79
'PHKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S1772.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PHKB MUTATED 0 6 0 1
PHKB WILD-TYPE 49 96 4 101
'PHKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S1773.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PHKB MUTATED 0 6 1
PHKB WILD-TYPE 26 173 83
'PHKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S1774.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PHKB MUTATED 0 4 2 0 1
PHKB WILD-TYPE 69 54 110 1 48
'PHKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S1775.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PHKB MUTATED 1 4 1
PHKB WILD-TYPE 17 94 94
'PHKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.9

Table S1776.  Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PHKB MUTATED 0 1 4 1 0
PHKB WILD-TYPE 17 33 86 68 1
'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.17

Table S1777.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ABCB6 MUTATED 0 0 8
ABCB6 WILD-TYPE 80 55 144

Figure S606.  Get High-res Image Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S1778.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ABCB6 MUTATED 5 0 1
ABCB6 WILD-TYPE 116 37 85
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.7

Table S1779.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ABCB6 MUTATED 3 0 3
ABCB6 WILD-TYPE 161 13 77
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.8

Table S1780.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ABCB6 MUTATED 0 3 0 3
ABCB6 WILD-TYPE 49 99 4 99
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.28

Table S1781.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ABCB6 MUTATED 0 8 0
ABCB6 WILD-TYPE 26 171 84
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.25

Table S1782.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ABCB6 MUTATED 1 5 2 0 0
ABCB6 WILD-TYPE 68 53 110 1 49
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.2

Table S1783.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ABCB6 MUTATED 0 6 0
ABCB6 WILD-TYPE 18 92 95

Figure S607.  Get High-res Image Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S1784.  Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ABCB6 MUTATED 0 2 4 0 0
ABCB6 WILD-TYPE 17 32 86 69 1
'DNAJC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00149 (Fisher's exact test), Q value = 0.034

Table S1785.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DNAJC18 MUTATED 0 0 13
DNAJC18 WILD-TYPE 80 55 139

Figure S608.  Get High-res Image Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.18

Table S1786.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DNAJC18 MUTATED 9 0 1
DNAJC18 WILD-TYPE 112 37 85

Figure S609.  Get High-res Image Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.95

Table S1787.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DNAJC18 MUTATED 9 0 3
DNAJC18 WILD-TYPE 155 13 77
'DNAJC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S1788.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DNAJC18 MUTATED 0 8 0 4
DNAJC18 WILD-TYPE 49 94 4 98
'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S1789.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DNAJC18 MUTATED 0 11 2
DNAJC18 WILD-TYPE 26 168 82
'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S1790.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DNAJC18 MUTATED 2 2 8 0 1
DNAJC18 WILD-TYPE 67 56 104 1 48
'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S1791.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DNAJC18 MUTATED 0 7 2
DNAJC18 WILD-TYPE 18 91 93
'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S1792.  Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DNAJC18 MUTATED 0 2 6 1 0
DNAJC18 WILD-TYPE 17 32 84 68 1
'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S1793.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IDH2 MUTATED 0 0 4
IDH2 WILD-TYPE 80 55 148
'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S1794.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IDH2 MUTATED 3 0 1
IDH2 WILD-TYPE 118 37 85
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S1795.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IDH2 MUTATED 2 2 0
IDH2 WILD-TYPE 162 11 80

Figure S610.  Get High-res Image Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 0.93

Table S1796.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IDH2 MUTATED 1 2 0 1
IDH2 WILD-TYPE 48 100 4 101
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.47

Table S1797.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IDH2 MUTATED 1 3 0
IDH2 WILD-TYPE 25 176 84
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0036 (Fisher's exact test), Q value = 0.057

Table S1798.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IDH2 MUTATED 0 2 1 1 0
IDH2 WILD-TYPE 69 56 111 0 49

Figure S611.  Get High-res Image Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S1799.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IDH2 MUTATED 1 2 0
IDH2 WILD-TYPE 17 96 95
'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00804 (Fisher's exact test), Q value = 0.088

Table S1800.  Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IDH2 MUTATED 0 1 1 0 1
IDH2 WILD-TYPE 17 33 89 69 0

Figure S612.  Get High-res Image Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.52

Table S1801.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DLGAP3 MUTATED 2 4 10
DLGAP3 WILD-TYPE 78 51 142
'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S1802.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DLGAP3 MUTATED 13 0 2
DLGAP3 WILD-TYPE 108 37 84

Figure S613.  Get High-res Image Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S1803.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DLGAP3 MUTATED 11 1 3
DLGAP3 WILD-TYPE 153 12 77
'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 0.28

Table S1804.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DLGAP3 MUTATED 2 9 1 3
DLGAP3 WILD-TYPE 47 93 3 99
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.49

Table S1805.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DLGAP3 MUTATED 1 13 2
DLGAP3 WILD-TYPE 25 166 82
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.27

Table S1806.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DLGAP3 MUTATED 1 7 7 0 1
DLGAP3 WILD-TYPE 68 51 105 1 48
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.16

Table S1807.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DLGAP3 MUTATED 1 11 2
DLGAP3 WILD-TYPE 17 87 93

Figure S614.  Get High-res Image Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S1808.  Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DLGAP3 MUTATED 1 3 8 2 0
DLGAP3 WILD-TYPE 16 31 82 67 1
'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S1809.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0240 MUTATED 1 0 11
KIAA0240 WILD-TYPE 79 55 141

Figure S615.  Get High-res Image Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1810.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0240 MUTATED 5 1 3
KIAA0240 WILD-TYPE 116 36 83
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.39

Table S1811.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0240 MUTATED 9 1 1
KIAA0240 WILD-TYPE 155 12 79
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.19

Table S1812.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0240 MUTATED 0 9 0 2
KIAA0240 WILD-TYPE 49 93 4 100

Figure S616.  Get High-res Image Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.78

Table S1813.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0240 MUTATED 1 9 2
KIAA0240 WILD-TYPE 25 170 82
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.78

Table S1814.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0240 MUTATED 2 4 5 0 1
KIAA0240 WILD-TYPE 67 54 107 1 48
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.95

Table S1815.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0240 MUTATED 0 5 3
KIAA0240 WILD-TYPE 18 93 92
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.85

Table S1816.  Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0240 MUTATED 0 2 4 2 0
KIAA0240 WILD-TYPE 17 32 86 67 1
'ATXN2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.27

Table S1817.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATXN2L MUTATED 2 1 13
ATXN2L WILD-TYPE 78 54 139
'ATXN2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.18

Table S1818.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATXN2L MUTATED 11 0 2
ATXN2L WILD-TYPE 110 37 84

Figure S617.  Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S1819.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATXN2L MUTATED 13 0 3
ATXN2L WILD-TYPE 151 13 77
'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.078

Table S1820.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATXN2L MUTATED 0 13 0 3
ATXN2L WILD-TYPE 49 89 4 99

Figure S618.  Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.26

Table S1821.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATXN2L MUTATED 0 15 2
ATXN2L WILD-TYPE 26 164 82
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S1822.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATXN2L MUTATED 1 12 3 0 1
ATXN2L WILD-TYPE 68 46 109 1 48

Figure S619.  Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S1823.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATXN2L MUTATED 0 9 3
ATXN2L WILD-TYPE 18 89 92
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.59

Table S1824.  Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATXN2L MUTATED 0 3 7 2 0
ATXN2L WILD-TYPE 17 31 83 67 1
'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.022

Table S1825.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF608 MUTATED 0 0 14
ZNF608 WILD-TYPE 80 55 138

Figure S620.  Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00699 (Fisher's exact test), Q value = 0.083

Table S1826.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF608 MUTATED 9 0 0
ZNF608 WILD-TYPE 112 37 86

Figure S621.  Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1827.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF608 MUTATED 8 0 4
ZNF608 WILD-TYPE 156 13 76
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S1828.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF608 MUTATED 0 8 0 4
ZNF608 WILD-TYPE 49 94 4 98
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.19

Table S1829.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF608 MUTATED 0 14 1
ZNF608 WILD-TYPE 26 165 83

Figure S622.  Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.021

Table S1830.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF608 MUTATED 1 10 4 0 0
ZNF608 WILD-TYPE 68 48 108 1 49

Figure S623.  Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.1

Table S1831.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF608 MUTATED 1 8 0
ZNF608 WILD-TYPE 17 90 95

Figure S624.  Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.27

Table S1832.  Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF608 MUTATED 0 3 6 0 0
ZNF608 WILD-TYPE 17 31 84 69 1
'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S1833.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0406 MUTATED 0 2 10
KIAA0406 WILD-TYPE 80 53 142

Figure S625.  Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.17

Table S1834.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0406 MUTATED 8 1 0
KIAA0406 WILD-TYPE 113 36 86

Figure S626.  Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.84

Table S1835.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0406 MUTATED 9 0 2
KIAA0406 WILD-TYPE 155 13 78
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S1836.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0406 MUTATED 2 7 0 2
KIAA0406 WILD-TYPE 47 95 4 100
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S1837.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0406 MUTATED 1 9 2
KIAA0406 WILD-TYPE 25 170 82
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.12

Table S1838.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0406 MUTATED 0 6 6 0 0
KIAA0406 WILD-TYPE 69 52 106 1 49

Figure S627.  Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00978 (Fisher's exact test), Q value = 0.1

Table S1839.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0406 MUTATED 2 6 0
KIAA0406 WILD-TYPE 16 92 95

Figure S628.  Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S1840.  Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0406 MUTATED 0 3 5 0 0
KIAA0406 WILD-TYPE 17 31 85 69 1
'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.006

Table S1841.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1967 MUTATED 0 0 17
KIAA1967 WILD-TYPE 80 55 135

Figure S629.  Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.03

Table S1842.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1967 MUTATED 12 0 0
KIAA1967 WILD-TYPE 109 37 86

Figure S630.  Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S1843.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1967 MUTATED 13 0 2
KIAA1967 WILD-TYPE 151 13 78
'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0032 (Fisher's exact test), Q value = 0.054

Table S1844.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1967 MUTATED 0 13 0 2
KIAA1967 WILD-TYPE 49 89 4 100

Figure S631.  Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S1845.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1967 MUTATED 0 16 1
KIAA1967 WILD-TYPE 26 163 83

Figure S632.  Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.013

Table S1846.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1967 MUTATED 0 11 5 0 1
KIAA1967 WILD-TYPE 69 47 107 1 48

Figure S633.  Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S1847.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1967 MUTATED 0 8 2
KIAA1967 WILD-TYPE 18 90 93
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S1848.  Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1967 MUTATED 0 3 6 1 0
KIAA1967 WILD-TYPE 17 31 84 68 1
'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S1849.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CBLL1 MUTATED 1 0 5
CBLL1 WILD-TYPE 79 55 147
'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.42

Table S1850.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CBLL1 MUTATED 4 0 0
CBLL1 WILD-TYPE 117 37 86
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S1851.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CBLL1 MUTATED 3 0 3
CBLL1 WILD-TYPE 161 13 77
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S1852.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CBLL1 MUTATED 0 3 0 3
CBLL1 WILD-TYPE 49 99 4 99
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S1853.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CBLL1 MUTATED 0 3 3
CBLL1 WILD-TYPE 26 176 81
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 0.97

Table S1854.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CBLL1 MUTATED 1 2 2 0 1
CBLL1 WILD-TYPE 68 56 110 1 48
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1855.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CBLL1 MUTATED 0 2 1
CBLL1 WILD-TYPE 18 96 94
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S1856.  Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CBLL1 MUTATED 0 1 1 1 0
CBLL1 WILD-TYPE 17 33 89 68 1
'TENC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.41

Table S1857.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TENC1 MUTATED 1 1 9
TENC1 WILD-TYPE 79 54 143
'TENC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S1858.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TENC1 MUTATED 6 2 2
TENC1 WILD-TYPE 115 35 84
'TENC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 0.93

Table S1859.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TENC1 MUTATED 6 0 4
TENC1 WILD-TYPE 158 13 76
'TENC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1860.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TENC1 MUTATED 1 4 0 5
TENC1 WILD-TYPE 48 98 4 97
'TENC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S1861.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TENC1 MUTATED 0 10 1
TENC1 WILD-TYPE 26 169 83
'TENC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S1862.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TENC1 MUTATED 3 4 4 0 0
TENC1 WILD-TYPE 66 54 108 1 49
'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S1863.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TENC1 MUTATED 0 6 2
TENC1 WILD-TYPE 18 92 93
'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S1864.  Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TENC1 MUTATED 0 1 6 1 0
TENC1 WILD-TYPE 17 33 84 68 1
'C1QA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1865.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C1QA MUTATED 0 0 5
C1QA WILD-TYPE 80 55 147
'C1QA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.63

Table S1866.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C1QA MUTATED 4 0 1
C1QA WILD-TYPE 117 37 85
'C1QA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S1867.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C1QA MUTATED 3 1 0
C1QA WILD-TYPE 161 12 80
'C1QA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S1868.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C1QA MUTATED 0 3 0 1
C1QA WILD-TYPE 49 99 4 101
'C1QA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1869.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C1QA MUTATED 0 4 1
C1QA WILD-TYPE 26 175 83
'C1QA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S1870.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C1QA MUTATED 0 2 3 0 0
C1QA WILD-TYPE 69 56 109 1 49
'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.64

Table S1871.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C1QA MUTATED 0 4 1
C1QA WILD-TYPE 18 94 94
'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.64

Table S1872.  Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C1QA MUTATED 0 2 2 1 0
C1QA WILD-TYPE 17 32 88 68 1
'PLAU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.23

Table S1873.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLAU MUTATED 0 0 7
PLAU WILD-TYPE 80 55 145
'PLAU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.91

Table S1874.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLAU MUTATED 3 0 1
PLAU WILD-TYPE 118 37 85
'PLAU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S1875.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLAU MUTATED 4 1 2
PLAU WILD-TYPE 160 12 78
'PLAU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.72

Table S1876.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLAU MUTATED 0 4 0 3
PLAU WILD-TYPE 49 98 4 99
'PLAU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S1877.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLAU MUTATED 0 7 0
PLAU WILD-TYPE 26 172 84
'PLAU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.17

Table S1878.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLAU MUTATED 0 5 2 0 0
PLAU WILD-TYPE 69 53 110 1 49

Figure S634.  Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S1879.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLAU MUTATED 0 4 0
PLAU WILD-TYPE 18 94 95
'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S1880.  Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLAU MUTATED 0 2 2 0 0
PLAU WILD-TYPE 17 32 88 69 1
'ALG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.16

Table S1881.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ALG10 MUTATED 0 1 10
ALG10 WILD-TYPE 80 54 142

Figure S635.  Get High-res Image Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALG10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.27

Table S1882.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ALG10 MUTATED 8 0 1
ALG10 WILD-TYPE 113 37 85
'ALG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1883.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ALG10 MUTATED 7 0 3
ALG10 WILD-TYPE 157 13 77
'ALG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.73

Table S1884.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ALG10 MUTATED 1 6 0 3
ALG10 WILD-TYPE 48 96 4 99
'ALG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S1885.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ALG10 MUTATED 0 9 2
ALG10 WILD-TYPE 26 170 82
'ALG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S1886.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ALG10 MUTATED 1 5 4 0 1
ALG10 WILD-TYPE 68 53 108 1 48
'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S1887.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ALG10 MUTATED 0 5 2
ALG10 WILD-TYPE 18 93 93
'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S1888.  Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ALG10 MUTATED 0 1 5 1 0
ALG10 WILD-TYPE 17 33 85 68 1
'DAO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.41

Table S1889.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DAO MUTATED 1 1 9
DAO WILD-TYPE 79 54 143
'DAO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S1890.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DAO MUTATED 7 1 2
DAO WILD-TYPE 114 36 84
'DAO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.84

Table S1891.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DAO MUTATED 9 0 2
DAO WILD-TYPE 155 13 78
'DAO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S1892.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DAO MUTATED 1 8 0 2
DAO WILD-TYPE 48 94 4 100
'DAO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S1893.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DAO MUTATED 0 9 2
DAO WILD-TYPE 26 170 82
'DAO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S1894.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DAO MUTATED 1 4 5 0 1
DAO WILD-TYPE 68 54 107 1 48
'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S1895.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DAO MUTATED 1 5 2
DAO WILD-TYPE 17 93 93
'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S1896.  Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DAO MUTATED 0 2 4 2 0
DAO WILD-TYPE 17 32 86 67 1
'CDKL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.23

Table S1897.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDKL3 MUTATED 0 0 7
CDKL3 WILD-TYPE 80 55 145
'CDKL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.94

Table S1898.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDKL3 MUTATED 4 0 2
CDKL3 WILD-TYPE 117 37 84
'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S1899.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDKL3 MUTATED 4 1 1
CDKL3 WILD-TYPE 160 12 79
'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S1900.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDKL3 MUTATED 0 3 0 3
CDKL3 WILD-TYPE 49 99 4 99
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S1901.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDKL3 MUTATED 0 7 0
CDKL3 WILD-TYPE 26 172 84
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S1902.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDKL3 MUTATED 0 2 5 0 0
CDKL3 WILD-TYPE 69 56 107 1 49
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S1903.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDKL3 MUTATED 0 5 0
CDKL3 WILD-TYPE 18 93 95
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S1904.  Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDKL3 MUTATED 0 1 4 0 0
CDKL3 WILD-TYPE 17 33 86 69 1
'GLIPR1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S1905.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GLIPR1L2 MUTATED 1 1 7
GLIPR1L2 WILD-TYPE 79 54 145
'GLIPR1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.96

Table S1906.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GLIPR1L2 MUTATED 5 1 2
GLIPR1L2 WILD-TYPE 116 36 84
'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S1907.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GLIPR1L2 MUTATED 6 1 1
GLIPR1L2 WILD-TYPE 158 12 79
'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.25

Table S1908.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GLIPR1L2 MUTATED 0 5 1 2
GLIPR1L2 WILD-TYPE 49 97 3 100
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S1909.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GLIPR1L2 MUTATED 0 8 2
GLIPR1L2 WILD-TYPE 26 171 82
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.23

Table S1910.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GLIPR1L2 MUTATED 1 6 2 0 1
GLIPR1L2 WILD-TYPE 68 52 110 1 48
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S1911.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GLIPR1L2 MUTATED 0 6 2
GLIPR1L2 WILD-TYPE 18 92 93
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.51

Table S1912.  Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GLIPR1L2 MUTATED 0 3 4 1 0
GLIPR1L2 WILD-TYPE 17 31 86 68 1
'FZD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.27

Table S1913.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FZD3 MUTATED 1 0 9
FZD3 WILD-TYPE 79 55 143
'FZD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S1914.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FZD3 MUTATED 7 0 1
FZD3 WILD-TYPE 114 37 85
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S1915.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FZD3 MUTATED 4 1 2
FZD3 WILD-TYPE 160 12 78
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S1916.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FZD3 MUTATED 0 4 0 3
FZD3 WILD-TYPE 49 98 4 99
'FZD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.18

Table S1917.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FZD3 MUTATED 0 10 0
FZD3 WILD-TYPE 26 169 84

Figure S636.  Get High-res Image Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0649 (Fisher's exact test), Q value = 0.24

Table S1918.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FZD3 MUTATED 0 4 6 0 0
FZD3 WILD-TYPE 69 54 106 1 49
'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.27

Table S1919.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FZD3 MUTATED 0 7 1
FZD3 WILD-TYPE 18 91 94
'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S1920.  Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FZD3 MUTATED 0 3 5 0 0
FZD3 WILD-TYPE 17 31 85 69 1
'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.23

Table S1921.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CETN3 MUTATED 0 0 7
CETN3 WILD-TYPE 80 55 145
'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S1922.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CETN3 MUTATED 4 0 1
CETN3 WILD-TYPE 117 37 85
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.85

Table S1923.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CETN3 MUTATED 3 0 2
CETN3 WILD-TYPE 161 13 78
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 0.94

Table S1924.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CETN3 MUTATED 0 3 0 2
CETN3 WILD-TYPE 49 99 4 100
'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S1925.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CETN3 MUTATED 0 6 1
CETN3 WILD-TYPE 26 173 83
'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S1926.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CETN3 MUTATED 0 3 4 0 0
CETN3 WILD-TYPE 69 55 108 1 49
'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S1927.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CETN3 MUTATED 1 3 1
CETN3 WILD-TYPE 17 95 94
'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.64

Table S1928.  Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CETN3 MUTATED 0 2 2 1 0
CETN3 WILD-TYPE 17 32 88 68 1
'PSME4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.013

Table S1929.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PSME4 MUTATED 3 2 29
PSME4 WILD-TYPE 77 53 123

Figure S637.  Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSME4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.012

Table S1930.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PSME4 MUTATED 22 1 2
PSME4 WILD-TYPE 99 36 84

Figure S638.  Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S1931.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PSME4 MUTATED 23 1 7
PSME4 WILD-TYPE 141 12 73
'PSME4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.013

Table S1932.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PSME4 MUTATED 0 22 0 9
PSME4 WILD-TYPE 49 80 4 93

Figure S639.  Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.087

Table S1933.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PSME4 MUTATED 1 30 4
PSME4 WILD-TYPE 25 149 80

Figure S640.  Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S1934.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PSME4 MUTATED 2 19 13 0 1
PSME4 WILD-TYPE 67 39 99 1 48

Figure S641.  Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.23

Table S1935.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PSME4 MUTATED 1 15 5
PSME4 WILD-TYPE 17 83 90
'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00849 (Fisher's exact test), Q value = 0.091

Table S1936.  Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PSME4 MUTATED 0 9 9 3 0
PSME4 WILD-TYPE 17 25 81 66 1

Figure S642.  Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNPNAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S1937.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GNPNAT1 MUTATED 0 1 3
GNPNAT1 WILD-TYPE 80 54 149
'GNPNAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1938.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GNPNAT1 MUTATED 2 0 1
GNPNAT1 WILD-TYPE 119 37 85
'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.3

Table S1939.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GNPNAT1 MUTATED 1 1 1
GNPNAT1 WILD-TYPE 163 12 79
'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.22

Table S1940.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GNPNAT1 MUTATED 0 1 1 1
GNPNAT1 WILD-TYPE 49 101 3 101
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1941.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GNPNAT1 MUTATED 0 3 1
GNPNAT1 WILD-TYPE 26 176 83
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S1942.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GNPNAT1 MUTATED 0 0 4 0 0
GNPNAT1 WILD-TYPE 69 58 108 1 49
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1943.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GNPNAT1 MUTATED 0 2 1
GNPNAT1 WILD-TYPE 18 96 94
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1944.  Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GNPNAT1 MUTATED 0 0 2 1 0
GNPNAT1 WILD-TYPE 17 34 88 68 1
'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S1945.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZDHHC7 MUTATED 0 0 6
ZDHHC7 WILD-TYPE 80 55 146
'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S1946.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZDHHC7 MUTATED 5 0 0
ZDHHC7 WILD-TYPE 116 37 86
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.45

Table S1947.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZDHHC7 MUTATED 6 0 0
ZDHHC7 WILD-TYPE 158 13 80
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.17

Table S1948.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZDHHC7 MUTATED 0 6 0 0
ZDHHC7 WILD-TYPE 49 96 4 102

Figure S643.  Get High-res Image Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S1949.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZDHHC7 MUTATED 0 6 0
ZDHHC7 WILD-TYPE 26 173 84
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S1950.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZDHHC7 MUTATED 0 3 3 0 0
ZDHHC7 WILD-TYPE 69 55 109 1 49
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.3

Table S1951.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZDHHC7 MUTATED 0 5 0
ZDHHC7 WILD-TYPE 18 93 95
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S1952.  Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZDHHC7 MUTATED 0 2 3 0 0
ZDHHC7 WILD-TYPE 17 32 87 69 1
'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.17

Table S1953.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PANK1 MUTATED 0 0 8
PANK1 WILD-TYPE 80 55 144

Figure S644.  Get High-res Image Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.85

Table S1954.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PANK1 MUTATED 3 0 3
PANK1 WILD-TYPE 118 37 83
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S1955.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PANK1 MUTATED 5 1 2
PANK1 WILD-TYPE 159 12 78
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.58

Table S1956.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PANK1 MUTATED 0 5 0 3
PANK1 WILD-TYPE 49 97 4 99
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S1957.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PANK1 MUTATED 0 7 1
PANK1 WILD-TYPE 26 172 83
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.97

Table S1958.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PANK1 MUTATED 1 2 4 0 1
PANK1 WILD-TYPE 68 56 108 1 48
'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S1959.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PANK1 MUTATED 0 5 1
PANK1 WILD-TYPE 18 93 94
'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S1960.  Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PANK1 MUTATED 0 0 5 1 0
PANK1 WILD-TYPE 17 34 85 68 1
'FAM116A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S1961.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM116A MUTATED 0 0 6
FAM116A WILD-TYPE 80 55 146
'FAM116A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S1962.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM116A MUTATED 3 1 0
FAM116A WILD-TYPE 118 36 86
'FAM116A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.86

Table S1963.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM116A MUTATED 5 0 1
FAM116A WILD-TYPE 159 13 79
'FAM116A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S1964.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM116A MUTATED 0 5 0 1
FAM116A WILD-TYPE 49 97 4 101
'FAM116A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.91

Table S1965.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM116A MUTATED 0 5 1
FAM116A WILD-TYPE 26 174 83
'FAM116A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.21

Table S1966.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM116A MUTATED 0 4 1 0 1
FAM116A WILD-TYPE 69 54 111 1 48
'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S1967.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM116A MUTATED 1 2 1
FAM116A WILD-TYPE 17 96 94
'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S1968.  Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM116A MUTATED 0 2 1 1 0
FAM116A WILD-TYPE 17 32 89 68 1
'C11ORF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.17

Table S1969.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C11ORF9 MUTATED 0 0 8
C11ORF9 WILD-TYPE 80 55 144

Figure S645.  Get High-res Image Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C11ORF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.94

Table S1970.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C11ORF9 MUTATED 4 0 2
C11ORF9 WILD-TYPE 117 37 84
'C11ORF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.91

Table S1971.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C11ORF9 MUTATED 5 0 3
C11ORF9 WILD-TYPE 159 13 77
'C11ORF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S1972.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C11ORF9 MUTATED 0 5 0 3
C11ORF9 WILD-TYPE 49 97 4 99
'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S1973.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C11ORF9 MUTATED 0 7 1
C11ORF9 WILD-TYPE 26 172 83
'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.5

Table S1974.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C11ORF9 MUTATED 0 3 4 0 1
C11ORF9 WILD-TYPE 69 55 108 1 48
'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.52

Table S1975.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C11ORF9 MUTATED 0 5 1
C11ORF9 WILD-TYPE 18 93 94
'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.9

Table S1976.  Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C11ORF9 MUTATED 0 1 4 1 0
C11ORF9 WILD-TYPE 17 33 86 68 1
'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.052

Table S1977.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0195 MUTATED 0 1 14
KIAA0195 WILD-TYPE 80 54 138

Figure S646.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.067

Table S1978.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0195 MUTATED 13 0 1
KIAA0195 WILD-TYPE 108 37 85

Figure S647.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.29

Table S1979.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0195 MUTATED 12 0 1
KIAA0195 WILD-TYPE 152 13 79
'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00158 (Fisher's exact test), Q value = 0.035

Table S1980.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0195 MUTATED 0 12 0 1
KIAA0195 WILD-TYPE 49 90 4 101

Figure S648.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S1981.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0195 MUTATED 0 15 1
KIAA0195 WILD-TYPE 26 164 83

Figure S649.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.019

Table S1982.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0195 MUTATED 0 10 5 0 1
KIAA0195 WILD-TYPE 69 48 107 1 48

Figure S650.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.067

Table S1983.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0195 MUTATED 0 11 1
KIAA0195 WILD-TYPE 18 87 94

Figure S651.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00552 (Fisher's exact test), Q value = 0.072

Table S1984.  Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0195 MUTATED 0 7 4 1 0
KIAA0195 WILD-TYPE 17 27 86 68 1

Figure S652.  Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRIP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S1985.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TRIP10 MUTATED 0 1 6
TRIP10 WILD-TYPE 80 54 146
'TRIP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S1986.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TRIP10 MUTATED 6 0 2
TRIP10 WILD-TYPE 115 37 84
'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S1987.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TRIP10 MUTATED 6 1 1
TRIP10 WILD-TYPE 158 12 79
'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S1988.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TRIP10 MUTATED 0 6 0 2
TRIP10 WILD-TYPE 49 96 4 100
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.28

Table S1989.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TRIP10 MUTATED 0 8 0
TRIP10 WILD-TYPE 26 171 84
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.27

Table S1990.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TRIP10 MUTATED 0 4 4 0 0
TRIP10 WILD-TYPE 69 54 108 1 49
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.2

Table S1991.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TRIP10 MUTATED 0 6 0
TRIP10 WILD-TYPE 18 92 95

Figure S653.  Get High-res Image Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.42

Table S1992.  Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TRIP10 MUTATED 0 2 4 0 0
TRIP10 WILD-TYPE 17 32 86 69 1
'PRKAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S1993.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRKAB1 MUTATED 2 0 4
PRKAB1 WILD-TYPE 78 55 148
'PRKAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.49

Table S1994.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRKAB1 MUTATED 3 1 0
PRKAB1 WILD-TYPE 118 36 86
'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S1995.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRKAB1 MUTATED 3 0 2
PRKAB1 WILD-TYPE 161 13 78
'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1996.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRKAB1 MUTATED 1 2 0 2
PRKAB1 WILD-TYPE 48 100 4 100
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1997.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRKAB1 MUTATED 0 4 2
PRKAB1 WILD-TYPE 26 175 82
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1998.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRKAB1 MUTATED 2 1 2 0 1
PRKAB1 WILD-TYPE 67 57 110 1 48
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1999.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRKAB1 MUTATED 0 2 2
PRKAB1 WILD-TYPE 18 96 93
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S2000.  Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRKAB1 MUTATED 1 0 1 2 0
PRKAB1 WILD-TYPE 16 34 89 67 1
'FAM193A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S2001.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM193A MUTATED 2 1 12
FAM193A WILD-TYPE 78 54 140
'FAM193A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S2002.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM193A MUTATED 6 2 1
FAM193A WILD-TYPE 115 35 85
'FAM193A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S2003.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM193A MUTATED 13 0 2
FAM193A WILD-TYPE 151 13 78
'FAM193A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.13

Table S2004.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM193A MUTATED 1 12 0 2
FAM193A WILD-TYPE 48 90 4 100

Figure S654.  Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.19

Table S2005.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM193A MUTATED 0 14 1
FAM193A WILD-TYPE 26 165 83

Figure S655.  Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S2006.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM193A MUTATED 3 6 6 0 0
FAM193A WILD-TYPE 66 52 106 1 49
'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.46

Table S2007.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM193A MUTATED 1 5 1
FAM193A WILD-TYPE 17 93 94
'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S2008.  Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM193A MUTATED 1 2 3 1 0
FAM193A WILD-TYPE 16 32 87 68 1
'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.17

Table S2009.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AXIN2 MUTATED 1 1 13
AXIN2 WILD-TYPE 79 54 139

Figure S656.  Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.25

Table S2010.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AXIN2 MUTATED 10 0 2
AXIN2 WILD-TYPE 111 37 84
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S2011.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AXIN2 MUTATED 10 1 2
AXIN2 WILD-TYPE 154 12 78
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.2

Table S2012.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AXIN2 MUTATED 0 10 0 3
AXIN2 WILD-TYPE 49 92 4 99

Figure S657.  Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.19

Table S2013.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AXIN2 MUTATED 0 14 1
AXIN2 WILD-TYPE 26 165 83

Figure S658.  Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S2014.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AXIN2 MUTATED 1 8 5 0 1
AXIN2 WILD-TYPE 68 50 107 1 48

Figure S659.  Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.19

Table S2015.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AXIN2 MUTATED 0 10 2
AXIN2 WILD-TYPE 18 88 93

Figure S660.  Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S2016.  Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AXIN2 MUTATED 0 3 8 1 0
AXIN2 WILD-TYPE 17 31 82 68 1
'CYP27B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S2017.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CYP27B1 MUTATED 0 2 3
CYP27B1 WILD-TYPE 80 53 149
'CYP27B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S2018.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CYP27B1 MUTATED 3 1 1
CYP27B1 WILD-TYPE 118 36 85
'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2019.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CYP27B1 MUTATED 3 0 1
CYP27B1 WILD-TYPE 161 13 79
'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.7

Table S2020.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CYP27B1 MUTATED 0 3 0 1
CYP27B1 WILD-TYPE 49 99 4 101
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.88

Table S2021.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CYP27B1 MUTATED 0 3 2
CYP27B1 WILD-TYPE 26 176 82
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S2022.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CYP27B1 MUTATED 0 2 3 0 0
CYP27B1 WILD-TYPE 69 56 109 1 49
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.73

Table S2023.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CYP27B1 MUTATED 1 2 2
CYP27B1 WILD-TYPE 17 96 93
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2024.  Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CYP27B1 MUTATED 0 1 2 2 0
CYP27B1 WILD-TYPE 17 33 88 67 1
'C12ORF51 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.013

Table S2025.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C12ORF51 MUTATED 2 2 26
C12ORF51 WILD-TYPE 78 53 126

Figure S661.  Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C12ORF51 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.051

Table S2026.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C12ORF51 MUTATED 19 2 2
C12ORF51 WILD-TYPE 102 35 84

Figure S662.  Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S2027.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C12ORF51 MUTATED 16 2 7
C12ORF51 WILD-TYPE 148 11 73
'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0906 (Fisher's exact test), Q value = 0.28

Table S2028.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C12ORF51 MUTATED 2 16 0 7
C12ORF51 WILD-TYPE 47 86 4 95
'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S2029.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C12ORF51 MUTATED 2 23 5
C12ORF51 WILD-TYPE 24 156 79
'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.25

Table S2030.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C12ORF51 MUTATED 3 11 13 0 3
C12ORF51 WILD-TYPE 66 47 99 1 46
'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.26

Table S2031.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C12ORF51 MUTATED 3 13 5
C12ORF51 WILD-TYPE 15 85 90
'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S2032.  Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C12ORF51 MUTATED 1 5 11 4 0
C12ORF51 WILD-TYPE 16 29 79 65 1
'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S2033.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
UBQLN2 MUTATED 0 0 5
UBQLN2 WILD-TYPE 80 55 147
'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2034.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
UBQLN2 MUTATED 2 0 2
UBQLN2 WILD-TYPE 119 37 84
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S2035.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
UBQLN2 MUTATED 4 1 0
UBQLN2 WILD-TYPE 160 12 80
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S2036.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
UBQLN2 MUTATED 0 4 0 1
UBQLN2 WILD-TYPE 49 98 4 101
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S2037.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UBQLN2 MUTATED 0 5 0
UBQLN2 WILD-TYPE 26 174 84
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S2038.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UBQLN2 MUTATED 0 2 3 0 0
UBQLN2 WILD-TYPE 69 56 109 1 49
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S2039.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
UBQLN2 MUTATED 0 3 0
UBQLN2 WILD-TYPE 18 95 95
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S2040.  Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
UBQLN2 MUTATED 0 0 3 0 0
UBQLN2 WILD-TYPE 17 34 87 69 1
'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.23

Table S2041.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PHACTR2 MUTATED 2 0 11
PHACTR2 WILD-TYPE 78 55 141
'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00975 (Fisher's exact test), Q value = 0.1

Table S2042.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PHACTR2 MUTATED 10 1 0
PHACTR2 WILD-TYPE 111 36 86

Figure S663.  Get High-res Image Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S2043.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PHACTR2 MUTATED 10 0 2
PHACTR2 WILD-TYPE 154 13 78
'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2044.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PHACTR2 MUTATED 1 9 0 2
PHACTR2 WILD-TYPE 48 93 4 100
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S2045.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PHACTR2 MUTATED 0 11 2
PHACTR2 WILD-TYPE 26 168 82
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.64

Table S2046.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PHACTR2 MUTATED 2 5 4 0 2
PHACTR2 WILD-TYPE 67 53 108 1 47
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.88

Table S2047.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PHACTR2 MUTATED 1 4 4
PHACTR2 WILD-TYPE 17 94 91
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S2048.  Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PHACTR2 MUTATED 1 3 3 2 0
PHACTR2 WILD-TYPE 16 31 87 67 1
'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00637 (Fisher's exact test), Q value = 0.079

Table S2049.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ADNP2 MUTATED 1 1 16
ADNP2 WILD-TYPE 79 54 136

Figure S664.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.021

Table S2050.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ADNP2 MUTATED 14 1 0
ADNP2 WILD-TYPE 107 36 86

Figure S665.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00405 (Fisher's exact test), Q value = 0.061

Table S2051.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ADNP2 MUTATED 16 0 0
ADNP2 WILD-TYPE 148 13 80

Figure S666.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00639 (Fisher's exact test), Q value = 0.079

Table S2052.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ADNP2 MUTATED 0 13 0 3
ADNP2 WILD-TYPE 49 89 4 99

Figure S667.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00317 (Fisher's exact test), Q value = 0.054

Table S2053.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ADNP2 MUTATED 1 17 0
ADNP2 WILD-TYPE 25 162 84

Figure S668.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S2054.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ADNP2 MUTATED 0 12 6 0 0
ADNP2 WILD-TYPE 69 46 106 1 49

Figure S669.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.036

Table S2055.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ADNP2 MUTATED 0 13 1
ADNP2 WILD-TYPE 18 85 94

Figure S670.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.1

Table S2056.  Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ADNP2 MUTATED 0 4 10 0 0
ADNP2 WILD-TYPE 17 30 80 69 1

Figure S671.  Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00339 (Fisher's exact test), Q value = 0.056

Table S2057.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
VPRBP MUTATED 0 0 12
VPRBP WILD-TYPE 80 55 140

Figure S672.  Get High-res Image Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPRBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S2058.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
VPRBP MUTATED 5 0 2
VPRBP WILD-TYPE 116 37 84
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S2059.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
VPRBP MUTATED 8 0 2
VPRBP WILD-TYPE 156 13 78
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S2060.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
VPRBP MUTATED 0 7 0 3
VPRBP WILD-TYPE 49 95 4 99
'VPRBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2061.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
VPRBP MUTATED 0 11 1
VPRBP WILD-TYPE 26 168 83
'VPRBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.19

Table S2062.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
VPRBP MUTATED 1 7 3 0 1
VPRBP WILD-TYPE 68 51 109 1 48

Figure S673.  Get High-res Image Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S2063.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
VPRBP MUTATED 1 4 2
VPRBP WILD-TYPE 17 94 93
'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.73

Table S2064.  Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
VPRBP MUTATED 0 1 5 1 0
VPRBP WILD-TYPE 17 33 85 68 1
'PCGF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S2065.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PCGF3 MUTATED 0 0 6
PCGF3 WILD-TYPE 80 55 146
'PCGF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.23

Table S2066.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PCGF3 MUTATED 6 0 0
PCGF3 WILD-TYPE 115 37 86
'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S2067.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PCGF3 MUTATED 5 0 0
PCGF3 WILD-TYPE 159 13 80
'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.24

Table S2068.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PCGF3 MUTATED 0 5 0 0
PCGF3 WILD-TYPE 49 97 4 102
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.51

Table S2069.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PCGF3 MUTATED 0 6 0
PCGF3 WILD-TYPE 26 173 84
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S2070.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PCGF3 MUTATED 0 3 3 0 0
PCGF3 WILD-TYPE 69 55 109 1 49
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S2071.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PCGF3 MUTATED 0 5 1
PCGF3 WILD-TYPE 18 93 94
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.42

Table S2072.  Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PCGF3 MUTATED 0 2 4 0 0
PCGF3 WILD-TYPE 17 32 86 69 1
'C20ORF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S2073.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C20ORF160 MUTATED 0 1 7
C20ORF160 WILD-TYPE 80 54 145
'C20ORF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S2074.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C20ORF160 MUTATED 6 0 2
C20ORF160 WILD-TYPE 115 37 84
'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.86

Table S2075.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C20ORF160 MUTATED 5 0 1
C20ORF160 WILD-TYPE 159 13 79
'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S2076.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C20ORF160 MUTATED 1 5 0 0
C20ORF160 WILD-TYPE 48 97 4 102
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S2077.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C20ORF160 MUTATED 0 7 1
C20ORF160 WILD-TYPE 26 172 83
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S2078.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C20ORF160 MUTATED 1 4 3 0 0
C20ORF160 WILD-TYPE 68 54 109 1 49
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S2079.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C20ORF160 MUTATED 0 6 1
C20ORF160 WILD-TYPE 18 92 94
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S2080.  Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C20ORF160 MUTATED 1 2 4 0 0
C20ORF160 WILD-TYPE 16 32 86 69 1
'EFHA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.24

Table S2081.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EFHA1 MUTATED 0 1 8
EFHA1 WILD-TYPE 80 54 144
'EFHA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S2082.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EFHA1 MUTATED 7 0 1
EFHA1 WILD-TYPE 114 37 85
'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S2083.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EFHA1 MUTATED 6 0 1
EFHA1 WILD-TYPE 158 13 79
'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2084.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EFHA1 MUTATED 0 6 0 1
EFHA1 WILD-TYPE 49 96 4 101
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S2085.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EFHA1 MUTATED 0 8 1
EFHA1 WILD-TYPE 26 171 83
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 0.26

Table S2086.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EFHA1 MUTATED 0 5 3 0 1
EFHA1 WILD-TYPE 69 53 109 1 48
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S2087.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EFHA1 MUTATED 0 6 2
EFHA1 WILD-TYPE 18 92 93
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.56

Table S2088.  Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EFHA1 MUTATED 0 1 6 1 0
EFHA1 WILD-TYPE 17 33 84 68 1
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0054

Table S2089.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ALPK2 MUTATED 0 0 19
ALPK2 WILD-TYPE 80 55 133

Figure S674.  Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S2090.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ALPK2 MUTATED 10 1 3
ALPK2 WILD-TYPE 111 36 83
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S2091.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ALPK2 MUTATED 13 0 4
ALPK2 WILD-TYPE 151 13 76
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S2092.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ALPK2 MUTATED 0 13 0 4
ALPK2 WILD-TYPE 49 89 4 98

Figure S675.  Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.19

Table S2093.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ALPK2 MUTATED 0 17 2
ALPK2 WILD-TYPE 26 162 82

Figure S676.  Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.013

Table S2094.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ALPK2 MUTATED 0 11 7 0 1
ALPK2 WILD-TYPE 69 47 105 1 48

Figure S677.  Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S2095.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ALPK2 MUTATED 0 9 3
ALPK2 WILD-TYPE 18 89 92
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S2096.  Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ALPK2 MUTATED 0 4 7 1 0
ALPK2 WILD-TYPE 17 30 83 68 1
'C16ORF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S2097.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C16ORF7 MUTATED 0 2 12
C16ORF7 WILD-TYPE 80 53 140

Figure S678.  Get High-res Image Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C16ORF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S2098.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C16ORF7 MUTATED 8 0 2
C16ORF7 WILD-TYPE 113 37 84
'C16ORF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 0.95

Table S2099.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C16ORF7 MUTATED 9 0 3
C16ORF7 WILD-TYPE 155 13 77
'C16ORF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S2100.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C16ORF7 MUTATED 1 8 0 3
C16ORF7 WILD-TYPE 48 94 4 99
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S2101.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C16ORF7 MUTATED 0 12 2
C16ORF7 WILD-TYPE 26 167 82
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.71

Table S2102.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C16ORF7 MUTATED 2 4 7 0 1
C16ORF7 WILD-TYPE 67 54 105 1 48
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2103.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C16ORF7 MUTATED 1 6 1
C16ORF7 WILD-TYPE 17 92 94
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.51

Table S2104.  Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C16ORF7 MUTATED 0 3 4 1 0
C16ORF7 WILD-TYPE 17 31 86 68 1
'HIVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00107 (Fisher's exact test), Q value = 0.027

Table S2105.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HIVEP1 MUTATED 0 4 18
HIVEP1 WILD-TYPE 80 51 134

Figure S679.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.14

Table S2106.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HIVEP1 MUTATED 16 1 3
HIVEP1 WILD-TYPE 105 36 83

Figure S680.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S2107.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HIVEP1 MUTATED 16 1 3
HIVEP1 WILD-TYPE 148 12 77
'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.013

Table S2108.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HIVEP1 MUTATED 0 16 1 3
HIVEP1 WILD-TYPE 49 86 3 99

Figure S681.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S2109.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HIVEP1 MUTATED 0 20 2
HIVEP1 WILD-TYPE 26 159 82

Figure S682.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.012

Table S2110.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HIVEP1 MUTATED 0 7 15 0 0
HIVEP1 WILD-TYPE 69 51 97 1 49

Figure S683.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00545 (Fisher's exact test), Q value = 0.072

Table S2111.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HIVEP1 MUTATED 1 14 2
HIVEP1 WILD-TYPE 17 84 93

Figure S684.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.041

Table S2112.  Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HIVEP1 MUTATED 0 4 13 0 0
HIVEP1 WILD-TYPE 17 30 77 69 1

Figure S685.  Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VEZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S2113.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
VEZF1 MUTATED 0 0 5
VEZF1 WILD-TYPE 80 55 147
'VEZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.85

Table S2114.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
VEZF1 MUTATED 1 0 2
VEZF1 WILD-TYPE 120 37 84
'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S2115.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
VEZF1 MUTATED 1 0 3
VEZF1 WILD-TYPE 163 13 77
'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S2116.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
VEZF1 MUTATED 0 1 0 3
VEZF1 WILD-TYPE 49 101 4 99
'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2117.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
VEZF1 MUTATED 0 4 1
VEZF1 WILD-TYPE 26 175 83
'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2118.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
VEZF1 MUTATED 1 1 3 0 0
VEZF1 WILD-TYPE 68 57 109 1 49
'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2119.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
VEZF1 MUTATED 0 2 1
VEZF1 WILD-TYPE 18 96 94
'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S2120.  Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
VEZF1 MUTATED 0 1 1 1 0
VEZF1 WILD-TYPE 17 33 89 68 1
'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.5

Table S2121.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SBNO1 MUTATED 2 3 12
SBNO1 WILD-TYPE 78 52 140
'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S2122.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SBNO1 MUTATED 12 1 3
SBNO1 WILD-TYPE 109 36 83
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S2123.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SBNO1 MUTATED 14 0 2
SBNO1 WILD-TYPE 150 13 78
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00681 (Fisher's exact test), Q value = 0.082

Table S2124.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SBNO1 MUTATED 0 13 0 3
SBNO1 WILD-TYPE 49 89 4 99

Figure S686.  Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.26

Table S2125.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SBNO1 MUTATED 0 15 2
SBNO1 WILD-TYPE 26 164 82
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00227 (Fisher's exact test), Q value = 0.044

Table S2126.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SBNO1 MUTATED 0 9 7 0 1
SBNO1 WILD-TYPE 69 49 105 1 48

Figure S687.  Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.23

Table S2127.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SBNO1 MUTATED 0 11 3
SBNO1 WILD-TYPE 18 87 92
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2128.  Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SBNO1 MUTATED 0 5 7 2 0
SBNO1 WILD-TYPE 17 29 83 67 1
'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S2129.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WASF3 MUTATED 2 1 8
WASF3 WILD-TYPE 78 54 144
'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00429 (Fisher's exact test), Q value = 0.063

Table S2130.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WASF3 MUTATED 10 0 0
WASF3 WILD-TYPE 111 37 86

Figure S688.  Get High-res Image Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S2131.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WASF3 MUTATED 8 0 1
WASF3 WILD-TYPE 156 13 79
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S2132.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WASF3 MUTATED 0 7 0 2
WASF3 WILD-TYPE 49 95 4 100
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.83

Table S2133.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WASF3 MUTATED 1 8 2
WASF3 WILD-TYPE 25 171 82
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.1

Table S2134.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WASF3 MUTATED 0 7 3 0 1
WASF3 WILD-TYPE 69 51 109 1 48

Figure S689.  Get High-res Image Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2135.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WASF3 MUTATED 0 4 4
WASF3 WILD-TYPE 18 94 91
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S2136.  Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WASF3 MUTATED 0 1 5 2 0
WASF3 WILD-TYPE 17 33 85 67 1
'RAB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S2137.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RAB14 MUTATED 1 1 6
RAB14 WILD-TYPE 79 54 146
'RAB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S2138.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RAB14 MUTATED 5 1 0
RAB14 WILD-TYPE 116 36 86
'RAB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S2139.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RAB14 MUTATED 5 0 0
RAB14 WILD-TYPE 159 13 80
'RAB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S2140.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RAB14 MUTATED 1 4 0 0
RAB14 WILD-TYPE 48 98 4 102
'RAB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S2141.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RAB14 MUTATED 0 7 1
RAB14 WILD-TYPE 26 172 83
'RAB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.24

Table S2142.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RAB14 MUTATED 1 5 1 0 1
RAB14 WILD-TYPE 68 53 111 1 48
'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S2143.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RAB14 MUTATED 0 5 1
RAB14 WILD-TYPE 18 93 94
'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S2144.  Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RAB14 MUTATED 1 3 1 1 0
RAB14 WILD-TYPE 16 31 89 68 1
'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.24

Table S2145.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF124 MUTATED 0 1 8
ZNF124 WILD-TYPE 80 54 144
'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S2146.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF124 MUTATED 4 1 1
ZNF124 WILD-TYPE 117 36 85
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S2147.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF124 MUTATED 7 0 1
ZNF124 WILD-TYPE 157 13 79
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.26

Table S2148.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF124 MUTATED 0 7 0 1
ZNF124 WILD-TYPE 49 95 4 101
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.27

Table S2149.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF124 MUTATED 0 9 0
ZNF124 WILD-TYPE 26 170 84
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S2150.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF124 MUTATED 0 6 3 0 0
ZNF124 WILD-TYPE 69 52 109 1 49

Figure S690.  Get High-res Image Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S2151.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF124 MUTATED 0 4 1
ZNF124 WILD-TYPE 18 94 94
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S2152.  Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF124 MUTATED 0 1 4 0 0
ZNF124 WILD-TYPE 17 33 86 69 1
'RB1CC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.17

Table S2153.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RB1CC1 MUTATED 0 1 9
RB1CC1 WILD-TYPE 80 54 143

Figure S691.  Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RB1CC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S2154.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RB1CC1 MUTATED 7 0 1
RB1CC1 WILD-TYPE 114 37 85
'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S2155.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RB1CC1 MUTATED 7 1 1
RB1CC1 WILD-TYPE 157 12 79
'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S2156.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RB1CC1 MUTATED 0 7 0 2
RB1CC1 WILD-TYPE 49 95 4 100
'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.18

Table S2157.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RB1CC1 MUTATED 0 10 0
RB1CC1 WILD-TYPE 26 169 84

Figure S692.  Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S2158.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RB1CC1 MUTATED 1 4 5 0 0
RB1CC1 WILD-TYPE 68 54 107 1 49
'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.15

Table S2159.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RB1CC1 MUTATED 0 7 0
RB1CC1 WILD-TYPE 18 91 95

Figure S693.  Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S2160.  Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RB1CC1 MUTATED 0 3 4 0 0
RB1CC1 WILD-TYPE 17 31 86 69 1
'HIVEP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S2161.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HIVEP3 MUTATED 5 3 19
HIVEP3 WILD-TYPE 75 52 133
'HIVEP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.097

Table S2162.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HIVEP3 MUTATED 19 1 4
HIVEP3 WILD-TYPE 102 36 82

Figure S694.  Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S2163.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HIVEP3 MUTATED 19 1 5
HIVEP3 WILD-TYPE 145 12 75
'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.64

Table S2164.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HIVEP3 MUTATED 2 12 0 11
HIVEP3 WILD-TYPE 47 90 4 91
'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00281 (Fisher's exact test), Q value = 0.051

Table S2165.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HIVEP3 MUTATED 3 23 1
HIVEP3 WILD-TYPE 23 156 83

Figure S695.  Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.27

Table S2166.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HIVEP3 MUTATED 7 10 9 0 1
HIVEP3 WILD-TYPE 62 48 103 1 48
'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.036

Table S2167.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HIVEP3 MUTATED 1 18 3
HIVEP3 WILD-TYPE 17 80 92

Figure S696.  Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0079 (Fisher's exact test), Q value = 0.087

Table S2168.  Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HIVEP3 MUTATED 1 6 14 1 0
HIVEP3 WILD-TYPE 16 28 76 68 1

Figure S697.  Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.12

Table S2169.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OTX2 MUTATED 0 0 9
OTX2 WILD-TYPE 80 55 143

Figure S698.  Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S2170.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OTX2 MUTATED 5 0 1
OTX2 WILD-TYPE 116 37 85
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S2171.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OTX2 MUTATED 5 1 2
OTX2 WILD-TYPE 159 12 78
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S2172.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OTX2 MUTATED 0 5 0 3
OTX2 WILD-TYPE 49 97 4 99
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.27

Table S2173.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OTX2 MUTATED 0 9 0
OTX2 WILD-TYPE 26 170 84
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 0.27

Table S2174.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OTX2 MUTATED 0 4 5 0 0
OTX2 WILD-TYPE 69 54 107 1 49
'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.2

Table S2175.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OTX2 MUTATED 0 6 0
OTX2 WILD-TYPE 18 92 95

Figure S699.  Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S2176.  Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OTX2 MUTATED 0 2 4 0 0
OTX2 WILD-TYPE 17 32 86 69 1
'CRYGD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.18

Table S2177.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CRYGD MUTATED 0 2 10
CRYGD WILD-TYPE 80 53 142

Figure S700.  Get High-res Image Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRYGD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.18

Table S2178.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CRYGD MUTATED 9 0 1
CRYGD WILD-TYPE 112 37 85

Figure S701.  Get High-res Image Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CRYGD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2179.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CRYGD MUTATED 7 0 3
CRYGD WILD-TYPE 157 13 77
'CRYGD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S2180.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CRYGD MUTATED 0 7 0 3
CRYGD WILD-TYPE 49 95 4 99
'CRYGD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.84

Table S2181.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CRYGD MUTATED 0 9 3
CRYGD WILD-TYPE 26 170 81
'CRYGD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S2182.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CRYGD MUTATED 0 3 6 0 3
CRYGD WILD-TYPE 69 55 106 1 46
'CRYGD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.95

Table S2183.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CRYGD MUTATED 0 5 3
CRYGD WILD-TYPE 18 93 92
'CRYGD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.85

Table S2184.  Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CRYGD MUTATED 0 2 4 2 0
CRYGD WILD-TYPE 17 32 86 67 1
'MSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S2185.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MSL3 MUTATED 1 1 8
MSL3 WILD-TYPE 79 54 144
'MSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S2186.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MSL3 MUTATED 5 0 5
MSL3 WILD-TYPE 116 37 81
'MSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2187.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MSL3 MUTATED 6 0 3
MSL3 WILD-TYPE 158 13 77
'MSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S2188.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MSL3 MUTATED 0 4 0 5
MSL3 WILD-TYPE 49 98 4 97
'MSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S2189.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MSL3 MUTATED 0 8 2
MSL3 WILD-TYPE 26 171 82
'MSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S2190.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MSL3 MUTATED 0 3 5 0 2
MSL3 WILD-TYPE 69 55 107 1 47
'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.95

Table S2191.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MSL3 MUTATED 0 5 3
MSL3 WILD-TYPE 18 93 92
'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S2192.  Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MSL3 MUTATED 0 2 4 2 0
MSL3 WILD-TYPE 17 32 86 67 1
'GPR160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S2193.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPR160 MUTATED 0 1 7
GPR160 WILD-TYPE 80 54 145
'GPR160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S2194.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPR160 MUTATED 4 1 0
GPR160 WILD-TYPE 117 36 86
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2195.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPR160 MUTATED 4 0 2
GPR160 WILD-TYPE 160 13 78
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S2196.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPR160 MUTATED 0 4 0 2
GPR160 WILD-TYPE 49 98 4 100
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2197.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPR160 MUTATED 0 6 2
GPR160 WILD-TYPE 26 173 82
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S2198.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPR160 MUTATED 1 4 3 0 0
GPR160 WILD-TYPE 68 54 109 1 49
'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.73

Table S2199.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPR160 MUTATED 1 2 2
GPR160 WILD-TYPE 17 96 93
'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2200.  Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPR160 MUTATED 0 1 2 2 0
GPR160 WILD-TYPE 17 33 88 67 1
'KIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.072

Table S2201.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIN MUTATED 0 0 11
KIN WILD-TYPE 80 55 141

Figure S702.  Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S2202.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIN MUTATED 8 1 1
KIN WILD-TYPE 113 36 85
'KIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S2203.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIN MUTATED 9 0 1
KIN WILD-TYPE 155 13 79
'KIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.26

Table S2204.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIN MUTATED 0 8 0 2
KIN WILD-TYPE 49 94 4 100
'KIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S2205.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIN MUTATED 0 11 0
KIN WILD-TYPE 26 168 84

Figure S703.  Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S2206.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIN MUTATED 1 7 3 0 0
KIN WILD-TYPE 68 51 109 1 49

Figure S704.  Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.27

Table S2207.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIN MUTATED 1 7 1
KIN WILD-TYPE 17 91 94
'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.28

Table S2208.  Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIN MUTATED 0 2 7 0 0
KIN WILD-TYPE 17 32 83 69 1
'SRCIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S2209.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SRCIN1 MUTATED 3 1 9
SRCIN1 WILD-TYPE 77 54 143
'SRCIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S2210.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SRCIN1 MUTATED 7 1 2
SRCIN1 WILD-TYPE 114 36 84
'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S2211.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SRCIN1 MUTATED 11 0 1
SRCIN1 WILD-TYPE 153 13 79
'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00348 (Fisher's exact test), Q value = 0.056

Table S2212.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SRCIN1 MUTATED 0 11 0 1
SRCIN1 WILD-TYPE 49 91 4 101

Figure S705.  Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S2213.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SRCIN1 MUTATED 1 10 2
SRCIN1 WILD-TYPE 25 169 82
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00459 (Fisher's exact test), Q value = 0.066

Table S2214.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SRCIN1 MUTATED 3 8 1 0 1
SRCIN1 WILD-TYPE 66 50 111 1 48

Figure S706.  Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.58

Table S2215.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SRCIN1 MUTATED 0 7 3
SRCIN1 WILD-TYPE 18 91 92
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S2216.  Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SRCIN1 MUTATED 0 4 4 2 0
SRCIN1 WILD-TYPE 17 30 86 67 1
'KDELR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S2217.  Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KDELR3 MUTATED 0 1 2
KDELR3 WILD-TYPE 80 54 150
'KDELR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S2218.  Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KDELR3 MUTATED 2 1 0
KDELR3 WILD-TYPE 119 36 86
'KDELR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S2219.  Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KDELR3 MUTATED 1 2 0
KDELR3 WILD-TYPE 25 177 84
'KDELR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S2220.  Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KDELR3 MUTATED 1 2 0 0 0
KDELR3 WILD-TYPE 68 56 112 1 49
'KDELR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S2221.  Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KDELR3 MUTATED 1 1 1
KDELR3 WILD-TYPE 17 97 94
'KDELR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S2222.  Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KDELR3 MUTATED 1 0 2 0 0
KDELR3 WILD-TYPE 16 34 88 69 1
'FBXO48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.6

Table S2223.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FBXO48 MUTATED 0 0 3
FBXO48 WILD-TYPE 80 55 149
'FBXO48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.57

Table S2224.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FBXO48 MUTATED 3 0 0
FBXO48 WILD-TYPE 118 37 86
'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S2225.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FBXO48 MUTATED 4 0 0
FBXO48 WILD-TYPE 160 13 80
'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S2226.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FBXO48 MUTATED 0 4 0 0
FBXO48 WILD-TYPE 49 98 4 102
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S2227.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FBXO48 MUTATED 0 4 0
FBXO48 WILD-TYPE 26 175 84
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 0.29

Table S2228.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FBXO48 MUTATED 0 3 1 0 0
FBXO48 WILD-TYPE 69 55 111 1 49
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S2229.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FBXO48 MUTATED 0 3 0
FBXO48 WILD-TYPE 18 95 95
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.35

Table S2230.  Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FBXO48 MUTATED 0 2 1 0 0
FBXO48 WILD-TYPE 17 32 89 69 1
'TBC1D22B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S2231.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TBC1D22B MUTATED 0 1 6
TBC1D22B WILD-TYPE 80 54 146
'TBC1D22B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.23

Table S2232.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TBC1D22B MUTATED 6 0 0
TBC1D22B WILD-TYPE 115 37 86
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.86

Table S2233.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TBC1D22B MUTATED 5 0 1
TBC1D22B WILD-TYPE 159 13 79
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S2234.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TBC1D22B MUTATED 0 5 0 1
TBC1D22B WILD-TYPE 49 97 4 101
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S2235.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TBC1D22B MUTATED 0 6 1
TBC1D22B WILD-TYPE 26 173 83
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S2236.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TBC1D22B MUTATED 0 4 2 0 1
TBC1D22B WILD-TYPE 69 54 110 1 48
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.64

Table S2237.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TBC1D22B MUTATED 0 4 1
TBC1D22B WILD-TYPE 18 94 94
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.64

Table S2238.  Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TBC1D22B MUTATED 0 2 2 1 0
TBC1D22B WILD-TYPE 17 32 88 68 1
'CDH16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S2239.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDH16 MUTATED 1 0 12
CDH16 WILD-TYPE 79 55 140

Figure S707.  Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.28

Table S2240.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDH16 MUTATED 9 0 2
CDH16 WILD-TYPE 112 37 84
'CDH16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.84

Table S2241.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDH16 MUTATED 9 0 2
CDH16 WILD-TYPE 155 13 78
'CDH16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.19

Table S2242.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDH16 MUTATED 0 9 0 2
CDH16 WILD-TYPE 49 93 4 100

Figure S708.  Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.27

Table S2243.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDH16 MUTATED 0 12 1
CDH16 WILD-TYPE 26 167 83
'CDH16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S2244.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDH16 MUTATED 2 6 4 0 1
CDH16 WILD-TYPE 67 52 108 1 48
'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S2245.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDH16 MUTATED 1 6 1
CDH16 WILD-TYPE 17 92 94
'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S2246.  Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDH16 MUTATED 0 3 5 0 0
CDH16 WILD-TYPE 17 31 85 69 1
'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.17

Table S2247.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GLT8D1 MUTATED 0 0 8
GLT8D1 WILD-TYPE 80 55 144

Figure S709.  Get High-res Image Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S2248.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GLT8D1 MUTATED 4 0 1
GLT8D1 WILD-TYPE 117 37 85
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S2249.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GLT8D1 MUTATED 5 0 3
GLT8D1 WILD-TYPE 159 13 77
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2250.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GLT8D1 MUTATED 0 4 0 4
GLT8D1 WILD-TYPE 49 98 4 98
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.28

Table S2251.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GLT8D1 MUTATED 0 8 0
GLT8D1 WILD-TYPE 26 171 84
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.27

Table S2252.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GLT8D1 MUTATED 0 4 4 0 0
GLT8D1 WILD-TYPE 69 54 108 1 49
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S2253.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GLT8D1 MUTATED 0 4 1
GLT8D1 WILD-TYPE 18 94 94
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S2254.  Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GLT8D1 MUTATED 0 0 5 0 0
GLT8D1 WILD-TYPE 17 34 85 69 1
'TAS2R42 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2255.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TAS2R42 MUTATED 1 1 2
TAS2R42 WILD-TYPE 79 54 150
'TAS2R42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S2256.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TAS2R42 MUTATED 2 1 1
TAS2R42 WILD-TYPE 119 36 85
'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2257.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TAS2R42 MUTATED 2 0 1
TAS2R42 WILD-TYPE 162 13 79
'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2258.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TAS2R42 MUTATED 0 1 0 2
TAS2R42 WILD-TYPE 49 101 4 100
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S2259.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TAS2R42 MUTATED 0 4 0
TAS2R42 WILD-TYPE 26 175 84
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S2260.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TAS2R42 MUTATED 2 0 2 0 0
TAS2R42 WILD-TYPE 67 58 110 1 49
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S2261.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TAS2R42 MUTATED 0 3 0
TAS2R42 WILD-TYPE 18 95 95
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S2262.  Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TAS2R42 MUTATED 0 2 1 0 0
TAS2R42 WILD-TYPE 17 32 89 69 1
'POP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S2263.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
POP1 MUTATED 3 4 11
POP1 WILD-TYPE 77 51 141
'POP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S2264.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
POP1 MUTATED 9 1 3
POP1 WILD-TYPE 112 36 83
'POP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.99

Table S2265.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
POP1 MUTATED 12 0 5
POP1 WILD-TYPE 152 13 75
'POP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.68

Table S2266.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
POP1 MUTATED 2 10 0 5
POP1 WILD-TYPE 47 92 4 97
'POP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.29

Table S2267.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
POP1 MUTATED 1 16 2
POP1 WILD-TYPE 25 163 82
'POP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S2268.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
POP1 MUTATED 3 9 7 0 0
POP1 WILD-TYPE 66 49 105 1 49

Figure S710.  Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S2269.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
POP1 MUTATED 1 8 3
POP1 WILD-TYPE 17 90 92
'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S2270.  Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
POP1 MUTATED 1 3 7 1 0
POP1 WILD-TYPE 16 31 83 68 1
'PIGO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.11

Table S2271.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIGO MUTATED 0 0 10
PIGO WILD-TYPE 80 55 142

Figure S711.  Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.18

Table S2272.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIGO MUTATED 9 0 1
PIGO WILD-TYPE 112 37 85

Figure S712.  Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2273.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIGO MUTATED 6 0 2
PIGO WILD-TYPE 158 13 78
'PIGO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S2274.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIGO MUTATED 0 6 0 2
PIGO WILD-TYPE 49 96 4 100
'PIGO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S2275.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIGO MUTATED 0 8 2
PIGO WILD-TYPE 26 171 82
'PIGO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 0.27

Table S2276.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIGO MUTATED 0 5 4 0 1
PIGO WILD-TYPE 69 53 108 1 48
'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S2277.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIGO MUTATED 1 6 1
PIGO WILD-TYPE 17 92 94
'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S2278.  Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIGO MUTATED 0 2 5 1 0
PIGO WILD-TYPE 17 32 85 68 1
'NEXN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S2279.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NEXN MUTATED 1 0 7
NEXN WILD-TYPE 79 55 145
'NEXN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.94

Table S2280.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NEXN MUTATED 4 0 2
NEXN WILD-TYPE 117 37 84
'NEXN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S2281.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NEXN MUTATED 4 1 1
NEXN WILD-TYPE 160 12 79
'NEXN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S2282.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NEXN MUTATED 0 4 0 2
NEXN WILD-TYPE 49 98 4 100
'NEXN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S2283.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NEXN MUTATED 1 7 0
NEXN WILD-TYPE 25 172 84
'NEXN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S2284.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NEXN MUTATED 1 3 4 0 0
NEXN WILD-TYPE 68 55 108 1 49
'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S2285.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NEXN MUTATED 1 3 2
NEXN WILD-TYPE 17 95 93
'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.45

Table S2286.  Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NEXN MUTATED 0 1 5 0 0
NEXN WILD-TYPE 17 33 85 69 1
'CLDN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.23

Table S2287.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CLDN6 MUTATED 0 0 7
CLDN6 WILD-TYPE 80 55 145
'CLDN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.23

Table S2288.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CLDN6 MUTATED 6 0 0
CLDN6 WILD-TYPE 115 37 86
'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.86

Table S2289.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CLDN6 MUTATED 5 0 1
CLDN6 WILD-TYPE 159 13 79
'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S2290.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CLDN6 MUTATED 0 5 0 1
CLDN6 WILD-TYPE 49 97 4 101
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S2291.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CLDN6 MUTATED 0 7 0
CLDN6 WILD-TYPE 26 172 84
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S2292.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CLDN6 MUTATED 1 4 2 0 0
CLDN6 WILD-TYPE 68 54 110 1 49
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S2293.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CLDN6 MUTATED 1 4 1
CLDN6 WILD-TYPE 17 94 94
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2294.  Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CLDN6 MUTATED 0 3 3 0 0
CLDN6 WILD-TYPE 17 31 87 69 1
'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.017

Table S2295.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MTIF2 MUTATED 0 0 15
MTIF2 WILD-TYPE 80 55 137

Figure S713.  Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S2296.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MTIF2 MUTATED 11 0 1
MTIF2 WILD-TYPE 110 37 85

Figure S714.  Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S2297.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MTIF2 MUTATED 10 1 2
MTIF2 WILD-TYPE 154 12 78
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S2298.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MTIF2 MUTATED 0 9 0 4
MTIF2 WILD-TYPE 49 93 4 98
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.59

Table S2299.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MTIF2 MUTATED 0 12 3
MTIF2 WILD-TYPE 26 167 81
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S2300.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MTIF2 MUTATED 1 5 8 0 1
MTIF2 WILD-TYPE 68 53 104 1 48
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S2301.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MTIF2 MUTATED 0 8 2
MTIF2 WILD-TYPE 18 90 93
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.69

Table S2302.  Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MTIF2 MUTATED 0 3 5 2 0
MTIF2 WILD-TYPE 17 31 85 67 1
'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.2

Table S2303.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HAUS6 MUTATED 1 0 10
HAUS6 WILD-TYPE 79 55 142

Figure S715.  Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S2304.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HAUS6 MUTATED 7 1 1
HAUS6 WILD-TYPE 114 36 85
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.56

Table S2305.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HAUS6 MUTATED 8 0 1
HAUS6 WILD-TYPE 156 13 79
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S2306.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HAUS6 MUTATED 1 7 0 1
HAUS6 WILD-TYPE 48 95 4 101
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S2307.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HAUS6 MUTATED 0 11 0
HAUS6 WILD-TYPE 26 168 84

Figure S716.  Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.23

Table S2308.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HAUS6 MUTATED 1 6 4 0 0
HAUS6 WILD-TYPE 68 52 108 1 49
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00805 (Fisher's exact test), Q value = 0.088

Table S2309.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HAUS6 MUTATED 2 7 0
HAUS6 WILD-TYPE 16 91 95

Figure S717.  Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.29

Table S2310.  Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HAUS6 MUTATED 1 1 7 0 0
HAUS6 WILD-TYPE 16 33 83 69 1
'PLEKHO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.23

Table S2311.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLEKHO1 MUTATED 0 0 7
PLEKHO1 WILD-TYPE 80 55 145
'PLEKHO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2312.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLEKHO1 MUTATED 3 0 2
PLEKHO1 WILD-TYPE 118 37 84
'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S2313.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLEKHO1 MUTATED 4 1 2
PLEKHO1 WILD-TYPE 160 12 78
'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S2314.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLEKHO1 MUTATED 0 3 0 4
PLEKHO1 WILD-TYPE 49 99 4 98
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S2315.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLEKHO1 MUTATED 0 7 0
PLEKHO1 WILD-TYPE 26 172 84
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S2316.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLEKHO1 MUTATED 0 2 5 0 0
PLEKHO1 WILD-TYPE 69 56 107 1 49
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S2317.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLEKHO1 MUTATED 1 3 0
PLEKHO1 WILD-TYPE 17 95 95
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S2318.  Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLEKHO1 MUTATED 0 1 3 0 0
PLEKHO1 WILD-TYPE 17 33 87 69 1
'ASPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S2319.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ASPN MUTATED 0 0 6
ASPN WILD-TYPE 80 55 146
'ASPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S2320.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ASPN MUTATED 5 0 0
ASPN WILD-TYPE 116 37 86
'ASPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.45

Table S2321.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ASPN MUTATED 6 0 0
ASPN WILD-TYPE 158 13 80
'ASPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.17

Table S2322.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ASPN MUTATED 0 6 0 0
ASPN WILD-TYPE 49 96 4 102

Figure S718.  Get High-res Image Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S2323.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ASPN MUTATED 0 6 0
ASPN WILD-TYPE 26 173 84
'ASPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.44

Table S2324.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ASPN MUTATED 1 0 5 0 0
ASPN WILD-TYPE 68 58 107 1 49
'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S2325.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ASPN MUTATED 1 3 0
ASPN WILD-TYPE 17 95 95
'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S2326.  Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ASPN MUTATED 0 0 4 0 0
ASPN WILD-TYPE 17 34 86 69 1
'HTR1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S2327.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HTR1E MUTATED 0 2 7
HTR1E WILD-TYPE 80 53 145
'HTR1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.24

Table S2328.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HTR1E MUTATED 6 2 0
HTR1E WILD-TYPE 115 35 86
'HTR1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.31

Table S2329.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HTR1E MUTATED 4 1 0
HTR1E WILD-TYPE 160 12 80
'HTR1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S2330.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HTR1E MUTATED 1 4 0 0
HTR1E WILD-TYPE 48 98 4 102
'HTR1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.64

Table S2331.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HTR1E MUTATED 1 7 1
HTR1E WILD-TYPE 25 172 83
'HTR1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S2332.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HTR1E MUTATED 1 4 4 0 0
HTR1E WILD-TYPE 68 54 108 1 49
'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.25

Table S2333.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HTR1E MUTATED 2 4 1
HTR1E WILD-TYPE 16 94 94
'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S2334.  Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HTR1E MUTATED 0 2 4 1 0
HTR1E WILD-TYPE 17 32 86 68 1
'KLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.56

Table S2335.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KLC2 MUTATED 1 2 8
KLC2 WILD-TYPE 79 53 144
'KLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S2336.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KLC2 MUTATED 5 2 2
KLC2 WILD-TYPE 116 35 84
'KLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S2337.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KLC2 MUTATED 7 0 0
KLC2 WILD-TYPE 157 13 80
'KLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S2338.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KLC2 MUTATED 0 7 0 0
KLC2 WILD-TYPE 49 95 4 102

Figure S719.  Get High-res Image Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.4

Table S2339.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KLC2 MUTATED 0 10 1
KLC2 WILD-TYPE 26 169 83
'KLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.067

Table S2340.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KLC2 MUTATED 0 7 4 0 0
KLC2 WILD-TYPE 69 51 108 1 49

Figure S720.  Get High-res Image Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S2341.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KLC2 MUTATED 0 5 2
KLC2 WILD-TYPE 18 93 93
'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S2342.  Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KLC2 MUTATED 0 2 4 1 0
KLC2 WILD-TYPE 17 32 86 68 1
'BMPR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.23

Table S2343.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BMPR1B MUTATED 0 0 7
BMPR1B WILD-TYPE 80 55 145
'BMPR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S2344.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BMPR1B MUTATED 5 0 0
BMPR1B WILD-TYPE 116 37 86
'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2345.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BMPR1B MUTATED 5 0 2
BMPR1B WILD-TYPE 159 13 78
'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S2346.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BMPR1B MUTATED 0 5 0 2
BMPR1B WILD-TYPE 49 97 4 100
'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S2347.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BMPR1B MUTATED 0 7 0
BMPR1B WILD-TYPE 26 172 84
'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S2348.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BMPR1B MUTATED 0 3 4 0 0
BMPR1B WILD-TYPE 69 55 108 1 49
'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S2349.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BMPR1B MUTATED 0 3 0
BMPR1B WILD-TYPE 18 95 95
'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.7

Table S2350.  Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BMPR1B MUTATED 0 1 2 0 0
BMPR1B WILD-TYPE 17 33 88 69 1
'PAPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.17

Table S2351.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PAPD4 MUTATED 0 0 8
PAPD4 WILD-TYPE 80 55 144

Figure S721.  Get High-res Image Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.26

Table S2352.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PAPD4 MUTATED 6 1 0
PAPD4 WILD-TYPE 115 36 86
'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S2353.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PAPD4 MUTATED 7 0 0
PAPD4 WILD-TYPE 157 13 80
'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S2354.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PAPD4 MUTATED 0 7 0 0
PAPD4 WILD-TYPE 49 95 4 102

Figure S722.  Get High-res Image Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S2355.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PAPD4 MUTATED 0 7 1
PAPD4 WILD-TYPE 26 172 83
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S2356.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PAPD4 MUTATED 0 2 5 0 1
PAPD4 WILD-TYPE 69 56 107 1 48
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S2357.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PAPD4 MUTATED 1 4 1
PAPD4 WILD-TYPE 17 94 94
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.9

Table S2358.  Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PAPD4 MUTATED 0 1 4 1 0
PAPD4 WILD-TYPE 17 33 86 68 1
'KIAA1009 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S2359.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1009 MUTATED 3 1 11
KIAA1009 WILD-TYPE 77 54 141
'KIAA1009 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.19

Table S2360.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1009 MUTATED 10 3 1
KIAA1009 WILD-TYPE 111 34 85

Figure S723.  Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S2361.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1009 MUTATED 12 1 2
KIAA1009 WILD-TYPE 152 12 78
'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.26

Table S2362.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1009 MUTATED 1 11 0 3
KIAA1009 WILD-TYPE 48 91 4 99
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S2363.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1009 MUTATED 1 12 2
KIAA1009 WILD-TYPE 25 167 82
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.26

Table S2364.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1009 MUTATED 3 7 5 0 0
KIAA1009 WILD-TYPE 66 51 107 1 49
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S2365.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1009 MUTATED 0 9 3
KIAA1009 WILD-TYPE 18 89 92
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S2366.  Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1009 MUTATED 0 3 8 1 0
KIAA1009 WILD-TYPE 17 31 82 68 1
'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00427 (Fisher's exact test), Q value = 0.063

Table S2367.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C5ORF42 MUTATED 2 2 21
C5ORF42 WILD-TYPE 78 53 131

Figure S724.  Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.021

Table S2368.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C5ORF42 MUTATED 19 3 1
C5ORF42 WILD-TYPE 102 34 85

Figure S725.  Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.061

Table S2369.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C5ORF42 MUTATED 20 2 1
C5ORF42 WILD-TYPE 144 11 79

Figure S726.  Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.034

Table S2370.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C5ORF42 MUTATED 2 17 1 3
C5ORF42 WILD-TYPE 47 85 3 99

Figure S727.  Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S2371.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C5ORF42 MUTATED 1 21 4
C5ORF42 WILD-TYPE 25 158 80
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00651 (Fisher's exact test), Q value = 0.08

Table S2372.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C5ORF42 MUTATED 2 11 12 0 1
C5ORF42 WILD-TYPE 67 47 100 1 48

Figure S728.  Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.7

Table S2373.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C5ORF42 MUTATED 1 12 7
C5ORF42 WILD-TYPE 17 86 88
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S2374.  Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C5ORF42 MUTATED 1 6 10 3 0
C5ORF42 WILD-TYPE 16 28 80 66 1
'YBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.68

Table S2375.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
YBX2 MUTATED 0 1 3
YBX2 WILD-TYPE 80 54 149
'YBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.57

Table S2376.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
YBX2 MUTATED 3 0 0
YBX2 WILD-TYPE 118 37 86
'YBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.74

Table S2377.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
YBX2 MUTATED 3 0 0
YBX2 WILD-TYPE 161 13 80
'YBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S2378.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
YBX2 MUTATED 0 3 0 0
YBX2 WILD-TYPE 49 99 4 102
'YBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2379.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
YBX2 MUTATED 0 4 0
YBX2 WILD-TYPE 26 175 84
'YBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S2380.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
YBX2 MUTATED 0 4 0 0 0
YBX2 WILD-TYPE 69 54 112 1 49

Figure S729.  Get High-res Image Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S2381.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
YBX2 MUTATED 0 3 0
YBX2 WILD-TYPE 18 95 95
'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.35

Table S2382.  Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
YBX2 MUTATED 0 2 1 0 0
YBX2 WILD-TYPE 17 32 89 69 1
'SH3KBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S2383.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SH3KBP1 MUTATED 0 2 11
SH3KBP1 WILD-TYPE 80 53 141

Figure S730.  Get High-res Image Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S2384.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SH3KBP1 MUTATED 7 1 1
SH3KBP1 WILD-TYPE 114 36 85
'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S2385.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SH3KBP1 MUTATED 7 1 2
SH3KBP1 WILD-TYPE 157 12 78
'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.18

Table S2386.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SH3KBP1 MUTATED 0 7 1 2
SH3KBP1 WILD-TYPE 49 95 3 100

Figure S731.  Get High-res Image Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S2387.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SH3KBP1 MUTATED 0 11 2
SH3KBP1 WILD-TYPE 26 168 82
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.35

Table S2388.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SH3KBP1 MUTATED 1 6 5 0 1
SH3KBP1 WILD-TYPE 68 52 107 1 48
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S2389.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SH3KBP1 MUTATED 1 5 1
SH3KBP1 WILD-TYPE 17 93 94
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S2390.  Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SH3KBP1 MUTATED 0 3 3 1 0
SH3KBP1 WILD-TYPE 17 31 87 68 1
'USP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S2391.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
USP15 MUTATED 0 0 6
USP15 WILD-TYPE 80 55 146
'USP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2392.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
USP15 MUTATED 3 0 2
USP15 WILD-TYPE 118 37 84
'USP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.58

Table S2393.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
USP15 MUTATED 4 1 1
USP15 WILD-TYPE 160 12 79
'USP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S2394.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
USP15 MUTATED 0 3 0 3
USP15 WILD-TYPE 49 99 4 99
'USP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S2395.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
USP15 MUTATED 0 6 0
USP15 WILD-TYPE 26 173 84
'USP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S2396.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
USP15 MUTATED 0 3 3 0 0
USP15 WILD-TYPE 69 55 109 1 49
'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S2397.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
USP15 MUTATED 0 3 1
USP15 WILD-TYPE 18 95 94
'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S2398.  Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
USP15 MUTATED 0 1 3 0 0
USP15 WILD-TYPE 17 33 87 69 1
'IGF2BP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S2399.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IGF2BP3 MUTATED 0 1 3
IGF2BP3 WILD-TYPE 80 54 149
'IGF2BP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S2400.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IGF2BP3 MUTATED 4 0 0
IGF2BP3 WILD-TYPE 117 37 86
'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2401.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IGF2BP3 MUTATED 4 0 1
IGF2BP3 WILD-TYPE 160 13 79
'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S2402.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IGF2BP3 MUTATED 0 4 0 1
IGF2BP3 WILD-TYPE 49 98 4 101
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S2403.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IGF2BP3 MUTATED 0 5 0
IGF2BP3 WILD-TYPE 26 174 84
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S2404.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IGF2BP3 MUTATED 0 3 2 0 0
IGF2BP3 WILD-TYPE 69 55 110 1 49
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.29

Table S2405.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IGF2BP3 MUTATED 1 3 0
IGF2BP3 WILD-TYPE 17 95 95
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S2406.  Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IGF2BP3 MUTATED 0 1 3 0 0
IGF2BP3 WILD-TYPE 17 33 87 69 1
'PLXNA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.096

Table S2407.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLXNA2 MUTATED 1 3 18
PLXNA2 WILD-TYPE 79 52 134

Figure S732.  Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLXNA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S2408.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLXNA2 MUTATED 14 0 4
PLXNA2 WILD-TYPE 107 37 82

Figure S733.  Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.6

Table S2409.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLXNA2 MUTATED 13 1 3
PLXNA2 WILD-TYPE 151 12 77
'PLXNA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.27

Table S2410.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLXNA2 MUTATED 1 12 0 4
PLXNA2 WILD-TYPE 48 90 4 98
'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00548 (Fisher's exact test), Q value = 0.072

Table S2411.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLXNA2 MUTATED 1 21 1
PLXNA2 WILD-TYPE 25 158 83

Figure S734.  Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.03

Table S2412.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLXNA2 MUTATED 3 13 6 0 1
PLXNA2 WILD-TYPE 66 45 106 1 48

Figure S735.  Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S2413.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLXNA2 MUTATED 2 11 2
PLXNA2 WILD-TYPE 16 87 93

Figure S736.  Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S2414.  Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLXNA2 MUTATED 0 5 8 2 0
PLXNA2 WILD-TYPE 17 29 82 67 1
'MOCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.67

Table S2415.  Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MOCS2 MUTATED 0 1 3
MOCS2 WILD-TYPE 80 54 149
'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S2416.  Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MOCS2 MUTATED 2 0 2
MOCS2 WILD-TYPE 162 13 78
'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2417.  Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MOCS2 MUTATED 0 2 0 2
MOCS2 WILD-TYPE 49 100 4 100
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S2418.  Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MOCS2 MUTATED 0 4 0
MOCS2 WILD-TYPE 26 175 84
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S2419.  Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MOCS2 MUTATED 0 2 2 0 0
MOCS2 WILD-TYPE 69 56 110 1 49
'PIK3R3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S2420.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIK3R3 MUTATED 1 1 6
PIK3R3 WILD-TYPE 79 54 146
'PIK3R3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.94

Table S2421.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIK3R3 MUTATED 4 0 2
PIK3R3 WILD-TYPE 117 37 84
'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.49

Table S2422.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIK3R3 MUTATED 5 1 1
PIK3R3 WILD-TYPE 159 12 79
'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S2423.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIK3R3 MUTATED 1 3 1 2
PIK3R3 WILD-TYPE 48 99 3 100
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2424.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIK3R3 MUTATED 0 6 2
PIK3R3 WILD-TYPE 26 173 82
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S2425.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIK3R3 MUTATED 0 0 8 0 0
PIK3R3 WILD-TYPE 69 58 104 1 49

Figure S737.  Get High-res Image Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.49

Table S2426.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIK3R3 MUTATED 1 3 1
PIK3R3 WILD-TYPE 17 95 94
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S2427.  Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIK3R3 MUTATED 0 1 3 1 0
PIK3R3 WILD-TYPE 17 33 87 68 1
'CR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0079

Table S2428.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CR1 MUTATED 2 0 23
CR1 WILD-TYPE 78 55 129

Figure S738.  Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S2429.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CR1 MUTATED 13 2 4
CR1 WILD-TYPE 108 35 82
'CR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.2

Table S2430.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CR1 MUTATED 21 0 3
CR1 WILD-TYPE 143 13 77

Figure S739.  Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0066

Table S2431.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CR1 MUTATED 0 20 0 4
CR1 WILD-TYPE 49 82 4 98

Figure S740.  Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.058

Table S2432.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CR1 MUTATED 0 23 2
CR1 WILD-TYPE 26 156 82

Figure S741.  Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.025

Table S2433.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CR1 MUTATED 1 12 11 0 1
CR1 WILD-TYPE 68 46 101 1 48

Figure S742.  Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.26

Table S2434.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CR1 MUTATED 0 12 4
CR1 WILD-TYPE 18 86 91
'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S2435.  Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CR1 MUTATED 0 3 11 2 0
CR1 WILD-TYPE 17 31 79 67 1
'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S2436.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IL2RG MUTATED 0 0 6
IL2RG WILD-TYPE 80 55 146
'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S2437.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IL2RG MUTATED 5 0 0
IL2RG WILD-TYPE 116 37 86
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2438.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IL2RG MUTATED 3 0 1
IL2RG WILD-TYPE 161 13 79
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S2439.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IL2RG MUTATED 0 3 0 1
IL2RG WILD-TYPE 49 99 4 101
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.91

Table S2440.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IL2RG MUTATED 0 5 1
IL2RG WILD-TYPE 26 174 83
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S2441.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IL2RG MUTATED 0 2 4 0 0
IL2RG WILD-TYPE 69 56 108 1 49
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.49

Table S2442.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IL2RG MUTATED 1 3 1
IL2RG WILD-TYPE 17 95 94
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.98

Table S2443.  Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IL2RG MUTATED 0 1 3 1 0
IL2RG WILD-TYPE 17 33 87 68 1
'FAM70B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.12

Table S2444.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM70B MUTATED 1 0 12
FAM70B WILD-TYPE 79 55 140

Figure S743.  Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM70B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.27

Table S2445.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM70B MUTATED 8 0 1
FAM70B WILD-TYPE 113 37 85
'FAM70B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S2446.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM70B MUTATED 10 0 2
FAM70B WILD-TYPE 154 13 78
'FAM70B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.16

Table S2447.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM70B MUTATED 0 10 0 2
FAM70B WILD-TYPE 49 92 4 100

Figure S744.  Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.27

Table S2448.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM70B MUTATED 0 12 1
FAM70B WILD-TYPE 26 167 83
'FAM70B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.041

Table S2449.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM70B MUTATED 0 8 5 0 0
FAM70B WILD-TYPE 69 50 107 1 49

Figure S745.  Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.19

Table S2450.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM70B MUTATED 1 6 0
FAM70B WILD-TYPE 17 92 95

Figure S746.  Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2451.  Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM70B MUTATED 0 2 5 0 0
FAM70B WILD-TYPE 17 32 85 69 1
'COL12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.18

Table S2452.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
COL12A1 MUTATED 8 5 32
COL12A1 WILD-TYPE 72 50 120

Figure S747.  Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.15

Table S2453.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
COL12A1 MUTATED 26 4 7
COL12A1 WILD-TYPE 95 33 79

Figure S748.  Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.45

Table S2454.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
COL12A1 MUTATED 31 1 9
COL12A1 WILD-TYPE 133 12 71
'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S2455.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
COL12A1 MUTATED 3 25 0 13
COL12A1 WILD-TYPE 46 77 4 89

Figure S749.  Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.18

Table S2456.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
COL12A1 MUTATED 1 36 9
COL12A1 WILD-TYPE 25 143 75

Figure S750.  Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.014

Table S2457.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
COL12A1 MUTATED 10 20 14 0 2
COL12A1 WILD-TYPE 59 38 98 1 47

Figure S751.  Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.11

Table S2458.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
COL12A1 MUTATED 3 25 9
COL12A1 WILD-TYPE 15 73 86

Figure S752.  Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.22

Table S2459.  Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
COL12A1 MUTATED 2 12 15 8 0
COL12A1 WILD-TYPE 15 22 75 61 1
'NFE2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S2460.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NFE2L1 MUTATED 0 2 7
NFE2L1 WILD-TYPE 80 53 145
'NFE2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.82

Table S2461.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NFE2L1 MUTATED 3 1 1
NFE2L1 WILD-TYPE 118 36 85
'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.56

Table S2462.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NFE2L1 MUTATED 8 0 1
NFE2L1 WILD-TYPE 156 13 79
'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.17

Table S2463.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NFE2L1 MUTATED 0 8 0 1
NFE2L1 WILD-TYPE 49 94 4 101

Figure S753.  Get High-res Image Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S2464.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NFE2L1 MUTATED 0 8 1
NFE2L1 WILD-TYPE 26 171 83
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S2465.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NFE2L1 MUTATED 1 6 2 0 0
NFE2L1 WILD-TYPE 68 52 110 1 49

Figure S754.  Get High-res Image Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S2466.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NFE2L1 MUTATED 0 3 1
NFE2L1 WILD-TYPE 18 95 94
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S2467.  Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NFE2L1 MUTATED 0 2 1 1 0
NFE2L1 WILD-TYPE 17 32 89 68 1
'TCHP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.27

Table S2468.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TCHP MUTATED 1 0 9
TCHP WILD-TYPE 79 55 143
'TCHP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S2469.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TCHP MUTATED 5 0 2
TCHP WILD-TYPE 116 37 84
'TCHP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S2470.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TCHP MUTATED 6 1 2
TCHP WILD-TYPE 158 12 78
'TCHP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2471.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TCHP MUTATED 2 4 0 3
TCHP WILD-TYPE 47 98 4 99
'TCHP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S2472.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TCHP MUTATED 0 9 1
TCHP WILD-TYPE 26 170 83
'TCHP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S2473.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TCHP MUTATED 1 5 4 0 0
TCHP WILD-TYPE 68 53 108 1 49
'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S2474.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TCHP MUTATED 1 4 2
TCHP WILD-TYPE 17 94 93
'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.22

Table S2475.  Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TCHP MUTATED 2 0 5 0 0
TCHP WILD-TYPE 15 34 85 69 1
'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.95

Table S2476.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WNT1 MUTATED 1 1 5
WNT1 WILD-TYPE 79 54 147
'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.24

Table S2477.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WNT1 MUTATED 6 2 0
WNT1 WILD-TYPE 115 35 86
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S2478.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WNT1 MUTATED 7 0 1
WNT1 WILD-TYPE 157 13 79
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S2479.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WNT1 MUTATED 1 6 0 1
WNT1 WILD-TYPE 48 96 4 101
'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S2480.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WNT1 MUTATED 0 7 1
WNT1 WILD-TYPE 26 172 83
'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.68

Table S2481.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WNT1 MUTATED 2 3 3 0 0
WNT1 WILD-TYPE 67 55 109 1 49
'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S2482.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WNT1 MUTATED 0 6 1
WNT1 WILD-TYPE 18 92 94
'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2483.  Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WNT1 MUTATED 0 2 5 0 0
WNT1 WILD-TYPE 17 32 85 69 1
'UBC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S2484.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
UBC MUTATED 0 1 7
UBC WILD-TYPE 80 54 145
'UBC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.63

Table S2485.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
UBC MUTATED 4 0 1
UBC WILD-TYPE 117 37 85
'UBC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S2486.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
UBC MUTATED 5 0 0
UBC WILD-TYPE 159 13 80
'UBC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.24

Table S2487.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
UBC MUTATED 0 5 0 0
UBC WILD-TYPE 49 97 4 102
'UBC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S2488.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UBC MUTATED 0 7 1
UBC WILD-TYPE 26 172 83
'UBC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.22

Table S2489.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UBC MUTATED 0 5 2 0 1
UBC WILD-TYPE 69 53 110 1 48
'UBC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2490.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
UBC MUTATED 0 3 2
UBC WILD-TYPE 18 95 93
'UBC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.98

Table S2491.  Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
UBC MUTATED 0 1 3 1 0
UBC WILD-TYPE 17 33 87 68 1
'XK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.82

Table S2492.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
XK MUTATED 2 0 3
XK WILD-TYPE 78 55 149
'XK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S2493.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
XK MUTATED 1 1 1
XK WILD-TYPE 120 36 85
'XK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S2494.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
XK MUTATED 3 1 1
XK WILD-TYPE 161 12 79
'XK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.94

Table S2495.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
XK MUTATED 0 3 0 2
XK WILD-TYPE 49 99 4 100
'XK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.72

Table S2496.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
XK MUTATED 1 3 1
XK WILD-TYPE 25 176 83
'XK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S2497.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
XK MUTATED 1 2 1 0 1
XK WILD-TYPE 68 56 111 1 48
'XK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2498.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
XK MUTATED 0 2 1
XK WILD-TYPE 18 96 94
'XK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.91

Table S2499.  Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
XK MUTATED 0 1 1 1 0
XK WILD-TYPE 17 33 89 68 1
'CTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.6

Table S2500.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CTSA MUTATED 0 0 3
CTSA WILD-TYPE 80 55 149
'CTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.85

Table S2501.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CTSA MUTATED 1 0 2
CTSA WILD-TYPE 120 37 84
'CTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S2502.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CTSA MUTATED 2 1 1
CTSA WILD-TYPE 162 12 79
'CTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2503.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CTSA MUTATED 0 2 0 2
CTSA WILD-TYPE 49 100 4 100
'CTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2504.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CTSA MUTATED 0 3 1
CTSA WILD-TYPE 26 176 83
'CTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.5

Table S2505.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CTSA MUTATED 0 2 1 0 1
CTSA WILD-TYPE 69 56 111 1 48
'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2506.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CTSA MUTATED 0 2 1
CTSA WILD-TYPE 18 96 94
'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.91

Table S2507.  Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CTSA MUTATED 0 1 1 1 0
CTSA WILD-TYPE 17 33 89 68 1
'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S2508.  Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TMEM41B MUTATED 0 1 3
TMEM41B WILD-TYPE 80 54 149
'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S2509.  Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TMEM41B MUTATED 2 1 0
TMEM41B WILD-TYPE 119 36 86
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2510.  Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TMEM41B MUTATED 0 3 1
TMEM41B WILD-TYPE 26 176 83
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.23

Table S2511.  Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TMEM41B MUTATED 1 3 0 0 0
TMEM41B WILD-TYPE 68 55 112 1 49
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2512.  Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TMEM41B MUTATED 0 2 1
TMEM41B WILD-TYPE 18 96 94
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.25

Table S2513.  Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TMEM41B MUTATED 0 2 0 1 0
TMEM41B WILD-TYPE 17 32 90 68 1
'ENTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S2514.  Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ENTPD2 MUTATED 0 0 4
ENTPD2 WILD-TYPE 80 55 148
'ENTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.57

Table S2515.  Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ENTPD2 MUTATED 3 0 0
ENTPD2 WILD-TYPE 118 37 86
'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2516.  Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ENTPD2 MUTATED 3 0 1
ENTPD2 WILD-TYPE 161 13 79
'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2517.  Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ENTPD2 MUTATED 0 2 0 2
ENTPD2 WILD-TYPE 49 100 4 100
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2518.  Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ENTPD2 MUTATED 0 4 0
ENTPD2 WILD-TYPE 26 175 84
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.22

Table S2519.  Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ENTPD2 MUTATED 1 3 0 0 0
ENTPD2 WILD-TYPE 68 55 112 1 49
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S2520.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IRS4 MUTATED 3 1 19
IRS4 WILD-TYPE 77 54 133

Figure S755.  Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00501 (Fisher's exact test), Q value = 0.069

Table S2521.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IRS4 MUTATED 15 3 1
IRS4 WILD-TYPE 106 34 85

Figure S756.  Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S2522.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IRS4 MUTATED 17 0 4
IRS4 WILD-TYPE 147 13 76
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S2523.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IRS4 MUTATED 2 14 0 5
IRS4 WILD-TYPE 47 88 4 97
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S2524.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IRS4 MUTATED 1 19 3
IRS4 WILD-TYPE 25 160 81
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.23

Table S2525.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IRS4 MUTATED 2 10 8 0 3
IRS4 WILD-TYPE 67 48 104 1 46
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S2526.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IRS4 MUTATED 1 10 5
IRS4 WILD-TYPE 17 88 90
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S2527.  Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IRS4 MUTATED 1 4 9 2 0
IRS4 WILD-TYPE 16 30 81 67 1
'EVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.23

Table S2528.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EVL MUTATED 0 0 7
EVL WILD-TYPE 80 55 145
'EVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S2529.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EVL MUTATED 3 0 1
EVL WILD-TYPE 118 37 85
'EVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S2530.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EVL MUTATED 3 1 2
EVL WILD-TYPE 161 12 78
'EVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2531.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EVL MUTATED 0 3 1 2
EVL WILD-TYPE 49 99 3 100
'EVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2532.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EVL MUTATED 0 5 2
EVL WILD-TYPE 26 174 82
'EVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S2533.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EVL MUTATED 0 2 4 0 1
EVL WILD-TYPE 69 56 108 1 48
'EVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2534.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EVL MUTATED 0 2 1
EVL WILD-TYPE 18 96 94
'EVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2535.  Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EVL MUTATED 0 0 2 1 0
EVL WILD-TYPE 17 34 88 68 1
'OR5M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S2536.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OR5M3 MUTATED 1 3 11
OR5M3 WILD-TYPE 79 52 141
'OR5M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S2537.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OR5M3 MUTATED 9 2 2
OR5M3 WILD-TYPE 112 35 84
'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.25

Table S2538.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OR5M3 MUTATED 13 0 1
OR5M3 WILD-TYPE 151 13 79
'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S2539.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OR5M3 MUTATED 2 11 0 1
OR5M3 WILD-TYPE 47 91 4 101

Figure S757.  Get High-res Image Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.27

Table S2540.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OR5M3 MUTATED 2 12 1
OR5M3 WILD-TYPE 24 167 83
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S2541.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OR5M3 MUTATED 3 7 4 0 1
OR5M3 WILD-TYPE 66 51 108 1 48
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S2542.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OR5M3 MUTATED 2 7 2
OR5M3 WILD-TYPE 16 91 93
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.39

Table S2543.  Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OR5M3 MUTATED 2 3 5 1 0
OR5M3 WILD-TYPE 15 31 85 68 1
'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.17

Table S2544.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MYEOV MUTATED 0 0 8
MYEOV WILD-TYPE 80 55 144

Figure S758.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S2545.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MYEOV MUTATED 7 0 0
MYEOV WILD-TYPE 114 37 86

Figure S759.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2546.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MYEOV MUTATED 8 0 0
MYEOV WILD-TYPE 156 13 80
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00678 (Fisher's exact test), Q value = 0.082

Table S2547.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MYEOV MUTATED 0 8 0 0
MYEOV WILD-TYPE 49 94 4 102

Figure S760.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.28

Table S2548.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MYEOV MUTATED 0 8 0
MYEOV WILD-TYPE 26 171 84
'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.19

Table S2549.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MYEOV MUTATED 0 5 3 0 0
MYEOV WILD-TYPE 69 53 109 1 49

Figure S761.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.22

Table S2550.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MYEOV MUTATED 1 5 0
MYEOV WILD-TYPE 17 93 95
'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.45

Table S2551.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MYEOV MUTATED 0 1 5 0 0
MYEOV WILD-TYPE 17 33 85 69 1
'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.17

Table S2552.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C15ORF52 MUTATED 0 0 8
C15ORF52 WILD-TYPE 80 55 144

Figure S762.  Get High-res Image Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.23

Table S2553.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C15ORF52 MUTATED 6 0 0
C15ORF52 WILD-TYPE 115 37 86
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2554.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C15ORF52 MUTATED 6 0 2
C15ORF52 WILD-TYPE 158 13 78
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S2555.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C15ORF52 MUTATED 0 6 0 2
C15ORF52 WILD-TYPE 49 96 4 100
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.28

Table S2556.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C15ORF52 MUTATED 0 8 0
C15ORF52 WILD-TYPE 26 171 84
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S2557.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C15ORF52 MUTATED 0 3 5 0 0
C15ORF52 WILD-TYPE 69 55 107 1 49
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.2

Table S2558.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C15ORF52 MUTATED 0 6 0
C15ORF52 WILD-TYPE 18 92 95

Figure S763.  Get High-res Image Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S2559.  Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C15ORF52 MUTATED 0 2 4 0 0
C15ORF52 WILD-TYPE 17 32 86 69 1
'PKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.18

Table S2560.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PKN2 MUTATED 0 1 9
PKN2 WILD-TYPE 80 54 143

Figure S764.  Get High-res Image Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.5

Table S2561.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PKN2 MUTATED 7 0 2
PKN2 WILD-TYPE 114 37 84
'PKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S2562.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PKN2 MUTATED 7 0 1
PKN2 WILD-TYPE 157 13 79
'PKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S2563.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PKN2 MUTATED 0 6 0 2
PKN2 WILD-TYPE 49 96 4 100
'PKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S2564.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PKN2 MUTATED 0 8 2
PKN2 WILD-TYPE 26 171 82
'PKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.27

Table S2565.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PKN2 MUTATED 0 5 4 0 1
PKN2 WILD-TYPE 69 53 108 1 48
'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.86

Table S2566.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PKN2 MUTATED 1 4 3
PKN2 WILD-TYPE 17 94 92
'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 0.28

Table S2567.  Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PKN2 MUTATED 0 4 1 3 0
PKN2 WILD-TYPE 17 30 89 66 1
'IPO11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 0.072

Table S2568.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IPO11 MUTATED 0 0 11
IPO11 WILD-TYPE 80 55 141

Figure S765.  Get High-res Image Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IPO11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.27

Table S2569.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IPO11 MUTATED 8 0 1
IPO11 WILD-TYPE 113 37 85
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.84

Table S2570.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IPO11 MUTATED 9 0 2
IPO11 WILD-TYPE 155 13 78
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.87

Table S2571.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IPO11 MUTATED 1 6 0 4
IPO11 WILD-TYPE 48 96 4 98
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S2572.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IPO11 MUTATED 0 10 2
IPO11 WILD-TYPE 26 169 82
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.19

Table S2573.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IPO11 MUTATED 1 7 3 0 1
IPO11 WILD-TYPE 68 51 109 1 48

Figure S766.  Get High-res Image Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.95

Table S2574.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IPO11 MUTATED 0 5 3
IPO11 WILD-TYPE 18 93 92
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.51

Table S2575.  Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IPO11 MUTATED 0 3 4 1 0
IPO11 WILD-TYPE 17 31 86 68 1
'INTS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S2576.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
INTS12 MUTATED 0 1 5
INTS12 WILD-TYPE 80 54 147
'INTS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.91

Table S2577.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
INTS12 MUTATED 3 0 1
INTS12 WILD-TYPE 118 37 85
'INTS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S2578.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
INTS12 MUTATED 2 0 2
INTS12 WILD-TYPE 162 13 78
'INTS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2579.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
INTS12 MUTATED 0 2 0 2
INTS12 WILD-TYPE 49 100 4 100
'INTS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.91

Table S2580.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
INTS12 MUTATED 0 5 1
INTS12 WILD-TYPE 26 174 83
'INTS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.25

Table S2581.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
INTS12 MUTATED 0 4 2 0 0
INTS12 WILD-TYPE 69 54 110 1 49
'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S2582.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
INTS12 MUTATED 0 3 1
INTS12 WILD-TYPE 18 95 94
'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S2583.  Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
INTS12 MUTATED 0 2 1 1 0
INTS12 WILD-TYPE 17 32 89 68 1
'PGBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S2584.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PGBD1 MUTATED 0 1 11
PGBD1 WILD-TYPE 80 54 141

Figure S767.  Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.23

Table S2585.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PGBD1 MUTATED 7 1 0
PGBD1 WILD-TYPE 114 36 86
'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S2586.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PGBD1 MUTATED 9 0 1
PGBD1 WILD-TYPE 155 13 79
'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.26

Table S2587.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PGBD1 MUTATED 0 8 0 2
PGBD1 WILD-TYPE 49 94 4 100
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2588.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PGBD1 MUTATED 0 11 1
PGBD1 WILD-TYPE 26 168 83
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.03

Table S2589.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PGBD1 MUTATED 0 8 4 0 0
PGBD1 WILD-TYPE 69 50 108 1 49

Figure S768.  Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S2590.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PGBD1 MUTATED 0 6 1
PGBD1 WILD-TYPE 18 92 94
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S2591.  Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PGBD1 MUTATED 0 3 3 1 0
PGBD1 WILD-TYPE 17 31 87 68 1
'NCAPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S2592.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NCAPH MUTATED 2 0 7
NCAPH WILD-TYPE 78 55 145
'NCAPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.94

Table S2593.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NCAPH MUTATED 4 0 2
NCAPH WILD-TYPE 117 37 84
'NCAPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S2594.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NCAPH MUTATED 4 1 2
NCAPH WILD-TYPE 160 12 78
'NCAPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S2595.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NCAPH MUTATED 0 4 0 3
NCAPH WILD-TYPE 49 98 4 99
'NCAPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S2596.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NCAPH MUTATED 0 9 1
NCAPH WILD-TYPE 26 170 83
'NCAPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S2597.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NCAPH MUTATED 2 2 5 0 1
NCAPH WILD-TYPE 67 56 107 1 48
'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S2598.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NCAPH MUTATED 0 5 1
NCAPH WILD-TYPE 18 93 94
'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.9

Table S2599.  Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NCAPH MUTATED 0 1 4 1 0
NCAPH WILD-TYPE 17 33 86 68 1
'AQP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.23

Table S2600.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AQP8 MUTATED 0 2 9
AQP8 WILD-TYPE 80 53 143
'AQP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.5

Table S2601.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AQP8 MUTATED 7 0 2
AQP8 WILD-TYPE 114 37 84
'AQP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.56

Table S2602.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AQP8 MUTATED 8 0 1
AQP8 WILD-TYPE 156 13 79
'AQP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.17

Table S2603.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AQP8 MUTATED 0 8 0 1
AQP8 WILD-TYPE 49 94 4 101

Figure S769.  Get High-res Image Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S2604.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AQP8 MUTATED 0 9 2
AQP8 WILD-TYPE 26 170 82
'AQP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S2605.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AQP8 MUTATED 0 3 7 0 1
AQP8 WILD-TYPE 69 55 105 1 48
'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S2606.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AQP8 MUTATED 0 6 2
AQP8 WILD-TYPE 18 92 93
'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S2607.  Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AQP8 MUTATED 0 1 6 1 0
AQP8 WILD-TYPE 17 33 84 68 1
'EXO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.24

Table S2608.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EXO1 MUTATED 1 2 13
EXO1 WILD-TYPE 79 53 139
'EXO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00801 (Fisher's exact test), Q value = 0.088

Table S2609.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EXO1 MUTATED 12 0 1
EXO1 WILD-TYPE 109 37 85

Figure S770.  Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.42

Table S2610.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EXO1 MUTATED 13 0 2
EXO1 WILD-TYPE 151 13 78
'EXO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S2611.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EXO1 MUTATED 0 12 0 3
EXO1 WILD-TYPE 49 90 4 99

Figure S771.  Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S2612.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EXO1 MUTATED 0 14 2
EXO1 WILD-TYPE 26 165 82
'EXO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S2613.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EXO1 MUTATED 0 12 2 0 2
EXO1 WILD-TYPE 69 46 110 1 47

Figure S772.  Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S2614.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EXO1 MUTATED 0 8 4
EXO1 WILD-TYPE 18 90 91
'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S2615.  Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EXO1 MUTATED 0 2 8 2 0
EXO1 WILD-TYPE 17 32 82 67 1
'PRMT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.17

Table S2616.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRMT8 MUTATED 0 0 8
PRMT8 WILD-TYPE 80 55 144

Figure S773.  Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRMT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S2617.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRMT8 MUTATED 5 0 2
PRMT8 WILD-TYPE 116 37 84
'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S2618.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRMT8 MUTATED 4 1 2
PRMT8 WILD-TYPE 160 12 78
'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S2619.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRMT8 MUTATED 0 4 0 3
PRMT8 WILD-TYPE 49 98 4 99
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.28

Table S2620.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRMT8 MUTATED 0 8 0
PRMT8 WILD-TYPE 26 171 84
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.27

Table S2621.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRMT8 MUTATED 0 4 4 0 0
PRMT8 WILD-TYPE 69 54 108 1 49
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.15

Table S2622.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRMT8 MUTATED 0 7 0
PRMT8 WILD-TYPE 18 91 95

Figure S774.  Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.21

Table S2623.  Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRMT8 MUTATED 0 4 3 0 0
PRMT8 WILD-TYPE 17 30 87 69 1

Figure S775.  Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ACP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S2624.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ACP1 MUTATED 0 0 5
ACP1 WILD-TYPE 80 55 147
'ACP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S2625.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ACP1 MUTATED 4 0 0
ACP1 WILD-TYPE 117 37 86
'ACP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2626.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ACP1 MUTATED 3 0 1
ACP1 WILD-TYPE 161 13 79
'ACP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S2627.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ACP1 MUTATED 0 3 0 1
ACP1 WILD-TYPE 49 99 4 101
'ACP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S2628.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ACP1 MUTATED 0 5 0
ACP1 WILD-TYPE 26 174 84
'ACP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S2629.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ACP1 MUTATED 1 3 1 0 0
ACP1 WILD-TYPE 68 55 111 1 49
'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S2630.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ACP1 MUTATED 0 4 0
ACP1 WILD-TYPE 18 94 95
'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S2631.  Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ACP1 MUTATED 0 1 3 0 0
ACP1 WILD-TYPE 17 33 87 69 1
'ANKRD40 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2632.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ANKRD40 MUTATED 1 1 3
ANKRD40 WILD-TYPE 79 54 149
'ANKRD40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.91

Table S2633.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ANKRD40 MUTATED 3 0 1
ANKRD40 WILD-TYPE 118 37 85
'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S2634.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ANKRD40 MUTATED 3 1 1
ANKRD40 WILD-TYPE 161 12 79
'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.21

Table S2635.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ANKRD40 MUTATED 0 3 1 1
ANKRD40 WILD-TYPE 49 99 3 101

Figure S776.  Get High-res Image Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.89

Table S2636.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ANKRD40 MUTATED 0 3 2
ANKRD40 WILD-TYPE 26 176 82
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S2637.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ANKRD40 MUTATED 0 1 3 0 1
ANKRD40 WILD-TYPE 69 57 109 1 48
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2638.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ANKRD40 MUTATED 0 2 2
ANKRD40 WILD-TYPE 18 96 93
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S2639.  Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ANKRD40 MUTATED 0 2 1 1 0
ANKRD40 WILD-TYPE 17 32 89 68 1
'RBM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.046

Table S2640.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RBM6 MUTATED 1 1 18
RBM6 WILD-TYPE 79 54 134

Figure S777.  Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S2641.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RBM6 MUTATED 11 0 1
RBM6 WILD-TYPE 110 37 85

Figure S778.  Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.31

Table S2642.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RBM6 MUTATED 15 0 2
RBM6 WILD-TYPE 149 13 78
'RBM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.015

Table S2643.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RBM6 MUTATED 0 15 0 2
RBM6 WILD-TYPE 49 87 4 100

Figure S779.  Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S2644.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RBM6 MUTATED 1 18 1
RBM6 WILD-TYPE 25 161 83

Figure S780.  Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S2645.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RBM6 MUTATED 1 12 7 0 0
RBM6 WILD-TYPE 68 46 105 1 49

Figure S781.  Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.35

Table S2646.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RBM6 MUTATED 1 8 2
RBM6 WILD-TYPE 17 90 93
'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S2647.  Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RBM6 MUTATED 0 3 7 1 0
RBM6 WILD-TYPE 17 31 83 68 1
'SLC12A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.11

Table S2648.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC12A7 MUTATED 1 1 15
SLC12A7 WILD-TYPE 79 54 137

Figure S782.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.17

Table S2649.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC12A7 MUTATED 13 1 2
SLC12A7 WILD-TYPE 108 36 84

Figure S783.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S2650.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC12A7 MUTATED 13 0 3
SLC12A7 WILD-TYPE 151 13 77
'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.2

Table S2651.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC12A7 MUTATED 1 12 0 3
SLC12A7 WILD-TYPE 48 90 4 99

Figure S784.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.052

Table S2652.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC12A7 MUTATED 1 17 0
SLC12A7 WILD-TYPE 25 162 84

Figure S785.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.058

Table S2653.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC12A7 MUTATED 1 9 8 0 0
SLC12A7 WILD-TYPE 68 49 104 1 49

Figure S786.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.023

Table S2654.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC12A7 MUTATED 0 14 1
SLC12A7 WILD-TYPE 18 84 94

Figure S787.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.032

Table S2655.  Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC12A7 MUTATED 0 7 8 0 0
SLC12A7 WILD-TYPE 17 27 82 69 1

Figure S788.  Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.86

Table S2656.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ERBB2 MUTATED 3 2 9
ERBB2 WILD-TYPE 77 53 143
'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.46

Table S2657.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ERBB2 MUTATED 8 0 3
ERBB2 WILD-TYPE 113 37 83
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S2658.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ERBB2 MUTATED 10 1 2
ERBB2 WILD-TYPE 154 12 78
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S2659.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ERBB2 MUTATED 2 8 0 3
ERBB2 WILD-TYPE 47 94 4 99
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S2660.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ERBB2 MUTATED 2 10 2
ERBB2 WILD-TYPE 24 169 82
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.89

Table S2661.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ERBB2 MUTATED 2 4 6 0 2
ERBB2 WILD-TYPE 67 54 106 1 47
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S2662.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ERBB2 MUTATED 1 7 2
ERBB2 WILD-TYPE 17 91 93
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S2663.  Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ERBB2 MUTATED 0 2 6 2 0
ERBB2 WILD-TYPE 17 32 84 67 1
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.038

Table S2664.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CASP8 MUTATED 0 2 16
CASP8 WILD-TYPE 80 53 136

Figure S789.  Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S2665.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CASP8 MUTATED 9 1 3
CASP8 WILD-TYPE 112 36 83
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2666.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CASP8 MUTATED 12 1 5
CASP8 WILD-TYPE 152 12 75
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 0.27

Table S2667.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CASP8 MUTATED 0 11 0 7
CASP8 WILD-TYPE 49 91 4 95
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.23

Table S2668.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CASP8 MUTATED 0 16 2
CASP8 WILD-TYPE 26 163 82
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.28

Table S2669.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CASP8 MUTATED 2 8 7 0 1
CASP8 WILD-TYPE 67 50 105 1 48
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S2670.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CASP8 MUTATED 0 9 3
CASP8 WILD-TYPE 18 89 92
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.59

Table S2671.  Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CASP8 MUTATED 0 3 7 2 0
CASP8 WILD-TYPE 17 31 83 67 1
'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.24

Table S2672.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WHSC1L1 MUTATED 1 2 13
WHSC1L1 WILD-TYPE 79 53 139
'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.18

Table S2673.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WHSC1L1 MUTATED 9 0 1
WHSC1L1 WILD-TYPE 112 37 85

Figure S790.  Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S2674.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WHSC1L1 MUTATED 13 0 3
WHSC1L1 WILD-TYPE 151 13 77
'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.51

Table S2675.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WHSC1L1 MUTATED 1 10 0 5
WHSC1L1 WILD-TYPE 48 92 4 97
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.26

Table S2676.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WHSC1L1 MUTATED 1 14 1
WHSC1L1 WILD-TYPE 25 165 83
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.032

Table S2677.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WHSC1L1 MUTATED 2 10 4 0 0
WHSC1L1 WILD-TYPE 67 48 108 1 49

Figure S791.  Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.27

Table S2678.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WHSC1L1 MUTATED 0 7 1
WHSC1L1 WILD-TYPE 18 91 94
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2679.  Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WHSC1L1 MUTATED 1 1 6 0 0
WHSC1L1 WILD-TYPE 16 33 84 69 1
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S2680.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TBL1XR1 MUTATED 0 0 4
TBL1XR1 WILD-TYPE 80 55 148
'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.57

Table S2681.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TBL1XR1 MUTATED 3 0 0
TBL1XR1 WILD-TYPE 118 37 86
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2682.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TBL1XR1 MUTATED 4 0 1
TBL1XR1 WILD-TYPE 160 13 79
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S2683.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TBL1XR1 MUTATED 0 4 0 1
TBL1XR1 WILD-TYPE 49 98 4 101
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S2684.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TBL1XR1 MUTATED 0 5 0
TBL1XR1 WILD-TYPE 26 174 84
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S2685.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TBL1XR1 MUTATED 0 1 4 0 0
TBL1XR1 WILD-TYPE 69 57 108 1 49
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S2686.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TBL1XR1 MUTATED 0 3 0
TBL1XR1 WILD-TYPE 18 95 95
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.69

Table S2687.  Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TBL1XR1 MUTATED 0 1 2 0 0
TBL1XR1 WILD-TYPE 17 33 88 69 1
'NEK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S2688.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NEK7 MUTATED 0 0 4
NEK7 WILD-TYPE 80 55 148
'NEK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S2689.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NEK7 MUTATED 2 1 0
NEK7 WILD-TYPE 119 36 86
'NEK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S2690.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NEK7 MUTATED 4 0 0
NEK7 WILD-TYPE 160 13 80
'NEK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S2691.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NEK7 MUTATED 0 4 0 0
NEK7 WILD-TYPE 49 98 4 102
'NEK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2692.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NEK7 MUTATED 0 4 0
NEK7 WILD-TYPE 26 175 84
'NEK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.23

Table S2693.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NEK7 MUTATED 1 3 0 0 0
NEK7 WILD-TYPE 68 55 112 1 49
'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S2694.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NEK7 MUTATED 0 3 0
NEK7 WILD-TYPE 18 95 95
'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S2695.  Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NEK7 MUTATED 0 3 0 0 0
NEK7 WILD-TYPE 17 31 90 69 1

Figure S792.  Get High-res Image Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC148 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S2696.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CCDC148 MUTATED 0 1 4
CCDC148 WILD-TYPE 80 54 148
'CCDC148 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.63

Table S2697.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CCDC148 MUTATED 4 0 1
CCDC148 WILD-TYPE 117 37 85
'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S2698.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CCDC148 MUTATED 4 0 0
CCDC148 WILD-TYPE 160 13 80
'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S2699.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CCDC148 MUTATED 0 3 0 1
CCDC148 WILD-TYPE 49 99 4 101
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S2700.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CCDC148 MUTATED 0 5 0
CCDC148 WILD-TYPE 26 174 84
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S2701.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CCDC148 MUTATED 0 2 3 0 0
CCDC148 WILD-TYPE 69 56 109 1 49
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S2702.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CCDC148 MUTATED 0 3 1
CCDC148 WILD-TYPE 18 95 94
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S2703.  Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CCDC148 MUTATED 0 2 1 1 0
CCDC148 WILD-TYPE 17 32 89 68 1
'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.73

Table S2704.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ANKRD23 MUTATED 1 0 4
ANKRD23 WILD-TYPE 79 55 148
'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S2705.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ANKRD23 MUTATED 3 1 0
ANKRD23 WILD-TYPE 118 36 86
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2706.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ANKRD23 MUTATED 3 0 1
ANKRD23 WILD-TYPE 161 13 79
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 0.94

Table S2707.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ANKRD23 MUTATED 1 2 0 1
ANKRD23 WILD-TYPE 48 100 4 101
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.89

Table S2708.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ANKRD23 MUTATED 0 3 2
ANKRD23 WILD-TYPE 26 176 82
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S2709.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ANKRD23 MUTATED 1 1 3 0 0
ANKRD23 WILD-TYPE 68 57 109 1 49
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.85

Table S2710.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ANKRD23 MUTATED 0 3 1
ANKRD23 WILD-TYPE 18 95 94
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S2711.  Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ANKRD23 MUTATED 1 1 1 1 0
ANKRD23 WILD-TYPE 16 33 89 68 1
'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S2712.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BTBD11 MUTATED 1 3 16
BTBD11 WILD-TYPE 79 52 136

Figure S793.  Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.066

Table S2713.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BTBD11 MUTATED 13 0 1
BTBD11 WILD-TYPE 108 37 85

Figure S794.  Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S2714.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BTBD11 MUTATED 14 2 3
BTBD11 WILD-TYPE 150 11 77
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.39

Table S2715.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BTBD11 MUTATED 3 12 0 4
BTBD11 WILD-TYPE 46 90 4 98
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.037

Table S2716.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BTBD11 MUTATED 1 19 0
BTBD11 WILD-TYPE 25 160 84

Figure S795.  Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.052

Table S2717.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BTBD11 MUTATED 2 7 10 1 0
BTBD11 WILD-TYPE 67 51 102 0 49

Figure S796.  Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S2718.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BTBD11 MUTATED 1 10 3
BTBD11 WILD-TYPE 17 88 92
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.02

Table S2719.  Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BTBD11 MUTATED 0 2 11 0 1
BTBD11 WILD-TYPE 17 32 79 69 0

Figure S797.  Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.18

Table S2720.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FBXO21 MUTATED 0 2 10
FBXO21 WILD-TYPE 80 53 142

Figure S798.  Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.94

Table S2721.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FBXO21 MUTATED 4 0 2
FBXO21 WILD-TYPE 117 37 84
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2722.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FBXO21 MUTATED 8 0 3
FBXO21 WILD-TYPE 156 13 77
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S2723.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FBXO21 MUTATED 0 7 0 4
FBXO21 WILD-TYPE 49 95 4 98
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 0.84

Table S2724.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FBXO21 MUTATED 0 9 3
FBXO21 WILD-TYPE 26 170 81
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.2

Table S2725.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FBXO21 MUTATED 0 6 5 0 1
FBXO21 WILD-TYPE 69 52 107 1 48

Figure S799.  Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S2726.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FBXO21 MUTATED 0 4 2
FBXO21 WILD-TYPE 18 94 93
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2727.  Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FBXO21 MUTATED 0 1 3 2 0
FBXO21 WILD-TYPE 17 33 87 67 1
'C19ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 0.95

Table S2728.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C19ORF26 MUTATED 1 1 5
C19ORF26 WILD-TYPE 79 54 147
'C19ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2729.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C19ORF26 MUTATED 3 0 2
C19ORF26 WILD-TYPE 118 37 84
'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2730.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C19ORF26 MUTATED 5 0 2
C19ORF26 WILD-TYPE 159 13 78
'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 0.97

Table S2731.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C19ORF26 MUTATED 1 4 0 2
C19ORF26 WILD-TYPE 48 98 4 100
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S2732.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C19ORF26 MUTATED 0 6 1
C19ORF26 WILD-TYPE 26 173 83
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0837 (Fisher's exact test), Q value = 0.27

Table S2733.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C19ORF26 MUTATED 0 4 3 0 0
C19ORF26 WILD-TYPE 69 54 109 1 49
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2734.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C19ORF26 MUTATED 0 3 2
C19ORF26 WILD-TYPE 18 95 93
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2735.  Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C19ORF26 MUTATED 0 1 2 2 0
C19ORF26 WILD-TYPE 17 33 88 67 1
'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S2736.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NAA25 MUTATED 2 3 9
NAA25 WILD-TYPE 78 52 143
'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S2737.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NAA25 MUTATED 10 2 2
NAA25 WILD-TYPE 111 35 84
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2738.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NAA25 MUTATED 9 0 4
NAA25 WILD-TYPE 155 13 76
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2739.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NAA25 MUTATED 2 6 0 5
NAA25 WILD-TYPE 47 96 4 97
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.92

Table S2740.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NAA25 MUTATED 1 10 3
NAA25 WILD-TYPE 25 169 81
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.86

Table S2741.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NAA25 MUTATED 2 2 7 0 3
NAA25 WILD-TYPE 67 56 105 1 46
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.91

Table S2742.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NAA25 MUTATED 1 6 4
NAA25 WILD-TYPE 17 92 91
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2743.  Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NAA25 MUTATED 1 2 5 3 0
NAA25 WILD-TYPE 16 32 85 66 1
'MAMSTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S2744.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAMSTR MUTATED 0 0 4
MAMSTR WILD-TYPE 80 55 148
'MAMSTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S2745.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAMSTR MUTATED 2 1 0
MAMSTR WILD-TYPE 119 36 86
'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.74

Table S2746.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAMSTR MUTATED 3 0 0
MAMSTR WILD-TYPE 161 13 80
'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S2747.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAMSTR MUTATED 0 3 0 0
MAMSTR WILD-TYPE 49 99 4 102
'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S2748.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAMSTR MUTATED 0 4 0
MAMSTR WILD-TYPE 26 175 84
'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S2749.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAMSTR MUTATED 0 4 0 0 0
MAMSTR WILD-TYPE 69 54 112 1 49

Figure S800.  Get High-res Image Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S2750.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAMSTR MUTATED 0 3 0
MAMSTR WILD-TYPE 18 95 95
'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.35

Table S2751.  Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAMSTR MUTATED 0 2 1 0 0
MAMSTR WILD-TYPE 17 32 89 69 1
'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S2752.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RING1 MUTATED 1 0 7
RING1 WILD-TYPE 79 55 145
'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.94

Table S2753.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RING1 MUTATED 4 0 2
RING1 WILD-TYPE 117 37 84
'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 0.88

Table S2754.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RING1 MUTATED 4 0 3
RING1 WILD-TYPE 160 13 77
'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S2755.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RING1 MUTATED 0 3 0 4
RING1 WILD-TYPE 49 99 4 98
'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S2756.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RING1 MUTATED 1 7 0
RING1 WILD-TYPE 25 172 84
'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S2757.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RING1 MUTATED 1 3 4 0 0
RING1 WILD-TYPE 68 55 108 1 49
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2758.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RING1 MUTATED 0 3 2
RING1 WILD-TYPE 18 95 93
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S2759.  Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RING1 MUTATED 0 0 5 0 0
RING1 WILD-TYPE 17 34 85 69 1
'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.29

Table S2760.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATM MUTATED 4 5 21
ATM WILD-TYPE 76 50 131
'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.26

Table S2761.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATM MUTATED 18 1 7
ATM WILD-TYPE 103 36 79
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S2762.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATM MUTATED 21 1 5
ATM WILD-TYPE 143 12 75
'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00412 (Fisher's exact test), Q value = 0.062

Table S2763.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATM MUTATED 0 18 0 9
ATM WILD-TYPE 49 84 4 93

Figure S801.  Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.1

Table S2764.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATM MUTATED 0 26 4
ATM WILD-TYPE 26 153 80

Figure S802.  Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S2765.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATM MUTATED 1 9 16 0 4
ATM WILD-TYPE 68 49 96 1 45

Figure S803.  Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S2766.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATM MUTATED 1 14 8
ATM WILD-TYPE 17 84 87
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S2767.  Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATM MUTATED 0 5 13 5 0
ATM WILD-TYPE 17 29 77 64 1
'BRWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00139 (Fisher's exact test), Q value = 0.032

Table S2768.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BRWD1 MUTATED 2 0 18
BRWD1 WILD-TYPE 78 55 134

Figure S804.  Get High-res Image Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S2769.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BRWD1 MUTATED 11 2 5
BRWD1 WILD-TYPE 110 35 81
'BRWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S2770.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BRWD1 MUTATED 16 0 3
BRWD1 WILD-TYPE 148 13 77
'BRWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S2771.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BRWD1 MUTATED 4 11 0 4
BRWD1 WILD-TYPE 45 91 4 98
'BRWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.65

Table S2772.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BRWD1 MUTATED 1 16 4
BRWD1 WILD-TYPE 25 163 80
'BRWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.21

Table S2773.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BRWD1 MUTATED 4 10 5 0 2
BRWD1 WILD-TYPE 65 48 107 1 47

Figure S805.  Get High-res Image Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S2774.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BRWD1 MUTATED 2 11 5
BRWD1 WILD-TYPE 16 87 90
'BRWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 0.29

Table S2775.  Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BRWD1 MUTATED 3 5 8 2 0
BRWD1 WILD-TYPE 14 29 82 67 1
'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.26

Table S2776.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PFKP MUTATED 1 1 11
PFKP WILD-TYPE 79 54 141
'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.23

Table S2777.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PFKP MUTATED 7 1 0
PFKP WILD-TYPE 114 36 86
'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 0.95

Table S2778.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PFKP MUTATED 9 0 3
PFKP WILD-TYPE 155 13 77
'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S2779.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PFKP MUTATED 1 8 0 3
PFKP WILD-TYPE 48 94 4 99
'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S2780.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PFKP MUTATED 1 12 0
PFKP WILD-TYPE 25 167 84

Figure S806.  Get High-res Image Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S2781.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PFKP MUTATED 1 5 7 0 0
PFKP WILD-TYPE 68 53 105 1 49
'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.22

Table S2782.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PFKP MUTATED 1 5 0
PFKP WILD-TYPE 17 93 95
'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S2783.  Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PFKP MUTATED 1 1 4 0 0
PFKP WILD-TYPE 16 33 86 69 1
'SAFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S2784.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SAFB MUTATED 1 1 7
SAFB WILD-TYPE 79 54 145
'SAFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S2785.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SAFB MUTATED 5 1 1
SAFB WILD-TYPE 116 36 85
'SAFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.55

Table S2786.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SAFB MUTATED 3 0 4
SAFB WILD-TYPE 161 13 76
'SAFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2787.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SAFB MUTATED 1 3 0 3
SAFB WILD-TYPE 48 99 4 99
'SAFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S2788.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SAFB MUTATED 0 5 4
SAFB WILD-TYPE 26 174 80
'SAFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0853 (Fisher's exact test), Q value = 0.27

Table S2789.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SAFB MUTATED 1 4 1 0 3
SAFB WILD-TYPE 68 54 111 1 46
'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S2790.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SAFB MUTATED 0 4 2
SAFB WILD-TYPE 18 94 93
'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S2791.  Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SAFB MUTATED 0 2 2 2 0
SAFB WILD-TYPE 17 32 88 67 1
'KCNH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S2792.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KCNH4 MUTATED 1 0 5
KCNH4 WILD-TYPE 79 55 147
'KCNH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S2793.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KCNH4 MUTATED 5 1 0
KCNH4 WILD-TYPE 116 36 86
'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S2794.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KCNH4 MUTATED 5 0 0
KCNH4 WILD-TYPE 159 13 80
'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 0.24

Table S2795.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KCNH4 MUTATED 0 5 0 0
KCNH4 WILD-TYPE 49 97 4 102
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.41

Table S2796.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KCNH4 MUTATED 1 5 0
KCNH4 WILD-TYPE 25 174 84
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.25

Table S2797.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KCNH4 MUTATED 1 4 1 0 0
KCNH4 WILD-TYPE 68 54 111 1 49
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S2798.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KCNH4 MUTATED 0 5 0
KCNH4 WILD-TYPE 18 93 95
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.27

Table S2799.  Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KCNH4 MUTATED 0 3 2 0 0
KCNH4 WILD-TYPE 17 31 88 69 1
'TMEM63A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.077

Table S2800.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TMEM63A MUTATED 0 0 11
TMEM63A WILD-TYPE 80 55 141

Figure S807.  Get High-res Image Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM63A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S2801.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TMEM63A MUTATED 7 0 1
TMEM63A WILD-TYPE 114 37 85
'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S2802.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TMEM63A MUTATED 7 1 1
TMEM63A WILD-TYPE 157 12 79
'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S2803.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TMEM63A MUTATED 0 7 0 2
TMEM63A WILD-TYPE 49 95 4 100
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.4

Table S2804.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TMEM63A MUTATED 0 10 1
TMEM63A WILD-TYPE 26 169 83
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S2805.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TMEM63A MUTATED 0 4 6 0 1
TMEM63A WILD-TYPE 69 54 106 1 48
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S2806.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TMEM63A MUTATED 0 6 2
TMEM63A WILD-TYPE 18 92 93
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.38

Table S2807.  Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TMEM63A MUTATED 0 0 7 1 0
TMEM63A WILD-TYPE 17 34 83 68 1
'SOAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S2808.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SOAT1 MUTATED 0 0 6
SOAT1 WILD-TYPE 80 55 146
'SOAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S2809.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SOAT1 MUTATED 5 0 0
SOAT1 WILD-TYPE 116 37 86
'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S2810.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SOAT1 MUTATED 5 0 0
SOAT1 WILD-TYPE 159 13 80
'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S2811.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SOAT1 MUTATED 0 4 0 1
SOAT1 WILD-TYPE 49 98 4 101
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.51

Table S2812.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SOAT1 MUTATED 0 6 0
SOAT1 WILD-TYPE 26 173 84
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S2813.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SOAT1 MUTATED 0 2 4 0 0
SOAT1 WILD-TYPE 69 56 108 1 49
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S2814.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SOAT1 MUTATED 0 4 0
SOAT1 WILD-TYPE 18 94 95
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S2815.  Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SOAT1 MUTATED 0 1 3 0 0
SOAT1 WILD-TYPE 17 33 87 69 1
'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.26

Table S2816.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CTNNA1 MUTATED 1 1 11
CTNNA1 WILD-TYPE 79 54 141
'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S2817.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CTNNA1 MUTATED 8 0 4
CTNNA1 WILD-TYPE 113 37 82
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S2818.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CTNNA1 MUTATED 7 2 3
CTNNA1 WILD-TYPE 157 11 77
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S2819.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CTNNA1 MUTATED 1 6 1 4
CTNNA1 WILD-TYPE 48 96 3 98
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S2820.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CTNNA1 MUTATED 0 11 2
CTNNA1 WILD-TYPE 26 168 82
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S2821.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CTNNA1 MUTATED 1 4 7 0 1
CTNNA1 WILD-TYPE 68 54 105 1 48
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S2822.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CTNNA1 MUTATED 2 7 2
CTNNA1 WILD-TYPE 16 91 93
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.38

Table S2823.  Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CTNNA1 MUTATED 1 4 5 1 0
CTNNA1 WILD-TYPE 16 30 85 68 1
'FAM55C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S2824.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM55C MUTATED 3 0 10
FAM55C WILD-TYPE 77 55 142
'FAM55C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.55

Table S2825.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM55C MUTATED 8 2 2
FAM55C WILD-TYPE 113 35 84
'FAM55C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S2826.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM55C MUTATED 7 1 2
FAM55C WILD-TYPE 157 12 78
'FAM55C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S2827.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM55C MUTATED 2 6 0 2
FAM55C WILD-TYPE 47 96 4 100
'FAM55C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S2828.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM55C MUTATED 2 10 1
FAM55C WILD-TYPE 24 169 83
'FAM55C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S2829.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM55C MUTATED 2 2 9 0 0
FAM55C WILD-TYPE 67 56 103 1 49
'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S2830.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM55C MUTATED 2 7 2
FAM55C WILD-TYPE 16 91 93
'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S2831.  Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM55C MUTATED 1 1 8 1 0
FAM55C WILD-TYPE 16 33 82 68 1
'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S2832.  Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC25A17 MUTATED 0 0 4
SLC25A17 WILD-TYPE 80 55 148
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S2833.  Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC25A17 MUTATED 4 0 0
SLC25A17 WILD-TYPE 160 13 80
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S2834.  Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC25A17 MUTATED 0 4 0 0
SLC25A17 WILD-TYPE 49 98 4 102
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2835.  Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC25A17 MUTATED 0 4 0
SLC25A17 WILD-TYPE 26 175 84
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S2836.  Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC25A17 MUTATED 1 2 1 0 0
SLC25A17 WILD-TYPE 68 56 111 1 49
'ZNF626 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S2837.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF626 MUTATED 4 0 11
ZNF626 WILD-TYPE 76 55 141
'ZNF626 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S2838.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF626 MUTATED 10 1 2
ZNF626 WILD-TYPE 111 36 84
'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S2839.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF626 MUTATED 9 2 3
ZNF626 WILD-TYPE 155 11 77
'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S2840.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF626 MUTATED 3 4 1 6
ZNF626 WILD-TYPE 46 98 3 96
'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S2841.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF626 MUTATED 2 10 3
ZNF626 WILD-TYPE 24 169 81
'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S2842.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF626 MUTATED 2 4 7 0 2
ZNF626 WILD-TYPE 67 54 105 1 47
'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.68

Table S2843.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF626 MUTATED 1 6 3
ZNF626 WILD-TYPE 17 92 92
'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S2844.  Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF626 MUTATED 1 2 6 1 0
ZNF626 WILD-TYPE 16 32 84 68 1
'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.18

Table S2845.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OPLAH MUTATED 2 0 12
OPLAH WILD-TYPE 78 55 140

Figure S808.  Get High-res Image Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.26

Table S2846.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OPLAH MUTATED 9 1 1
OPLAH WILD-TYPE 112 36 85
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S2847.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OPLAH MUTATED 10 0 2
OPLAH WILD-TYPE 154 13 78
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2848.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OPLAH MUTATED 1 9 0 2
OPLAH WILD-TYPE 48 93 4 100
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S2849.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OPLAH MUTATED 1 11 2
OPLAH WILD-TYPE 25 168 82
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S2850.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OPLAH MUTATED 1 6 5 0 2
OPLAH WILD-TYPE 68 52 107 1 47
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S2851.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OPLAH MUTATED 1 8 2
OPLAH WILD-TYPE 17 90 93
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.73

Table S2852.  Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OPLAH MUTATED 1 3 5 2 0
OPLAH WILD-TYPE 16 31 85 67 1
'MYOCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.033

Table S2853.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MYOCD MUTATED 0 0 13
MYOCD WILD-TYPE 80 55 139

Figure S809.  Get High-res Image Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYOCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S2854.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MYOCD MUTATED 8 1 3
MYOCD WILD-TYPE 113 36 83
'MYOCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S2855.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MYOCD MUTATED 6 1 5
MYOCD WILD-TYPE 158 12 75
'MYOCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S2856.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MYOCD MUTATED 0 5 0 7
MYOCD WILD-TYPE 49 97 4 95
'MYOCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.7

Table S2857.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MYOCD MUTATED 0 10 3
MYOCD WILD-TYPE 26 169 81
'MYOCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S2858.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MYOCD MUTATED 2 5 5 0 1
MYOCD WILD-TYPE 67 53 107 1 48
'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S2859.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MYOCD MUTATED 0 8 2
MYOCD WILD-TYPE 18 90 93
'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S2860.  Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MYOCD MUTATED 0 4 5 1 0
MYOCD WILD-TYPE 17 30 85 68 1
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S2861.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NRAS MUTATED 1 0 3
NRAS WILD-TYPE 79 55 149
'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2862.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NRAS MUTATED 2 0 2
NRAS WILD-TYPE 119 37 84
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S2863.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NRAS MUTATED 1 0 2
NRAS WILD-TYPE 163 13 78
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2864.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NRAS MUTATED 0 1 0 2
NRAS WILD-TYPE 49 101 4 100
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2865.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NRAS MUTATED 0 3 1
NRAS WILD-TYPE 26 176 83
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.86

Table S2866.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NRAS MUTATED 0 1 2 0 1
NRAS WILD-TYPE 69 57 110 1 48
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2867.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NRAS MUTATED 0 2 1
NRAS WILD-TYPE 18 96 94
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2868.  Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NRAS MUTATED 0 0 2 1 0
NRAS WILD-TYPE 17 34 88 68 1
'SEC24C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S2869.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SEC24C MUTATED 0 2 7
SEC24C WILD-TYPE 80 53 145
'SEC24C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.41

Table S2870.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SEC24C MUTATED 7 1 1
SEC24C WILD-TYPE 114 36 85
'SEC24C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2871.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SEC24C MUTATED 8 0 0
SEC24C WILD-TYPE 156 13 80
'SEC24C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00735 (Fisher's exact test), Q value = 0.085

Table S2872.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SEC24C MUTATED 0 8 0 0
SEC24C WILD-TYPE 49 94 4 102

Figure S810.  Get High-res Image Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S2873.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SEC24C MUTATED 0 9 1
SEC24C WILD-TYPE 26 170 83
'SEC24C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S2874.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SEC24C MUTATED 0 6 4 0 0
SEC24C WILD-TYPE 69 52 108 1 49

Figure S811.  Get High-res Image Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S2875.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SEC24C MUTATED 0 5 1
SEC24C WILD-TYPE 18 93 94
'SEC24C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S2876.  Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SEC24C MUTATED 0 3 2 1 0
SEC24C WILD-TYPE 17 31 88 68 1
'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.23

Table S2877.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CEP57 MUTATED 0 0 7
CEP57 WILD-TYPE 80 55 145
'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S2878.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CEP57 MUTATED 4 0 1
CEP57 WILD-TYPE 117 37 85
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.86

Table S2879.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CEP57 MUTATED 5 0 1
CEP57 WILD-TYPE 159 13 79
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S2880.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CEP57 MUTATED 0 5 0 1
CEP57 WILD-TYPE 49 97 4 101
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S2881.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CEP57 MUTATED 0 7 0
CEP57 WILD-TYPE 26 172 84
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S2882.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CEP57 MUTATED 0 3 4 0 0
CEP57 WILD-TYPE 69 55 108 1 49
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S2883.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CEP57 MUTATED 0 3 1
CEP57 WILD-TYPE 18 95 94
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S2884.  Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CEP57 MUTATED 0 1 3 0 0
CEP57 WILD-TYPE 17 33 87 69 1
'TMEM55A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S2885.  Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TMEM55A MUTATED 0 1 2
TMEM55A WILD-TYPE 80 54 150
'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2886.  Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TMEM55A MUTATED 2 0 1
TMEM55A WILD-TYPE 162 13 79
'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2887.  Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TMEM55A MUTATED 0 2 0 1
TMEM55A WILD-TYPE 49 100 4 101
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2888.  Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TMEM55A MUTATED 0 2 1
TMEM55A WILD-TYPE 26 177 83
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0736 (Fisher's exact test), Q value = 0.26

Table S2889.  Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TMEM55A MUTATED 0 2 0 0 1
TMEM55A WILD-TYPE 69 56 112 1 48
'CASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.2

Table S2890.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CASD1 MUTATED 1 0 10
CASD1 WILD-TYPE 79 55 142

Figure S812.  Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.17

Table S2891.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CASD1 MUTATED 7 0 0
CASD1 WILD-TYPE 114 37 86

Figure S813.  Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S2892.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CASD1 MUTATED 8 1 1
CASD1 WILD-TYPE 156 12 79
'CASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.17

Table S2893.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CASD1 MUTATED 1 7 1 1
CASD1 WILD-TYPE 48 95 3 101

Figure S814.  Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.4

Table S2894.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CASD1 MUTATED 0 10 1
CASD1 WILD-TYPE 26 169 83
'CASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S2895.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CASD1 MUTATED 1 7 3 0 0
CASD1 WILD-TYPE 68 51 109 1 49

Figure S815.  Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.2

Table S2896.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CASD1 MUTATED 0 6 0
CASD1 WILD-TYPE 18 92 95

Figure S816.  Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S2897.  Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CASD1 MUTATED 0 3 3 0 0
CASD1 WILD-TYPE 17 31 87 69 1
'CADPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S2898.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CADPS2 MUTATED 1 2 7
CADPS2 WILD-TYPE 79 53 145
'CADPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S2899.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CADPS2 MUTATED 9 1 0
CADPS2 WILD-TYPE 112 36 86

Figure S817.  Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.27

Table S2900.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CADPS2 MUTATED 9 0 0
CADPS2 WILD-TYPE 155 13 80
'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.17

Table S2901.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CADPS2 MUTATED 0 8 0 1
CADPS2 WILD-TYPE 49 94 4 101

Figure S818.  Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.49

Table S2902.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CADPS2 MUTATED 1 9 1
CADPS2 WILD-TYPE 25 170 83
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S2903.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CADPS2 MUTATED 2 7 1 0 1
CADPS2 WILD-TYPE 67 51 111 1 48

Figure S819.  Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S2904.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CADPS2 MUTATED 0 8 2
CADPS2 WILD-TYPE 18 90 93
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.25

Table S2905.  Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CADPS2 MUTATED 0 5 4 1 0
CADPS2 WILD-TYPE 17 29 86 68 1
'MASTL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.23

Table S2906.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MASTL MUTATED 0 3 8
MASTL WILD-TYPE 80 52 144
'MASTL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.66

Table S2907.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MASTL MUTATED 6 0 4
MASTL WILD-TYPE 115 37 82
'MASTL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S2908.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MASTL MUTATED 6 1 3
MASTL WILD-TYPE 158 12 77
'MASTL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S2909.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MASTL MUTATED 1 5 0 4
MASTL WILD-TYPE 48 97 4 98
'MASTL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S2910.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MASTL MUTATED 1 8 2
MASTL WILD-TYPE 25 171 82
'MASTL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.21

Table S2911.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MASTL MUTATED 0 4 7 0 0
MASTL WILD-TYPE 69 54 105 1 49

Figure S820.  Get High-res Image Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.34

Table S2912.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MASTL MUTATED 2 6 2
MASTL WILD-TYPE 16 92 93
'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S2913.  Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MASTL MUTATED 0 0 8 2 0
MASTL WILD-TYPE 17 34 82 67 1
'MRI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S2914.  Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MRI1 MUTATED 0 1 3
MRI1 WILD-TYPE 80 54 149
'MRI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.91

Table S2915.  Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MRI1 MUTATED 3 0 1
MRI1 WILD-TYPE 118 37 85
'MRI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2916.  Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MRI1 MUTATED 3 0 1
MRI1 WILD-TYPE 161 13 79
'MRI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S2917.  Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MRI1 MUTATED 0 3 0 1
MRI1 WILD-TYPE 49 99 4 101
'MRI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S2918.  Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MRI1 MUTATED 0 4 0
MRI1 WILD-TYPE 26 175 84
'MRI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.29

Table S2919.  Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MRI1 MUTATED 0 3 1 0 0
MRI1 WILD-TYPE 69 55 111 1 49
'KBTBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.23

Table S2920.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KBTBD6 MUTATED 2 0 11
KBTBD6 WILD-TYPE 78 55 141
'KBTBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S2921.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KBTBD6 MUTATED 3 0 4
KBTBD6 WILD-TYPE 118 37 82
'KBTBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S2922.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KBTBD6 MUTATED 8 1 2
KBTBD6 WILD-TYPE 156 12 78
'KBTBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.48

Table S2923.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KBTBD6 MUTATED 0 7 0 4
KBTBD6 WILD-TYPE 49 95 4 98
'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S2924.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KBTBD6 MUTATED 0 11 2
KBTBD6 WILD-TYPE 26 168 82
'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.2

Table S2925.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KBTBD6 MUTATED 0 6 6 0 1
KBTBD6 WILD-TYPE 69 52 106 1 48

Figure S821.  Get High-res Image Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.48

Table S2926.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KBTBD6 MUTATED 1 4 1
KBTBD6 WILD-TYPE 17 94 94
'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S2927.  Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KBTBD6 MUTATED 0 0 5 1 0
KBTBD6 WILD-TYPE 17 34 85 68 1
'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.3

Table S2928.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLA2G15 MUTATED 1 0 8
PLA2G15 WILD-TYPE 79 55 144
'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.67

Table S2929.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLA2G15 MUTATED 5 1 1
PLA2G15 WILD-TYPE 116 36 85
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S2930.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLA2G15 MUTATED 7 0 0
PLA2G15 WILD-TYPE 157 13 80
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S2931.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLA2G15 MUTATED 0 7 0 0
PLA2G15 WILD-TYPE 49 95 4 102

Figure S822.  Get High-res Image Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S2932.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLA2G15 MUTATED 1 7 1
PLA2G15 WILD-TYPE 25 172 83
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S2933.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLA2G15 MUTATED 1 4 3 0 1
PLA2G15 WILD-TYPE 68 54 109 1 48
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S2934.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLA2G15 MUTATED 0 5 1
PLA2G15 WILD-TYPE 18 93 94
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S2935.  Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLA2G15 MUTATED 0 2 3 1 0
PLA2G15 WILD-TYPE 17 32 87 68 1
'JHDM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.27

Table S2936.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
JHDM1D MUTATED 1 0 9
JHDM1D WILD-TYPE 79 55 143
'JHDM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.12

Table S2937.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
JHDM1D MUTATED 8 0 0
JHDM1D WILD-TYPE 113 37 86

Figure S823.  Get High-res Image Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S2938.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
JHDM1D MUTATED 8 1 1
JHDM1D WILD-TYPE 156 12 79
'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.25

Table S2939.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
JHDM1D MUTATED 1 8 0 1
JHDM1D WILD-TYPE 48 94 4 101
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.28

Table S2940.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
JHDM1D MUTATED 1 9 0
JHDM1D WILD-TYPE 25 170 84
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00347 (Fisher's exact test), Q value = 0.056

Table S2941.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
JHDM1D MUTATED 2 7 1 0 0
JHDM1D WILD-TYPE 67 51 111 1 49

Figure S824.  Get High-res Image Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S2942.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
JHDM1D MUTATED 1 6 1
JHDM1D WILD-TYPE 17 92 94
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S2943.  Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
JHDM1D MUTATED 1 2 5 0 0
JHDM1D WILD-TYPE 16 32 85 69 1
'NUFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S2944.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NUFIP2 MUTATED 1 0 6
NUFIP2 WILD-TYPE 79 55 146
'NUFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S2945.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NUFIP2 MUTATED 5 0 1
NUFIP2 WILD-TYPE 116 37 85
'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2946.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NUFIP2 MUTATED 4 0 2
NUFIP2 WILD-TYPE 160 13 78
'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S2947.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NUFIP2 MUTATED 0 4 0 2
NUFIP2 WILD-TYPE 49 98 4 100
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S2948.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NUFIP2 MUTATED 0 6 1
NUFIP2 WILD-TYPE 26 173 83
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 0.98

Table S2949.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NUFIP2 MUTATED 1 1 4 0 1
NUFIP2 WILD-TYPE 68 57 108 1 48
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S2950.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NUFIP2 MUTATED 0 5 1
NUFIP2 WILD-TYPE 18 93 94
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S2951.  Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NUFIP2 MUTATED 0 0 5 1 0
NUFIP2 WILD-TYPE 17 34 85 68 1
'KCNJ10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00571 (Fisher's exact test), Q value = 0.074

Table S2952.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KCNJ10 MUTATED 0 0 11
KCNJ10 WILD-TYPE 80 55 141

Figure S825.  Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.12

Table S2953.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KCNJ10 MUTATED 8 0 0
KCNJ10 WILD-TYPE 113 37 86

Figure S826.  Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.27

Table S2954.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KCNJ10 MUTATED 9 0 0
KCNJ10 WILD-TYPE 155 13 80
'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.17

Table S2955.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KCNJ10 MUTATED 0 8 0 1
KCNJ10 WILD-TYPE 49 94 4 101

Figure S827.  Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.16

Table S2956.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KCNJ10 MUTATED 0 11 0
KCNJ10 WILD-TYPE 26 168 84

Figure S828.  Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S2957.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KCNJ10 MUTATED 0 10 1 0 0
KCNJ10 WILD-TYPE 69 48 111 1 49

Figure S829.  Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.27

Table S2958.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KCNJ10 MUTATED 0 7 1
KCNJ10 WILD-TYPE 18 91 94
'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.22

Table S2959.  Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KCNJ10 MUTATED 0 4 4 0 0
KCNJ10 WILD-TYPE 17 30 86 69 1
'TRUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.3

Table S2960.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TRUB1 MUTATED 1 0 8
TRUB1 WILD-TYPE 79 55 144
'TRUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S2961.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TRUB1 MUTATED 6 0 2
TRUB1 WILD-TYPE 115 37 84
'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.56

Table S2962.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TRUB1 MUTATED 8 0 1
TRUB1 WILD-TYPE 156 13 79
'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S2963.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TRUB1 MUTATED 1 7 0 1
TRUB1 WILD-TYPE 48 95 4 101
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S2964.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TRUB1 MUTATED 1 8 0
TRUB1 WILD-TYPE 25 171 84
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S2965.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TRUB1 MUTATED 1 3 5 0 0
TRUB1 WILD-TYPE 68 55 107 1 49
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S2966.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TRUB1 MUTATED 1 7 0
TRUB1 WILD-TYPE 17 91 95

Figure S830.  Get High-res Image Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S2967.  Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TRUB1 MUTATED 0 2 6 0 0
TRUB1 WILD-TYPE 17 32 84 69 1
'AGBL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S2968.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AGBL5 MUTATED 1 2 8
AGBL5 WILD-TYPE 79 53 144
'AGBL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S2969.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AGBL5 MUTATED 7 0 4
AGBL5 WILD-TYPE 114 37 82
'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S2970.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AGBL5 MUTATED 6 1 1
AGBL5 WILD-TYPE 158 12 79
'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S2971.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AGBL5 MUTATED 0 6 0 2
AGBL5 WILD-TYPE 49 96 4 100
'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.84

Table S2972.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AGBL5 MUTATED 0 9 3
AGBL5 WILD-TYPE 26 170 81
'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.37

Table S2973.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AGBL5 MUTATED 0 4 6 0 2
AGBL5 WILD-TYPE 69 54 106 1 47
'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.73

Table S2974.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AGBL5 MUTATED 1 3 5
AGBL5 WILD-TYPE 17 95 90
'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.99

Table S2975.  Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AGBL5 MUTATED 0 2 4 3 0
AGBL5 WILD-TYPE 17 32 86 66 1
'PLAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00591 (Fisher's exact test), Q value = 0.075

Table S2976.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLAG1 MUTATED 0 0 11
PLAG1 WILD-TYPE 80 55 141

Figure S831.  Get High-res Image Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S2977.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLAG1 MUTATED 5 0 2
PLAG1 WILD-TYPE 116 37 84
'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2978.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLAG1 MUTATED 7 0 3
PLAG1 WILD-TYPE 157 13 77
'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S2979.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLAG1 MUTATED 0 7 0 3
PLAG1 WILD-TYPE 49 95 4 99
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.4

Table S2980.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLAG1 MUTATED 0 10 1
PLAG1 WILD-TYPE 26 169 83
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 0.28

Table S2981.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLAG1 MUTATED 0 5 5 0 1
PLAG1 WILD-TYPE 69 53 107 1 48
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S2982.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLAG1 MUTATED 0 6 1
PLAG1 WILD-TYPE 18 92 94
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S2983.  Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLAG1 MUTATED 0 3 3 1 0
PLAG1 WILD-TYPE 17 31 87 68 1
'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S2984.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HEPACAM2 MUTATED 1 0 7
HEPACAM2 WILD-TYPE 79 55 145
'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S2985.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HEPACAM2 MUTATED 4 0 1
HEPACAM2 WILD-TYPE 117 37 85
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2986.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HEPACAM2 MUTATED 5 0 2
HEPACAM2 WILD-TYPE 159 13 78
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S2987.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HEPACAM2 MUTATED 0 5 0 2
HEPACAM2 WILD-TYPE 49 97 4 100
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S2988.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HEPACAM2 MUTATED 0 7 1
HEPACAM2 WILD-TYPE 26 172 83
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.23

Table S2989.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HEPACAM2 MUTATED 0 5 2 0 1
HEPACAM2 WILD-TYPE 69 53 110 1 48
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S2990.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HEPACAM2 MUTATED 0 4 1
HEPACAM2 WILD-TYPE 18 94 94
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S2991.  Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HEPACAM2 MUTATED 0 1 3 1 0
HEPACAM2 WILD-TYPE 17 33 87 68 1
'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2992.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CSF3R MUTATED 1 1 10
CSF3R WILD-TYPE 79 54 142
'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00707 (Fisher's exact test), Q value = 0.084

Table S2993.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CSF3R MUTATED 9 0 0
CSF3R WILD-TYPE 112 37 86

Figure S832.  Get High-res Image Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S2994.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CSF3R MUTATED 10 0 2
CSF3R WILD-TYPE 154 13 78
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.15

Table S2995.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CSF3R MUTATED 0 10 0 2
CSF3R WILD-TYPE 49 92 4 100

Figure S833.  Get High-res Image Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S2996.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CSF3R MUTATED 0 11 1
CSF3R WILD-TYPE 26 168 83
'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.19

Table S2997.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CSF3R MUTATED 1 7 3 0 1
CSF3R WILD-TYPE 68 51 109 1 48

Figure S834.  Get High-res Image Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.21

Table S2998.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CSF3R MUTATED 0 8 1
CSF3R WILD-TYPE 18 90 94

Figure S835.  Get High-res Image Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S2999.  Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CSF3R MUTATED 0 2 6 1 0
CSF3R WILD-TYPE 17 32 84 68 1
'RPGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S3000.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RPGR MUTATED 0 1 7
RPGR WILD-TYPE 80 54 145
'RPGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S3001.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RPGR MUTATED 7 0 0
RPGR WILD-TYPE 114 37 86

Figure S836.  Get High-res Image Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RPGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S3002.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RPGR MUTATED 7 0 0
RPGR WILD-TYPE 157 13 80
'RPGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S3003.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RPGR MUTATED 0 6 0 1
RPGR WILD-TYPE 49 96 4 101
'RPGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3004.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RPGR MUTATED 0 7 1
RPGR WILD-TYPE 26 172 83
'RPGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S3005.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RPGR MUTATED 0 2 6 0 0
RPGR WILD-TYPE 69 56 106 1 49
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S3006.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RPGR MUTATED 1 2 1
RPGR WILD-TYPE 17 96 94
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3007.  Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RPGR MUTATED 0 1 2 1 0
RPGR WILD-TYPE 17 33 88 68 1
'EPB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S3008.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EPB49 MUTATED 0 1 7
EPB49 WILD-TYPE 80 54 145
'EPB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S3009.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EPB49 MUTATED 4 0 1
EPB49 WILD-TYPE 117 37 85
'EPB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S3010.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EPB49 MUTATED 5 1 2
EPB49 WILD-TYPE 159 12 78
'EPB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S3011.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EPB49 MUTATED 0 5 0 3
EPB49 WILD-TYPE 49 97 4 99
'EPB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3012.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EPB49 MUTATED 0 7 1
EPB49 WILD-TYPE 26 172 83
'EPB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.22

Table S3013.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EPB49 MUTATED 0 5 2 0 1
EPB49 WILD-TYPE 69 53 110 1 48
'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S3014.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EPB49 MUTATED 0 4 0
EPB49 WILD-TYPE 18 94 95
'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S3015.  Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EPB49 MUTATED 0 2 2 0 0
EPB49 WILD-TYPE 17 32 88 69 1
'LRFN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.18

Table S3016.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LRFN3 MUTATED 2 1 15
LRFN3 WILD-TYPE 78 54 137

Figure S837.  Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRFN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S3017.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LRFN3 MUTATED 13 0 2
LRFN3 WILD-TYPE 108 37 84

Figure S838.  Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.6

Table S3018.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LRFN3 MUTATED 13 1 3
LRFN3 WILD-TYPE 151 12 77
'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0847 (Fisher's exact test), Q value = 0.27

Table S3019.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LRFN3 MUTATED 1 12 0 4
LRFN3 WILD-TYPE 48 90 4 98
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S3020.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LRFN3 MUTATED 2 14 2
LRFN3 WILD-TYPE 24 165 82
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S3021.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LRFN3 MUTATED 3 8 6 0 1
LRFN3 WILD-TYPE 66 50 106 1 48
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.29

Table S3022.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LRFN3 MUTATED 1 9 2
LRFN3 WILD-TYPE 17 89 93
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.36

Table S3023.  Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LRFN3 MUTATED 1 5 4 2 0
LRFN3 WILD-TYPE 16 29 86 67 1
'GRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S3024.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GRK4 MUTATED 0 1 2
GRK4 WILD-TYPE 80 54 150
'GRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S3025.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GRK4 MUTATED 4 0 0
GRK4 WILD-TYPE 117 37 86
'GRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.74

Table S3026.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GRK4 MUTATED 3 0 0
GRK4 WILD-TYPE 161 13 80
'GRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S3027.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GRK4 MUTATED 0 3 0 0
GRK4 WILD-TYPE 49 99 4 102
'GRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.68

Table S3028.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GRK4 MUTATED 0 4 0
GRK4 WILD-TYPE 26 175 84
'GRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S3029.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GRK4 MUTATED 0 4 0 0 0
GRK4 WILD-TYPE 69 54 112 1 49

Figure S839.  Get High-res Image Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S3030.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GRK4 MUTATED 0 4 0
GRK4 WILD-TYPE 18 94 95
'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00273 (Fisher's exact test), Q value = 0.05

Table S3031.  Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GRK4 MUTATED 0 4 0 0 0
GRK4 WILD-TYPE 17 30 90 69 1

Figure S840.  Get High-res Image Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3032.  Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF23 MUTATED 2 0 1
ZNF23 WILD-TYPE 162 13 79
'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3033.  Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF23 MUTATED 0 2 0 1
ZNF23 WILD-TYPE 49 100 4 101
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3034.  Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF23 MUTATED 0 2 1
ZNF23 WILD-TYPE 26 177 83
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S3035.  Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF23 MUTATED 0 1 2 0 0
ZNF23 WILD-TYPE 69 57 110 1 49
'SERPINB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.41

Table S3036.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SERPINB8 MUTATED 1 0 7
SERPINB8 WILD-TYPE 79 55 145
'SERPINB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S3037.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SERPINB8 MUTATED 5 0 2
SERPINB8 WILD-TYPE 116 37 84
'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.28

Table S3038.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SERPINB8 MUTATED 6 1 0
SERPINB8 WILD-TYPE 158 12 80
'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S3039.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SERPINB8 MUTATED 0 6 0 1
SERPINB8 WILD-TYPE 49 96 4 101
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3040.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SERPINB8 MUTATED 0 7 1
SERPINB8 WILD-TYPE 26 172 83
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S3041.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SERPINB8 MUTATED 1 2 5 0 0
SERPINB8 WILD-TYPE 68 56 107 1 49
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S3042.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SERPINB8 MUTATED 0 4 2
SERPINB8 WILD-TYPE 18 94 93
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 0.9

Table S3043.  Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SERPINB8 MUTATED 0 1 4 1 0
SERPINB8 WILD-TYPE 17 33 86 68 1
'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.81

Table S3044.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ERBB4 MUTATED 9 6 23
ERBB4 WILD-TYPE 71 49 129
'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.27

Table S3045.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ERBB4 MUTATED 21 5 6
ERBB4 WILD-TYPE 100 32 80
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S3046.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ERBB4 MUTATED 24 1 11
ERBB4 WILD-TYPE 140 12 69
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3047.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ERBB4 MUTATED 3 19 1 13
ERBB4 WILD-TYPE 46 83 3 89
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.3

Table S3048.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ERBB4 MUTATED 1 30 8
ERBB4 WILD-TYPE 25 149 76
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.25

Table S3049.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ERBB4 MUTATED 10 13 14 0 2
ERBB4 WILD-TYPE 59 45 98 1 47
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S3050.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ERBB4 MUTATED 2 19 10
ERBB4 WILD-TYPE 16 79 85
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S3051.  Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ERBB4 MUTATED 3 6 16 6 0
ERBB4 WILD-TYPE 14 28 74 63 1
'WDR59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 0.86

Table S3052.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WDR59 MUTATED 2 1 7
WDR59 WILD-TYPE 78 54 145
'WDR59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.24

Table S3053.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WDR59 MUTATED 5 2 0
WDR59 WILD-TYPE 116 35 86
'WDR59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S3054.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WDR59 MUTATED 10 0 1
WDR59 WILD-TYPE 154 13 79
'WDR59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0844 (Fisher's exact test), Q value = 0.27

Table S3055.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WDR59 MUTATED 2 8 0 1
WDR59 WILD-TYPE 47 94 4 101
'WDR59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S3056.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WDR59 MUTATED 0 9 2
WDR59 WILD-TYPE 26 170 82
'WDR59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0888 (Fisher's exact test), Q value = 0.27

Table S3057.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WDR59 MUTATED 2 6 2 0 1
WDR59 WILD-TYPE 67 52 110 1 48
'WDR59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S3058.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WDR59 MUTATED 0 5 2
WDR59 WILD-TYPE 18 93 93
'WDR59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.27

Table S3059.  Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WDR59 MUTATED 0 4 1 2 0
WDR59 WILD-TYPE 17 30 89 67 1
'SPHK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S3060.  Gene #386: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SPHK2 MUTATED 0 0 3
SPHK2 WILD-TYPE 80 55 149
'SPHK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S3061.  Gene #386: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SPHK2 MUTATED 0 3 0
SPHK2 WILD-TYPE 26 176 84
'SPHK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S3062.  Gene #386: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SPHK2 MUTATED 0 2 1 0 0
SPHK2 WILD-TYPE 69 56 111 1 49
'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S3063.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RUSC2 MUTATED 1 2 16
RUSC2 WILD-TYPE 79 53 136

Figure S841.  Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.17

Table S3064.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RUSC2 MUTATED 13 0 3
RUSC2 WILD-TYPE 108 37 83

Figure S842.  Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.66

Table S3065.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RUSC2 MUTATED 12 0 3
RUSC2 WILD-TYPE 152 13 77
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.19

Table S3066.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RUSC2 MUTATED 0 11 0 4
RUSC2 WILD-TYPE 49 91 4 98

Figure S843.  Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S3067.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RUSC2 MUTATED 0 15 4
RUSC2 WILD-TYPE 26 164 80
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.35

Table S3068.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RUSC2 MUTATED 1 7 8 0 3
RUSC2 WILD-TYPE 68 51 104 1 46
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S3069.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RUSC2 MUTATED 0 10 5
RUSC2 WILD-TYPE 18 88 90
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S3070.  Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RUSC2 MUTATED 0 4 7 4 0
RUSC2 WILD-TYPE 17 30 83 65 1
'CHST15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S3071.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CHST15 MUTATED 1 0 12
CHST15 WILD-TYPE 79 55 140

Figure S844.  Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHST15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 0.085

Table S3072.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CHST15 MUTATED 9 0 0
CHST15 WILD-TYPE 112 37 86

Figure S845.  Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHST15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S3073.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CHST15 MUTATED 9 0 1
CHST15 WILD-TYPE 155 13 79
'CHST15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.26

Table S3074.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CHST15 MUTATED 0 8 0 2
CHST15 WILD-TYPE 49 94 4 100
'CHST15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.27

Table S3075.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CHST15 MUTATED 0 12 1
CHST15 WILD-TYPE 26 167 83
'CHST15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.23

Table S3076.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CHST15 MUTATED 1 7 4 0 1
CHST15 WILD-TYPE 68 51 108 1 48
'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 0.95

Table S3077.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CHST15 MUTATED 0 5 3
CHST15 WILD-TYPE 18 93 92
'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S3078.  Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CHST15 MUTATED 0 2 5 1 0
CHST15 WILD-TYPE 17 32 85 68 1
'TAF1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.23

Table S3079.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TAF1L MUTATED 2 4 17
TAF1L WILD-TYPE 78 51 135
'TAF1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3080.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TAF1L MUTATED 12 2 3
TAF1L WILD-TYPE 109 35 83
'TAF1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.89

Table S3081.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TAF1L MUTATED 15 1 5
TAF1L WILD-TYPE 149 12 75
'TAF1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S3082.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TAF1L MUTATED 2 12 1 6
TAF1L WILD-TYPE 47 90 3 96
'TAF1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S3083.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TAF1L MUTATED 1 17 5
TAF1L WILD-TYPE 25 162 79
'TAF1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S3084.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TAF1L MUTATED 4 9 8 0 2
TAF1L WILD-TYPE 65 49 104 1 47
'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S3085.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TAF1L MUTATED 1 10 5
TAF1L WILD-TYPE 17 88 90
'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S3086.  Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TAF1L MUTATED 1 4 8 3 0
TAF1L WILD-TYPE 16 30 82 66 1
'USP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S3087.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
USP8 MUTATED 1 0 6
USP8 WILD-TYPE 79 55 146
'USP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S3088.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
USP8 MUTATED 4 0 0
USP8 WILD-TYPE 117 37 86
'USP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S3089.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
USP8 MUTATED 7 0 0
USP8 WILD-TYPE 157 13 80
'USP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S3090.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
USP8 MUTATED 0 7 0 0
USP8 WILD-TYPE 49 95 4 102

Figure S846.  Get High-res Image Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'USP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S3091.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
USP8 MUTATED 0 7 0
USP8 WILD-TYPE 26 172 84
'USP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.27

Table S3092.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
USP8 MUTATED 0 4 3 0 0
USP8 WILD-TYPE 69 54 109 1 49
'USP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S3093.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
USP8 MUTATED 0 3 1
USP8 WILD-TYPE 18 95 94
'USP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S3094.  Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
USP8 MUTATED 0 2 2 0 0
USP8 WILD-TYPE 17 32 88 69 1
'MYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S3095.  Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MYB MUTATED 0 1 5
MYB WILD-TYPE 80 54 147
'MYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S3096.  Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MYB MUTATED 4 0 0
MYB WILD-TYPE 117 37 86
'MYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.86

Table S3097.  Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MYB MUTATED 5 0 1
MYB WILD-TYPE 159 13 79
'MYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S3098.  Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MYB MUTATED 0 5 0 1
MYB WILD-TYPE 49 97 4 101
'MYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S3099.  Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MYB MUTATED 0 6 0
MYB WILD-TYPE 26 173 84
'MYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S3100.  Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MYB MUTATED 0 5 1 0 0
MYB WILD-TYPE 69 53 111 1 49

Figure S847.  Get High-res Image Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CREM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S3101.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CREM MUTATED 0 1 3
CREM WILD-TYPE 80 54 149
'CREM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S3102.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CREM MUTATED 4 0 0
CREM WILD-TYPE 117 37 86
'CREM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S3103.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CREM MUTATED 4 0 0
CREM WILD-TYPE 160 13 80
'CREM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S3104.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CREM MUTATED 0 3 0 1
CREM WILD-TYPE 49 99 4 101
'CREM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.68

Table S3105.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CREM MUTATED 0 4 0
CREM WILD-TYPE 26 175 84
'CREM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S3106.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CREM MUTATED 0 2 2 0 0
CREM WILD-TYPE 69 56 110 1 49
'CREM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S3107.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CREM MUTATED 1 2 1
CREM WILD-TYPE 17 96 94
'CREM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S3108.  Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CREM MUTATED 0 1 3 0 0
CREM WILD-TYPE 17 33 87 69 1
'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S3109.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CD93 MUTATED 1 1 9
CD93 WILD-TYPE 79 54 143
'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.17

Table S3110.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CD93 MUTATED 8 1 0
CD93 WILD-TYPE 113 36 86

Figure S848.  Get High-res Image Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S3111.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CD93 MUTATED 7 1 1
CD93 WILD-TYPE 157 12 79
'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S3112.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CD93 MUTATED 1 7 0 1
CD93 WILD-TYPE 48 95 4 101
'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.21

Table S3113.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CD93 MUTATED 1 10 0
CD93 WILD-TYPE 25 169 84

Figure S849.  Get High-res Image Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.25

Table S3114.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CD93 MUTATED 2 6 3 0 0
CD93 WILD-TYPE 67 52 109 1 49
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.46

Table S3115.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CD93 MUTATED 1 5 1
CD93 WILD-TYPE 17 93 94
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S3116.  Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CD93 MUTATED 1 2 4 0 0
CD93 WILD-TYPE 16 32 86 69 1
'B3GNT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.17

Table S3117.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
B3GNT5 MUTATED 0 1 9
B3GNT5 WILD-TYPE 80 54 143

Figure S850.  Get High-res Image Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B3GNT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.84

Table S3118.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
B3GNT5 MUTATED 6 1 2
B3GNT5 WILD-TYPE 115 36 84
'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S3119.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
B3GNT5 MUTATED 7 1 2
B3GNT5 WILD-TYPE 157 12 78
'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S3120.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
B3GNT5 MUTATED 0 7 0 3
B3GNT5 WILD-TYPE 49 95 4 99
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.18

Table S3121.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
B3GNT5 MUTATED 0 10 0
B3GNT5 WILD-TYPE 26 169 84

Figure S851.  Get High-res Image Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0662 (Fisher's exact test), Q value = 0.25

Table S3122.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
B3GNT5 MUTATED 0 4 6 0 0
B3GNT5 WILD-TYPE 69 54 106 1 49
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S3123.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
B3GNT5 MUTATED 1 6 1
B3GNT5 WILD-TYPE 17 92 94
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S3124.  Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
B3GNT5 MUTATED 0 3 5 0 0
B3GNT5 WILD-TYPE 17 31 85 69 1
'ART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S3125.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ART1 MUTATED 1 0 6
ART1 WILD-TYPE 79 55 146
'ART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S3126.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ART1 MUTATED 4 1 0
ART1 WILD-TYPE 117 36 86
'ART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S3127.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ART1 MUTATED 7 0 0
ART1 WILD-TYPE 157 13 80
'ART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.2

Table S3128.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ART1 MUTATED 1 6 0 0
ART1 WILD-TYPE 48 96 4 102

Figure S852.  Get High-res Image Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S3129.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ART1 MUTATED 0 7 0
ART1 WILD-TYPE 26 172 84
'ART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S3130.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ART1 MUTATED 1 4 2 0 0
ART1 WILD-TYPE 68 54 110 1 49
'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S3131.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ART1 MUTATED 0 5 0
ART1 WILD-TYPE 18 93 95
'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S3132.  Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ART1 MUTATED 0 2 3 0 0
ART1 WILD-TYPE 17 32 87 69 1
'IKBKE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S3133.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IKBKE MUTATED 0 1 11
IKBKE WILD-TYPE 80 54 141

Figure S853.  Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IKBKE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S3134.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IKBKE MUTATED 8 1 1
IKBKE WILD-TYPE 113 36 85
'IKBKE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.18

Table S3135.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IKBKE MUTATED 10 1 0
IKBKE WILD-TYPE 154 12 80

Figure S854.  Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'IKBKE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.003

Table S3136.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IKBKE MUTATED 0 9 2 0
IKBKE WILD-TYPE 49 93 2 102

Figure S855.  Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S3137.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IKBKE MUTATED 0 10 2
IKBKE WILD-TYPE 26 169 82
'IKBKE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.12

Table S3138.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IKBKE MUTATED 0 6 6 0 0
IKBKE WILD-TYPE 69 52 106 1 49

Figure S856.  Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S3139.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IKBKE MUTATED 1 7 2
IKBKE WILD-TYPE 17 91 93
'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.23

Table S3140.  Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IKBKE MUTATED 0 3 7 0 0
IKBKE WILD-TYPE 17 31 83 69 1
'TIMM44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3141.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TIMM44 MUTATED 0 0 5
TIMM44 WILD-TYPE 80 55 147
'TIMM44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.31

Table S3142.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TIMM44 MUTATED 5 0 0
TIMM44 WILD-TYPE 116 37 86
'TIMM44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S3143.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TIMM44 MUTATED 5 0 0
TIMM44 WILD-TYPE 159 13 80
'TIMM44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.24

Table S3144.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TIMM44 MUTATED 0 5 0 0
TIMM44 WILD-TYPE 49 97 4 102
'TIMM44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S3145.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TIMM44 MUTATED 0 5 0
TIMM44 WILD-TYPE 26 174 84
'TIMM44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S3146.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TIMM44 MUTATED 0 3 2 0 0
TIMM44 WILD-TYPE 69 55 110 1 49
'TIMM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S3147.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TIMM44 MUTATED 1 3 0
TIMM44 WILD-TYPE 17 95 95
'TIMM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.21

Table S3148.  Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TIMM44 MUTATED 0 3 1 0 0
TIMM44 WILD-TYPE 17 31 89 69 1

Figure S857.  Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ELOVL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S3149.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ELOVL2 MUTATED 2 0 5
ELOVL2 WILD-TYPE 78 55 147
'ELOVL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S3150.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ELOVL2 MUTATED 4 1 1
ELOVL2 WILD-TYPE 117 36 85
'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S3151.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ELOVL2 MUTATED 4 1 1
ELOVL2 WILD-TYPE 160 12 79
'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.87

Table S3152.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ELOVL2 MUTATED 2 2 0 2
ELOVL2 WILD-TYPE 47 100 4 100
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S3153.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ELOVL2 MUTATED 1 6 0
ELOVL2 WILD-TYPE 25 173 84
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.56

Table S3154.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ELOVL2 MUTATED 2 3 2 0 0
ELOVL2 WILD-TYPE 67 55 110 1 49
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S3155.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ELOVL2 MUTATED 2 3 0
ELOVL2 WILD-TYPE 16 95 95

Figure S858.  Get High-res Image Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.23

Table S3156.  Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ELOVL2 MUTATED 2 0 3 0 0
ELOVL2 WILD-TYPE 15 34 87 69 1
'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.24

Table S3157.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ALDH2 MUTATED 0 1 8
ALDH2 WILD-TYPE 80 54 144
'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S3158.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ALDH2 MUTATED 7 0 1
ALDH2 WILD-TYPE 114 37 85
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S3159.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ALDH2 MUTATED 6 0 1
ALDH2 WILD-TYPE 158 13 79
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S3160.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ALDH2 MUTATED 0 6 0 1
ALDH2 WILD-TYPE 49 96 4 101
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S3161.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ALDH2 MUTATED 0 8 1
ALDH2 WILD-TYPE 26 171 83
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S3162.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ALDH2 MUTATED 0 2 6 0 1
ALDH2 WILD-TYPE 69 56 106 1 48
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S3163.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ALDH2 MUTATED 0 6 1
ALDH2 WILD-TYPE 18 92 94
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.73

Table S3164.  Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ALDH2 MUTATED 0 1 5 1 0
ALDH2 WILD-TYPE 17 33 85 68 1
'H2AFY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S3165.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
H2AFY2 MUTATED 1 0 6
H2AFY2 WILD-TYPE 79 55 146
'H2AFY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S3166.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
H2AFY2 MUTATED 4 1 0
H2AFY2 WILD-TYPE 117 36 86
'H2AFY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3167.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
H2AFY2 MUTATED 4 0 2
H2AFY2 WILD-TYPE 160 13 78
'H2AFY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3168.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
H2AFY2 MUTATED 1 3 0 2
H2AFY2 WILD-TYPE 48 99 4 100
'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S3169.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
H2AFY2 MUTATED 1 6 0
H2AFY2 WILD-TYPE 25 173 84
'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3170.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
H2AFY2 MUTATED 3 2 2 0 0
H2AFY2 WILD-TYPE 66 56 110 1 49
'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S3171.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
H2AFY2 MUTATED 0 5 0
H2AFY2 WILD-TYPE 18 93 95
'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S3172.  Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
H2AFY2 MUTATED 1 2 2 0 0
H2AFY2 WILD-TYPE 16 32 88 69 1
'SOHLH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S3173.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SOHLH2 MUTATED 3 4 7
SOHLH2 WILD-TYPE 77 51 145
'SOHLH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S3174.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SOHLH2 MUTATED 10 1 2
SOHLH2 WILD-TYPE 111 36 84
'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.95

Table S3175.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SOHLH2 MUTATED 9 0 3
SOHLH2 WILD-TYPE 155 13 77
'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S3176.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SOHLH2 MUTATED 2 6 0 4
SOHLH2 WILD-TYPE 47 96 4 98
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.72

Table S3177.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SOHLH2 MUTATED 0 9 5
SOHLH2 WILD-TYPE 26 170 79
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.06 (Fisher's exact test), Q value = 0.23

Table S3178.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SOHLH2 MUTATED 5 5 1 0 3
SOHLH2 WILD-TYPE 64 53 111 1 46
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.98

Table S3179.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SOHLH2 MUTATED 0 6 5
SOHLH2 WILD-TYPE 18 92 90
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 0.98

Table S3180.  Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SOHLH2 MUTATED 1 2 4 4 0
SOHLH2 WILD-TYPE 16 32 86 65 1
'CROT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.16

Table S3181.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CROT MUTATED 0 1 10
CROT WILD-TYPE 80 54 142

Figure S859.  Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CROT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.5

Table S3182.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CROT MUTATED 7 0 2
CROT WILD-TYPE 114 37 84
'CROT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S3183.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CROT MUTATED 9 0 1
CROT WILD-TYPE 155 13 79
'CROT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.26

Table S3184.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CROT MUTATED 0 8 0 2
CROT WILD-TYPE 49 94 4 100
'CROT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S3185.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CROT MUTATED 0 10 1
CROT WILD-TYPE 26 169 83
'CROT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3186.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CROT MUTATED 1 5 5 0 0
CROT WILD-TYPE 68 53 107 1 49
'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S3187.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CROT MUTATED 1 4 1
CROT WILD-TYPE 17 94 94
'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S3188.  Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CROT MUTATED 0 3 2 1 0
CROT WILD-TYPE 17 31 88 68 1
'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.18

Table S3189.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GON4L MUTATED 0 1 9
GON4L WILD-TYPE 80 54 143

Figure S860.  Get High-res Image Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00679 (Fisher's exact test), Q value = 0.082

Table S3190.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GON4L MUTATED 9 0 0
GON4L WILD-TYPE 112 37 86

Figure S861.  Get High-res Image Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S3191.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GON4L MUTATED 8 0 1
GON4L WILD-TYPE 156 13 79
'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S3192.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GON4L MUTATED 1 6 0 2
GON4L WILD-TYPE 48 96 4 100
'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S3193.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GON4L MUTATED 0 9 1
GON4L WILD-TYPE 26 170 83
'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S3194.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GON4L MUTATED 1 5 3 0 1
GON4L WILD-TYPE 68 53 109 1 48
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S3195.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GON4L MUTATED 0 5 2
GON4L WILD-TYPE 18 93 93
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.73

Table S3196.  Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GON4L MUTATED 0 1 5 1 0
GON4L WILD-TYPE 17 33 85 68 1
'CNKSR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.89

Table S3197.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CNKSR2 MUTATED 4 1 7
CNKSR2 WILD-TYPE 76 54 145
'CNKSR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.96

Table S3198.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CNKSR2 MUTATED 5 1 2
CNKSR2 WILD-TYPE 116 36 84
'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.94

Table S3199.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CNKSR2 MUTATED 7 0 4
CNKSR2 WILD-TYPE 157 13 76
'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 0.87

Table S3200.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CNKSR2 MUTATED 1 6 0 4
CNKSR2 WILD-TYPE 48 96 4 98
'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S3201.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CNKSR2 MUTATED 0 11 1
CNKSR2 WILD-TYPE 26 168 83
'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S3202.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CNKSR2 MUTATED 4 2 6 0 0
CNKSR2 WILD-TYPE 65 56 106 1 49
'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3203.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CNKSR2 MUTATED 0 6 1
CNKSR2 WILD-TYPE 18 92 94
'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.73

Table S3204.  Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CNKSR2 MUTATED 0 1 5 1 0
CNKSR2 WILD-TYPE 17 33 85 68 1
'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.016

Table S3205.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
UHRF1BP1 MUTATED 0 0 15
UHRF1BP1 WILD-TYPE 80 55 137

Figure S862.  Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S3206.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
UHRF1BP1 MUTATED 9 0 4
UHRF1BP1 WILD-TYPE 112 37 82
'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.35

Table S3207.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
UHRF1BP1 MUTATED 9 2 2
UHRF1BP1 WILD-TYPE 155 11 78
'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.21

Table S3208.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
UHRF1BP1 MUTATED 0 8 1 4
UHRF1BP1 WILD-TYPE 49 94 3 98

Figure S863.  Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.59

Table S3209.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UHRF1BP1 MUTATED 0 12 3
UHRF1BP1 WILD-TYPE 26 167 81
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00883 (Fisher's exact test), Q value = 0.094

Table S3210.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UHRF1BP1 MUTATED 0 5 10 0 0
UHRF1BP1 WILD-TYPE 69 53 102 1 49

Figure S864.  Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.29

Table S3211.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
UHRF1BP1 MUTATED 1 9 2
UHRF1BP1 WILD-TYPE 17 89 93
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S3212.  Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
UHRF1BP1 MUTATED 0 2 9 1 0
UHRF1BP1 WILD-TYPE 17 32 81 68 1
'OR7C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S3213.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OR7C1 MUTATED 0 0 5
OR7C1 WILD-TYPE 80 55 147
'OR7C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S3214.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OR7C1 MUTATED 5 0 0
OR7C1 WILD-TYPE 116 37 86
'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S3215.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OR7C1 MUTATED 5 0 0
OR7C1 WILD-TYPE 159 13 80
'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.24

Table S3216.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OR7C1 MUTATED 0 5 0 0
OR7C1 WILD-TYPE 49 97 4 102
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.91

Table S3217.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OR7C1 MUTATED 0 5 1
OR7C1 WILD-TYPE 26 174 83
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S3218.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OR7C1 MUTATED 0 2 4 0 0
OR7C1 WILD-TYPE 69 56 108 1 49
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S3219.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OR7C1 MUTATED 0 4 1
OR7C1 WILD-TYPE 18 94 94
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S3220.  Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OR7C1 MUTATED 0 2 2 1 0
OR7C1 WILD-TYPE 17 32 88 68 1
'ABLIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.17

Table S3221.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ABLIM2 MUTATED 0 1 9
ABLIM2 WILD-TYPE 80 54 143

Figure S865.  Get High-res Image Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABLIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.84

Table S3222.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ABLIM2 MUTATED 6 1 2
ABLIM2 WILD-TYPE 115 36 84
'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S3223.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ABLIM2 MUTATED 7 1 1
ABLIM2 WILD-TYPE 157 12 79
'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S3224.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ABLIM2 MUTATED 0 7 0 2
ABLIM2 WILD-TYPE 49 95 4 100
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S3225.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ABLIM2 MUTATED 0 9 2
ABLIM2 WILD-TYPE 26 170 82
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S3226.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ABLIM2 MUTATED 1 5 5 0 0
ABLIM2 WILD-TYPE 68 53 107 1 49
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S3227.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ABLIM2 MUTATED 0 7 2
ABLIM2 WILD-TYPE 18 91 93
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.68

Table S3228.  Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ABLIM2 MUTATED 0 3 4 2 0
ABLIM2 WILD-TYPE 17 31 86 67 1
'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.8

Table S3229.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TPTE2 MUTATED 4 1 5
TPTE2 WILD-TYPE 76 54 147
'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.7

Table S3230.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TPTE2 MUTATED 3 2 3
TPTE2 WILD-TYPE 118 35 83
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.86

Table S3231.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TPTE2 MUTATED 5 0 1
TPTE2 WILD-TYPE 159 13 79
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.87

Table S3232.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TPTE2 MUTATED 2 2 0 2
TPTE2 WILD-TYPE 47 100 4 100
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S3233.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TPTE2 MUTATED 0 8 2
TPTE2 WILD-TYPE 26 171 82
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.67

Table S3234.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TPTE2 MUTATED 3 3 4 0 0
TPTE2 WILD-TYPE 66 55 108 1 49
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.52

Table S3235.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TPTE2 MUTATED 1 2 4
TPTE2 WILD-TYPE 17 96 91
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S3236.  Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TPTE2 MUTATED 1 1 4 1 0
TPTE2 WILD-TYPE 16 33 86 68 1
'OLFML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S3237.  Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OLFML3 MUTATED 0 0 4
OLFML3 WILD-TYPE 80 55 148
'OLFML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3238.  Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OLFML3 MUTATED 2 0 1
OLFML3 WILD-TYPE 119 37 85
'OLFML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3239.  Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OLFML3 MUTATED 0 4 0
OLFML3 WILD-TYPE 26 175 84
'OLFML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S3240.  Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OLFML3 MUTATED 0 2 2 0 0
OLFML3 WILD-TYPE 69 56 110 1 49
'RINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3241.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RINT1 MUTATED 0 0 5
RINT1 WILD-TYPE 80 55 147
'RINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S3242.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RINT1 MUTATED 5 0 0
RINT1 WILD-TYPE 116 37 86
'RINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S3243.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RINT1 MUTATED 5 0 0
RINT1 WILD-TYPE 159 13 80
'RINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.24

Table S3244.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RINT1 MUTATED 0 5 0 0
RINT1 WILD-TYPE 49 97 4 102
'RINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S3245.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RINT1 MUTATED 0 5 0
RINT1 WILD-TYPE 26 174 84
'RINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S3246.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RINT1 MUTATED 0 2 3 0 0
RINT1 WILD-TYPE 69 56 109 1 49
'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.25

Table S3247.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RINT1 MUTATED 1 4 0
RINT1 WILD-TYPE 17 94 95
'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S3248.  Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RINT1 MUTATED 0 1 4 0 0
RINT1 WILD-TYPE 17 33 86 69 1
'CA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S3249.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CA2 MUTATED 0 0 5
CA2 WILD-TYPE 80 55 147
'CA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S3250.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CA2 MUTATED 4 1 0
CA2 WILD-TYPE 117 36 86
'CA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S3251.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CA2 MUTATED 5 0 0
CA2 WILD-TYPE 159 13 80
'CA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.24

Table S3252.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CA2 MUTATED 0 5 0 0
CA2 WILD-TYPE 49 97 4 102
'CA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S3253.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CA2 MUTATED 0 5 0
CA2 WILD-TYPE 26 174 84
'CA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.18

Table S3254.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CA2 MUTATED 0 4 1 0 0
CA2 WILD-TYPE 69 54 111 1 49

Figure S866.  Get High-res Image Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S3255.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CA2 MUTATED 0 5 0
CA2 WILD-TYPE 18 93 95
'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S3256.  Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CA2 MUTATED 0 4 1 0 0
CA2 WILD-TYPE 17 30 89 69 1

Figure S867.  Get High-res Image Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S3257.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IRS1 MUTATED 2 1 17
IRS1 WILD-TYPE 78 54 135

Figure S868.  Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S3258.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IRS1 MUTATED 11 0 6
IRS1 WILD-TYPE 110 37 80
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.75

Table S3259.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IRS1 MUTATED 13 1 4
IRS1 WILD-TYPE 151 12 76
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S3260.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IRS1 MUTATED 0 13 0 5
IRS1 WILD-TYPE 49 89 4 97

Figure S869.  Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.28

Table S3261.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IRS1 MUTATED 0 17 3
IRS1 WILD-TYPE 26 162 81
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.29

Table S3262.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IRS1 MUTATED 1 7 10 0 2
IRS1 WILD-TYPE 68 51 102 1 47
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S3263.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IRS1 MUTATED 1 12 2
IRS1 WILD-TYPE 17 86 93

Figure S870.  Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0551 (Fisher's exact test), Q value = 0.23

Table S3264.  Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IRS1 MUTATED 0 3 11 1 0
IRS1 WILD-TYPE 17 31 79 68 1
'FKBP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S3265.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FKBP9 MUTATED 0 0 6
FKBP9 WILD-TYPE 80 55 146
'FKBP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S3266.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FKBP9 MUTATED 4 0 1
FKBP9 WILD-TYPE 117 37 85
'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3267.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FKBP9 MUTATED 4 0 2
FKBP9 WILD-TYPE 160 13 78
'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S3268.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FKBP9 MUTATED 0 4 0 2
FKBP9 WILD-TYPE 49 98 4 100
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.91

Table S3269.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FKBP9 MUTATED 0 5 1
FKBP9 WILD-TYPE 26 174 83
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S3270.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FKBP9 MUTATED 0 3 2 0 1
FKBP9 WILD-TYPE 69 55 110 1 48
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3271.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FKBP9 MUTATED 0 2 2
FKBP9 WILD-TYPE 18 96 93
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 0.87

Table S3272.  Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FKBP9 MUTATED 0 0 3 1 0
FKBP9 WILD-TYPE 17 34 87 68 1
'LMTK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.23

Table S3273.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LMTK3 MUTATED 0 0 7
LMTK3 WILD-TYPE 80 55 145
'LMTK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.86

Table S3274.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LMTK3 MUTATED 4 0 3
LMTK3 WILD-TYPE 117 37 83
'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S3275.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LMTK3 MUTATED 7 0 1
LMTK3 WILD-TYPE 157 13 79
'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S3276.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LMTK3 MUTATED 1 6 0 1
LMTK3 WILD-TYPE 48 96 4 101
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S3277.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LMTK3 MUTATED 1 7 0
LMTK3 WILD-TYPE 25 172 84
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S3278.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LMTK3 MUTATED 1 4 3 0 0
LMTK3 WILD-TYPE 68 54 109 1 49
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.19

Table S3279.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LMTK3 MUTATED 1 6 0
LMTK3 WILD-TYPE 17 92 95

Figure S871.  Get High-res Image Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.29

Table S3280.  Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LMTK3 MUTATED 1 3 3 0 0
LMTK3 WILD-TYPE 16 31 87 69 1
'DNAH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.11

Table S3281.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DNAH5 MUTATED 7 11 37
DNAH5 WILD-TYPE 73 44 115

Figure S872.  Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.065

Table S3282.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DNAH5 MUTATED 33 4 9
DNAH5 WILD-TYPE 88 33 77

Figure S873.  Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S3283.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DNAH5 MUTATED 38 2 11
DNAH5 WILD-TYPE 126 11 69
'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S3284.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DNAH5 MUTATED 6 26 0 19
DNAH5 WILD-TYPE 43 76 4 83
'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S3285.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DNAH5 MUTATED 2 48 6
DNAH5 WILD-TYPE 24 131 78

Figure S874.  Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.012

Table S3286.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DNAH5 MUTATED 7 21 23 1 4
DNAH5 WILD-TYPE 62 37 89 0 45

Figure S875.  Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.27

Table S3287.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DNAH5 MUTATED 3 26 13
DNAH5 WILD-TYPE 15 72 82
'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.012

Table S3288.  Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DNAH5 MUTATED 2 8 27 4 1
DNAH5 WILD-TYPE 15 26 63 65 0

Figure S876.  Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.23

Table S3289.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPATCH2 MUTATED 0 0 7
GPATCH2 WILD-TYPE 80 55 145
'GPATCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S3290.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPATCH2 MUTATED 4 0 1
GPATCH2 WILD-TYPE 117 37 85
'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.86

Table S3291.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPATCH2 MUTATED 5 0 1
GPATCH2 WILD-TYPE 159 13 79
'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S3292.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPATCH2 MUTATED 0 5 0 1
GPATCH2 WILD-TYPE 49 97 4 101
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S3293.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPATCH2 MUTATED 0 6 1
GPATCH2 WILD-TYPE 26 173 83
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.15

Table S3294.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPATCH2 MUTATED 0 5 1 0 1
GPATCH2 WILD-TYPE 69 53 111 1 48

Figure S877.  Get High-res Image Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.64

Table S3295.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPATCH2 MUTATED 0 4 1
GPATCH2 WILD-TYPE 18 94 94
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S3296.  Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPATCH2 MUTATED 0 1 3 1 0
GPATCH2 WILD-TYPE 17 33 87 68 1
'KCNH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.5

Table S3297.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KCNH2 MUTATED 2 1 10
KCNH2 WILD-TYPE 78 54 142
'KCNH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S3298.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KCNH2 MUTATED 6 2 1
KCNH2 WILD-TYPE 115 35 85
'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.13

Table S3299.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KCNH2 MUTATED 12 1 0
KCNH2 WILD-TYPE 152 12 80

Figure S878.  Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.23

Table S3300.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KCNH2 MUTATED 1 10 0 2
KCNH2 WILD-TYPE 48 92 4 100
'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S3301.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KCNH2 MUTATED 0 13 0
KCNH2 WILD-TYPE 26 166 84

Figure S879.  Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00737 (Fisher's exact test), Q value = 0.085

Table S3302.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KCNH2 MUTATED 1 8 4 0 0
KCNH2 WILD-TYPE 68 50 108 1 49

Figure S880.  Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 0.21

Table S3303.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KCNH2 MUTATED 0 8 1
KCNH2 WILD-TYPE 18 90 94

Figure S881.  Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S3304.  Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KCNH2 MUTATED 0 5 4 0 0
KCNH2 WILD-TYPE 17 29 86 69 1

Figure S882.  Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.23

Table S3305.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SGOL2 MUTATED 0 2 9
SGOL2 WILD-TYPE 80 53 143
'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.84

Table S3306.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SGOL2 MUTATED 6 1 2
SGOL2 WILD-TYPE 115 36 84
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.56

Table S3307.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SGOL2 MUTATED 8 0 1
SGOL2 WILD-TYPE 156 13 79
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S3308.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SGOL2 MUTATED 0 6 0 3
SGOL2 WILD-TYPE 49 96 4 99
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S3309.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SGOL2 MUTATED 0 10 1
SGOL2 WILD-TYPE 26 169 83
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S3310.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SGOL2 MUTATED 1 4 5 0 1
SGOL2 WILD-TYPE 68 54 107 1 48
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3311.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SGOL2 MUTATED 1 5 2
SGOL2 WILD-TYPE 17 93 93
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S3312.  Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SGOL2 MUTATED 0 1 5 2 0
SGOL2 WILD-TYPE 17 33 85 67 1
'ADAMTSL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0034 (Fisher's exact test), Q value = 0.056

Table S3313.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ADAMTSL4 MUTATED 0 1 14
ADAMTSL4 WILD-TYPE 80 54 138

Figure S883.  Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S3314.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ADAMTSL4 MUTATED 10 0 1
ADAMTSL4 WILD-TYPE 111 37 85

Figure S884.  Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.15

Table S3315.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ADAMTSL4 MUTATED 12 0 0
ADAMTSL4 WILD-TYPE 152 13 80

Figure S885.  Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.057

Table S3316.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ADAMTSL4 MUTATED 0 11 0 1
ADAMTSL4 WILD-TYPE 49 91 4 101

Figure S886.  Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.19

Table S3317.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ADAMTSL4 MUTATED 0 14 1
ADAMTSL4 WILD-TYPE 26 165 83

Figure S887.  Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.17

Table S3318.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ADAMTSL4 MUTATED 1 8 5 0 1
ADAMTSL4 WILD-TYPE 68 50 107 1 48

Figure S888.  Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S3319.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ADAMTSL4 MUTATED 0 8 2
ADAMTSL4 WILD-TYPE 18 90 93
'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S3320.  Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ADAMTSL4 MUTATED 0 4 5 1 0
ADAMTSL4 WILD-TYPE 17 30 85 68 1
'CPB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.17

Table S3321.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CPB2 MUTATED 0 0 8
CPB2 WILD-TYPE 80 55 144

Figure S889.  Get High-res Image Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CPB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S3322.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CPB2 MUTATED 6 0 1
CPB2 WILD-TYPE 115 37 85
'CPB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3323.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CPB2 MUTATED 5 0 2
CPB2 WILD-TYPE 159 13 78
'CPB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S3324.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CPB2 MUTATED 0 5 0 2
CPB2 WILD-TYPE 49 97 4 100
'CPB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S3325.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CPB2 MUTATED 0 8 1
CPB2 WILD-TYPE 26 171 83
'CPB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.27

Table S3326.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CPB2 MUTATED 0 4 5 0 0
CPB2 WILD-TYPE 69 54 107 1 49
'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S3327.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CPB2 MUTATED 1 4 2
CPB2 WILD-TYPE 17 94 93
'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S3328.  Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CPB2 MUTATED 0 1 5 1 0
CPB2 WILD-TYPE 17 33 85 68 1
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.17

Table S3329.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
THEMIS MUTATED 0 0 8
THEMIS WILD-TYPE 80 55 144

Figure S890.  Get High-res Image Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S3330.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
THEMIS MUTATED 4 0 1
THEMIS WILD-TYPE 117 37 85
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S3331.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
THEMIS MUTATED 3 1 1
THEMIS WILD-TYPE 161 12 79
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 0.94

Table S3332.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
THEMIS MUTATED 0 3 0 2
THEMIS WILD-TYPE 49 99 4 100
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S3333.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
THEMIS MUTATED 0 7 1
THEMIS WILD-TYPE 26 172 83
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.23

Table S3334.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
THEMIS MUTATED 0 5 2 0 1
THEMIS WILD-TYPE 69 53 110 1 48
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.26

Table S3335.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
THEMIS MUTATED 1 4 0
THEMIS WILD-TYPE 17 94 95
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S3336.  Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
THEMIS MUTATED 0 2 3 0 0
THEMIS WILD-TYPE 17 32 87 69 1
'KRTAP10-9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S3337.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KRTAP10-9 MUTATED 1 0 8
KRTAP10-9 WILD-TYPE 79 55 144
'KRTAP10-9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S3338.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KRTAP10-9 MUTATED 6 0 1
KRTAP10-9 WILD-TYPE 115 37 85
'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S3339.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KRTAP10-9 MUTATED 5 1 1
KRTAP10-9 WILD-TYPE 159 12 79
'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S3340.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KRTAP10-9 MUTATED 0 5 0 2
KRTAP10-9 WILD-TYPE 49 97 4 100
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S3341.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KRTAP10-9 MUTATED 0 8 1
KRTAP10-9 WILD-TYPE 26 171 83
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.58

Table S3342.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KRTAP10-9 MUTATED 1 4 3 0 1
KRTAP10-9 WILD-TYPE 68 54 109 1 48
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.46

Table S3343.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KRTAP10-9 MUTATED 1 5 1
KRTAP10-9 WILD-TYPE 17 93 94
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S3344.  Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KRTAP10-9 MUTATED 0 2 4 1 0
KRTAP10-9 WILD-TYPE 17 32 86 68 1
'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S3345.  Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SGK3 MUTATED 0 1 4
SGK3 WILD-TYPE 80 54 148
'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.57

Table S3346.  Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SGK3 MUTATED 3 0 0
SGK3 WILD-TYPE 118 37 86
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3347.  Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SGK3 MUTATED 3 0 1
SGK3 WILD-TYPE 161 13 79
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S3348.  Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SGK3 MUTATED 0 3 0 1
SGK3 WILD-TYPE 49 99 4 101
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S3349.  Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SGK3 MUTATED 0 5 0
SGK3 WILD-TYPE 26 174 84
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S3350.  Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SGK3 MUTATED 0 2 3 0 0
SGK3 WILD-TYPE 69 56 109 1 49
'YIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S3351.  Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
YIF1A MUTATED 0 0 3
YIF1A WILD-TYPE 80 55 149
'YIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.74

Table S3352.  Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
YIF1A MUTATED 3 0 0
YIF1A WILD-TYPE 161 13 80
'YIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.47

Table S3353.  Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
YIF1A MUTATED 0 3 0 0
YIF1A WILD-TYPE 49 99 4 102
'YIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S3354.  Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
YIF1A MUTATED 0 3 0
YIF1A WILD-TYPE 26 176 84
'YIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.8

Table S3355.  Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
YIF1A MUTATED 0 1 2 0 0
YIF1A WILD-TYPE 69 57 110 1 49
'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.11

Table S3356.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EGR1 MUTATED 0 0 10
EGR1 WILD-TYPE 80 55 142

Figure S891.  Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S3357.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EGR1 MUTATED 7 0 1
EGR1 WILD-TYPE 114 37 85
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.28

Table S3358.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EGR1 MUTATED 7 1 0
EGR1 WILD-TYPE 157 12 80
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.079 (Fisher's exact test), Q value = 0.27

Table S3359.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EGR1 MUTATED 0 7 0 1
EGR1 WILD-TYPE 49 95 4 101
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S3360.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EGR1 MUTATED 0 9 1
EGR1 WILD-TYPE 26 170 83
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.23

Table S3361.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EGR1 MUTATED 1 6 2 0 1
EGR1 WILD-TYPE 68 52 110 1 48
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.27

Table S3362.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EGR1 MUTATED 0 7 1
EGR1 WILD-TYPE 18 91 94
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S3363.  Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EGR1 MUTATED 0 2 5 1 0
EGR1 WILD-TYPE 17 32 85 68 1
'GTF3C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00312 (Fisher's exact test), Q value = 0.053

Table S3364.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GTF3C4 MUTATED 0 0 12
GTF3C4 WILD-TYPE 80 55 140

Figure S892.  Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.18

Table S3365.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GTF3C4 MUTATED 9 0 1
GTF3C4 WILD-TYPE 112 37 85

Figure S893.  Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S3366.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GTF3C4 MUTATED 7 1 2
GTF3C4 WILD-TYPE 157 12 78
'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S3367.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GTF3C4 MUTATED 0 7 0 3
GTF3C4 WILD-TYPE 49 95 4 99
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S3368.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GTF3C4 MUTATED 0 10 2
GTF3C4 WILD-TYPE 26 169 82
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S3369.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GTF3C4 MUTATED 0 6 6 0 0
GTF3C4 WILD-TYPE 69 52 106 1 49

Figure S894.  Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.21

Table S3370.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GTF3C4 MUTATED 0 8 1
GTF3C4 WILD-TYPE 18 90 94

Figure S895.  Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S3371.  Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GTF3C4 MUTATED 0 4 4 1 0
GTF3C4 WILD-TYPE 17 30 86 68 1
'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.17

Table S3372.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ACTL6A MUTATED 0 0 8
ACTL6A WILD-TYPE 80 55 144

Figure S896.  Get High-res Image Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTL6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S3373.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ACTL6A MUTATED 8 0 0
ACTL6A WILD-TYPE 113 37 86

Figure S897.  Get High-res Image Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.27

Table S3374.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ACTL6A MUTATED 5 1 0
ACTL6A WILD-TYPE 159 12 80
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S3375.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ACTL6A MUTATED 1 5 0 0
ACTL6A WILD-TYPE 48 97 4 102
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3376.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ACTL6A MUTATED 1 6 1
ACTL6A WILD-TYPE 25 173 83
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.13

Table S3377.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ACTL6A MUTATED 0 2 4 1 1
ACTL6A WILD-TYPE 69 56 108 0 48

Figure S898.  Get High-res Image Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S3378.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ACTL6A MUTATED 1 6 1
ACTL6A WILD-TYPE 17 92 94
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.2

Table S3379.  Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ACTL6A MUTATED 0 1 5 1 1
ACTL6A WILD-TYPE 17 33 85 68 0

Figure S899.  Get High-res Image Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C7ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S3380.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C7ORF49 MUTATED 0 1 6
C7ORF49 WILD-TYPE 80 54 146
'C7ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S3381.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C7ORF49 MUTATED 7 0 0
C7ORF49 WILD-TYPE 114 37 86

Figure S900.  Get High-res Image Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S3382.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C7ORF49 MUTATED 6 0 1
C7ORF49 WILD-TYPE 158 13 79
'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S3383.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C7ORF49 MUTATED 0 6 0 1
C7ORF49 WILD-TYPE 49 96 4 101
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S3384.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C7ORF49 MUTATED 0 7 0
C7ORF49 WILD-TYPE 26 172 84
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S3385.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C7ORF49 MUTATED 1 4 2 0 0
C7ORF49 WILD-TYPE 68 54 110 1 49
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S3386.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C7ORF49 MUTATED 0 4 0
C7ORF49 WILD-TYPE 18 94 95
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S3387.  Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C7ORF49 MUTATED 0 1 3 0 0
C7ORF49 WILD-TYPE 17 33 87 69 1
'BEST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S3388.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BEST3 MUTATED 4 1 6
BEST3 WILD-TYPE 76 54 146
'BEST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 0.93

Table S3389.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BEST3 MUTATED 2 1 2
BEST3 WILD-TYPE 119 36 84
'BEST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S3390.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BEST3 MUTATED 6 1 1
BEST3 WILD-TYPE 158 12 79
'BEST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.75

Table S3391.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BEST3 MUTATED 1 5 0 2
BEST3 WILD-TYPE 48 97 4 100
'BEST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.56

Table S3392.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BEST3 MUTATED 2 7 2
BEST3 WILD-TYPE 24 172 82
'BEST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S3393.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BEST3 MUTATED 2 3 4 0 2
BEST3 WILD-TYPE 67 55 108 1 47
'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 0.89

Table S3394.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BEST3 MUTATED 0 2 3
BEST3 WILD-TYPE 18 96 92
'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S3395.  Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BEST3 MUTATED 0 2 1 2 0
BEST3 WILD-TYPE 17 32 89 67 1
'STX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S3396.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STX2 MUTATED 0 2 4
STX2 WILD-TYPE 80 53 148
'STX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.22

Table S3397.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STX2 MUTATED 6 0 0
STX2 WILD-TYPE 115 37 86
'STX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S3398.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STX2 MUTATED 5 0 0
STX2 WILD-TYPE 159 13 80
'STX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.44

Table S3399.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STX2 MUTATED 1 4 0 0
STX2 WILD-TYPE 48 98 4 102
'STX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S3400.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STX2 MUTATED 1 4 1
STX2 WILD-TYPE 25 175 83
'STX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S3401.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STX2 MUTATED 0 2 3 0 1
STX2 WILD-TYPE 69 56 109 1 48
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.28

Table S3402.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STX2 MUTATED 2 3 1
STX2 WILD-TYPE 16 95 94
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S3403.  Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STX2 MUTATED 0 3 2 1 0
STX2 WILD-TYPE 17 31 88 68 1
'ARHGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3404.  Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARHGEF5 MUTATED 0 0 5
ARHGEF5 WILD-TYPE 80 55 147
'ARHGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S3405.  Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARHGEF5 MUTATED 3 0 0
ARHGEF5 WILD-TYPE 118 37 86
'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3406.  Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARHGEF5 MUTATED 4 0 1
ARHGEF5 WILD-TYPE 160 13 79
'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.94

Table S3407.  Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARHGEF5 MUTATED 0 3 0 2
ARHGEF5 WILD-TYPE 49 99 4 100
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3408.  Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARHGEF5 MUTATED 0 4 1
ARHGEF5 WILD-TYPE 26 175 83
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S3409.  Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARHGEF5 MUTATED 0 3 2 0 0
ARHGEF5 WILD-TYPE 69 55 110 1 49
'FAM92B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3410.  Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM92B MUTATED 1 0 2
FAM92B WILD-TYPE 79 55 150
'FAM92B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S3411.  Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM92B MUTATED 2 1 0
FAM92B WILD-TYPE 119 36 86
'FAM92B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S3412.  Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM92B MUTATED 2 1 0
FAM92B WILD-TYPE 162 12 80
'FAM92B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S3413.  Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM92B MUTATED 1 2 0 0
FAM92B WILD-TYPE 48 100 4 102
'FAM92B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S3414.  Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM92B MUTATED 1 2 0
FAM92B WILD-TYPE 25 177 84
'FAM92B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3415.  Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM92B MUTATED 1 1 1 0 0
FAM92B WILD-TYPE 68 57 111 1 49
'BRSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.23

Table S3416.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BRSK1 MUTATED 0 2 9
BRSK1 WILD-TYPE 80 53 143
'BRSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.81

Table S3417.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BRSK1 MUTATED 7 1 3
BRSK1 WILD-TYPE 114 36 83
'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.28

Table S3418.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BRSK1 MUTATED 8 2 2
BRSK1 WILD-TYPE 156 11 78
'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S3419.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BRSK1 MUTATED 1 7 0 4
BRSK1 WILD-TYPE 48 95 4 98
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S3420.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BRSK1 MUTATED 0 10 2
BRSK1 WILD-TYPE 26 169 82
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.37

Table S3421.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BRSK1 MUTATED 0 4 6 0 2
BRSK1 WILD-TYPE 69 54 106 1 47
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.9

Table S3422.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BRSK1 MUTATED 1 4 5
BRSK1 WILD-TYPE 17 94 90
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S3423.  Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BRSK1 MUTATED 0 2 7 1 0
BRSK1 WILD-TYPE 17 32 83 68 1
'KIAA1804 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S3424.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1804 MUTATED 2 0 5
KIAA1804 WILD-TYPE 78 55 147
'KIAA1804 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S3425.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1804 MUTATED 4 0 1
KIAA1804 WILD-TYPE 117 37 85
'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.91

Table S3426.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1804 MUTATED 5 0 3
KIAA1804 WILD-TYPE 159 13 77
'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3427.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1804 MUTATED 1 4 0 3
KIAA1804 WILD-TYPE 48 98 4 99
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.28

Table S3428.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1804 MUTATED 0 8 0
KIAA1804 WILD-TYPE 26 171 84
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S3429.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1804 MUTATED 3 3 2 0 0
KIAA1804 WILD-TYPE 66 55 110 1 49
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.73

Table S3430.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1804 MUTATED 1 2 2
KIAA1804 WILD-TYPE 17 96 93
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S3431.  Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1804 MUTATED 0 1 4 0 0
KIAA1804 WILD-TYPE 17 33 86 69 1
'ZNF711 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S3432.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF711 MUTATED 1 2 10
ZNF711 WILD-TYPE 79 53 142
'ZNF711 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.086

Table S3433.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF711 MUTATED 9 0 0
ZNF711 WILD-TYPE 112 37 86

Figure S901.  Get High-res Image Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S3434.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF711 MUTATED 9 0 1
ZNF711 WILD-TYPE 155 13 79
'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S3435.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF711 MUTATED 2 6 0 2
ZNF711 WILD-TYPE 47 96 4 100
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.41

Table S3436.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF711 MUTATED 1 11 1
ZNF711 WILD-TYPE 25 168 83
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S3437.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF711 MUTATED 0 6 7 0 0
ZNF711 WILD-TYPE 69 52 105 1 49

Figure S902.  Get High-res Image Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S3438.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF711 MUTATED 2 3 2
ZNF711 WILD-TYPE 16 95 93
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.57

Table S3439.  Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF711 MUTATED 1 2 3 1 0
ZNF711 WILD-TYPE 16 32 87 68 1
'HCRTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S3440.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HCRTR2 MUTATED 0 1 7
HCRTR2 WILD-TYPE 80 54 145
'HCRTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.96

Table S3441.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HCRTR2 MUTATED 3 1 3
HCRTR2 WILD-TYPE 118 36 83
'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S3442.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HCRTR2 MUTATED 5 0 4
HCRTR2 WILD-TYPE 159 13 76
'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3443.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HCRTR2 MUTATED 1 4 0 4
HCRTR2 WILD-TYPE 48 98 4 98
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 0.87

Table S3444.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HCRTR2 MUTATED 0 7 2
HCRTR2 WILD-TYPE 26 172 82
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S3445.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HCRTR2 MUTATED 1 3 5 0 0
HCRTR2 WILD-TYPE 68 55 107 1 49
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.2

Table S3446.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HCRTR2 MUTATED 0 6 0
HCRTR2 WILD-TYPE 18 92 95

Figure S903.  Get High-res Image Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S3447.  Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HCRTR2 MUTATED 0 2 4 0 0
HCRTR2 WILD-TYPE 17 32 86 69 1
'OR51A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.95

Table S3448.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OR51A7 MUTATED 1 1 4
OR51A7 WILD-TYPE 79 54 148
'OR51A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.25

Table S3449.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OR51A7 MUTATED 1 0 5
OR51A7 WILD-TYPE 120 37 81
'OR51A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3450.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OR51A7 MUTATED 4 0 2
OR51A7 WILD-TYPE 160 13 78
'OR51A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.65

Table S3451.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OR51A7 MUTATED 1 1 0 4
OR51A7 WILD-TYPE 48 101 4 98
'OR51A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.59

Table S3452.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OR51A7 MUTATED 1 3 2
OR51A7 WILD-TYPE 25 176 82
'OR51A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.86

Table S3453.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OR51A7 MUTATED 2 0 3 0 1
OR51A7 WILD-TYPE 67 58 109 1 48
'OR51A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S3454.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OR51A7 MUTATED 1 1 4
OR51A7 WILD-TYPE 17 97 91
'OR51A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S3455.  Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OR51A7 MUTATED 1 0 2 3 0
OR51A7 WILD-TYPE 16 34 88 66 1
'C2ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.26

Table S3456.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C2ORF42 MUTATED 1 1 11
C2ORF42 WILD-TYPE 79 54 141
'C2ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S3457.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C2ORF42 MUTATED 8 1 0
C2ORF42 WILD-TYPE 113 36 86

Figure S904.  Get High-res Image Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.63

Table S3458.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C2ORF42 MUTATED 10 1 3
C2ORF42 WILD-TYPE 154 12 77
'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00161 (Fisher's exact test), Q value = 0.035

Table S3459.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C2ORF42 MUTATED 0 9 2 3
C2ORF42 WILD-TYPE 49 93 2 99

Figure S905.  Get High-res Image Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.81

Table S3460.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C2ORF42 MUTATED 0 10 4
C2ORF42 WILD-TYPE 26 169 80
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S3461.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C2ORF42 MUTATED 1 6 6 0 1
C2ORF42 WILD-TYPE 68 52 106 1 48
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.95

Table S3462.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C2ORF42 MUTATED 0 5 3
C2ORF42 WILD-TYPE 18 93 92
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.85

Table S3463.  Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C2ORF42 MUTATED 0 2 4 2 0
C2ORF42 WILD-TYPE 17 32 86 67 1
'KCTD21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.23

Table S3464.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KCTD21 MUTATED 0 0 7
KCTD21 WILD-TYPE 80 55 145
'KCTD21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.93

Table S3465.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KCTD21 MUTATED 2 1 2
KCTD21 WILD-TYPE 119 36 84
'KCTD21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S3466.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KCTD21 MUTATED 3 0 4
KCTD21 WILD-TYPE 161 13 76
'KCTD21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.72

Table S3467.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KCTD21 MUTATED 0 3 0 4
KCTD21 WILD-TYPE 49 99 4 98
'KCTD21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S3468.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KCTD21 MUTATED 0 7 0
KCTD21 WILD-TYPE 26 172 84
'KCTD21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 0.27

Table S3469.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KCTD21 MUTATED 0 4 3 0 0
KCTD21 WILD-TYPE 69 54 109 1 49
'KCTD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S3470.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KCTD21 MUTATED 0 5 0
KCTD21 WILD-TYPE 18 93 95
'KCTD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S3471.  Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KCTD21 MUTATED 0 1 4 0 0
KCTD21 WILD-TYPE 17 33 86 69 1
'SEZ6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.18

Table S3472.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SEZ6 MUTATED 0 1 9
SEZ6 WILD-TYPE 80 54 143

Figure S906.  Get High-res Image Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SEZ6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00734 (Fisher's exact test), Q value = 0.085

Table S3473.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SEZ6 MUTATED 9 0 0
SEZ6 WILD-TYPE 112 37 86

Figure S907.  Get High-res Image Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3474.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SEZ6 MUTATED 6 0 2
SEZ6 WILD-TYPE 158 13 78
'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S3475.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SEZ6 MUTATED 0 6 0 2
SEZ6 WILD-TYPE 49 96 4 100
'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S3476.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SEZ6 MUTATED 0 8 2
SEZ6 WILD-TYPE 26 171 82
'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.26

Table S3477.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SEZ6 MUTATED 0 5 3 0 2
SEZ6 WILD-TYPE 69 53 109 1 47
'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S3478.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SEZ6 MUTATED 0 6 2
SEZ6 WILD-TYPE 18 92 93
'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S3479.  Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SEZ6 MUTATED 0 4 3 1 0
SEZ6 WILD-TYPE 17 30 87 68 1
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S3480.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C7ORF58 MUTATED 1 2 11
C7ORF58 WILD-TYPE 79 53 141
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00588 (Fisher's exact test), Q value = 0.075

Table S3481.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C7ORF58 MUTATED 11 2 0
C7ORF58 WILD-TYPE 110 35 86

Figure S908.  Get High-res Image Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.56

Table S3482.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C7ORF58 MUTATED 11 0 2
C7ORF58 WILD-TYPE 153 13 78
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S3483.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C7ORF58 MUTATED 2 9 0 2
C7ORF58 WILD-TYPE 47 93 4 100
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.59

Table S3484.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C7ORF58 MUTATED 0 12 3
C7ORF58 WILD-TYPE 26 167 81
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.35

Table S3485.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C7ORF58 MUTATED 2 7 5 0 1
C7ORF58 WILD-TYPE 67 51 107 1 48
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S3486.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C7ORF58 MUTATED 1 8 3
C7ORF58 WILD-TYPE 17 90 92
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S3487.  Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C7ORF58 MUTATED 1 4 5 2 0
C7ORF58 WILD-TYPE 16 30 85 67 1
'STK38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S3488.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STK38 MUTATED 0 1 5
STK38 WILD-TYPE 80 54 147
'STK38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S3489.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STK38 MUTATED 4 0 1
STK38 WILD-TYPE 117 37 85
'STK38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.86

Table S3490.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STK38 MUTATED 5 0 1
STK38 WILD-TYPE 159 13 79
'STK38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S3491.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STK38 MUTATED 0 5 0 1
STK38 WILD-TYPE 49 97 4 101
'STK38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.51

Table S3492.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STK38 MUTATED 0 6 0
STK38 WILD-TYPE 26 173 84
'STK38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.25

Table S3493.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STK38 MUTATED 0 4 2 0 0
STK38 WILD-TYPE 69 54 110 1 49
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S3494.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STK38 MUTATED 0 5 0
STK38 WILD-TYPE 18 93 95
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S3495.  Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STK38 MUTATED 0 2 3 0 0
STK38 WILD-TYPE 17 32 87 69 1
'PTPN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.17

Table S3496.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PTPN4 MUTATED 0 0 8
PTPN4 WILD-TYPE 80 55 144

Figure S909.  Get High-res Image Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S3497.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PTPN4 MUTATED 5 0 0
PTPN4 WILD-TYPE 116 37 86
'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S3498.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PTPN4 MUTATED 6 0 1
PTPN4 WILD-TYPE 158 13 79
'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S3499.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PTPN4 MUTATED 0 6 0 1
PTPN4 WILD-TYPE 49 96 4 101
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.27

Table S3500.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PTPN4 MUTATED 0 9 0
PTPN4 WILD-TYPE 26 170 84
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.26

Table S3501.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PTPN4 MUTATED 0 4 5 0 0
PTPN4 WILD-TYPE 69 54 107 1 49
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.26

Table S3502.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PTPN4 MUTATED 1 4 0
PTPN4 WILD-TYPE 17 94 95
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S3503.  Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PTPN4 MUTATED 0 2 3 0 0
PTPN4 WILD-TYPE 17 32 87 69 1
'CTSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.95

Table S3504.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CTSD MUTATED 1 1 5
CTSD WILD-TYPE 79 54 147
'CTSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S3505.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CTSD MUTATED 5 1 1
CTSD WILD-TYPE 116 36 85
'CTSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S3506.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CTSD MUTATED 6 0 1
CTSD WILD-TYPE 158 13 79
'CTSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S3507.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CTSD MUTATED 0 6 0 1
CTSD WILD-TYPE 49 96 4 101
'CTSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S3508.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CTSD MUTATED 0 6 1
CTSD WILD-TYPE 26 173 83
'CTSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S3509.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CTSD MUTATED 1 5 1 0 0
CTSD WILD-TYPE 68 53 111 1 49

Figure S910.  Get High-res Image Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S3510.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CTSD MUTATED 0 6 1
CTSD WILD-TYPE 18 92 94
'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S3511.  Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CTSD MUTATED 0 3 3 1 0
CTSD WILD-TYPE 17 31 87 68 1
'EOMES MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.17

Table S3512.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EOMES MUTATED 0 0 8
EOMES WILD-TYPE 80 55 144

Figure S911.  Get High-res Image Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EOMES MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S3513.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EOMES MUTATED 4 0 1
EOMES WILD-TYPE 117 37 85
'EOMES MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S3514.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EOMES MUTATED 3 0 4
EOMES WILD-TYPE 161 13 76
'EOMES MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.72

Table S3515.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EOMES MUTATED 0 3 0 4
EOMES WILD-TYPE 49 99 4 98
'EOMES MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.95

Table S3516.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EOMES MUTATED 0 5 3
EOMES WILD-TYPE 26 174 81
'EOMES MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S3517.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EOMES MUTATED 1 3 2 0 2
EOMES WILD-TYPE 68 55 110 1 47
'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3518.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EOMES MUTATED 0 3 2
EOMES WILD-TYPE 18 95 93
'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3519.  Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EOMES MUTATED 0 1 2 2 0
EOMES WILD-TYPE 17 33 88 67 1
'AVPR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S3520.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AVPR1A MUTATED 1 0 11
AVPR1A WILD-TYPE 79 55 141

Figure S912.  Get High-res Image Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AVPR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S3521.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AVPR1A MUTATED 8 1 2
AVPR1A WILD-TYPE 113 36 84
'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.56

Table S3522.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AVPR1A MUTATED 8 0 1
AVPR1A WILD-TYPE 156 13 79
'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S3523.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AVPR1A MUTATED 1 7 0 1
AVPR1A WILD-TYPE 48 95 4 101
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S3524.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AVPR1A MUTATED 0 10 2
AVPR1A WILD-TYPE 26 169 82
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.32

Table S3525.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AVPR1A MUTATED 1 6 4 0 1
AVPR1A WILD-TYPE 68 52 108 1 48
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.23

Table S3526.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AVPR1A MUTATED 0 9 2
AVPR1A WILD-TYPE 18 89 93
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S3527.  Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AVPR1A MUTATED 0 2 7 2 0
AVPR1A WILD-TYPE 17 32 83 67 1
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S3528.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DDX43 MUTATED 2 0 8
DDX43 WILD-TYPE 78 55 144
'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S3529.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DDX43 MUTATED 6 0 1
DDX43 WILD-TYPE 115 37 85
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3530.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DDX43 MUTATED 6 0 3
DDX43 WILD-TYPE 158 13 77
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S3531.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DDX43 MUTATED 2 4 0 3
DDX43 WILD-TYPE 47 98 4 99
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.89

Table S3532.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DDX43 MUTATED 1 7 2
DDX43 WILD-TYPE 25 172 82
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S3533.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DDX43 MUTATED 2 4 4 0 0
DDX43 WILD-TYPE 67 54 108 1 49
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S3534.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DDX43 MUTATED 0 5 1
DDX43 WILD-TYPE 18 93 94
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.36

Table S3535.  Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DDX43 MUTATED 1 2 3 0 0
DDX43 WILD-TYPE 16 32 87 69 1
'OR4K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S3536.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OR4K5 MUTATED 2 1 8
OR4K5 WILD-TYPE 78 54 144
'OR4K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S3537.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OR4K5 MUTATED 8 2 1
OR4K5 WILD-TYPE 113 35 85
'OR4K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S3538.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OR4K5 MUTATED 9 0 1
OR4K5 WILD-TYPE 155 13 79
'OR4K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.26

Table S3539.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OR4K5 MUTATED 0 8 0 2
OR4K5 WILD-TYPE 49 94 4 100
'OR4K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S3540.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OR4K5 MUTATED 0 11 1
OR4K5 WILD-TYPE 26 168 83
'OR4K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.16

Table S3541.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OR4K5 MUTATED 2 7 3 0 0
OR4K5 WILD-TYPE 67 51 109 1 49

Figure S913.  Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3542.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OR4K5 MUTATED 1 6 1
OR4K5 WILD-TYPE 17 92 94
'OR4K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.17

Table S3543.  Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OR4K5 MUTATED 0 5 2 1 0
OR4K5 WILD-TYPE 17 29 88 68 1

Figure S914.  Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.23

Table S3544.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPR124 MUTATED 2 0 11
GPR124 WILD-TYPE 78 55 141
'GPR124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S3545.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPR124 MUTATED 8 0 2
GPR124 WILD-TYPE 113 37 84
'GPR124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S3546.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPR124 MUTATED 8 1 3
GPR124 WILD-TYPE 156 12 77
'GPR124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S3547.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPR124 MUTATED 0 8 0 4
GPR124 WILD-TYPE 49 94 4 98
'GPR124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S3548.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPR124 MUTATED 1 12 0
GPR124 WILD-TYPE 25 167 84

Figure S915.  Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S3549.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPR124 MUTATED 0 6 7 0 0
GPR124 WILD-TYPE 69 52 105 1 49

Figure S916.  Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.21

Table S3550.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPR124 MUTATED 0 8 1
GPR124 WILD-TYPE 18 90 94

Figure S917.  Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0955 (Fisher's exact test), Q value = 0.28

Table S3551.  Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPR124 MUTATED 0 2 7 0 0
GPR124 WILD-TYPE 17 32 83 69 1
'FAAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S3552.  Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAAH MUTATED 0 1 3
FAAH WILD-TYPE 80 54 149
'FAAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3553.  Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAAH MUTATED 2 0 1
FAAH WILD-TYPE 119 37 85
'FAAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S3554.  Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAAH MUTATED 1 0 2
FAAH WILD-TYPE 163 13 78
'FAAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3555.  Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAAH MUTATED 0 1 0 2
FAAH WILD-TYPE 49 101 4 100
'FAAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.84

Table S3556.  Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAAH MUTATED 0 2 2
FAAH WILD-TYPE 26 177 82
'FAAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S3557.  Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAAH MUTATED 0 1 3 0 0
FAAH WILD-TYPE 69 57 109 1 49
'EYA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S3558.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EYA4 MUTATED 2 3 10
EYA4 WILD-TYPE 78 52 142
'EYA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.88

Table S3559.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EYA4 MUTATED 5 2 5
EYA4 WILD-TYPE 116 35 81
'EYA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S3560.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EYA4 MUTATED 11 0 2
EYA4 WILD-TYPE 153 13 78
'EYA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S3561.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EYA4 MUTATED 2 8 0 3
EYA4 WILD-TYPE 47 94 4 99
'EYA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.92

Table S3562.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EYA4 MUTATED 1 11 3
EYA4 WILD-TYPE 25 168 81
'EYA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S3563.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EYA4 MUTATED 3 5 6 0 1
EYA4 WILD-TYPE 66 53 106 1 48
'EYA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S3564.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EYA4 MUTATED 1 5 2
EYA4 WILD-TYPE 17 93 93
'EYA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S3565.  Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EYA4 MUTATED 0 1 5 2 0
EYA4 WILD-TYPE 17 33 85 67 1
'ZNF701 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.7

Table S3566.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF701 MUTATED 1 1 6
ZNF701 WILD-TYPE 79 54 146
'ZNF701 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3567.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF701 MUTATED 4 1 2
ZNF701 WILD-TYPE 117 36 84
'ZNF701 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S3568.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF701 MUTATED 3 0 3
ZNF701 WILD-TYPE 161 13 77
'ZNF701 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3569.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF701 MUTATED 1 2 0 3
ZNF701 WILD-TYPE 48 100 4 99
'ZNF701 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S3570.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF701 MUTATED 1 5 2
ZNF701 WILD-TYPE 25 174 82
'ZNF701 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3571.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF701 MUTATED 2 2 3 0 1
ZNF701 WILD-TYPE 67 56 109 1 48
'ZNF701 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.17

Table S3572.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF701 MUTATED 3 2 2
ZNF701 WILD-TYPE 15 96 93

Figure S918.  Get High-res Image Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF701 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.95

Table S3573.  Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF701 MUTATED 1 1 3 2 0
ZNF701 WILD-TYPE 16 33 87 67 1
'OR2J3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S3574.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OR2J3 MUTATED 1 0 5
OR2J3 WILD-TYPE 79 55 147
'OR2J3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S3575.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OR2J3 MUTATED 5 0 0
OR2J3 WILD-TYPE 116 37 86
'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 0.86

Table S3576.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OR2J3 MUTATED 5 0 1
OR2J3 WILD-TYPE 159 13 79
'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3577.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OR2J3 MUTATED 1 3 0 2
OR2J3 WILD-TYPE 48 99 4 100
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S3578.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OR2J3 MUTATED 1 4 1
OR2J3 WILD-TYPE 25 175 83
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.49

Table S3579.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OR2J3 MUTATED 1 3 1 0 1
OR2J3 WILD-TYPE 68 55 111 1 48
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S3580.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OR2J3 MUTATED 0 4 1
OR2J3 WILD-TYPE 18 94 94
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.45

Table S3581.  Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OR2J3 MUTATED 1 1 3 0 0
OR2J3 WILD-TYPE 16 33 87 69 1
'MPRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.024

Table S3582.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MPRIP MUTATED 0 0 14
MPRIP WILD-TYPE 80 55 138

Figure S919.  Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MPRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S3583.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MPRIP MUTATED 8 0 2
MPRIP WILD-TYPE 113 37 84
'MPRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.84

Table S3584.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MPRIP MUTATED 9 0 2
MPRIP WILD-TYPE 155 13 78
'MPRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S3585.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MPRIP MUTATED 1 8 0 2
MPRIP WILD-TYPE 48 94 4 100
'MPRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S3586.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MPRIP MUTATED 0 12 2
MPRIP WILD-TYPE 26 167 82
'MPRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S3587.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MPRIP MUTATED 2 8 4 0 0
MPRIP WILD-TYPE 67 50 108 1 49

Figure S920.  Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3588.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MPRIP MUTATED 0 8 2
MPRIP WILD-TYPE 18 90 93
'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.35

Table S3589.  Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MPRIP MUTATED 0 4 5 1 0
MPRIP WILD-TYPE 17 30 85 68 1
'SYNJ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 0.067

Table S3590.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SYNJ2 MUTATED 0 2 14
SYNJ2 WILD-TYPE 80 53 138

Figure S921.  Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYNJ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.36

Table S3591.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SYNJ2 MUTATED 10 1 2
SYNJ2 WILD-TYPE 111 36 84
'SYNJ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.75

Table S3592.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SYNJ2 MUTATED 11 0 3
SYNJ2 WILD-TYPE 153 13 77
'SYNJ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.25

Table S3593.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SYNJ2 MUTATED 0 10 0 4
SYNJ2 WILD-TYPE 49 92 4 98
'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S3594.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SYNJ2 MUTATED 0 14 2
SYNJ2 WILD-TYPE 26 165 82
'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.1

Table S3595.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SYNJ2 MUTATED 1 8 7 0 0
SYNJ2 WILD-TYPE 68 50 105 1 49

Figure S922.  Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.19

Table S3596.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SYNJ2 MUTATED 0 10 2
SYNJ2 WILD-TYPE 18 88 93

Figure S923.  Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.49

Table S3597.  Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SYNJ2 MUTATED 0 4 6 2 0
SYNJ2 WILD-TYPE 17 30 84 67 1
'KIAA1324L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.32

Table S3598.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1324L MUTATED 2 5 14
KIAA1324L WILD-TYPE 78 50 138
'KIAA1324L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.18

Table S3599.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1324L MUTATED 13 1 2
KIAA1324L WILD-TYPE 108 36 84

Figure S924.  Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1324L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.29

Table S3600.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1324L MUTATED 16 0 2
KIAA1324L WILD-TYPE 148 13 78
'KIAA1324L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.042

Table S3601.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1324L MUTATED 1 15 0 2
KIAA1324L WILD-TYPE 48 87 4 100

Figure S925.  Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00989 (Fisher's exact test), Q value = 0.1

Table S3602.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1324L MUTATED 1 19 1
KIAA1324L WILD-TYPE 25 160 83

Figure S926.  Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.013

Table S3603.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1324L MUTATED 3 13 4 0 1
KIAA1324L WILD-TYPE 66 45 108 1 48

Figure S927.  Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.17

Table S3604.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1324L MUTATED 2 10 2
KIAA1324L WILD-TYPE 16 88 93

Figure S928.  Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.057

Table S3605.  Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1324L MUTATED 0 8 3 3 0
KIAA1324L WILD-TYPE 17 26 87 66 1

Figure S929.  Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S3606.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPR141 MUTATED 0 2 7
GPR141 WILD-TYPE 80 53 145
'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S3607.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPR141 MUTATED 6 0 2
GPR141 WILD-TYPE 115 37 84
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S3608.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPR141 MUTATED 5 1 2
GPR141 WILD-TYPE 159 12 78
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3609.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPR141 MUTATED 1 4 0 3
GPR141 WILD-TYPE 48 98 4 99
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S3610.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPR141 MUTATED 0 8 1
GPR141 WILD-TYPE 26 171 83
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S3611.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPR141 MUTATED 0 4 4 0 1
GPR141 WILD-TYPE 69 54 108 1 48
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3612.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPR141 MUTATED 0 4 3
GPR141 WILD-TYPE 18 94 92
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.45

Table S3613.  Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPR141 MUTATED 0 0 6 1 0
GPR141 WILD-TYPE 17 34 84 68 1
'TLR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.28

Table S3614.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TLR4 MUTATED 10 4 7
TLR4 WILD-TYPE 70 51 145
'TLR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.49

Table S3615.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TLR4 MUTATED 11 3 3
TLR4 WILD-TYPE 110 34 83
'TLR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S3616.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TLR4 MUTATED 13 2 4
TLR4 WILD-TYPE 151 11 76
'TLR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.26

Table S3617.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TLR4 MUTATED 8 7 0 4
TLR4 WILD-TYPE 41 95 4 98
'TLR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S3618.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TLR4 MUTATED 3 15 3
TLR4 WILD-TYPE 23 164 81
'TLR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 0.28

Table S3619.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TLR4 MUTATED 9 6 5 0 1
TLR4 WILD-TYPE 60 52 107 1 48
'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S3620.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TLR4 MUTATED 2 9 6
TLR4 WILD-TYPE 16 89 89
'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S3621.  Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TLR4 MUTATED 3 2 7 5 0
TLR4 WILD-TYPE 14 32 83 64 1
'LYSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S3622.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LYSMD3 MUTATED 1 1 8
LYSMD3 WILD-TYPE 79 54 144
'LYSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.64

Table S3623.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LYSMD3 MUTATED 6 0 3
LYSMD3 WILD-TYPE 115 37 83
'LYSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3624.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LYSMD3 MUTATED 7 0 3
LYSMD3 WILD-TYPE 157 13 77
'LYSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S3625.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LYSMD3 MUTATED 0 7 0 3
LYSMD3 WILD-TYPE 49 95 4 99
'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S3626.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LYSMD3 MUTATED 0 8 2
LYSMD3 WILD-TYPE 26 171 82
'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 0.27

Table S3627.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LYSMD3 MUTATED 0 1 8 0 1
LYSMD3 WILD-TYPE 69 57 104 1 48
'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3628.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LYSMD3 MUTATED 1 5 2
LYSMD3 WILD-TYPE 17 93 93
'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S3629.  Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LYSMD3 MUTATED 0 2 4 2 0
LYSMD3 WILD-TYPE 17 32 86 67 1
'LIAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S3630.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LIAS MUTATED 0 0 5
LIAS WILD-TYPE 80 55 147
'LIAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S3631.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LIAS MUTATED 5 0 0
LIAS WILD-TYPE 116 37 86
'LIAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.55

Table S3632.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LIAS MUTATED 5 0 0
LIAS WILD-TYPE 159 13 80
'LIAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.24

Table S3633.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LIAS MUTATED 0 5 0 0
LIAS WILD-TYPE 49 97 4 102
'LIAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S3634.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LIAS MUTATED 0 5 0
LIAS WILD-TYPE 26 174 84
'LIAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S3635.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LIAS MUTATED 0 4 1 0 0
LIAS WILD-TYPE 69 54 111 1 49

Figure S930.  Get High-res Image Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LIAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S3636.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LIAS MUTATED 0 4 0
LIAS WILD-TYPE 18 94 95
'LIAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S3637.  Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LIAS MUTATED 0 2 2 0 0
LIAS WILD-TYPE 17 32 88 69 1
'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.046

Table S3638.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAP7D3 MUTATED 1 0 15
MAP7D3 WILD-TYPE 79 55 137

Figure S931.  Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.28

Table S3639.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAP7D3 MUTATED 9 2 1
MAP7D3 WILD-TYPE 112 35 85
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S3640.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAP7D3 MUTATED 11 1 3
MAP7D3 WILD-TYPE 153 12 77
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.4

Table S3641.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAP7D3 MUTATED 2 10 0 3
MAP7D3 WILD-TYPE 47 92 4 99
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00709 (Fisher's exact test), Q value = 0.084

Table S3642.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAP7D3 MUTATED 1 15 0
MAP7D3 WILD-TYPE 25 164 84

Figure S932.  Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.032

Table S3643.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAP7D3 MUTATED 1 7 7 1 0
MAP7D3 WILD-TYPE 68 51 105 0 49

Figure S933.  Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 0.062

Table S3644.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAP7D3 MUTATED 2 8 0
MAP7D3 WILD-TYPE 16 90 95

Figure S934.  Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.021

Table S3645.  Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAP7D3 MUTATED 0 5 4 0 1
MAP7D3 WILD-TYPE 17 29 86 69 0

Figure S935.  Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S3646.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ERN2 MUTATED 1 1 9
ERN2 WILD-TYPE 79 54 143
'ERN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S3647.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ERN2 MUTATED 6 0 2
ERN2 WILD-TYPE 115 37 84
'ERN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3648.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ERN2 MUTATED 6 0 3
ERN2 WILD-TYPE 158 13 77
'ERN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S3649.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ERN2 MUTATED 0 5 0 4
ERN2 WILD-TYPE 49 97 4 98
'ERN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S3650.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ERN2 MUTATED 0 9 2
ERN2 WILD-TYPE 26 170 82
'ERN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.46

Table S3651.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ERN2 MUTATED 1 5 4 0 1
ERN2 WILD-TYPE 68 53 108 1 48
'ERN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S3652.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ERN2 MUTATED 0 6 2
ERN2 WILD-TYPE 18 92 93
'ERN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S3653.  Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ERN2 MUTATED 0 2 5 1 0
ERN2 WILD-TYPE 17 32 85 68 1
'DSTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S3654.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DSTN MUTATED 0 0 4
DSTN WILD-TYPE 80 55 148
'DSTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S3655.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DSTN MUTATED 3 0 1
DSTN WILD-TYPE 118 37 85
'DSTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3656.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DSTN MUTATED 2 0 1
DSTN WILD-TYPE 162 13 79
'DSTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3657.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DSTN MUTATED 0 2 0 1
DSTN WILD-TYPE 49 100 4 101
'DSTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S3658.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DSTN MUTATED 0 5 0
DSTN WILD-TYPE 26 174 84
'DSTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S3659.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DSTN MUTATED 0 3 2 0 0
DSTN WILD-TYPE 69 55 110 1 49
'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S3660.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DSTN MUTATED 0 4 0
DSTN WILD-TYPE 18 94 95
'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S3661.  Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DSTN MUTATED 0 2 2 0 0
DSTN WILD-TYPE 17 32 88 69 1
'PTPDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.82

Table S3662.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PTPDC1 MUTATED 1 2 5
PTPDC1 WILD-TYPE 79 53 147
'PTPDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S3663.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PTPDC1 MUTATED 2 2 3
PTPDC1 WILD-TYPE 119 35 83
'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3664.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PTPDC1 MUTATED 6 0 2
PTPDC1 WILD-TYPE 158 13 78
'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S3665.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PTPDC1 MUTATED 0 6 0 2
PTPDC1 WILD-TYPE 49 96 4 100
'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3666.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PTPDC1 MUTATED 1 6 1
PTPDC1 WILD-TYPE 25 173 83
'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S3667.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PTPDC1 MUTATED 1 4 2 0 1
PTPDC1 WILD-TYPE 68 54 110 1 48
'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S3668.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PTPDC1 MUTATED 0 5 1
PTPDC1 WILD-TYPE 18 93 94
'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S3669.  Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PTPDC1 MUTATED 0 3 2 1 0
PTPDC1 WILD-TYPE 17 31 88 68 1
'FYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S3670.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FYB MUTATED 1 1 9
FYB WILD-TYPE 79 54 143
'FYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.17

Table S3671.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FYB MUTATED 8 1 0
FYB WILD-TYPE 113 36 86

Figure S936.  Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S3672.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FYB MUTATED 10 0 1
FYB WILD-TYPE 154 13 79
'FYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.19

Table S3673.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FYB MUTATED 1 9 0 1
FYB WILD-TYPE 48 93 4 101

Figure S937.  Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S3674.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FYB MUTATED 0 11 0
FYB WILD-TYPE 26 168 84

Figure S938.  Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.23

Table S3675.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FYB MUTATED 1 6 4 0 0
FYB WILD-TYPE 68 52 108 1 49
'FYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S3676.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FYB MUTATED 1 7 0
FYB WILD-TYPE 17 91 95

Figure S939.  Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.3

Table S3677.  Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FYB MUTATED 0 3 5 0 0
FYB WILD-TYPE 17 31 85 69 1
'NDST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.41

Table S3678.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NDST2 MUTATED 1 0 7
NDST2 WILD-TYPE 79 55 145
'NDST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.63

Table S3679.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NDST2 MUTATED 4 0 1
NDST2 WILD-TYPE 117 37 85
'NDST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S3680.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NDST2 MUTATED 7 0 1
NDST2 WILD-TYPE 157 13 79
'NDST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S3681.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NDST2 MUTATED 0 5 0 3
NDST2 WILD-TYPE 49 97 4 99
'NDST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S3682.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NDST2 MUTATED 1 7 0
NDST2 WILD-TYPE 25 172 84
'NDST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S3683.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NDST2 MUTATED 1 4 3 0 0
NDST2 WILD-TYPE 68 54 109 1 49
'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.91

Table S3684.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NDST2 MUTATED 0 4 2
NDST2 WILD-TYPE 18 94 93
'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S3685.  Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NDST2 MUTATED 0 2 4 0 0
NDST2 WILD-TYPE 17 32 86 69 1
'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.23

Table S3686.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TAF7L MUTATED 0 0 7
TAF7L WILD-TYPE 80 55 145
'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S3687.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TAF7L MUTATED 4 0 3
TAF7L WILD-TYPE 117 37 83
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3688.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TAF7L MUTATED 5 0 2
TAF7L WILD-TYPE 159 13 78
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S3689.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TAF7L MUTATED 0 3 0 4
TAF7L WILD-TYPE 49 99 4 98
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S3690.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TAF7L MUTATED 0 7 0
TAF7L WILD-TYPE 26 172 84
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S3691.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TAF7L MUTATED 0 2 5 0 0
TAF7L WILD-TYPE 69 56 107 1 49
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3692.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TAF7L MUTATED 0 3 2
TAF7L WILD-TYPE 18 95 93
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S3693.  Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TAF7L MUTATED 0 0 4 1 0
TAF7L WILD-TYPE 17 34 86 68 1
'SAP130 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00524 (Fisher's exact test), Q value = 0.071

Table S3694.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SAP130 MUTATED 0 0 11
SAP130 WILD-TYPE 80 55 141

Figure S940.  Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SAP130 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.12

Table S3695.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SAP130 MUTATED 8 0 0
SAP130 WILD-TYPE 113 37 86

Figure S941.  Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SAP130 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S3696.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SAP130 MUTATED 10 0 1
SAP130 WILD-TYPE 154 13 79
'SAP130 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.19

Table S3697.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SAP130 MUTATED 0 9 0 2
SAP130 WILD-TYPE 49 93 4 100

Figure S942.  Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S3698.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SAP130 MUTATED 0 11 0
SAP130 WILD-TYPE 26 168 84

Figure S943.  Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.18

Table S3699.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SAP130 MUTATED 0 5 6 0 0
SAP130 WILD-TYPE 69 53 106 1 49

Figure S944.  Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S3700.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SAP130 MUTATED 0 5 1
SAP130 WILD-TYPE 18 93 94
'SAP130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S3701.  Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SAP130 MUTATED 0 2 4 0 0
SAP130 WILD-TYPE 17 32 86 69 1
'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.2

Table S3702.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SMARCB1 MUTATED 1 0 10
SMARCB1 WILD-TYPE 79 55 142

Figure S945.  Get High-res Image Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S3703.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SMARCB1 MUTATED 7 0 1
SMARCB1 WILD-TYPE 114 37 85
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3704.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SMARCB1 MUTATED 6 0 2
SMARCB1 WILD-TYPE 158 13 78
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S3705.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SMARCB1 MUTATED 0 6 0 2
SMARCB1 WILD-TYPE 49 96 4 100
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.83

Table S3706.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SMARCB1 MUTATED 1 8 2
SMARCB1 WILD-TYPE 25 171 82
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S3707.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SMARCB1 MUTATED 1 5 3 0 2
SMARCB1 WILD-TYPE 68 53 109 1 47
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.91

Table S3708.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SMARCB1 MUTATED 0 4 2
SMARCB1 WILD-TYPE 18 94 93
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S3709.  Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SMARCB1 MUTATED 0 2 2 2 0
SMARCB1 WILD-TYPE 17 32 88 67 1
'EPHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S3710.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EPHA5 MUTATED 6 3 16
EPHA5 WILD-TYPE 74 52 136
'EPHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.25

Table S3711.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EPHA5 MUTATED 15 3 3
EPHA5 WILD-TYPE 106 34 83
'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.17

Table S3712.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EPHA5 MUTATED 19 0 2
EPHA5 WILD-TYPE 145 13 78

Figure S946.  Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00755 (Fisher's exact test), Q value = 0.086

Table S3713.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EPHA5 MUTATED 2 16 0 3
EPHA5 WILD-TYPE 47 86 4 99

Figure S947.  Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.034

Table S3714.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EPHA5 MUTATED 1 24 1
EPHA5 WILD-TYPE 25 155 83

Figure S948.  Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.19

Table S3715.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EPHA5 MUTATED 6 9 11 0 0
EPHA5 WILD-TYPE 63 49 101 1 49

Figure S949.  Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.013

Table S3716.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EPHA5 MUTATED 1 16 1
EPHA5 WILD-TYPE 17 82 94

Figure S950.  Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S3717.  Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EPHA5 MUTATED 0 3 14 1 0
EPHA5 WILD-TYPE 17 31 76 68 1

Figure S951.  Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S3718.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WAPAL MUTATED 0 2 11
WAPAL WILD-TYPE 80 53 141

Figure S952.  Get High-res Image Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WAPAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.46

Table S3719.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WAPAL MUTATED 8 0 3
WAPAL WILD-TYPE 113 37 83
'WAPAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3720.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WAPAL MUTATED 9 0 4
WAPAL WILD-TYPE 155 13 76
'WAPAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S3721.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WAPAL MUTATED 0 8 0 5
WAPAL WILD-TYPE 49 94 4 97
'WAPAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S3722.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WAPAL MUTATED 0 11 2
WAPAL WILD-TYPE 26 168 82
'WAPAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S3723.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WAPAL MUTATED 0 7 4 0 2
WAPAL WILD-TYPE 69 51 108 1 47

Figure S953.  Get High-res Image Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S3724.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WAPAL MUTATED 0 8 2
WAPAL WILD-TYPE 18 90 93
'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.79

Table S3725.  Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WAPAL MUTATED 0 2 6 2 0
WAPAL WILD-TYPE 17 32 84 67 1
'CEP120 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S3726.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CEP120 MUTATED 0 0 10
CEP120 WILD-TYPE 80 55 142

Figure S954.  Get High-res Image Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S3727.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CEP120 MUTATED 6 0 2
CEP120 WILD-TYPE 115 37 84
'CEP120 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3728.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CEP120 MUTATED 6 0 2
CEP120 WILD-TYPE 158 13 78
'CEP120 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S3729.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CEP120 MUTATED 0 6 0 2
CEP120 WILD-TYPE 49 96 4 100
'CEP120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S3730.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CEP120 MUTATED 0 9 1
CEP120 WILD-TYPE 26 170 83
'CEP120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.35

Table S3731.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CEP120 MUTATED 0 4 5 0 1
CEP120 WILD-TYPE 69 54 107 1 48
'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3732.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CEP120 MUTATED 1 6 1
CEP120 WILD-TYPE 17 92 94
'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S3733.  Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CEP120 MUTATED 0 2 5 1 0
CEP120 WILD-TYPE 17 32 85 68 1
'RDX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S3734.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RDX MUTATED 2 0 5
RDX WILD-TYPE 78 55 147
'RDX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S3735.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RDX MUTATED 4 1 0
RDX WILD-TYPE 117 36 86
'RDX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S3736.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RDX MUTATED 4 1 0
RDX WILD-TYPE 160 12 80
'RDX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S3737.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RDX MUTATED 1 3 0 1
RDX WILD-TYPE 48 99 4 101
'RDX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.41

Table S3738.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RDX MUTATED 1 6 0
RDX WILD-TYPE 25 173 84
'RDX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.56

Table S3739.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RDX MUTATED 2 3 2 0 0
RDX WILD-TYPE 67 55 110 1 49
'RDX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.73

Table S3740.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RDX MUTATED 1 2 2
RDX WILD-TYPE 17 96 93
'RDX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.45

Table S3741.  Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RDX MUTATED 1 1 3 0 0
RDX WILD-TYPE 16 33 87 69 1
'SPATA5L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S3742.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SPATA5L1 MUTATED 1 0 6
SPATA5L1 WILD-TYPE 79 55 146
'SPATA5L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.17

Table S3743.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SPATA5L1 MUTATED 7 0 0
SPATA5L1 WILD-TYPE 114 37 86

Figure S955.  Get High-res Image Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.55

Table S3744.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SPATA5L1 MUTATED 5 0 0
SPATA5L1 WILD-TYPE 159 13 80
'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.94

Table S3745.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SPATA5L1 MUTATED 0 3 0 2
SPATA5L1 WILD-TYPE 49 99 4 100
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S3746.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SPATA5L1 MUTATED 1 4 2
SPATA5L1 WILD-TYPE 25 175 82
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S3747.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SPATA5L1 MUTATED 0 2 4 0 1
SPATA5L1 WILD-TYPE 69 56 108 1 48
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S3748.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SPATA5L1 MUTATED 1 2 3
SPATA5L1 WILD-TYPE 17 96 92
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.9

Table S3749.  Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SPATA5L1 MUTATED 0 0 4 2 0
SPATA5L1 WILD-TYPE 17 34 86 67 1
'TACC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.17

Table S3750.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TACC2 MUTATED 5 2 22
TACC2 WILD-TYPE 75 53 130

Figure S956.  Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TACC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S3751.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TACC2 MUTATED 12 4 5
TACC2 WILD-TYPE 109 33 81
'TACC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S3752.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TACC2 MUTATED 19 1 5
TACC2 WILD-TYPE 145 12 75
'TACC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S3753.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TACC2 MUTATED 4 15 0 6
TACC2 WILD-TYPE 45 87 4 96
'TACC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S3754.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TACC2 MUTATED 2 23 5
TACC2 WILD-TYPE 24 156 79
'TACC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.19

Table S3755.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TACC2 MUTATED 5 13 9 0 3
TACC2 WILD-TYPE 64 45 103 1 46

Figure S957.  Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S3756.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TACC2 MUTATED 1 15 4
TACC2 WILD-TYPE 17 83 91

Figure S958.  Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S3757.  Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TACC2 MUTATED 0 7 9 4 0
TACC2 WILD-TYPE 17 27 81 65 1
'CD58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S3758.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CD58 MUTATED 0 0 6
CD58 WILD-TYPE 80 55 146
'CD58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S3759.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CD58 MUTATED 4 0 1
CD58 WILD-TYPE 117 37 85
'CD58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.86

Table S3760.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CD58 MUTATED 5 0 1
CD58 WILD-TYPE 159 13 79
'CD58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S3761.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CD58 MUTATED 0 4 0 2
CD58 WILD-TYPE 49 98 4 100
'CD58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S3762.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CD58 MUTATED 0 6 0
CD58 WILD-TYPE 26 173 84
'CD58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S3763.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CD58 MUTATED 0 2 4 0 0
CD58 WILD-TYPE 69 56 108 1 49
'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S3764.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CD58 MUTATED 0 5 0
CD58 WILD-TYPE 18 93 95
'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S3765.  Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CD58 MUTATED 0 1 4 0 0
CD58 WILD-TYPE 17 33 86 69 1
'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.18

Table S3766.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KCTD9 MUTATED 0 1 9
KCTD9 WILD-TYPE 80 54 143

Figure S959.  Get High-res Image Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S3767.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KCTD9 MUTATED 4 1 1
KCTD9 WILD-TYPE 117 36 85
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.51

Table S3768.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KCTD9 MUTATED 4 0 5
KCTD9 WILD-TYPE 160 13 75
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S3769.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KCTD9 MUTATED 0 4 0 5
KCTD9 WILD-TYPE 49 98 4 97
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S3770.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KCTD9 MUTATED 0 8 2
KCTD9 WILD-TYPE 26 171 82
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S3771.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KCTD9 MUTATED 0 3 6 0 1
KCTD9 WILD-TYPE 69 55 106 1 48
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.2

Table S3772.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KCTD9 MUTATED 0 6 0
KCTD9 WILD-TYPE 18 92 95

Figure S960.  Get High-res Image Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.42

Table S3773.  Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KCTD9 MUTATED 0 2 4 0 0
KCTD9 WILD-TYPE 17 32 86 69 1
'KIAA1539 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S3774.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1539 MUTATED 0 1 5
KIAA1539 WILD-TYPE 80 54 147
'KIAA1539 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.23

Table S3775.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1539 MUTATED 6 0 0
KIAA1539 WILD-TYPE 115 37 86
'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S3776.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1539 MUTATED 5 0 0
KIAA1539 WILD-TYPE 159 13 80
'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S3777.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1539 MUTATED 0 4 0 1
KIAA1539 WILD-TYPE 49 98 4 101
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S3778.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1539 MUTATED 0 6 0
KIAA1539 WILD-TYPE 26 173 84
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S3779.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1539 MUTATED 0 5 1 0 0
KIAA1539 WILD-TYPE 69 53 111 1 49

Figure S961.  Get High-res Image Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.2

Table S3780.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1539 MUTATED 0 6 0
KIAA1539 WILD-TYPE 18 92 95

Figure S962.  Get High-res Image Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S3781.  Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1539 MUTATED 0 3 3 0 0
KIAA1539 WILD-TYPE 17 31 87 69 1
'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S3782.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZFP36L2 MUTATED 1 1 6
ZFP36L2 WILD-TYPE 79 54 146
'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.12

Table S3783.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZFP36L2 MUTATED 8 0 0
ZFP36L2 WILD-TYPE 113 37 86

Figure S963.  Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3784.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZFP36L2 MUTATED 7 0 1
ZFP36L2 WILD-TYPE 157 13 79
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S3785.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZFP36L2 MUTATED 1 6 0 1
ZFP36L2 WILD-TYPE 48 96 4 101
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3786.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZFP36L2 MUTATED 0 7 1
ZFP36L2 WILD-TYPE 26 172 83
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0064 (Fisher's exact test), Q value = 0.079

Table S3787.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZFP36L2 MUTATED 0 6 1 0 1
ZFP36L2 WILD-TYPE 69 52 111 1 48

Figure S964.  Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.2

Table S3788.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZFP36L2 MUTATED 0 6 0
ZFP36L2 WILD-TYPE 18 92 95

Figure S965.  Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.18

Table S3789.  Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZFP36L2 MUTATED 0 4 2 0 0
ZFP36L2 WILD-TYPE 17 30 88 69 1

Figure S966.  Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.26

Table S3790.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TNS4 MUTATED 2 0 10
TNS4 WILD-TYPE 78 55 142
'TNS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S3791.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TNS4 MUTATED 5 2 2
TNS4 WILD-TYPE 116 35 84
'TNS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S3792.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TNS4 MUTATED 9 1 2
TNS4 WILD-TYPE 155 12 78
'TNS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S3793.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TNS4 MUTATED 2 7 0 3
TNS4 WILD-TYPE 47 95 4 99
'TNS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S3794.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TNS4 MUTATED 1 10 1
TNS4 WILD-TYPE 25 169 83
'TNS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.89

Table S3795.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TNS4 MUTATED 2 3 6 0 1
TNS4 WILD-TYPE 67 55 106 1 48
'TNS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.21

Table S3796.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TNS4 MUTATED 0 8 1
TNS4 WILD-TYPE 18 90 94

Figure S967.  Get High-res Image Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TNS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.64

Table S3797.  Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TNS4 MUTATED 1 2 5 1 0
TNS4 WILD-TYPE 16 32 85 68 1
'ZBTB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 0.95

Table S3798.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZBTB49 MUTATED 1 1 5
ZBTB49 WILD-TYPE 79 54 147
'ZBTB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3799.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZBTB49 MUTATED 4 1 2
ZBTB49 WILD-TYPE 117 36 84
'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S3800.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZBTB49 MUTATED 6 0 1
ZBTB49 WILD-TYPE 158 13 79
'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S3801.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZBTB49 MUTATED 0 6 0 1
ZBTB49 WILD-TYPE 49 96 4 101
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3802.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZBTB49 MUTATED 0 5 2
ZBTB49 WILD-TYPE 26 174 82
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.28

Table S3803.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZBTB49 MUTATED 2 4 1 0 0
ZBTB49 WILD-TYPE 67 54 111 1 49
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S3804.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZBTB49 MUTATED 0 5 2
ZBTB49 WILD-TYPE 18 93 93
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S3805.  Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZBTB49 MUTATED 0 3 2 2 0
ZBTB49 WILD-TYPE 17 31 88 67 1
'CAMTA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.011

Table S3806.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CAMTA2 MUTATED 0 0 16
CAMTA2 WILD-TYPE 80 55 136

Figure S968.  Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CAMTA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.23

Table S3807.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CAMTA2 MUTATED 12 1 2
CAMTA2 WILD-TYPE 109 36 84
'CAMTA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S3808.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CAMTA2 MUTATED 12 0 2
CAMTA2 WILD-TYPE 152 13 78
'CAMTA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.25

Table S3809.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CAMTA2 MUTATED 0 10 0 4
CAMTA2 WILD-TYPE 49 92 4 98
'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S3810.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CAMTA2 MUTATED 0 14 2
CAMTA2 WILD-TYPE 26 165 82
'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S3811.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CAMTA2 MUTATED 1 7 8 0 0
CAMTA2 WILD-TYPE 68 51 104 1 49

Figure S969.  Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0061 (Fisher's exact test), Q value = 0.077

Table S3812.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CAMTA2 MUTATED 0 13 2
CAMTA2 WILD-TYPE 18 85 93

Figure S970.  Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.2

Table S3813.  Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CAMTA2 MUTATED 0 5 9 1 0
CAMTA2 WILD-TYPE 17 29 81 68 1

Figure S971.  Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRT24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.64

Table S3814.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KRT24 MUTATED 1 2 2
KRT24 WILD-TYPE 79 53 150
'KRT24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S3815.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KRT24 MUTATED 4 0 1
KRT24 WILD-TYPE 117 37 85
'KRT24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S3816.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KRT24 MUTATED 4 0 0
KRT24 WILD-TYPE 160 13 80
'KRT24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S3817.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KRT24 MUTATED 0 4 0 0
KRT24 WILD-TYPE 49 98 4 102
'KRT24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S3818.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KRT24 MUTATED 0 5 0
KRT24 WILD-TYPE 26 174 84
'KRT24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.79

Table S3819.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KRT24 MUTATED 1 2 2 0 0
KRT24 WILD-TYPE 68 56 110 1 49
'KRT24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S3820.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KRT24 MUTATED 0 3 1
KRT24 WILD-TYPE 18 95 94
'KRT24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S3821.  Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KRT24 MUTATED 1 1 2 0 0
KRT24 WILD-TYPE 16 33 88 69 1
'EEF2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S3822.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EEF2K MUTATED 1 1 6
EEF2K WILD-TYPE 79 54 146
'EEF2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 0.93

Table S3823.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EEF2K MUTATED 2 1 2
EEF2K WILD-TYPE 119 36 84
'EEF2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3824.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EEF2K MUTATED 6 0 2
EEF2K WILD-TYPE 158 13 78
'EEF2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.75

Table S3825.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EEF2K MUTATED 1 5 0 2
EEF2K WILD-TYPE 48 97 4 100
'EEF2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.27

Table S3826.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EEF2K MUTATED 0 9 0
EEF2K WILD-TYPE 26 170 84
'EEF2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S3827.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EEF2K MUTATED 1 4 3 0 1
EEF2K WILD-TYPE 68 54 109 1 48
'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.49

Table S3828.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EEF2K MUTATED 1 3 1
EEF2K WILD-TYPE 17 95 94
'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.36

Table S3829.  Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EEF2K MUTATED 1 2 2 0 0
EEF2K WILD-TYPE 16 32 88 69 1
'RERE MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0072

Table S3830.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RERE MUTATED 0 1 20
RERE WILD-TYPE 80 54 132

Figure S972.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RERE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00475 (Fisher's exact test), Q value = 0.067

Table S3831.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RERE MUTATED 13 0 1
RERE WILD-TYPE 108 37 85

Figure S973.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RERE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00998 (Fisher's exact test), Q value = 0.1

Table S3832.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RERE MUTATED 19 1 1
RERE WILD-TYPE 145 12 79

Figure S974.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RERE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0093

Table S3833.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RERE MUTATED 0 18 0 3
RERE WILD-TYPE 49 84 4 99

Figure S975.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.013

Table S3834.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RERE MUTATED 0 21 0
RERE WILD-TYPE 26 158 84

Figure S976.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RERE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S3835.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RERE MUTATED 1 15 5 0 0
RERE WILD-TYPE 68 43 107 1 49

Figure S977.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.15

Table S3836.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RERE MUTATED 0 11 2
RERE WILD-TYPE 18 87 93

Figure S978.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00898 (Fisher's exact test), Q value = 0.095

Table S3837.  Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RERE MUTATED 0 5 8 0 0
RERE WILD-TYPE 17 29 82 69 1

Figure S979.  Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRAM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.5

Table S3838.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TRAM1L1 MUTATED 2 1 10
TRAM1L1 WILD-TYPE 78 54 142
'TRAM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00419 (Fisher's exact test), Q value = 0.062

Table S3839.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TRAM1L1 MUTATED 10 0 0
TRAM1L1 WILD-TYPE 111 37 86

Figure S980.  Get High-res Image Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.95

Table S3840.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TRAM1L1 MUTATED 9 0 3
TRAM1L1 WILD-TYPE 155 13 77
'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S3841.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TRAM1L1 MUTATED 2 7 0 3
TRAM1L1 WILD-TYPE 47 95 4 99
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S3842.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TRAM1L1 MUTATED 1 10 2
TRAM1L1 WILD-TYPE 25 169 82
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S3843.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TRAM1L1 MUTATED 1 5 6 0 1
TRAM1L1 WILD-TYPE 68 53 106 1 48
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3844.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TRAM1L1 MUTATED 0 8 2
TRAM1L1 WILD-TYPE 18 90 93
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.81

Table S3845.  Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TRAM1L1 MUTATED 1 1 6 2 0
TRAM1L1 WILD-TYPE 16 33 84 67 1
'EXOSC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S3846.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EXOSC8 MUTATED 0 1 4
EXOSC8 WILD-TYPE 80 54 148
'EXOSC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S3847.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EXOSC8 MUTATED 3 0 0
EXOSC8 WILD-TYPE 118 37 86
'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3848.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EXOSC8 MUTATED 4 0 1
EXOSC8 WILD-TYPE 160 13 79
'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S3849.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EXOSC8 MUTATED 0 4 0 1
EXOSC8 WILD-TYPE 49 98 4 101
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S3850.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EXOSC8 MUTATED 0 5 0
EXOSC8 WILD-TYPE 26 174 84
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S3851.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EXOSC8 MUTATED 0 2 3 0 0
EXOSC8 WILD-TYPE 69 56 109 1 49
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S3852.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EXOSC8 MUTATED 0 3 0
EXOSC8 WILD-TYPE 18 95 95
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S3853.  Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EXOSC8 MUTATED 0 0 3 0 0
EXOSC8 WILD-TYPE 17 34 87 69 1
'SUCLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S3854.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SUCLG2 MUTATED 0 0 5
SUCLG2 WILD-TYPE 80 55 147
'SUCLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S3855.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SUCLG2 MUTATED 3 0 1
SUCLG2 WILD-TYPE 118 37 85
'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S3856.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SUCLG2 MUTATED 3 1 0
SUCLG2 WILD-TYPE 161 12 80
'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.7

Table S3857.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SUCLG2 MUTATED 0 3 0 1
SUCLG2 WILD-TYPE 49 99 4 101
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S3858.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SUCLG2 MUTATED 0 5 0
SUCLG2 WILD-TYPE 26 174 84
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S3859.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SUCLG2 MUTATED 0 2 3 0 0
SUCLG2 WILD-TYPE 69 56 109 1 49
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S3860.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SUCLG2 MUTATED 0 4 0
SUCLG2 WILD-TYPE 18 94 95
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.21

Table S3861.  Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SUCLG2 MUTATED 0 3 1 0 0
SUCLG2 WILD-TYPE 17 31 89 69 1

Figure S981.  Get High-res Image Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CNOT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.23

Table S3862.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CNOT6 MUTATED 0 0 7
CNOT6 WILD-TYPE 80 55 145
'CNOT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3863.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CNOT6 MUTATED 3 0 2
CNOT6 WILD-TYPE 118 37 84
'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3864.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CNOT6 MUTATED 3 0 1
CNOT6 WILD-TYPE 161 13 79
'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3865.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CNOT6 MUTATED 0 2 0 2
CNOT6 WILD-TYPE 49 100 4 100
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3866.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CNOT6 MUTATED 0 5 2
CNOT6 WILD-TYPE 26 174 82
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.49

Table S3867.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CNOT6 MUTATED 0 3 3 0 1
CNOT6 WILD-TYPE 69 55 109 1 48
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S3868.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CNOT6 MUTATED 0 1 3
CNOT6 WILD-TYPE 18 97 92
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3869.  Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CNOT6 MUTATED 0 0 2 2 0
CNOT6 WILD-TYPE 17 34 88 67 1
'TIGD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S3870.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TIGD7 MUTATED 0 0 8
TIGD7 WILD-TYPE 80 55 144

Figure S982.  Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TIGD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S3871.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TIGD7 MUTATED 8 0 0
TIGD7 WILD-TYPE 113 37 86

Figure S983.  Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S3872.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TIGD7 MUTATED 8 0 0
TIGD7 WILD-TYPE 156 13 80
'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00661 (Fisher's exact test), Q value = 0.081

Table S3873.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TIGD7 MUTATED 0 8 0 0
TIGD7 WILD-TYPE 49 94 4 102

Figure S984.  Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.28

Table S3874.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TIGD7 MUTATED 0 8 0
TIGD7 WILD-TYPE 26 171 84
'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00792 (Fisher's exact test), Q value = 0.087

Table S3875.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TIGD7 MUTATED 0 6 2 0 0
TIGD7 WILD-TYPE 69 52 110 1 49

Figure S985.  Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3876.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TIGD7 MUTATED 1 6 1
TIGD7 WILD-TYPE 17 92 94
'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.29

Table S3877.  Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TIGD7 MUTATED 0 1 7 0 0
TIGD7 WILD-TYPE 17 33 83 69 1
'ITSN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.24

Table S3878.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ITSN2 MUTATED 1 2 13
ITSN2 WILD-TYPE 79 53 139
'ITSN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.28

Table S3879.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ITSN2 MUTATED 9 0 2
ITSN2 WILD-TYPE 112 37 84
'ITSN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.98

Table S3880.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ITSN2 MUTATED 11 0 4
ITSN2 WILD-TYPE 153 13 76
'ITSN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S3881.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ITSN2 MUTATED 1 9 0 5
ITSN2 WILD-TYPE 48 93 4 97
'ITSN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.051

Table S3882.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ITSN2 MUTATED 0 16 0
ITSN2 WILD-TYPE 26 163 84

Figure S986.  Get High-res Image Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00334 (Fisher's exact test), Q value = 0.056

Table S3883.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ITSN2 MUTATED 0 7 9 0 0
ITSN2 WILD-TYPE 69 51 103 1 49

Figure S987.  Get High-res Image Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S3884.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ITSN2 MUTATED 0 8 2
ITSN2 WILD-TYPE 18 90 93
'ITSN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.23

Table S3885.  Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ITSN2 MUTATED 0 2 8 0 0
ITSN2 WILD-TYPE 17 32 82 69 1
'OGFRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.4

Table S3886.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OGFRL1 MUTATED 2 0 8
OGFRL1 WILD-TYPE 78 55 144
'OGFRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S3887.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OGFRL1 MUTATED 5 1 0
OGFRL1 WILD-TYPE 116 36 86
'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S3888.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OGFRL1 MUTATED 9 0 1
OGFRL1 WILD-TYPE 155 13 79
'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.25

Table S3889.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OGFRL1 MUTATED 1 8 0 1
OGFRL1 WILD-TYPE 48 94 4 101
'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.28

Table S3890.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OGFRL1 MUTATED 1 9 0
OGFRL1 WILD-TYPE 25 170 84
'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.017

Table S3891.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OGFRL1 MUTATED 1 8 1 0 0
OGFRL1 WILD-TYPE 68 50 111 1 49

Figure S988.  Get High-res Image Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.91

Table S3892.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OGFRL1 MUTATED 0 4 2
OGFRL1 WILD-TYPE 18 94 93
'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S3893.  Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OGFRL1 MUTATED 1 2 3 0 0
OGFRL1 WILD-TYPE 16 32 87 69 1
'KIAA1462 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.81

Table S3894.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1462 MUTATED 5 3 14
KIAA1462 WILD-TYPE 75 52 138
'KIAA1462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S3895.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1462 MUTATED 10 4 3
KIAA1462 WILD-TYPE 111 33 83
'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S3896.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1462 MUTATED 13 1 3
KIAA1462 WILD-TYPE 151 12 77
'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S3897.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1462 MUTATED 3 11 0 3
KIAA1462 WILD-TYPE 46 91 4 99
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.6

Table S3898.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1462 MUTATED 3 15 4
KIAA1462 WILD-TYPE 23 164 80
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S3899.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1462 MUTATED 4 9 8 0 1
KIAA1462 WILD-TYPE 65 49 104 1 48
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.24

Table S3900.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1462 MUTATED 2 11 3
KIAA1462 WILD-TYPE 16 87 92
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 0.24

Table S3901.  Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1462 MUTATED 1 7 5 3 0
KIAA1462 WILD-TYPE 16 27 85 66 1
'MAP1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.26

Table S3902.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAP1A MUTATED 1 2 12
MAP1A WILD-TYPE 79 53 140
'MAP1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.26

Table S3903.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAP1A MUTATED 9 1 1
MAP1A WILD-TYPE 112 36 85
'MAP1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S3904.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAP1A MUTATED 12 0 2
MAP1A WILD-TYPE 152 13 78
'MAP1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.19

Table S3905.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAP1A MUTATED 1 11 0 2
MAP1A WILD-TYPE 48 91 4 100

Figure S989.  Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.19

Table S3906.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAP1A MUTATED 0 14 1
MAP1A WILD-TYPE 26 165 83

Figure S990.  Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.14

Table S3907.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAP1A MUTATED 3 8 4 0 0
MAP1A WILD-TYPE 66 50 108 1 49

Figure S991.  Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S3908.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAP1A MUTATED 0 10 1
MAP1A WILD-TYPE 18 88 94

Figure S992.  Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S3909.  Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAP1A MUTATED 0 2 8 1 0
MAP1A WILD-TYPE 17 32 82 68 1
'NOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.23

Table S3910.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NOB1 MUTATED 0 0 7
NOB1 WILD-TYPE 80 55 145
'NOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.91

Table S3911.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NOB1 MUTATED 3 0 1
NOB1 WILD-TYPE 118 37 85
'NOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S3912.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NOB1 MUTATED 6 0 1
NOB1 WILD-TYPE 158 13 79
'NOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S3913.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NOB1 MUTATED 0 5 0 2
NOB1 WILD-TYPE 49 97 4 100
'NOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S3914.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NOB1 MUTATED 0 7 0
NOB1 WILD-TYPE 26 172 84
'NOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S3915.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NOB1 MUTATED 1 3 3 0 0
NOB1 WILD-TYPE 68 55 109 1 49
'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S3916.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NOB1 MUTATED 0 3 1
NOB1 WILD-TYPE 18 95 94
'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S3917.  Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NOB1 MUTATED 0 1 3 0 0
NOB1 WILD-TYPE 17 33 87 69 1
'TNK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S3918.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TNK2 MUTATED 2 0 9
TNK2 WILD-TYPE 78 55 143
'TNK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.18

Table S3919.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TNK2 MUTATED 9 0 1
TNK2 WILD-TYPE 112 37 85

Figure S993.  Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S3920.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TNK2 MUTATED 9 0 1
TNK2 WILD-TYPE 155 13 79
'TNK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.25

Table S3921.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TNK2 MUTATED 1 8 0 1
TNK2 WILD-TYPE 48 94 4 101
'TNK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S3922.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TNK2 MUTATED 0 11 0
TNK2 WILD-TYPE 26 168 84

Figure S994.  Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S3923.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TNK2 MUTATED 1 3 7 0 0
TNK2 WILD-TYPE 68 55 105 1 49
'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.23

Table S3924.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TNK2 MUTATED 2 5 1
TNK2 WILD-TYPE 16 93 94
'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S3925.  Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TNK2 MUTATED 1 2 5 0 0
TNK2 WILD-TYPE 16 32 85 69 1
'CYP7B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3926.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CYP7B1 MUTATED 4 3 9
CYP7B1 WILD-TYPE 76 52 143
'CYP7B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S3927.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CYP7B1 MUTATED 7 0 6
CYP7B1 WILD-TYPE 114 37 80
'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.38

Table S3928.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CYP7B1 MUTATED 7 2 5
CYP7B1 WILD-TYPE 157 11 75
'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.74

Table S3929.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CYP7B1 MUTATED 4 4 0 6
CYP7B1 WILD-TYPE 45 98 4 96
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.64

Table S3930.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CYP7B1 MUTATED 2 8 6
CYP7B1 WILD-TYPE 24 171 78
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S3931.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CYP7B1 MUTATED 5 2 7 0 2
CYP7B1 WILD-TYPE 64 56 105 1 47
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S3932.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CYP7B1 MUTATED 2 5 6
CYP7B1 WILD-TYPE 16 93 89
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.57

Table S3933.  Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CYP7B1 MUTATED 1 0 6 6 0
CYP7B1 WILD-TYPE 16 34 84 63 1
'EDNRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S3934.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EDNRB MUTATED 3 6 16
EDNRB WILD-TYPE 77 49 136
'EDNRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S3935.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EDNRB MUTATED 13 2 1
EDNRB WILD-TYPE 108 35 85

Figure S995.  Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.22

Table S3936.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EDNRB MUTATED 18 1 2
EDNRB WILD-TYPE 146 12 78
'EDNRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.27

Table S3937.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EDNRB MUTATED 3 14 0 4
EDNRB WILD-TYPE 46 88 4 98
'EDNRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S3938.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EDNRB MUTATED 1 22 2
EDNRB WILD-TYPE 25 157 82

Figure S996.  Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00918 (Fisher's exact test), Q value = 0.096

Table S3939.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EDNRB MUTATED 4 12 8 0 1
EDNRB WILD-TYPE 65 46 104 1 48

Figure S997.  Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.26

Table S3940.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EDNRB MUTATED 1 11 3
EDNRB WILD-TYPE 17 87 92
'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S3941.  Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EDNRB MUTATED 0 3 10 2 0
EDNRB WILD-TYPE 17 31 80 67 1
'STAU2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.41

Table S3942.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STAU2 MUTATED 1 0 7
STAU2 WILD-TYPE 79 55 145
'STAU2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3943.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STAU2 MUTATED 2 0 1
STAU2 WILD-TYPE 119 37 85
'STAU2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3944.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STAU2 MUTATED 4 0 2
STAU2 WILD-TYPE 160 13 78
'STAU2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.56

Table S3945.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STAU2 MUTATED 2 3 0 1
STAU2 WILD-TYPE 47 99 4 101
'STAU2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3946.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STAU2 MUTATED 0 6 2
STAU2 WILD-TYPE 26 173 82
'STAU2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S3947.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STAU2 MUTATED 2 3 2 0 1
STAU2 WILD-TYPE 67 55 110 1 48
'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.82

Table S3948.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STAU2 MUTATED 0 1 2
STAU2 WILD-TYPE 18 97 93
'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S3949.  Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STAU2 MUTATED 1 0 1 1 0
STAU2 WILD-TYPE 16 34 89 68 1
'ARHGEF17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.046

Table S3950.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARHGEF17 MUTATED 1 0 15
ARHGEF17 WILD-TYPE 79 55 137

Figure S998.  Get High-res Image Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3951.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARHGEF17 MUTATED 11 1 3
ARHGEF17 WILD-TYPE 110 36 83
'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S3952.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARHGEF17 MUTATED 11 1 2
ARHGEF17 WILD-TYPE 153 12 78
'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S3953.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARHGEF17 MUTATED 1 9 0 4
ARHGEF17 WILD-TYPE 48 93 4 98
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S3954.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARHGEF17 MUTATED 2 13 2
ARHGEF17 WILD-TYPE 24 166 82
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00929 (Fisher's exact test), Q value = 0.097

Table S3955.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARHGEF17 MUTATED 1 7 6 1 2
ARHGEF17 WILD-TYPE 68 51 106 0 47

Figure S999.  Get High-res Image Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S3956.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ARHGEF17 MUTATED 1 10 3
ARHGEF17 WILD-TYPE 17 88 92
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S3957.  Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ARHGEF17 MUTATED 0 5 6 2 1
ARHGEF17 WILD-TYPE 17 29 84 67 0

Figure S1000.  Get High-res Image Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C10ORF120 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S3958.  Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C10ORF120 MUTATED 0 2 3
C10ORF120 WILD-TYPE 80 53 149
'C10ORF120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.57

Table S3959.  Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C10ORF120 MUTATED 3 0 0
C10ORF120 WILD-TYPE 118 37 86
'C10ORF120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S3960.  Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C10ORF120 MUTATED 0 5 0
C10ORF120 WILD-TYPE 26 174 84
'C10ORF120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.042

Table S3961.  Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C10ORF120 MUTATED 0 5 0 0 0
C10ORF120 WILD-TYPE 69 53 112 1 49

Figure S1001.  Get High-res Image Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S3962.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC45A4 MUTATED 1 1 15
SLC45A4 WILD-TYPE 79 54 137

Figure S1002.  Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC45A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S3963.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC45A4 MUTATED 13 0 2
SLC45A4 WILD-TYPE 108 37 84

Figure S1003.  Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S3964.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC45A4 MUTATED 13 1 3
SLC45A4 WILD-TYPE 151 12 77
'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.18

Table S3965.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC45A4 MUTATED 0 12 0 5
SLC45A4 WILD-TYPE 49 90 4 97

Figure S1004.  Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.18

Table S3966.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC45A4 MUTATED 1 16 1
SLC45A4 WILD-TYPE 25 163 83

Figure S1005.  Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00901 (Fisher's exact test), Q value = 0.095

Table S3967.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC45A4 MUTATED 1 8 9 0 0
SLC45A4 WILD-TYPE 68 50 103 1 49

Figure S1006.  Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.28

Table S3968.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC45A4 MUTATED 0 10 3
SLC45A4 WILD-TYPE 18 88 92
'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.32

Table S3969.  Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC45A4 MUTATED 0 3 9 1 0
SLC45A4 WILD-TYPE 17 31 81 68 1
'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.23

Table S3970.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CSNK1G3 MUTATED 0 0 7
CSNK1G3 WILD-TYPE 80 55 145
'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S3971.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CSNK1G3 MUTATED 5 0 1
CSNK1G3 WILD-TYPE 116 37 85
'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3972.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CSNK1G3 MUTATED 4 0 1
CSNK1G3 WILD-TYPE 160 13 79
'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S3973.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CSNK1G3 MUTATED 0 4 0 1
CSNK1G3 WILD-TYPE 49 98 4 101
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S3974.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CSNK1G3 MUTATED 0 6 1
CSNK1G3 WILD-TYPE 26 173 83
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S3975.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CSNK1G3 MUTATED 0 5 1 0 1
CSNK1G3 WILD-TYPE 69 53 111 1 48

Figure S1007.  Get High-res Image Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S3976.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CSNK1G3 MUTATED 0 5 1
CSNK1G3 WILD-TYPE 18 93 94
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S3977.  Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CSNK1G3 MUTATED 0 3 2 1 0
CSNK1G3 WILD-TYPE 17 31 88 68 1
'SLFN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S3978.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLFN12 MUTATED 1 0 6
SLFN12 WILD-TYPE 79 55 146
'SLFN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3979.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLFN12 MUTATED 6 0 1
SLFN12 WILD-TYPE 115 37 85
'SLFN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.85

Table S3980.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLFN12 MUTATED 3 0 2
SLFN12 WILD-TYPE 161 13 78
'SLFN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 0.94

Table S3981.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLFN12 MUTATED 0 2 0 3
SLFN12 WILD-TYPE 49 100 4 99
'SLFN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S3982.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLFN12 MUTATED 0 6 1
SLFN12 WILD-TYPE 26 173 83
'SLFN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S3983.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLFN12 MUTATED 1 4 1 0 1
SLFN12 WILD-TYPE 68 54 111 1 48
'SLFN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S3984.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLFN12 MUTATED 0 5 2
SLFN12 WILD-TYPE 18 93 93
'SLFN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S3985.  Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLFN12 MUTATED 0 2 4 1 0
SLFN12 WILD-TYPE 17 32 86 68 1
'ARFGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.013

Table S3986.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARFGEF1 MUTATED 1 1 22
ARFGEF1 WILD-TYPE 79 54 130

Figure S1008.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S3987.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARFGEF1 MUTATED 15 1 2
ARFGEF1 WILD-TYPE 106 36 84

Figure S1009.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S3988.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARFGEF1 MUTATED 19 1 3
ARFGEF1 WILD-TYPE 145 12 77
'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00169 (Fisher's exact test), Q value = 0.036

Table S3989.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARFGEF1 MUTATED 1 18 0 4
ARFGEF1 WILD-TYPE 48 84 4 98

Figure S1010.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.017

Table S3990.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARFGEF1 MUTATED 2 22 0
ARFGEF1 WILD-TYPE 24 157 84

Figure S1011.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0099

Table S3991.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARFGEF1 MUTATED 1 12 11 0 0
ARFGEF1 WILD-TYPE 68 46 101 1 49

Figure S1012.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.046

Table S3992.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ARFGEF1 MUTATED 2 13 1
ARFGEF1 WILD-TYPE 16 85 94

Figure S1013.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.028

Table S3993.  Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ARFGEF1 MUTATED 0 7 9 0 0
ARFGEF1 WILD-TYPE 17 27 81 69 1

Figure S1014.  Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.23

Table S3994.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HDLBP MUTATED 2 4 17
HDLBP WILD-TYPE 78 51 135
'HDLBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.25

Table S3995.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HDLBP MUTATED 13 0 6
HDLBP WILD-TYPE 108 37 80
'HDLBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S3996.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HDLBP MUTATED 17 1 5
HDLBP WILD-TYPE 147 12 75
'HDLBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0549 (Fisher's exact test), Q value = 0.23

Table S3997.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HDLBP MUTATED 1 15 0 7
HDLBP WILD-TYPE 48 87 4 95
'HDLBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.14

Table S3998.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HDLBP MUTATED 0 21 3
HDLBP WILD-TYPE 26 158 81

Figure S1015.  Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.025

Table S3999.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HDLBP MUTATED 1 12 10 0 1
HDLBP WILD-TYPE 68 46 102 1 48

Figure S1016.  Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.26

Table S4000.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HDLBP MUTATED 1 13 4
HDLBP WILD-TYPE 17 85 91
'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S4001.  Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HDLBP MUTATED 1 4 11 2 0
HDLBP WILD-TYPE 16 30 79 67 1
'SYCP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S4002.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SYCP2 MUTATED 3 0 14
SYCP2 WILD-TYPE 77 55 138

Figure S1017.  Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYCP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S4003.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SYCP2 MUTATED 7 1 2
SYCP2 WILD-TYPE 114 36 84
'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S4004.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SYCP2 MUTATED 13 0 2
SYCP2 WILD-TYPE 151 13 78
'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.053

Table S4005.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SYCP2 MUTATED 0 13 0 2
SYCP2 WILD-TYPE 49 89 4 100

Figure S1018.  Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00562 (Fisher's exact test), Q value = 0.073

Table S4006.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SYCP2 MUTATED 1 16 0
SYCP2 WILD-TYPE 25 163 84

Figure S1019.  Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.1

Table S4007.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SYCP2 MUTATED 2 9 6 0 0
SYCP2 WILD-TYPE 67 49 106 1 49

Figure S1020.  Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.069

Table S4008.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SYCP2 MUTATED 1 9 0
SYCP2 WILD-TYPE 17 89 95

Figure S1021.  Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.19

Table S4009.  Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SYCP2 MUTATED 0 4 6 0 0
SYCP2 WILD-TYPE 17 30 84 69 1

Figure S1022.  Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S4010.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TUBE1 MUTATED 0 1 6
TUBE1 WILD-TYPE 80 54 146
'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S4011.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TUBE1 MUTATED 4 0 1
TUBE1 WILD-TYPE 117 37 85
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.85

Table S4012.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TUBE1 MUTATED 3 0 2
TUBE1 WILD-TYPE 161 13 78
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S4013.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TUBE1 MUTATED 1 3 0 1
TUBE1 WILD-TYPE 48 99 4 101
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S4014.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TUBE1 MUTATED 0 6 1
TUBE1 WILD-TYPE 26 173 83
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S4015.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TUBE1 MUTATED 1 4 2 0 0
TUBE1 WILD-TYPE 68 54 110 1 49
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.49

Table S4016.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TUBE1 MUTATED 1 3 1
TUBE1 WILD-TYPE 17 95 94
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S4017.  Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TUBE1 MUTATED 1 2 2 0 0
TUBE1 WILD-TYPE 16 32 88 69 1
'PTPRJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00281 (Fisher's exact test), Q value = 0.051

Table S4018.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PTPRJ MUTATED 1 3 20
PTPRJ WILD-TYPE 79 52 132

Figure S1023.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPRJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S4019.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PTPRJ MUTATED 15 0 4
PTPRJ WILD-TYPE 106 37 82

Figure S1024.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S4020.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PTPRJ MUTATED 16 2 3
PTPRJ WILD-TYPE 148 11 77
'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00688 (Fisher's exact test), Q value = 0.083

Table S4021.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PTPRJ MUTATED 0 14 1 6
PTPRJ WILD-TYPE 49 88 3 96

Figure S1025.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.022

Table S4022.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PTPRJ MUTATED 0 23 1
PTPRJ WILD-TYPE 26 156 83

Figure S1026.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00066 (Fisher's exact test), Q value = 0.021

Table S4023.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PTPRJ MUTATED 1 12 10 0 1
PTPRJ WILD-TYPE 68 46 102 1 48

Figure S1027.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00515 (Fisher's exact test), Q value = 0.07

Table S4024.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PTPRJ MUTATED 1 14 2
PTPRJ WILD-TYPE 17 84 93

Figure S1028.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00972 (Fisher's exact test), Q value = 0.1

Table S4025.  Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PTPRJ MUTATED 0 2 14 1 0
PTPRJ WILD-TYPE 17 32 76 68 1

Figure S1029.  Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S4026.  Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MDM2 MUTATED 0 1 4
MDM2 WILD-TYPE 80 54 148
'MDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4027.  Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MDM2 MUTATED 2 0 2
MDM2 WILD-TYPE 119 37 84
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4028.  Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MDM2 MUTATED 2 0 1
MDM2 WILD-TYPE 162 13 79
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4029.  Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MDM2 MUTATED 0 2 0 1
MDM2 WILD-TYPE 49 100 4 101
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4030.  Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MDM2 MUTATED 0 4 1
MDM2 WILD-TYPE 26 175 83
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S4031.  Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MDM2 MUTATED 0 3 1 0 1
MDM2 WILD-TYPE 69 55 111 1 48
'MZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S4032.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MZF1 MUTATED 0 0 10
MZF1 WILD-TYPE 80 55 142

Figure S1030.  Get High-res Image Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S4033.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MZF1 MUTATED 7 1 2
MZF1 WILD-TYPE 114 36 84
'MZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.91

Table S4034.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MZF1 MUTATED 5 0 3
MZF1 WILD-TYPE 159 13 77
'MZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.75

Table S4035.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MZF1 MUTATED 1 5 0 2
MZF1 WILD-TYPE 48 97 4 100
'MZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.73

Table S4036.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MZF1 MUTATED 0 8 2
MZF1 WILD-TYPE 26 171 82
'MZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S4037.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MZF1 MUTATED 2 4 4 0 0
MZF1 WILD-TYPE 67 54 108 1 49
'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S4038.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MZF1 MUTATED 0 8 2
MZF1 WILD-TYPE 18 90 93
'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S4039.  Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MZF1 MUTATED 1 2 6 1 0
MZF1 WILD-TYPE 16 32 84 68 1
'SIK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S4040.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SIK1 MUTATED 0 0 5
SIK1 WILD-TYPE 80 55 147
'SIK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4041.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SIK1 MUTATED 3 0 2
SIK1 WILD-TYPE 118 37 84
'SIK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.85

Table S4042.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SIK1 MUTATED 3 0 2
SIK1 WILD-TYPE 161 13 78
'SIK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.94

Table S4043.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SIK1 MUTATED 0 3 0 2
SIK1 WILD-TYPE 49 99 4 100
'SIK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4044.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SIK1 MUTATED 0 4 1
SIK1 WILD-TYPE 26 175 83
'SIK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.76

Table S4045.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SIK1 MUTATED 0 1 3 0 1
SIK1 WILD-TYPE 69 57 109 1 48
'SIK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S4046.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SIK1 MUTATED 0 4 1
SIK1 WILD-TYPE 18 94 94
'SIK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.98

Table S4047.  Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SIK1 MUTATED 0 1 3 1 0
SIK1 WILD-TYPE 17 33 87 68 1
'PIGT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4048.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIGT MUTATED 0 1 7
PIGT WILD-TYPE 80 54 145
'PIGT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S4049.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIGT MUTATED 6 0 2
PIGT WILD-TYPE 115 37 84
'PIGT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S4050.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIGT MUTATED 5 1 1
PIGT WILD-TYPE 159 12 79
'PIGT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S4051.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIGT MUTATED 0 5 0 2
PIGT WILD-TYPE 49 97 4 100
'PIGT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4052.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIGT MUTATED 0 6 2
PIGT WILD-TYPE 26 173 82
'PIGT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4053.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIGT MUTATED 0 3 5 0 0
PIGT WILD-TYPE 69 55 107 1 49
'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S4054.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIGT MUTATED 0 6 2
PIGT WILD-TYPE 18 92 93
'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S4055.  Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIGT MUTATED 0 3 3 2 0
PIGT WILD-TYPE 17 31 87 67 1
'NUPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S4056.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NUPL2 MUTATED 0 1 6
NUPL2 WILD-TYPE 80 54 146
'NUPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.71

Table S4057.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NUPL2 MUTATED 2 0 3
NUPL2 WILD-TYPE 119 37 83
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4058.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NUPL2 MUTATED 4 0 2
NUPL2 WILD-TYPE 160 13 78
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.74

Table S4059.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NUPL2 MUTATED 0 4 0 2
NUPL2 WILD-TYPE 49 98 4 100
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S4060.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NUPL2 MUTATED 0 7 0
NUPL2 WILD-TYPE 26 172 84
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S4061.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NUPL2 MUTATED 0 2 5 0 0
NUPL2 WILD-TYPE 69 56 107 1 49
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S4062.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NUPL2 MUTATED 0 5 0
NUPL2 WILD-TYPE 18 93 95
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S4063.  Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NUPL2 MUTATED 0 0 5 0 0
NUPL2 WILD-TYPE 17 34 85 69 1
'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4064.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NOS3 MUTATED 1 2 7
NOS3 WILD-TYPE 79 53 145
'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S4065.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NOS3 MUTATED 6 0 2
NOS3 WILD-TYPE 115 37 84
'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S4066.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NOS3 MUTATED 8 1 1
NOS3 WILD-TYPE 156 12 79
'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.25

Table S4067.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NOS3 MUTATED 1 8 0 1
NOS3 WILD-TYPE 48 94 4 101
'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.28

Table S4068.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NOS3 MUTATED 1 9 0
NOS3 WILD-TYPE 25 170 84
'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4069.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NOS3 MUTATED 1 4 5 0 0
NOS3 WILD-TYPE 68 54 107 1 49
'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S4070.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NOS3 MUTATED 0 6 1
NOS3 WILD-TYPE 18 92 94
'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.52

Table S4071.  Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NOS3 MUTATED 0 3 3 1 0
NOS3 WILD-TYPE 17 31 87 68 1
'LUC7L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.85

Table S4072.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LUC7L3 MUTATED 1 2 3
LUC7L3 WILD-TYPE 79 53 149
'LUC7L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S4073.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LUC7L3 MUTATED 5 1 0
LUC7L3 WILD-TYPE 116 36 86
'LUC7L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.45

Table S4074.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LUC7L3 MUTATED 6 0 0
LUC7L3 WILD-TYPE 158 13 80
'LUC7L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 0.17

Table S4075.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LUC7L3 MUTATED 0 6 0 0
LUC7L3 WILD-TYPE 49 96 4 102

Figure S1031.  Get High-res Image Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S4076.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LUC7L3 MUTATED 1 5 0
LUC7L3 WILD-TYPE 25 174 84
'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0723 (Fisher's exact test), Q value = 0.26

Table S4077.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LUC7L3 MUTATED 1 4 1 0 0
LUC7L3 WILD-TYPE 68 54 111 1 49
'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S4078.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LUC7L3 MUTATED 0 5 1
LUC7L3 WILD-TYPE 18 93 94
'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S4079.  Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LUC7L3 MUTATED 0 3 3 0 0
LUC7L3 WILD-TYPE 17 31 87 69 1
'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 0.91

Table S4080.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LINGO4 MUTATED 2 1 6
LINGO4 WILD-TYPE 78 54 146
'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.5

Table S4081.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LINGO4 MUTATED 7 0 2
LINGO4 WILD-TYPE 114 37 84
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 0.93

Table S4082.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LINGO4 MUTATED 6 0 4
LINGO4 WILD-TYPE 158 13 76
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S4083.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LINGO4 MUTATED 0 6 0 4
LINGO4 WILD-TYPE 49 96 4 98
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.46

Table S4084.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LINGO4 MUTATED 0 9 1
LINGO4 WILD-TYPE 26 170 83
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S4085.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LINGO4 MUTATED 1 4 4 0 1
LINGO4 WILD-TYPE 68 54 108 1 48
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.95

Table S4086.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LINGO4 MUTATED 0 5 3
LINGO4 WILD-TYPE 18 93 92
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S4087.  Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LINGO4 MUTATED 0 2 5 1 0
LINGO4 WILD-TYPE 17 32 85 68 1
'CHRNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S4088.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CHRNB3 MUTATED 1 1 9
CHRNB3 WILD-TYPE 79 54 143
'CHRNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.94

Table S4089.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CHRNB3 MUTATED 4 0 2
CHRNB3 WILD-TYPE 117 37 84
'CHRNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4090.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CHRNB3 MUTATED 7 0 3
CHRNB3 WILD-TYPE 157 13 77
'CHRNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S4091.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CHRNB3 MUTATED 0 7 0 3
CHRNB3 WILD-TYPE 49 95 4 99
'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S4092.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CHRNB3 MUTATED 0 9 2
CHRNB3 WILD-TYPE 26 170 82
'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S4093.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CHRNB3 MUTATED 1 4 5 0 1
CHRNB3 WILD-TYPE 68 54 107 1 48
'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S4094.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CHRNB3 MUTATED 1 2 3
CHRNB3 WILD-TYPE 17 96 92
'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4095.  Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CHRNB3 MUTATED 0 1 3 2 0
CHRNB3 WILD-TYPE 17 33 87 67 1
'NARG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.23

Table S4096.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NARG2 MUTATED 0 2 9
NARG2 WILD-TYPE 80 53 143
'NARG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S4097.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NARG2 MUTATED 7 1 2
NARG2 WILD-TYPE 114 36 84
'NARG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 0.91

Table S4098.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NARG2 MUTATED 7 0 2
NARG2 WILD-TYPE 157 13 78
'NARG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S4099.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NARG2 MUTATED 0 7 0 2
NARG2 WILD-TYPE 49 95 4 100
'NARG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S4100.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NARG2 MUTATED 0 10 1
NARG2 WILD-TYPE 26 169 83
'NARG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.11

Table S4101.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NARG2 MUTATED 0 7 3 0 1
NARG2 WILD-TYPE 69 51 109 1 48

Figure S1032.  Get High-res Image Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.092

Table S4102.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NARG2 MUTATED 0 8 0
NARG2 WILD-TYPE 18 90 95

Figure S1033.  Get High-res Image Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S4103.  Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NARG2 MUTATED 0 2 6 0 0
NARG2 WILD-TYPE 17 32 84 69 1
'FLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S4104.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FLG MUTATED 14 11 36
FLG WILD-TYPE 66 44 116
'FLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S4105.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FLG MUTATED 31 6 14
FLG WILD-TYPE 90 31 72
'FLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.17

Table S4106.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FLG MUTATED 44 1 11
FLG WILD-TYPE 120 12 69

Figure S1034.  Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.023

Table S4107.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FLG MUTATED 8 35 1 12
FLG WILD-TYPE 41 67 3 90

Figure S1035.  Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00244 (Fisher's exact test), Q value = 0.046

Table S4108.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FLG MUTATED 5 49 8
FLG WILD-TYPE 21 130 76

Figure S1036.  Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.18

Table S4109.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FLG MUTATED 15 20 22 0 5
FLG WILD-TYPE 54 38 90 1 44

Figure S1037.  Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.013

Table S4110.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FLG MUTATED 3 31 8
FLG WILD-TYPE 15 67 87

Figure S1038.  Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.042

Table S4111.  Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FLG MUTATED 3 13 21 5 0
FLG WILD-TYPE 14 21 69 64 1

Figure S1039.  Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S4112.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PCBP2 MUTATED 0 0 4
PCBP2 WILD-TYPE 80 55 148
'PCBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S4113.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PCBP2 MUTATED 4 0 0
PCBP2 WILD-TYPE 117 37 86
'PCBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S4114.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PCBP2 MUTATED 4 0 0
PCBP2 WILD-TYPE 160 13 80
'PCBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S4115.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PCBP2 MUTATED 0 4 0 0
PCBP2 WILD-TYPE 49 98 4 102
'PCBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S4116.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PCBP2 MUTATED 0 4 0
PCBP2 WILD-TYPE 26 175 84
'PCBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.29

Table S4117.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PCBP2 MUTATED 0 3 1 0 0
PCBP2 WILD-TYPE 69 55 111 1 49
'PCBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S4118.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PCBP2 MUTATED 0 3 0
PCBP2 WILD-TYPE 18 95 95
'PCBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S4119.  Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PCBP2 MUTATED 0 2 1 0 0
PCBP2 WILD-TYPE 17 32 89 69 1
'PIAS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S4120.  Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIAS3 MUTATED 0 0 5
PIAS3 WILD-TYPE 80 55 147
'PIAS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.85

Table S4121.  Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIAS3 MUTATED 1 0 2
PIAS3 WILD-TYPE 120 37 84
'PIAS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4122.  Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIAS3 MUTATED 3 0 1
PIAS3 WILD-TYPE 161 13 79
'PIAS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.7

Table S4123.  Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIAS3 MUTATED 0 3 0 1
PIAS3 WILD-TYPE 49 99 4 101
'PIAS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S4124.  Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIAS3 MUTATED 0 5 0
PIAS3 WILD-TYPE 26 174 84
'PIAS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S4125.  Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIAS3 MUTATED 0 2 3 0 0
PIAS3 WILD-TYPE 69 56 109 1 49
'SERPINA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S4126.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SERPINA1 MUTATED 1 0 6
SERPINA1 WILD-TYPE 79 55 146
'SERPINA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.85

Table S4127.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SERPINA1 MUTATED 1 0 2
SERPINA1 WILD-TYPE 120 37 84
'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4128.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SERPINA1 MUTATED 4 0 2
SERPINA1 WILD-TYPE 160 13 78
'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4129.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SERPINA1 MUTATED 1 3 0 2
SERPINA1 WILD-TYPE 48 99 4 100
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S4130.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SERPINA1 MUTATED 0 6 1
SERPINA1 WILD-TYPE 26 173 83
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S4131.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SERPINA1 MUTATED 0 2 4 0 1
SERPINA1 WILD-TYPE 69 56 108 1 48
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4132.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SERPINA1 MUTATED 0 2 1
SERPINA1 WILD-TYPE 18 96 94
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4133.  Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SERPINA1 MUTATED 0 0 2 1 0
SERPINA1 WILD-TYPE 17 34 88 68 1
'PIWIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S4134.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIWIL2 MUTATED 0 0 6
PIWIL2 WILD-TYPE 80 55 146
'PIWIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.63

Table S4135.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIWIL2 MUTATED 4 0 1
PIWIL2 WILD-TYPE 117 37 85
'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.85

Table S4136.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIWIL2 MUTATED 3 0 2
PIWIL2 WILD-TYPE 161 13 78
'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.94

Table S4137.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIWIL2 MUTATED 0 3 0 2
PIWIL2 WILD-TYPE 49 99 4 100
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.51

Table S4138.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIWIL2 MUTATED 0 6 0
PIWIL2 WILD-TYPE 26 173 84
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.12

Table S4139.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIWIL2 MUTATED 0 5 1 0 0
PIWIL2 WILD-TYPE 69 53 111 1 49

Figure S1040.  Get High-res Image Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S4140.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIWIL2 MUTATED 0 5 0
PIWIL2 WILD-TYPE 18 93 95
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.27

Table S4141.  Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIWIL2 MUTATED 0 3 2 0 0
PIWIL2 WILD-TYPE 17 31 88 69 1
'TMEM79 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S4142.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TMEM79 MUTATED 0 0 6
TMEM79 WILD-TYPE 80 55 146
'TMEM79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S4143.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TMEM79 MUTATED 5 0 0
TMEM79 WILD-TYPE 116 37 86
'TMEM79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4144.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TMEM79 MUTATED 4 0 1
TMEM79 WILD-TYPE 160 13 79
'TMEM79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S4145.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TMEM79 MUTATED 0 4 0 1
TMEM79 WILD-TYPE 49 98 4 101
'TMEM79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.51

Table S4146.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TMEM79 MUTATED 0 6 0
TMEM79 WILD-TYPE 26 173 84
'TMEM79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S4147.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TMEM79 MUTATED 0 3 3 0 0
TMEM79 WILD-TYPE 69 55 109 1 49
'TMEM79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S4148.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TMEM79 MUTATED 0 4 0
TMEM79 WILD-TYPE 18 94 95
'TMEM79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 0.21

Table S4149.  Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TMEM79 MUTATED 0 3 1 0 0
TMEM79 WILD-TYPE 17 31 89 69 1

Figure S1041.  Get High-res Image Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S4150.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HIST1H1B MUTATED 2 0 7
HIST1H1B WILD-TYPE 78 55 145
'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.26

Table S4151.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HIST1H1B MUTATED 6 1 0
HIST1H1B WILD-TYPE 115 36 86
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S4152.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HIST1H1B MUTATED 7 0 1
HIST1H1B WILD-TYPE 157 13 79
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S4153.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HIST1H1B MUTATED 1 6 0 1
HIST1H1B WILD-TYPE 48 96 4 101
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S4154.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HIST1H1B MUTATED 1 8 0
HIST1H1B WILD-TYPE 25 171 84
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.68

Table S4155.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HIST1H1B MUTATED 2 3 4 0 0
HIST1H1B WILD-TYPE 67 55 108 1 49
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.19

Table S4156.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HIST1H1B MUTATED 1 6 0
HIST1H1B WILD-TYPE 17 92 95

Figure S1042.  Get High-res Image Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S4157.  Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HIST1H1B MUTATED 1 2 4 0 0
HIST1H1B WILD-TYPE 16 32 86 69 1
'FGF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S4158.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FGF13 MUTATED 0 0 9
FGF13 WILD-TYPE 80 55 143

Figure S1043.  Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FGF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4159.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FGF13 MUTATED 6 0 1
FGF13 WILD-TYPE 115 37 85
'FGF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S4160.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FGF13 MUTATED 6 1 2
FGF13 WILD-TYPE 158 12 78
'FGF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S4161.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FGF13 MUTATED 0 4 0 5
FGF13 WILD-TYPE 49 98 4 97
'FGF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.3

Table S4162.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FGF13 MUTATED 1 8 0
FGF13 WILD-TYPE 25 171 84
'FGF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.26

Table S4163.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FGF13 MUTATED 0 4 5 0 0
FGF13 WILD-TYPE 69 54 107 1 49
'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S4164.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FGF13 MUTATED 0 5 2
FGF13 WILD-TYPE 18 93 93
'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.32

Table S4165.  Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FGF13 MUTATED 0 1 6 0 0
FGF13 WILD-TYPE 17 33 84 69 1
'SCAMP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S4166.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SCAMP2 MUTATED 0 1 5
SCAMP2 WILD-TYPE 80 54 147
'SCAMP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S4167.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SCAMP2 MUTATED 4 0 0
SCAMP2 WILD-TYPE 117 37 86
'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S4168.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SCAMP2 MUTATED 6 0 0
SCAMP2 WILD-TYPE 158 13 80
'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S4169.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SCAMP2 MUTATED 0 5 0 1
SCAMP2 WILD-TYPE 49 97 4 101
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.51

Table S4170.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SCAMP2 MUTATED 0 6 0
SCAMP2 WILD-TYPE 26 173 84
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S4171.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SCAMP2 MUTATED 0 3 2 0 1
SCAMP2 WILD-TYPE 69 55 110 1 48
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4172.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SCAMP2 MUTATED 0 2 2
SCAMP2 WILD-TYPE 18 96 93
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4173.  Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SCAMP2 MUTATED 0 1 2 1 0
SCAMP2 WILD-TYPE 17 33 88 68 1
'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S4174.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC22A16 MUTATED 0 1 10
SLC22A16 WILD-TYPE 80 54 142

Figure S1044.  Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.27

Table S4175.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC22A16 MUTATED 8 0 1
SLC22A16 WILD-TYPE 113 37 85
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S4176.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC22A16 MUTATED 9 0 1
SLC22A16 WILD-TYPE 155 13 79
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.26

Table S4177.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC22A16 MUTATED 0 8 0 2
SLC22A16 WILD-TYPE 49 94 4 100
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S4178.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC22A16 MUTATED 0 10 1
SLC22A16 WILD-TYPE 26 169 83
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S4179.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC22A16 MUTATED 1 7 3 0 0
SLC22A16 WILD-TYPE 68 51 109 1 49

Figure S1045.  Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.27

Table S4180.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC22A16 MUTATED 0 7 1
SLC22A16 WILD-TYPE 18 91 94
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.51

Table S4181.  Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC22A16 MUTATED 0 3 4 1 0
SLC22A16 WILD-TYPE 17 31 86 68 1
'GLYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.18

Table S4182.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GLYR1 MUTATED 0 3 10
GLYR1 WILD-TYPE 80 52 142

Figure S1046.  Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.27

Table S4183.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GLYR1 MUTATED 8 0 1
GLYR1 WILD-TYPE 113 37 85
'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.82

Table S4184.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GLYR1 MUTATED 8 0 2
GLYR1 WILD-TYPE 156 13 78
'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.26

Table S4185.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GLYR1 MUTATED 0 8 0 2
GLYR1 WILD-TYPE 49 94 4 100
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S4186.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GLYR1 MUTATED 1 12 0
GLYR1 WILD-TYPE 25 167 84

Figure S1047.  Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S4187.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GLYR1 MUTATED 1 5 7 0 0
GLYR1 WILD-TYPE 68 53 105 1 49
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S4188.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GLYR1 MUTATED 1 6 1
GLYR1 WILD-TYPE 17 92 94
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4189.  Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GLYR1 MUTATED 0 2 5 1 0
GLYR1 WILD-TYPE 17 32 85 68 1
'LRRC43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.12

Table S4190.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LRRC43 MUTATED 0 0 9
LRRC43 WILD-TYPE 80 55 143

Figure S1048.  Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRRC43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S4191.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LRRC43 MUTATED 7 0 1
LRRC43 WILD-TYPE 114 37 85
'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S4192.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LRRC43 MUTATED 8 0 2
LRRC43 WILD-TYPE 156 13 78
'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S4193.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LRRC43 MUTATED 0 7 0 3
LRRC43 WILD-TYPE 49 95 4 99
'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S4194.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LRRC43 MUTATED 0 9 1
LRRC43 WILD-TYPE 26 170 83
'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00776 (Fisher's exact test), Q value = 0.087

Table S4195.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LRRC43 MUTATED 1 7 2 0 0
LRRC43 WILD-TYPE 68 51 110 1 49

Figure S1049.  Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 0.95

Table S4196.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LRRC43 MUTATED 0 5 3
LRRC43 WILD-TYPE 18 93 92
'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.51

Table S4197.  Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LRRC43 MUTATED 0 3 4 1 0
LRRC43 WILD-TYPE 17 31 86 68 1
'NLRC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0046

Table S4198.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NLRC5 MUTATED 0 0 19
NLRC5 WILD-TYPE 80 55 133

Figure S1050.  Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLRC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S4199.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NLRC5 MUTATED 10 0 3
NLRC5 WILD-TYPE 111 37 83
'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S4200.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NLRC5 MUTATED 13 1 3
NLRC5 WILD-TYPE 151 12 77
'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S4201.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NLRC5 MUTATED 0 13 0 4
NLRC5 WILD-TYPE 49 89 4 98

Figure S1051.  Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.093

Table S4202.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NLRC5 MUTATED 0 18 1
NLRC5 WILD-TYPE 26 161 83

Figure S1052.  Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0099

Table S4203.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NLRC5 MUTATED 0 10 9 0 0
NLRC5 WILD-TYPE 69 48 103 1 49

Figure S1053.  Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S4204.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NLRC5 MUTATED 0 11 2
NLRC5 WILD-TYPE 18 87 93

Figure S1054.  Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.2

Table S4205.  Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NLRC5 MUTATED 0 1 11 1 0
NLRC5 WILD-TYPE 17 33 79 68 1

Figure S1055.  Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.23

Table S4206.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EAF2 MUTATED 0 0 7
EAF2 WILD-TYPE 80 55 145
'EAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S4207.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EAF2 MUTATED 5 0 0
EAF2 WILD-TYPE 116 37 86
'EAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.86

Table S4208.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EAF2 MUTATED 5 0 1
EAF2 WILD-TYPE 159 13 79
'EAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S4209.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EAF2 MUTATED 0 5 0 1
EAF2 WILD-TYPE 49 97 4 101
'EAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4210.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EAF2 MUTATED 0 7 0
EAF2 WILD-TYPE 26 172 84
'EAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S4211.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EAF2 MUTATED 0 5 2 0 0
EAF2 WILD-TYPE 69 53 110 1 49

Figure S1056.  Get High-res Image Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S4212.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EAF2 MUTATED 0 4 0
EAF2 WILD-TYPE 18 94 95
'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S4213.  Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EAF2 MUTATED 0 1 3 0 0
EAF2 WILD-TYPE 17 33 87 69 1
'PHF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S4214.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PHF20 MUTATED 2 1 8
PHF20 WILD-TYPE 78 54 144
'PHF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4215.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PHF20 MUTATED 4 1 3
PHF20 WILD-TYPE 117 36 83
'PHF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S4216.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PHF20 MUTATED 8 1 1
PHF20 WILD-TYPE 156 12 79
'PHF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S4217.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PHF20 MUTATED 1 7 1 1
PHF20 WILD-TYPE 48 95 3 101

Figure S1057.  Get High-res Image Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PHF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.49

Table S4218.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PHF20 MUTATED 1 9 1
PHF20 WILD-TYPE 25 170 83
'PHF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S4219.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PHF20 MUTATED 2 4 5 0 0
PHF20 WILD-TYPE 67 54 107 1 49
'PHF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.27

Table S4220.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PHF20 MUTATED 0 7 1
PHF20 WILD-TYPE 18 91 94
'PHF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S4221.  Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PHF20 MUTATED 0 3 5 0 0
PHF20 WILD-TYPE 17 31 85 69 1
'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S4222.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
UBXN6 MUTATED 0 1 11
UBXN6 WILD-TYPE 80 54 141

Figure S1058.  Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.032

Table S4223.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
UBXN6 MUTATED 11 0 0
UBXN6 WILD-TYPE 110 37 86

Figure S1059.  Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.84

Table S4224.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
UBXN6 MUTATED 9 0 2
UBXN6 WILD-TYPE 155 13 78
'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S4225.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
UBXN6 MUTATED 0 8 0 3
UBXN6 WILD-TYPE 49 94 4 99
'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.14

Table S4226.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UBXN6 MUTATED 0 12 0
UBXN6 WILD-TYPE 26 167 84

Figure S1060.  Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00425 (Fisher's exact test), Q value = 0.063

Table S4227.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UBXN6 MUTATED 1 8 3 0 0
UBXN6 WILD-TYPE 68 50 109 1 49

Figure S1061.  Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 0.21

Table S4228.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
UBXN6 MUTATED 0 8 1
UBXN6 WILD-TYPE 18 90 94

Figure S1062.  Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0969 (Fisher's exact test), Q value = 0.29

Table S4229.  Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
UBXN6 MUTATED 0 2 7 0 0
UBXN6 WILD-TYPE 17 32 83 69 1
'ZNF367 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S4230.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF367 MUTATED 0 0 4
ZNF367 WILD-TYPE 80 55 148
'ZNF367 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S4231.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF367 MUTATED 3 0 0
ZNF367 WILD-TYPE 118 37 86
'ZNF367 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4232.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF367 MUTATED 3 0 1
ZNF367 WILD-TYPE 161 13 79
'ZNF367 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.7

Table S4233.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF367 MUTATED 0 3 0 1
ZNF367 WILD-TYPE 49 99 4 101
'ZNF367 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4234.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF367 MUTATED 0 3 1
ZNF367 WILD-TYPE 26 176 83
'ZNF367 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.5

Table S4235.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF367 MUTATED 0 2 1 0 1
ZNF367 WILD-TYPE 69 56 111 1 48
'ZNF367 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4236.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF367 MUTATED 0 2 1
ZNF367 WILD-TYPE 18 96 94
'ZNF367 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4237.  Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF367 MUTATED 0 0 2 1 0
ZNF367 WILD-TYPE 17 34 88 68 1
'NEK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.2

Table S4238.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NEK8 MUTATED 1 0 10
NEK8 WILD-TYPE 79 55 142

Figure S1063.  Get High-res Image Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NEK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 0.98

Table S4239.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NEK8 MUTATED 6 1 3
NEK8 WILD-TYPE 115 36 83
'NEK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4240.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NEK8 MUTATED 6 0 2
NEK8 WILD-TYPE 158 13 78
'NEK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S4241.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NEK8 MUTATED 0 6 0 2
NEK8 WILD-TYPE 49 96 4 100
'NEK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S4242.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NEK8 MUTATED 0 11 0
NEK8 WILD-TYPE 26 168 84

Figure S1064.  Get High-res Image Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NEK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S4243.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NEK8 MUTATED 1 5 5 0 0
NEK8 WILD-TYPE 68 53 107 1 49
'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S4244.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NEK8 MUTATED 0 6 2
NEK8 WILD-TYPE 18 92 93
'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S4245.  Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NEK8 MUTATED 1 2 5 0 0
NEK8 WILD-TYPE 16 32 85 69 1
'ZNF292 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.012

Table S4246.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF292 MUTATED 1 0 19
ZNF292 WILD-TYPE 79 55 133

Figure S1065.  Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF292 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S4247.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF292 MUTATED 14 1 2
ZNF292 WILD-TYPE 107 36 84

Figure S1066.  Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S4248.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF292 MUTATED 16 0 3
ZNF292 WILD-TYPE 148 13 77
'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.054

Table S4249.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF292 MUTATED 0 15 0 4
ZNF292 WILD-TYPE 49 87 4 98

Figure S1067.  Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.24

Table S4250.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF292 MUTATED 1 18 2
ZNF292 WILD-TYPE 25 161 82
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.014

Table S4251.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF292 MUTATED 0 11 9 0 1
ZNF292 WILD-TYPE 69 47 103 1 48

Figure S1068.  Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 0.052

Table S4252.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF292 MUTATED 1 13 1
ZNF292 WILD-TYPE 17 85 94

Figure S1069.  Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.22

Table S4253.  Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF292 MUTATED 0 3 11 1 0
ZNF292 WILD-TYPE 17 31 79 68 1
'NT5DC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S4254.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NT5DC1 MUTATED 0 0 6
NT5DC1 WILD-TYPE 80 55 146
'NT5DC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S4255.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NT5DC1 MUTATED 5 0 1
NT5DC1 WILD-TYPE 116 37 85
'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4256.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NT5DC1 MUTATED 4 0 2
NT5DC1 WILD-TYPE 160 13 78
'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S4257.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NT5DC1 MUTATED 0 4 0 2
NT5DC1 WILD-TYPE 49 98 4 100
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S4258.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NT5DC1 MUTATED 0 6 0
NT5DC1 WILD-TYPE 26 173 84
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.25

Table S4259.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NT5DC1 MUTATED 1 4 1 0 0
NT5DC1 WILD-TYPE 68 54 111 1 49
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.2

Table S4260.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NT5DC1 MUTATED 0 6 0
NT5DC1 WILD-TYPE 18 92 95

Figure S1070.  Get High-res Image Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.45

Table S4261.  Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NT5DC1 MUTATED 0 1 5 0 0
NT5DC1 WILD-TYPE 17 33 85 69 1
'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.82

Table S4262.  Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DUSP9 MUTATED 2 0 3
DUSP9 WILD-TYPE 78 55 149
'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S4263.  Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DUSP9 MUTATED 2 1 0
DUSP9 WILD-TYPE 119 36 86
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S4264.  Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DUSP9 MUTATED 4 1 0
DUSP9 WILD-TYPE 160 12 80
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S4265.  Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DUSP9 MUTATED 1 4 0 0
DUSP9 WILD-TYPE 48 98 4 102
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.2

Table S4266.  Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DUSP9 MUTATED 2 3 0
DUSP9 WILD-TYPE 24 176 84

Figure S1071.  Get High-res Image Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 0.95

Table S4267.  Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DUSP9 MUTATED 2 1 2 0 0
DUSP9 WILD-TYPE 67 57 110 1 49
'ABCA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S4268.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ABCA5 MUTATED 4 2 14
ABCA5 WILD-TYPE 76 53 138
'ABCA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.64

Table S4269.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ABCA5 MUTATED 11 2 4
ABCA5 WILD-TYPE 110 35 82
'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S4270.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ABCA5 MUTATED 15 0 1
ABCA5 WILD-TYPE 149 13 79

Figure S1072.  Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0446 (Fisher's exact test), Q value = 0.2

Table S4271.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ABCA5 MUTATED 1 12 0 3
ABCA5 WILD-TYPE 48 90 4 99

Figure S1073.  Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.067

Table S4272.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ABCA5 MUTATED 0 19 1
ABCA5 WILD-TYPE 26 160 83

Figure S1074.  Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S4273.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ABCA5 MUTATED 2 7 10 0 1
ABCA5 WILD-TYPE 67 51 102 1 48
'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.16

Table S4274.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ABCA5 MUTATED 1 11 2
ABCA5 WILD-TYPE 17 87 93

Figure S1075.  Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.27

Table S4275.  Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ABCA5 MUTATED 1 6 5 2 0
ABCA5 WILD-TYPE 16 28 85 67 1
'GFOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.5

Table S4276.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GFOD1 MUTATED 2 1 10
GFOD1 WILD-TYPE 78 54 142
'GFOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S4277.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GFOD1 MUTATED 6 0 3
GFOD1 WILD-TYPE 115 37 83
'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S4278.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GFOD1 MUTATED 9 1 3
GFOD1 WILD-TYPE 155 12 77
'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S4279.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GFOD1 MUTATED 1 8 0 4
GFOD1 WILD-TYPE 48 94 4 98
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.27

Table S4280.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GFOD1 MUTATED 0 12 1
GFOD1 WILD-TYPE 26 167 83
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S4281.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GFOD1 MUTATED 1 5 7 0 0
GFOD1 WILD-TYPE 68 53 105 1 49
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.21

Table S4282.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GFOD1 MUTATED 0 8 1
GFOD1 WILD-TYPE 18 90 94
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S4283.  Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GFOD1 MUTATED 0 2 6 1 0
GFOD1 WILD-TYPE 17 32 84 68 1
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S4284.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF334 MUTATED 1 1 10
ZNF334 WILD-TYPE 79 54 142
'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S4285.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF334 MUTATED 7 1 1
ZNF334 WILD-TYPE 114 36 85
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S4286.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF334 MUTATED 9 1 1
ZNF334 WILD-TYPE 155 12 79
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.19

Table S4287.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF334 MUTATED 0 9 0 2
ZNF334 WILD-TYPE 49 93 4 100

Figure S1076.  Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.19

Table S4288.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF334 MUTATED 1 11 0
ZNF334 WILD-TYPE 25 168 84

Figure S1077.  Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S4289.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF334 MUTATED 1 7 4 0 0
ZNF334 WILD-TYPE 68 51 108 1 49

Figure S1078.  Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.19

Table S4290.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF334 MUTATED 1 6 0
ZNF334 WILD-TYPE 17 92 95

Figure S1079.  Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S4291.  Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF334 MUTATED 0 3 4 0 0
ZNF334 WILD-TYPE 17 31 86 69 1
'MUT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S4292.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MUT MUTATED 0 0 6
MUT WILD-TYPE 80 55 146
'MUT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.63

Table S4293.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MUT MUTATED 4 0 1
MUT WILD-TYPE 117 37 85
'MUT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.86

Table S4294.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MUT MUTATED 5 0 1
MUT WILD-TYPE 159 13 79
'MUT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S4295.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MUT MUTATED 0 5 0 1
MUT WILD-TYPE 49 97 4 101
'MUT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S4296.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MUT MUTATED 0 6 0
MUT WILD-TYPE 26 173 84
'MUT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S4297.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MUT MUTATED 0 2 4 0 0
MUT WILD-TYPE 69 56 108 1 49
'MUT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S4298.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MUT MUTATED 1 3 0
MUT WILD-TYPE 17 95 95
'MUT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4299.  Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MUT MUTATED 0 1 3 0 0
MUT WILD-TYPE 17 33 87 69 1
'MGST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S4300.  Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MGST2 MUTATED 0 0 3
MGST2 WILD-TYPE 80 55 149
'MGST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S4301.  Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MGST2 MUTATED 3 0 0
MGST2 WILD-TYPE 118 37 86
'MGST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.74

Table S4302.  Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MGST2 MUTATED 3 0 0
MGST2 WILD-TYPE 161 13 80
'MGST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S4303.  Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MGST2 MUTATED 0 3 0 0
MGST2 WILD-TYPE 49 99 4 102
'MGST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S4304.  Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MGST2 MUTATED 0 3 0
MGST2 WILD-TYPE 26 176 84
'MGST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S4305.  Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MGST2 MUTATED 0 2 1 0 0
MGST2 WILD-TYPE 69 56 111 1 49
'GPATCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S4306.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPATCH4 MUTATED 3 0 5
GPATCH4 WILD-TYPE 77 55 147
'GPATCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4307.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPATCH4 MUTATED 5 1 0
GPATCH4 WILD-TYPE 116 36 86
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S4308.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPATCH4 MUTATED 6 1 1
GPATCH4 WILD-TYPE 158 12 79
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.5

Table S4309.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPATCH4 MUTATED 3 4 0 1
GPATCH4 WILD-TYPE 46 98 4 101
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S4310.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPATCH4 MUTATED 1 7 0
GPATCH4 WILD-TYPE 25 172 84
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00247 (Fisher's exact test), Q value = 0.046

Table S4311.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPATCH4 MUTATED 2 6 0 0 0
GPATCH4 WILD-TYPE 67 52 112 1 49

Figure S1080.  Get High-res Image Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.2

Table S4312.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPATCH4 MUTATED 0 6 0
GPATCH4 WILD-TYPE 18 92 95

Figure S1081.  Get High-res Image Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S4313.  Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPATCH4 MUTATED 0 1 5 0 0
GPATCH4 WILD-TYPE 17 33 85 69 1
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S4314.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAP2K1 MUTATED 1 0 4
MAP2K1 WILD-TYPE 79 55 148
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4315.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAP2K1 MUTATED 3 0 2
MAP2K1 WILD-TYPE 118 37 84
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S4316.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAP2K1 MUTATED 4 1 0
MAP2K1 WILD-TYPE 160 12 80
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4317.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAP2K1 MUTATED 1 2 0 2
MAP2K1 WILD-TYPE 48 100 4 100
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S4318.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAP2K1 MUTATED 0 5 0
MAP2K1 WILD-TYPE 26 174 84
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S4319.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAP2K1 MUTATED 0 2 2 0 1
MAP2K1 WILD-TYPE 69 56 110 1 48
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.64

Table S4320.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAP2K1 MUTATED 0 4 1
MAP2K1 WILD-TYPE 18 94 94
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S4321.  Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAP2K1 MUTATED 0 1 3 1 0
MAP2K1 WILD-TYPE 17 33 87 68 1
'TCEAL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S4322.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TCEAL5 MUTATED 0 1 5
TCEAL5 WILD-TYPE 80 54 147
'TCEAL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.85

Table S4323.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TCEAL5 MUTATED 3 0 3
TCEAL5 WILD-TYPE 118 37 83
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S4324.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TCEAL5 MUTATED 4 1 1
TCEAL5 WILD-TYPE 160 12 79
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.73

Table S4325.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TCEAL5 MUTATED 0 2 0 4
TCEAL5 WILD-TYPE 49 100 4 98
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.91

Table S4326.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TCEAL5 MUTATED 0 5 1
TCEAL5 WILD-TYPE 26 174 83
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.81

Table S4327.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TCEAL5 MUTATED 1 1 4 0 0
TCEAL5 WILD-TYPE 68 57 108 1 49
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.2

Table S4328.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TCEAL5 MUTATED 0 6 0
TCEAL5 WILD-TYPE 18 92 95

Figure S1082.  Get High-res Image Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.42

Table S4329.  Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TCEAL5 MUTATED 0 2 4 0 0
TCEAL5 WILD-TYPE 17 32 86 69 1
'GANAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S4330.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GANAB MUTATED 0 0 10
GANAB WILD-TYPE 80 55 142

Figure S1083.  Get High-res Image Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GANAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.26

Table S4331.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GANAB MUTATED 8 0 1
GANAB WILD-TYPE 113 37 85
'GANAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4332.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GANAB MUTATED 7 0 3
GANAB WILD-TYPE 157 13 77
'GANAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S4333.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GANAB MUTATED 0 6 0 4
GANAB WILD-TYPE 49 96 4 98
'GANAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S4334.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GANAB MUTATED 0 8 2
GANAB WILD-TYPE 26 171 82
'GANAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.27

Table S4335.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GANAB MUTATED 0 5 4 0 1
GANAB WILD-TYPE 69 53 108 1 48
'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S4336.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GANAB MUTATED 0 7 2
GANAB WILD-TYPE 18 91 93
'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S4337.  Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GANAB MUTATED 0 1 7 1 0
GANAB WILD-TYPE 17 33 83 68 1
'PIAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.52

Table S4338.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIAS1 MUTATED 1 1 8
PIAS1 WILD-TYPE 79 54 144
'PIAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4339.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIAS1 MUTATED 5 1 3
PIAS1 WILD-TYPE 116 36 83
'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S4340.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIAS1 MUTATED 6 1 2
PIAS1 WILD-TYPE 158 12 78
'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 0.88

Table S4341.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIAS1 MUTATED 1 5 0 3
PIAS1 WILD-TYPE 48 97 4 99
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S4342.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIAS1 MUTATED 0 9 1
PIAS1 WILD-TYPE 26 170 83
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S4343.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIAS1 MUTATED 1 5 3 0 1
PIAS1 WILD-TYPE 68 53 109 1 48
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S4344.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIAS1 MUTATED 0 6 3
PIAS1 WILD-TYPE 18 92 92
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S4345.  Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIAS1 MUTATED 1 3 4 1 0
PIAS1 WILD-TYPE 16 31 86 68 1
'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.021

Table S4346.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
YLPM1 MUTATED 1 0 17
YLPM1 WILD-TYPE 79 55 135

Figure S1084.  Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.18

Table S4347.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
YLPM1 MUTATED 11 0 2
YLPM1 WILD-TYPE 110 37 84

Figure S1085.  Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S4348.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
YLPM1 MUTATED 11 1 3
YLPM1 WILD-TYPE 153 12 77
'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S4349.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
YLPM1 MUTATED 1 10 0 4
YLPM1 WILD-TYPE 48 92 4 98
'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.18

Table S4350.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
YLPM1 MUTATED 1 16 1
YLPM1 WILD-TYPE 25 163 83

Figure S1086.  Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00897 (Fisher's exact test), Q value = 0.095

Table S4351.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
YLPM1 MUTATED 1 8 9 0 0
YLPM1 WILD-TYPE 68 50 103 1 49

Figure S1087.  Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.12

Table S4352.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
YLPM1 MUTATED 1 10 1
YLPM1 WILD-TYPE 17 88 94

Figure S1088.  Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.22

Table S4353.  Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
YLPM1 MUTATED 1 3 8 0 0
YLPM1 WILD-TYPE 16 31 82 69 1
'SMAD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S4354.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SMAD7 MUTATED 1 0 3
SMAD7 WILD-TYPE 79 55 149
'SMAD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.48

Table S4355.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SMAD7 MUTATED 2 1 0
SMAD7 WILD-TYPE 119 36 86
'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S4356.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SMAD7 MUTATED 3 0 2
SMAD7 WILD-TYPE 161 13 78
'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4357.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SMAD7 MUTATED 1 2 0 2
SMAD7 WILD-TYPE 48 100 4 100
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S4358.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SMAD7 MUTATED 1 4 0
SMAD7 WILD-TYPE 25 175 84
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S4359.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SMAD7 MUTATED 1 1 3 0 0
SMAD7 WILD-TYPE 68 57 109 1 49
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S4360.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SMAD7 MUTATED 0 3 0
SMAD7 WILD-TYPE 18 95 95
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.35

Table S4361.  Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SMAD7 MUTATED 0 2 1 0 0
SMAD7 WILD-TYPE 17 32 89 69 1
'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S4362.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PPARGC1B MUTATED 0 1 6
PPARGC1B WILD-TYPE 80 54 146
'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.23

Table S4363.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PPARGC1B MUTATED 6 0 0
PPARGC1B WILD-TYPE 115 37 86
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S4364.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PPARGC1B MUTATED 6 0 1
PPARGC1B WILD-TYPE 158 13 79
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S4365.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PPARGC1B MUTATED 0 6 0 1
PPARGC1B WILD-TYPE 49 96 4 101
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S4366.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PPARGC1B MUTATED 0 7 0
PPARGC1B WILD-TYPE 26 172 84
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 0.27

Table S4367.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PPARGC1B MUTATED 0 4 3 0 0
PPARGC1B WILD-TYPE 69 54 109 1 49
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.2

Table S4368.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PPARGC1B MUTATED 0 6 0
PPARGC1B WILD-TYPE 18 92 95

Figure S1089.  Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S4369.  Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PPARGC1B MUTATED 0 3 3 0 0
PPARGC1B WILD-TYPE 17 31 87 69 1
'TSPYL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.25

Table S4370.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TSPYL5 MUTATED 0 1 8
TSPYL5 WILD-TYPE 80 54 144
'TSPYL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S4371.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TSPYL5 MUTATED 7 0 1
TSPYL5 WILD-TYPE 114 37 85
'TSPYL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S4372.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TSPYL5 MUTATED 6 1 2
TSPYL5 WILD-TYPE 158 12 78
'TSPYL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.2

Table S4373.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TSPYL5 MUTATED 0 6 1 2
TSPYL5 WILD-TYPE 49 96 3 100

Figure S1090.  Get High-res Image Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.27

Table S4374.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TSPYL5 MUTATED 0 9 0
TSPYL5 WILD-TYPE 26 170 84
'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.2

Table S4375.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TSPYL5 MUTATED 0 1 8 0 0
TSPYL5 WILD-TYPE 69 57 104 1 49

Figure S1091.  Get High-res Image Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.27

Table S4376.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TSPYL5 MUTATED 0 7 1
TSPYL5 WILD-TYPE 18 91 94
'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.29

Table S4377.  Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TSPYL5 MUTATED 0 1 7 0 0
TSPYL5 WILD-TYPE 17 33 83 69 1
'UPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S4378.  Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
UPK2 MUTATED 0 0 3
UPK2 WILD-TYPE 80 55 149
'UPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S4379.  Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UPK2 MUTATED 0 3 0
UPK2 WILD-TYPE 26 176 84
'UPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S4380.  Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UPK2 MUTATED 0 2 1 0 0
UPK2 WILD-TYPE 69 56 111 1 49
'BCKDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.23

Table S4381.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BCKDHA MUTATED 0 2 9
BCKDHA WILD-TYPE 80 53 143
'BCKDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.63

Table S4382.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BCKDHA MUTATED 6 0 3
BCKDHA WILD-TYPE 115 37 83
'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4383.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BCKDHA MUTATED 7 0 3
BCKDHA WILD-TYPE 157 13 77
'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S4384.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BCKDHA MUTATED 0 7 0 3
BCKDHA WILD-TYPE 49 95 4 99
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S4385.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BCKDHA MUTATED 1 10 1
BCKDHA WILD-TYPE 25 169 83
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.12

Table S4386.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BCKDHA MUTATED 3 7 2 0 0
BCKDHA WILD-TYPE 66 51 110 1 49

Figure S1092.  Get High-res Image Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S4387.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BCKDHA MUTATED 1 6 1
BCKDHA WILD-TYPE 17 92 94
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.85

Table S4388.  Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BCKDHA MUTATED 0 2 4 2 0
BCKDHA WILD-TYPE 17 32 86 67 1
'BRD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.035

Table S4389.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BRD3 MUTATED 0 1 15
BRD3 WILD-TYPE 80 54 137

Figure S1093.  Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.18

Table S4390.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BRD3 MUTATED 11 0 2
BRD3 WILD-TYPE 110 37 84

Figure S1094.  Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S4391.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BRD3 MUTATED 15 0 1
BRD3 WILD-TYPE 149 13 79

Figure S1095.  Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'BRD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.032

Table S4392.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BRD3 MUTATED 0 14 0 2
BRD3 WILD-TYPE 49 88 4 100

Figure S1096.  Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S4393.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BRD3 MUTATED 0 15 1
BRD3 WILD-TYPE 26 164 83

Figure S1097.  Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S4394.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BRD3 MUTATED 2 6 8 0 0
BRD3 WILD-TYPE 67 52 104 1 49
'BRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S4395.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BRD3 MUTATED 1 9 1
BRD3 WILD-TYPE 17 89 94

Figure S1098.  Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S4396.  Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BRD3 MUTATED 0 2 8 1 0
BRD3 WILD-TYPE 17 32 82 68 1
'PNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S4397.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PNMT MUTATED 1 1 6
PNMT WILD-TYPE 79 54 146
'PNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.94

Table S4398.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PNMT MUTATED 4 0 2
PNMT WILD-TYPE 117 37 84
'PNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.91

Table S4399.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PNMT MUTATED 5 0 3
PNMT WILD-TYPE 159 13 77
'PNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.75

Table S4400.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PNMT MUTATED 1 5 0 2
PNMT WILD-TYPE 48 97 4 100
'PNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4401.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PNMT MUTATED 0 6 2
PNMT WILD-TYPE 26 173 82
'PNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 0.97

Table S4402.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PNMT MUTATED 1 2 4 0 1
PNMT WILD-TYPE 68 56 108 1 48
'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4403.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PNMT MUTATED 0 2 2
PNMT WILD-TYPE 18 96 93
'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 0.87

Table S4404.  Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PNMT MUTATED 0 0 3 1 0
PNMT WILD-TYPE 17 34 87 68 1
'IGSF21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S4405.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IGSF21 MUTATED 0 0 3
IGSF21 WILD-TYPE 80 55 149
'IGSF21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4406.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IGSF21 MUTATED 2 0 1
IGSF21 WILD-TYPE 119 37 85
'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.38

Table S4407.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IGSF21 MUTATED 2 1 0
IGSF21 WILD-TYPE 162 12 80
'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4408.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IGSF21 MUTATED 0 2 0 1
IGSF21 WILD-TYPE 49 100 4 101
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S4409.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IGSF21 MUTATED 0 3 0
IGSF21 WILD-TYPE 26 176 84
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.8

Table S4410.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IGSF21 MUTATED 0 1 2 0 0
IGSF21 WILD-TYPE 69 57 110 1 49
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S4411.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IGSF21 MUTATED 0 3 0
IGSF21 WILD-TYPE 18 95 95
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S4412.  Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IGSF21 MUTATED 0 0 3 0 0
IGSF21 WILD-TYPE 17 34 87 69 1
'TAS2R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S4413.  Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TAS2R10 MUTATED 0 1 2
TAS2R10 WILD-TYPE 80 54 150
'TAS2R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S4414.  Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TAS2R10 MUTATED 3 0 0
TAS2R10 WILD-TYPE 118 37 86
'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.74

Table S4415.  Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TAS2R10 MUTATED 3 0 0
TAS2R10 WILD-TYPE 161 13 80
'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S4416.  Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TAS2R10 MUTATED 0 3 0 0
TAS2R10 WILD-TYPE 49 99 4 102
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S4417.  Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TAS2R10 MUTATED 0 3 0
TAS2R10 WILD-TYPE 26 176 84
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S4418.  Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TAS2R10 MUTATED 0 2 1 0 0
TAS2R10 WILD-TYPE 69 56 111 1 49
'TNKS1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.016

Table S4419.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TNKS1BP1 MUTATED 0 1 17
TNKS1BP1 WILD-TYPE 80 54 135

Figure S1099.  Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 0.27

Table S4420.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TNKS1BP1 MUTATED 11 0 4
TNKS1BP1 WILD-TYPE 110 37 82
'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.38

Table S4421.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TNKS1BP1 MUTATED 13 1 2
TNKS1BP1 WILD-TYPE 151 12 78
'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.2

Table S4422.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TNKS1BP1 MUTATED 1 12 0 3
TNKS1BP1 WILD-TYPE 48 90 4 99

Figure S1100.  Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.29

Table S4423.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TNKS1BP1 MUTATED 1 16 2
TNKS1BP1 WILD-TYPE 25 163 82
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.2

Table S4424.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TNKS1BP1 MUTATED 3 8 8 0 0
TNKS1BP1 WILD-TYPE 66 50 104 1 49

Figure S1101.  Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S4425.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TNKS1BP1 MUTATED 1 11 2
TNKS1BP1 WILD-TYPE 17 87 93

Figure S1102.  Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S4426.  Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TNKS1BP1 MUTATED 1 3 9 1 0
TNKS1BP1 WILD-TYPE 16 31 81 68 1
'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S4427.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIRREL2 MUTATED 0 1 11
KIRREL2 WILD-TYPE 80 54 141

Figure S1103.  Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.29

Table S4428.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIRREL2 MUTATED 9 0 2
KIRREL2 WILD-TYPE 112 37 84
'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.84

Table S4429.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIRREL2 MUTATED 9 0 2
KIRREL2 WILD-TYPE 155 13 78
'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.19

Table S4430.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIRREL2 MUTATED 0 9 0 2
KIRREL2 WILD-TYPE 49 93 4 100

Figure S1104.  Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S4431.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIRREL2 MUTATED 0 11 1
KIRREL2 WILD-TYPE 26 168 83
'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.038

Table S4432.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIRREL2 MUTATED 0 8 2 0 2
KIRREL2 WILD-TYPE 69 50 110 1 47

Figure S1105.  Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S4433.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIRREL2 MUTATED 0 9 1
KIRREL2 WILD-TYPE 18 89 94

Figure S1106.  Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.19

Table S4434.  Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIRREL2 MUTATED 0 4 6 0 0
KIRREL2 WILD-TYPE 17 30 84 69 1

Figure S1107.  Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00097 (Fisher's exact test), Q value = 0.025

Table S4435.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NID2 MUTATED 0 1 16
NID2 WILD-TYPE 80 54 136

Figure S1108.  Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S4436.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NID2 MUTATED 8 1 3
NID2 WILD-TYPE 113 36 83
'NID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4437.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NID2 MUTATED 10 0 4
NID2 WILD-TYPE 154 13 76
'NID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S4438.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NID2 MUTATED 0 9 0 5
NID2 WILD-TYPE 49 93 4 97
'NID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.26

Table S4439.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NID2 MUTATED 0 15 2
NID2 WILD-TYPE 26 164 82
'NID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0093

Table S4440.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NID2 MUTATED 0 11 5 0 1
NID2 WILD-TYPE 69 47 107 1 48

Figure S1109.  Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S4441.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NID2 MUTATED 0 8 2
NID2 WILD-TYPE 18 90 93
'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.69

Table S4442.  Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NID2 MUTATED 0 3 5 2 0
NID2 WILD-TYPE 17 31 85 67 1
'FOXQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S4443.  Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FOXQ1 MUTATED 0 0 3
FOXQ1 WILD-TYPE 80 55 149
'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.74

Table S4444.  Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FOXQ1 MUTATED 3 0 0
FOXQ1 WILD-TYPE 161 13 80
'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S4445.  Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FOXQ1 MUTATED 0 3 0 0
FOXQ1 WILD-TYPE 49 99 4 102
'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.78

Table S4446.  Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FOXQ1 MUTATED 0 3 0
FOXQ1 WILD-TYPE 26 176 84
'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4447.  Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FOXQ1 MUTATED 1 1 1 0 0
FOXQ1 WILD-TYPE 68 57 111 1 49
'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.64

Table S4448.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SMAD2 MUTATED 1 1 7
SMAD2 WILD-TYPE 79 54 145
'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.22

Table S4449.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SMAD2 MUTATED 6 0 0
SMAD2 WILD-TYPE 115 37 86
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S4450.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SMAD2 MUTATED 8 0 0
SMAD2 WILD-TYPE 156 13 80
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.26

Table S4451.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SMAD2 MUTATED 0 7 0 1
SMAD2 WILD-TYPE 49 95 4 101
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.27

Table S4452.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SMAD2 MUTATED 0 9 0
SMAD2 WILD-TYPE 26 170 84
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.27

Table S4453.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SMAD2 MUTATED 0 4 5 0 0
SMAD2 WILD-TYPE 69 54 107 1 49
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S4454.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SMAD2 MUTATED 0 5 0
SMAD2 WILD-TYPE 18 93 95
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S4455.  Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SMAD2 MUTATED 0 1 4 0 0
SMAD2 WILD-TYPE 17 33 86 69 1
'LARP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.27

Table S4456.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LARP1 MUTATED 1 0 9
LARP1 WILD-TYPE 79 55 143
'LARP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S4457.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LARP1 MUTATED 7 0 0
LARP1 WILD-TYPE 114 37 86

Figure S1110.  Get High-res Image Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S4458.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LARP1 MUTATED 9 0 1
LARP1 WILD-TYPE 155 13 79
'LARP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S4459.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LARP1 MUTATED 1 7 0 2
LARP1 WILD-TYPE 48 95 4 100
'LARP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.18

Table S4460.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LARP1 MUTATED 0 10 0
LARP1 WILD-TYPE 26 169 84

Figure S1111.  Get High-res Image Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'LARP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S4461.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LARP1 MUTATED 1 3 6 0 0
LARP1 WILD-TYPE 68 55 106 1 49
'LARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.19

Table S4462.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LARP1 MUTATED 1 6 0
LARP1 WILD-TYPE 17 92 95

Figure S1112.  Get High-res Image Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.32

Table S4463.  Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LARP1 MUTATED 0 1 6 0 0
LARP1 WILD-TYPE 17 33 84 69 1
'FAM186B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.11

Table S4464.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM186B MUTATED 0 0 10
FAM186B WILD-TYPE 80 55 142

Figure S1113.  Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM186B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.23

Table S4465.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAM186B MUTATED 6 0 0
FAM186B WILD-TYPE 115 37 86
'FAM186B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.91

Table S4466.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM186B MUTATED 7 0 2
FAM186B WILD-TYPE 157 13 78
'FAM186B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S4467.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM186B MUTATED 0 6 0 3
FAM186B WILD-TYPE 49 96 4 99
'FAM186B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.18

Table S4468.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM186B MUTATED 0 10 0
FAM186B WILD-TYPE 26 169 84

Figure S1114.  Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S4469.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM186B MUTATED 0 9 1 0 0
FAM186B WILD-TYPE 69 49 111 1 49

Figure S1115.  Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.2

Table S4470.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FAM186B MUTATED 0 6 0
FAM186B WILD-TYPE 18 92 95

Figure S1116.  Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.18

Table S4471.  Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FAM186B MUTATED 0 4 2 0 0
FAM186B WILD-TYPE 17 30 88 69 1

Figure S1117.  Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TBC1D23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S4472.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TBC1D23 MUTATED 0 0 4
TBC1D23 WILD-TYPE 80 55 148
'TBC1D23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S4473.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TBC1D23 MUTATED 2 1 0
TBC1D23 WILD-TYPE 119 36 86
'TBC1D23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.74

Table S4474.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TBC1D23 MUTATED 3 0 0
TBC1D23 WILD-TYPE 161 13 80
'TBC1D23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.47

Table S4475.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TBC1D23 MUTATED 0 3 0 0
TBC1D23 WILD-TYPE 49 99 4 102
'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4476.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TBC1D23 MUTATED 0 3 1
TBC1D23 WILD-TYPE 26 176 83
'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.17

Table S4477.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TBC1D23 MUTATED 0 3 0 0 1
TBC1D23 WILD-TYPE 69 55 112 1 48

Figure S1118.  Get High-res Image Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4478.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TBC1D23 MUTATED 0 2 1
TBC1D23 WILD-TYPE 18 96 94
'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0679 (Fisher's exact test), Q value = 0.25

Table S4479.  Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TBC1D23 MUTATED 0 2 0 1 0
TBC1D23 WILD-TYPE 17 32 90 68 1
'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.23

Table S4480.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
UGP2 MUTATED 0 0 7
UGP2 WILD-TYPE 80 55 145
'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.56

Table S4481.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
UGP2 MUTATED 5 0 1
UGP2 WILD-TYPE 116 37 85
'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S4482.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
UGP2 MUTATED 4 1 0
UGP2 WILD-TYPE 160 12 80
'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S4483.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
UGP2 MUTATED 0 4 0 1
UGP2 WILD-TYPE 49 98 4 101
'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S4484.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UGP2 MUTATED 0 6 1
UGP2 WILD-TYPE 26 173 83
'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.27

Table S4485.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UGP2 MUTATED 0 4 3 0 0
UGP2 WILD-TYPE 69 54 109 1 49
'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.91

Table S4486.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
UGP2 MUTATED 0 4 2
UGP2 WILD-TYPE 18 94 93
'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.9

Table S4487.  Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
UGP2 MUTATED 0 1 4 1 0
UGP2 WILD-TYPE 17 33 86 68 1
'FBN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S4488.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FBN3 MUTATED 4 4 20
FBN3 WILD-TYPE 76 51 132
'FBN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S4489.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FBN3 MUTATED 15 2 4
FBN3 WILD-TYPE 106 35 82
'FBN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.051

Table S4490.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FBN3 MUTATED 25 0 2
FBN3 WILD-TYPE 139 13 78

Figure S1119.  Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.027

Table S4491.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FBN3 MUTATED 4 20 0 3
FBN3 WILD-TYPE 45 82 4 99

Figure S1120.  Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.2

Table S4492.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FBN3 MUTATED 2 23 3
FBN3 WILD-TYPE 24 156 81

Figure S1121.  Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.016

Table S4493.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FBN3 MUTATED 2 14 11 0 1
FBN3 WILD-TYPE 67 44 101 1 48

Figure S1122.  Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.39

Table S4494.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FBN3 MUTATED 2 12 5
FBN3 WILD-TYPE 16 86 90
'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.23

Table S4495.  Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FBN3 MUTATED 0 5 12 2 0
FBN3 WILD-TYPE 17 29 78 67 1
'IK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S4496.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IK MUTATED 1 0 5
IK WILD-TYPE 79 55 147
'IK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.76

Table S4497.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IK MUTATED 2 1 1
IK WILD-TYPE 119 36 85
'IK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.86

Table S4498.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IK MUTATED 5 0 1
IK WILD-TYPE 159 13 79
'IK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.65

Table S4499.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IK MUTATED 1 4 0 1
IK WILD-TYPE 48 98 4 101
'IK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S4500.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IK MUTATED 1 4 1
IK WILD-TYPE 25 175 83
'IK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.2

Table S4501.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IK MUTATED 3 3 0 0 0
IK WILD-TYPE 66 55 112 1 49

Figure S1123.  Get High-res Image Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4502.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IK MUTATED 0 2 1
IK WILD-TYPE 18 96 94
'IK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4503.  Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IK MUTATED 0 0 2 1 0
IK WILD-TYPE 17 34 88 68 1
'FAHD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S4504.  Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAHD2B MUTATED 0 0 5
FAHD2B WILD-TYPE 80 55 147
'FAHD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.57

Table S4505.  Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FAHD2B MUTATED 3 0 0
FAHD2B WILD-TYPE 118 37 86
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4506.  Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAHD2B MUTATED 4 0 1
FAHD2B WILD-TYPE 160 13 79
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S4507.  Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAHD2B MUTATED 0 4 0 1
FAHD2B WILD-TYPE 49 98 4 101
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S4508.  Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAHD2B MUTATED 0 5 0
FAHD2B WILD-TYPE 26 174 84
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.4

Table S4509.  Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAHD2B MUTATED 1 3 1 0 0
FAHD2B WILD-TYPE 68 55 111 1 49
'GPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.81

Table S4510.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPC4 MUTATED 1 2 5
GPC4 WILD-TYPE 79 53 147
'GPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.23

Table S4511.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPC4 MUTATED 7 1 0
GPC4 WILD-TYPE 114 36 86
'GPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.27

Table S4512.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPC4 MUTATED 9 0 0
GPC4 WILD-TYPE 155 13 80
'GPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.042

Table S4513.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPC4 MUTATED 0 9 0 0
GPC4 WILD-TYPE 49 93 4 102

Figure S1124.  Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.27

Table S4514.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPC4 MUTATED 0 9 0
GPC4 WILD-TYPE 26 170 84
'GPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.21

Table S4515.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPC4 MUTATED 0 5 4 0 0
GPC4 WILD-TYPE 69 53 108 1 49

Figure S1125.  Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.093

Table S4516.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPC4 MUTATED 0 8 0
GPC4 WILD-TYPE 18 90 95

Figure S1126.  Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.22

Table S4517.  Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPC4 MUTATED 0 4 4 0 0
GPC4 WILD-TYPE 17 30 86 69 1
'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S4518.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CLGN MUTATED 0 1 7
CLGN WILD-TYPE 80 54 145
'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S4519.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CLGN MUTATED 4 0 1
CLGN WILD-TYPE 117 37 85
'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.88

Table S4520.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CLGN MUTATED 4 0 3
CLGN WILD-TYPE 160 13 77
'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.72

Table S4521.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CLGN MUTATED 0 4 0 3
CLGN WILD-TYPE 49 98 4 99
'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S4522.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CLGN MUTATED 0 7 1
CLGN WILD-TYPE 26 172 83
'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S4523.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CLGN MUTATED 0 4 3 0 1
CLGN WILD-TYPE 69 54 109 1 48
'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S4524.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CLGN MUTATED 0 4 1
CLGN WILD-TYPE 18 94 94
'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S4525.  Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CLGN MUTATED 0 2 2 1 0
CLGN WILD-TYPE 17 32 88 68 1
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S4526.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NF1 MUTATED 4 1 20
NF1 WILD-TYPE 76 54 132

Figure S1127.  Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.24

Table S4527.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NF1 MUTATED 12 0 4
NF1 WILD-TYPE 109 37 82
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S4528.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NF1 MUTATED 17 0 5
NF1 WILD-TYPE 147 13 75
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.19

Table S4529.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NF1 MUTATED 1 15 0 6
NF1 WILD-TYPE 48 87 4 96

Figure S1128.  Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.39

Table S4530.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NF1 MUTATED 1 20 4
NF1 WILD-TYPE 25 159 80
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00473 (Fisher's exact test), Q value = 0.067

Table S4531.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NF1 MUTATED 1 9 14 0 1
NF1 WILD-TYPE 68 49 98 1 48

Figure S1129.  Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S4532.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NF1 MUTATED 1 9 3
NF1 WILD-TYPE 17 89 92
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S4533.  Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NF1 MUTATED 0 2 9 2 0
NF1 WILD-TYPE 17 32 81 67 1
'LCE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S4534.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LCE1A MUTATED 0 2 1
LCE1A WILD-TYPE 80 53 151
'LCE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4535.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LCE1A MUTATED 2 0 1
LCE1A WILD-TYPE 119 37 85
'LCE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4536.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LCE1A MUTATED 2 0 1
LCE1A WILD-TYPE 162 13 79
'LCE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.75

Table S4537.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LCE1A MUTATED 1 1 0 1
LCE1A WILD-TYPE 48 101 4 101
'LCE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S4538.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LCE1A MUTATED 1 1 1
LCE1A WILD-TYPE 25 178 83
'LCE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 0.18

Table S4539.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LCE1A MUTATED 3 0 0 0 0
LCE1A WILD-TYPE 66 58 112 1 49

Figure S1130.  Get High-res Image Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S4540.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LCE1A MUTATED 1 1 1
LCE1A WILD-TYPE 17 97 94
'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S4541.  Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LCE1A MUTATED 1 1 0 1 0
LCE1A WILD-TYPE 16 33 90 68 1
'NBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.5

Table S4542.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NBN MUTATED 2 1 10
NBN WILD-TYPE 78 54 142
'NBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S4543.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NBN MUTATED 6 2 1
NBN WILD-TYPE 115 35 85
'NBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S4544.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NBN MUTATED 10 0 2
NBN WILD-TYPE 154 13 78
'NBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S4545.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NBN MUTATED 2 7 0 3
NBN WILD-TYPE 47 95 4 99
'NBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 0.98

Table S4546.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NBN MUTATED 1 9 3
NBN WILD-TYPE 25 170 81
'NBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S4547.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NBN MUTATED 2 3 7 0 1
NBN WILD-TYPE 67 55 105 1 48
'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4548.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NBN MUTATED 2 5 2
NBN WILD-TYPE 16 93 93
'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S4549.  Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NBN MUTATED 1 3 3 2 0
NBN WILD-TYPE 16 31 87 67 1
'PRKAR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S4550.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRKAR1B MUTATED 0 0 5
PRKAR1B WILD-TYPE 80 55 147
'PRKAR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S4551.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRKAR1B MUTATED 4 0 0
PRKAR1B WILD-TYPE 117 37 86
'PRKAR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S4552.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRKAR1B MUTATED 5 0 0
PRKAR1B WILD-TYPE 159 13 80
'PRKAR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S4553.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRKAR1B MUTATED 0 4 0 1
PRKAR1B WILD-TYPE 49 98 4 101
'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S4554.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRKAR1B MUTATED 0 5 0
PRKAR1B WILD-TYPE 26 174 84
'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S4555.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRKAR1B MUTATED 0 2 3 0 0
PRKAR1B WILD-TYPE 69 56 109 1 49
'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S4556.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRKAR1B MUTATED 0 3 0
PRKAR1B WILD-TYPE 18 95 95
'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.69

Table S4557.  Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRKAR1B MUTATED 0 1 2 0 0
PRKAR1B WILD-TYPE 17 33 88 69 1
'PPP1R13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S4558.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PPP1R13B MUTATED 0 2 8
PPP1R13B WILD-TYPE 80 53 144
'PPP1R13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.85

Table S4559.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PPP1R13B MUTATED 3 0 3
PPP1R13B WILD-TYPE 118 37 83
'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S4560.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PPP1R13B MUTATED 6 1 3
PPP1R13B WILD-TYPE 158 12 77
'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S4561.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PPP1R13B MUTATED 1 4 0 5
PPP1R13B WILD-TYPE 48 98 4 97
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S4562.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PPP1R13B MUTATED 0 9 1
PPP1R13B WILD-TYPE 26 170 83
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.3

Table S4563.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PPP1R13B MUTATED 1 1 8 0 0
PPP1R13B WILD-TYPE 68 57 104 1 49
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.64

Table S4564.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PPP1R13B MUTATED 0 4 1
PPP1R13B WILD-TYPE 18 94 94
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S4565.  Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PPP1R13B MUTATED 0 0 4 1 0
PPP1R13B WILD-TYPE 17 34 86 68 1
'PHACTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.24

Table S4566.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PHACTR1 MUTATED 0 1 8
PHACTR1 WILD-TYPE 80 54 144
'PHACTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S4567.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PHACTR1 MUTATED 4 0 1
PHACTR1 WILD-TYPE 117 37 85
'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4568.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PHACTR1 MUTATED 5 0 2
PHACTR1 WILD-TYPE 159 13 78
'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S4569.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PHACTR1 MUTATED 0 5 0 2
PHACTR1 WILD-TYPE 49 97 4 100
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.87

Table S4570.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PHACTR1 MUTATED 0 7 2
PHACTR1 WILD-TYPE 26 172 82
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S4571.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PHACTR1 MUTATED 0 4 4 0 1
PHACTR1 WILD-TYPE 69 54 108 1 48
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4572.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PHACTR1 MUTATED 0 3 2
PHACTR1 WILD-TYPE 18 95 93
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S4573.  Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PHACTR1 MUTATED 0 2 1 2 0
PHACTR1 WILD-TYPE 17 32 89 67 1
'DHRS9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S4574.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DHRS9 MUTATED 2 1 6
DHRS9 WILD-TYPE 78 54 146
'DHRS9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S4575.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DHRS9 MUTATED 5 0 0
DHRS9 WILD-TYPE 116 37 86
'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S4576.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DHRS9 MUTATED 8 0 1
DHRS9 WILD-TYPE 156 13 79
'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S4577.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DHRS9 MUTATED 0 7 0 2
DHRS9 WILD-TYPE 49 95 4 100
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.3

Table S4578.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DHRS9 MUTATED 1 8 0
DHRS9 WILD-TYPE 25 171 84
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 0.26

Table S4579.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DHRS9 MUTATED 0 4 5 0 0
DHRS9 WILD-TYPE 69 54 107 1 49
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S4580.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DHRS9 MUTATED 0 3 1
DHRS9 WILD-TYPE 18 95 94
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4581.  Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DHRS9 MUTATED 0 1 3 0 0
DHRS9 WILD-TYPE 17 33 87 69 1
'PRICKLE4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S4582.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PRICKLE4 MUTATED 0 0 6
PRICKLE4 WILD-TYPE 80 55 146
'PRICKLE4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.7

Table S4583.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PRICKLE4 MUTATED 1 1 1
PRICKLE4 WILD-TYPE 120 36 85
'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S4584.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PRICKLE4 MUTATED 3 1 2
PRICKLE4 WILD-TYPE 161 12 78
'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.8

Table S4585.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PRICKLE4 MUTATED 0 3 0 3
PRICKLE4 WILD-TYPE 49 99 4 99
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S4586.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PRICKLE4 MUTATED 0 6 0
PRICKLE4 WILD-TYPE 26 173 84
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S4587.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PRICKLE4 MUTATED 0 2 4 0 0
PRICKLE4 WILD-TYPE 69 56 108 1 49
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S4588.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PRICKLE4 MUTATED 0 3 0
PRICKLE4 WILD-TYPE 18 95 95
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.69

Table S4589.  Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PRICKLE4 MUTATED 0 1 2 0 0
PRICKLE4 WILD-TYPE 17 33 88 69 1
'TRIM46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.16

Table S4590.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TRIM46 MUTATED 1 0 11
TRIM46 WILD-TYPE 79 55 141

Figure S1131.  Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRIM46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S4591.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TRIM46 MUTATED 8 0 0
TRIM46 WILD-TYPE 113 37 86

Figure S1132.  Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4592.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TRIM46 MUTATED 10 0 1
TRIM46 WILD-TYPE 154 13 79
'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00841 (Fisher's exact test), Q value = 0.091

Table S4593.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TRIM46 MUTATED 0 10 0 1
TRIM46 WILD-TYPE 49 92 4 101

Figure S1133.  Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.14

Table S4594.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TRIM46 MUTATED 0 12 0
TRIM46 WILD-TYPE 26 167 84

Figure S1134.  Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00415 (Fisher's exact test), Q value = 0.062

Table S4595.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TRIM46 MUTATED 1 8 3 0 0
TRIM46 WILD-TYPE 68 50 109 1 49

Figure S1135.  Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.27

Table S4596.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TRIM46 MUTATED 0 7 1
TRIM46 WILD-TYPE 18 91 94
'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.3

Table S4597.  Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TRIM46 MUTATED 0 2 6 0 0
TRIM46 WILD-TYPE 17 32 84 69 1
'FOXJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S4598.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FOXJ1 MUTATED 0 0 5
FOXJ1 WILD-TYPE 80 55 147
'FOXJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.42

Table S4599.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FOXJ1 MUTATED 4 0 0
FOXJ1 WILD-TYPE 117 37 86
'FOXJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S4600.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FOXJ1 MUTATED 5 0 0
FOXJ1 WILD-TYPE 159 13 80
'FOXJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.24

Table S4601.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FOXJ1 MUTATED 0 5 0 0
FOXJ1 WILD-TYPE 49 97 4 102
'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S4602.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FOXJ1 MUTATED 0 5 0
FOXJ1 WILD-TYPE 26 174 84
'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.18

Table S4603.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FOXJ1 MUTATED 0 4 1 0 0
FOXJ1 WILD-TYPE 69 54 111 1 49

Figure S1136.  Get High-res Image Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S4604.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FOXJ1 MUTATED 0 4 0
FOXJ1 WILD-TYPE 18 94 95
'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.21

Table S4605.  Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FOXJ1 MUTATED 0 3 1 0 0
FOXJ1 WILD-TYPE 17 31 89 69 1

Figure S1137.  Get High-res Image Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S4606.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DCHS1 MUTATED 5 3 21
DCHS1 WILD-TYPE 75 52 131
'DCHS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.036

Table S4607.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DCHS1 MUTATED 20 3 2
DCHS1 WILD-TYPE 101 34 84

Figure S1138.  Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DCHS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.32

Table S4608.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DCHS1 MUTATED 20 0 4
DCHS1 WILD-TYPE 144 13 76
'DCHS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S4609.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DCHS1 MUTATED 1 17 0 6
DCHS1 WILD-TYPE 48 85 4 96

Figure S1139.  Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.17

Table S4610.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DCHS1 MUTATED 2 24 3
DCHS1 WILD-TYPE 24 155 81

Figure S1140.  Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.014

Table S4611.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DCHS1 MUTATED 5 16 6 0 2
DCHS1 WILD-TYPE 64 42 106 1 47

Figure S1141.  Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00798 (Fisher's exact test), Q value = 0.088

Table S4612.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DCHS1 MUTATED 0 16 4
DCHS1 WILD-TYPE 18 82 91

Figure S1142.  Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00764 (Fisher's exact test), Q value = 0.087

Table S4613.  Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DCHS1 MUTATED 0 9 8 3 0
DCHS1 WILD-TYPE 17 25 82 66 1

Figure S1143.  Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.2

Table S4614.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HLA-F MUTATED 1 0 10
HLA-F WILD-TYPE 79 55 142

Figure S1144.  Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S4615.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HLA-F MUTATED 6 2 1
HLA-F WILD-TYPE 115 35 85
'HLA-F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S4616.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HLA-F MUTATED 8 0 2
HLA-F WILD-TYPE 156 13 78
'HLA-F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 0.26

Table S4617.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HLA-F MUTATED 0 8 0 2
HLA-F WILD-TYPE 49 94 4 100
'HLA-F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S4618.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HLA-F MUTATED 0 11 0
HLA-F WILD-TYPE 26 168 84

Figure S1145.  Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HLA-F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S4619.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HLA-F MUTATED 1 4 6 0 0
HLA-F WILD-TYPE 68 54 106 1 49
'HLA-F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00398 (Fisher's exact test), Q value = 0.06

Table S4620.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HLA-F MUTATED 0 9 0
HLA-F WILD-TYPE 18 89 95

Figure S1146.  Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HLA-F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00263 (Fisher's exact test), Q value = 0.049

Table S4621.  Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HLA-F MUTATED 0 6 3 0 0
HLA-F WILD-TYPE 17 28 87 69 1

Figure S1147.  Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNT9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S4622.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WNT9A MUTATED 2 0 6
WNT9A WILD-TYPE 78 55 146
'WNT9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.26

Table S4623.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WNT9A MUTATED 6 1 0
WNT9A WILD-TYPE 115 36 86
'WNT9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4624.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WNT9A MUTATED 6 0 2
WNT9A WILD-TYPE 158 13 78
'WNT9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.75

Table S4625.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WNT9A MUTATED 1 5 0 2
WNT9A WILD-TYPE 48 97 4 100
'WNT9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4626.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WNT9A MUTATED 0 6 2
WNT9A WILD-TYPE 26 173 82
'WNT9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S4627.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WNT9A MUTATED 1 3 3 0 1
WNT9A WILD-TYPE 68 55 109 1 48
'WNT9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.91

Table S4628.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WNT9A MUTATED 0 4 2
WNT9A WILD-TYPE 18 94 93
'WNT9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.5

Table S4629.  Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WNT9A MUTATED 1 2 2 1 0
WNT9A WILD-TYPE 16 32 88 68 1
'PPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.17

Table S4630.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PPL MUTATED 1 1 13
PPL WILD-TYPE 79 54 139

Figure S1148.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.26

Table S4631.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PPL MUTATED 11 0 3
PPL WILD-TYPE 110 37 83
'PPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.21

Table S4632.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PPL MUTATED 14 1 1
PPL WILD-TYPE 150 12 79

Figure S1149.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'PPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.14

Table S4633.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PPL MUTATED 0 12 0 4
PPL WILD-TYPE 49 90 4 98

Figure S1150.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.051

Table S4634.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PPL MUTATED 0 16 0
PPL WILD-TYPE 26 163 84

Figure S1151.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.1

Table S4635.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PPL MUTATED 1 8 7 0 0
PPL WILD-TYPE 68 50 105 1 49

Figure S1152.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.052

Table S4636.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PPL MUTATED 0 12 1
PPL WILD-TYPE 18 86 94

Figure S1153.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S4637.  Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PPL MUTATED 0 3 10 0 0
PPL WILD-TYPE 17 31 80 69 1

Figure S1154.  Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.12

Table S4638.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PTOV1 MUTATED 0 0 9
PTOV1 WILD-TYPE 80 55 143

Figure S1155.  Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTOV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.6

Table S4639.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PTOV1 MUTATED 6 0 2
PTOV1 WILD-TYPE 115 37 84
'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S4640.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PTOV1 MUTATED 8 0 1
PTOV1 WILD-TYPE 156 13 79
'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.17

Table S4641.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PTOV1 MUTATED 0 8 0 1
PTOV1 WILD-TYPE 49 94 4 101

Figure S1156.  Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S4642.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PTOV1 MUTATED 0 8 1
PTOV1 WILD-TYPE 26 171 83
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.26

Table S4643.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PTOV1 MUTATED 0 5 3 0 1
PTOV1 WILD-TYPE 69 53 109 1 48
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S4644.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PTOV1 MUTATED 0 5 1
PTOV1 WILD-TYPE 18 93 94
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S4645.  Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PTOV1 MUTATED 0 2 3 1 0
PTOV1 WILD-TYPE 17 32 87 68 1
'PCCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S4646.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PCCA MUTATED 0 1 7
PCCA WILD-TYPE 80 54 145
'PCCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S4647.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PCCA MUTATED 5 0 1
PCCA WILD-TYPE 116 37 85
'PCCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.86

Table S4648.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PCCA MUTATED 5 0 1
PCCA WILD-TYPE 159 13 79
'PCCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4649.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PCCA MUTATED 0 5 0 1
PCCA WILD-TYPE 49 97 4 101
'PCCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.28

Table S4650.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PCCA MUTATED 0 8 0
PCCA WILD-TYPE 26 171 84
'PCCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.19

Table S4651.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PCCA MUTATED 0 5 3 0 0
PCCA WILD-TYPE 69 53 109 1 49

Figure S1157.  Get High-res Image Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.2

Table S4652.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PCCA MUTATED 0 6 0
PCCA WILD-TYPE 18 92 95

Figure S1158.  Get High-res Image Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.45

Table S4653.  Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PCCA MUTATED 0 1 5 0 0
PCCA WILD-TYPE 17 33 85 69 1
'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.26

Table S4654.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TAF6 MUTATED 2 0 10
TAF6 WILD-TYPE 78 55 142
'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.7

Table S4655.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TAF6 MUTATED 7 1 2
TAF6 WILD-TYPE 114 36 84
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S4656.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TAF6 MUTATED 10 0 2
TAF6 WILD-TYPE 154 13 78
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S4657.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TAF6 MUTATED 2 7 0 3
TAF6 WILD-TYPE 47 95 4 99
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.19

Table S4658.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TAF6 MUTATED 1 11 0
TAF6 WILD-TYPE 25 168 84

Figure S1159.  Get High-res Image Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S4659.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TAF6 MUTATED 2 6 3 0 1
TAF6 WILD-TYPE 67 52 109 1 48
'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.55

Table S4660.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TAF6 MUTATED 1 6 2
TAF6 WILD-TYPE 17 92 93
'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S4661.  Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TAF6 MUTATED 1 1 6 1 0
TAF6 WILD-TYPE 16 33 84 68 1
'ITGA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.023

Table S4662.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ITGA7 MUTATED 0 0 14
ITGA7 WILD-TYPE 80 55 138

Figure S1160.  Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.29

Table S4663.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ITGA7 MUTATED 9 0 2
ITGA7 WILD-TYPE 112 37 84
'ITGA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S4664.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ITGA7 MUTATED 12 0 2
ITGA7 WILD-TYPE 152 13 78
'ITGA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00481 (Fisher's exact test), Q value = 0.067

Table S4665.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ITGA7 MUTATED 0 12 0 2
ITGA7 WILD-TYPE 49 90 4 100

Figure S1161.  Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00624 (Fisher's exact test), Q value = 0.078

Table S4666.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ITGA7 MUTATED 0 14 0
ITGA7 WILD-TYPE 26 165 84

Figure S1162.  Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.1

Table S4667.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ITGA7 MUTATED 0 6 8 0 0
ITGA7 WILD-TYPE 69 52 104 1 49

Figure S1163.  Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S4668.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ITGA7 MUTATED 0 10 1
ITGA7 WILD-TYPE 18 88 94

Figure S1164.  Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.19

Table S4669.  Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ITGA7 MUTATED 0 3 8 0 0
ITGA7 WILD-TYPE 17 31 82 69 1

Figure S1165.  Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4670.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C11ORF63 MUTATED 4 2 8
C11ORF63 WILD-TYPE 76 53 144
'C11ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0032 (Fisher's exact test), Q value = 0.054

Table S4671.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C11ORF63 MUTATED 12 1 0
C11ORF63 WILD-TYPE 109 36 86

Figure S1166.  Get High-res Image Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.48

Table S4672.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C11ORF63 MUTATED 12 0 2
C11ORF63 WILD-TYPE 152 13 78
'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S4673.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C11ORF63 MUTATED 2 8 0 4
C11ORF63 WILD-TYPE 47 94 4 98
'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.19

Table S4674.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C11ORF63 MUTATED 0 14 1
C11ORF63 WILD-TYPE 26 165 83

Figure S1167.  Get High-res Image Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.23

Table S4675.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C11ORF63 MUTATED 2 7 6 0 0
C11ORF63 WILD-TYPE 67 51 106 1 49
'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.29

Table S4676.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C11ORF63 MUTATED 1 9 2
C11ORF63 WILD-TYPE 17 89 93
'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S4677.  Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C11ORF63 MUTATED 1 5 6 0 0
C11ORF63 WILD-TYPE 16 29 84 69 1

Figure S1168.  Get High-res Image Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ENOSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S4678.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ENOSF1 MUTATED 1 0 6
ENOSF1 WILD-TYPE 79 55 146
'ENOSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S4679.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ENOSF1 MUTATED 4 1 1
ENOSF1 WILD-TYPE 117 36 85
'ENOSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 0.85

Table S4680.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ENOSF1 MUTATED 3 0 2
ENOSF1 WILD-TYPE 161 13 78
'ENOSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 0.94

Table S4681.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ENOSF1 MUTATED 0 3 0 2
ENOSF1 WILD-TYPE 49 99 4 100
'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S4682.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ENOSF1 MUTATED 0 6 1
ENOSF1 WILD-TYPE 26 173 83
'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S4683.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ENOSF1 MUTATED 2 3 2 0 0
ENOSF1 WILD-TYPE 67 55 110 1 49
'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.49

Table S4684.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ENOSF1 MUTATED 1 3 1
ENOSF1 WILD-TYPE 17 95 94
'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.98

Table S4685.  Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ENOSF1 MUTATED 0 1 3 1 0
ENOSF1 WILD-TYPE 17 33 87 68 1
'SLC38A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S4686.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC38A6 MUTATED 1 1 6
SLC38A6 WILD-TYPE 79 54 146
'SLC38A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.3

Table S4687.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC38A6 MUTATED 7 0 1
SLC38A6 WILD-TYPE 114 37 85
'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S4688.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC38A6 MUTATED 6 0 1
SLC38A6 WILD-TYPE 158 13 79
'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S4689.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC38A6 MUTATED 0 6 0 1
SLC38A6 WILD-TYPE 49 96 4 101
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S4690.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC38A6 MUTATED 0 7 1
SLC38A6 WILD-TYPE 26 172 83
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.085 (Fisher's exact test), Q value = 0.27

Table S4691.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC38A6 MUTATED 0 4 4 0 0
SLC38A6 WILD-TYPE 69 54 108 1 49
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.27

Table S4692.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC38A6 MUTATED 0 7 1
SLC38A6 WILD-TYPE 18 91 94
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.56

Table S4693.  Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC38A6 MUTATED 0 1 6 1 0
SLC38A6 WILD-TYPE 17 33 84 68 1
'KCNC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S4694.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KCNC1 MUTATED 0 0 6
KCNC1 WILD-TYPE 80 55 146
'KCNC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S4695.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KCNC1 MUTATED 7 0 0
KCNC1 WILD-TYPE 114 37 86

Figure S1169.  Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S4696.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KCNC1 MUTATED 6 0 0
KCNC1 WILD-TYPE 158 13 80
'KCNC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.17

Table S4697.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KCNC1 MUTATED 0 6 0 0
KCNC1 WILD-TYPE 49 96 4 102

Figure S1170.  Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S4698.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KCNC1 MUTATED 0 6 1
KCNC1 WILD-TYPE 26 173 83
'KCNC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.17

Table S4699.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KCNC1 MUTATED 0 5 2 0 0
KCNC1 WILD-TYPE 69 53 110 1 49

Figure S1171.  Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.91

Table S4700.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KCNC1 MUTATED 0 4 2
KCNC1 WILD-TYPE 18 94 93
'KCNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S4701.  Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KCNC1 MUTATED 0 3 2 1 0
KCNC1 WILD-TYPE 17 31 88 68 1
'AMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S4702.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AMPD3 MUTATED 1 2 16
AMPD3 WILD-TYPE 79 53 136

Figure S1172.  Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S4703.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AMPD3 MUTATED 13 0 2
AMPD3 WILD-TYPE 108 37 84

Figure S1173.  Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4704.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AMPD3 MUTATED 14 0 2
AMPD3 WILD-TYPE 150 13 78
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00652 (Fisher's exact test), Q value = 0.08

Table S4705.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AMPD3 MUTATED 0 13 0 3
AMPD3 WILD-TYPE 49 89 4 99

Figure S1174.  Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S4706.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AMPD3 MUTATED 0 16 3
AMPD3 WILD-TYPE 26 163 81
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00578 (Fisher's exact test), Q value = 0.075

Table S4707.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AMPD3 MUTATED 1 10 7 0 1
AMPD3 WILD-TYPE 68 48 105 1 48

Figure S1175.  Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.23

Table S4708.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AMPD3 MUTATED 0 11 3
AMPD3 WILD-TYPE 18 87 92
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S4709.  Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AMPD3 MUTATED 0 2 10 2 0
AMPD3 WILD-TYPE 17 32 80 67 1
'PPARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S4710.  Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PPARG MUTATED 0 0 4
PPARG WILD-TYPE 80 55 148
'PPARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4711.  Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PPARG MUTATED 3 0 1
PPARG WILD-TYPE 161 13 79
'PPARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S4712.  Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PPARG MUTATED 0 3 0 1
PPARG WILD-TYPE 49 99 4 101
'PPARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S4713.  Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PPARG MUTATED 0 4 0
PPARG WILD-TYPE 26 175 84
'PPARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S4714.  Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PPARG MUTATED 0 2 2 0 0
PPARG WILD-TYPE 69 56 110 1 49
'TRIM27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S4715.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TRIM27 MUTATED 0 0 5
TRIM27 WILD-TYPE 80 55 147
'TRIM27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.42

Table S4716.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TRIM27 MUTATED 4 0 0
TRIM27 WILD-TYPE 117 37 86
'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.55

Table S4717.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TRIM27 MUTATED 5 0 0
TRIM27 WILD-TYPE 159 13 80
'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.52

Table S4718.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TRIM27 MUTATED 0 4 0 1
TRIM27 WILD-TYPE 49 98 4 101
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S4719.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TRIM27 MUTATED 0 5 0
TRIM27 WILD-TYPE 26 174 84
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00215 (Fisher's exact test), Q value = 0.042

Table S4720.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TRIM27 MUTATED 0 5 0 0 0
TRIM27 WILD-TYPE 69 53 112 1 49

Figure S1176.  Get High-res Image Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4721.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TRIM27 MUTATED 0 2 2
TRIM27 WILD-TYPE 18 96 93
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4722.  Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TRIM27 MUTATED 0 2 2 0 0
TRIM27 WILD-TYPE 17 32 88 69 1
'MMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4723.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MMP3 MUTATED 0 1 7
MMP3 WILD-TYPE 80 54 145
'MMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S4724.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MMP3 MUTATED 5 0 2
MMP3 WILD-TYPE 116 37 84
'MMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S4725.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MMP3 MUTATED 5 1 2
MMP3 WILD-TYPE 159 12 78
'MMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S4726.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MMP3 MUTATED 0 5 0 3
MMP3 WILD-TYPE 49 97 4 99
'MMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.28

Table S4727.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MMP3 MUTATED 0 8 0
MMP3 WILD-TYPE 26 171 84
'MMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.27

Table S4728.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MMP3 MUTATED 0 4 4 0 0
MMP3 WILD-TYPE 69 54 108 1 49
'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S4729.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MMP3 MUTATED 0 7 0
MMP3 WILD-TYPE 18 91 95

Figure S1177.  Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S4730.  Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MMP3 MUTATED 0 2 5 0 0
MMP3 WILD-TYPE 17 32 85 69 1
'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S4731.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IDE MUTATED 1 0 8
IDE WILD-TYPE 79 55 144
'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S4732.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IDE MUTATED 5 1 1
IDE WILD-TYPE 116 36 85
'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S4733.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IDE MUTATED 7 0 0
IDE WILD-TYPE 157 13 80
'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S4734.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IDE MUTATED 0 7 0 0
IDE WILD-TYPE 49 95 4 102

Figure S1178.  Get High-res Image Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.64

Table S4735.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IDE MUTATED 1 7 1
IDE WILD-TYPE 25 172 83
'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.84

Table S4736.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IDE MUTATED 1 3 4 0 1
IDE WILD-TYPE 68 55 108 1 48
'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.48

Table S4737.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IDE MUTATED 1 4 1
IDE WILD-TYPE 17 94 94
'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S4738.  Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IDE MUTATED 0 2 3 1 0
IDE WILD-TYPE 17 32 87 68 1
'LARP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4739.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LARP7 MUTATED 1 0 2
LARP7 WILD-TYPE 79 55 150
'LARP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.48

Table S4740.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LARP7 MUTATED 2 1 0
LARP7 WILD-TYPE 119 36 86
'LARP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.74

Table S4741.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LARP7 MUTATED 3 0 0
LARP7 WILD-TYPE 161 13 80
'LARP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S4742.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LARP7 MUTATED 1 2 0 0
LARP7 WILD-TYPE 48 100 4 102
'LARP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S4743.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LARP7 MUTATED 1 2 0
LARP7 WILD-TYPE 25 177 84
'LARP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S4744.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LARP7 MUTATED 1 2 0 0 0
LARP7 WILD-TYPE 68 56 112 1 49
'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.32

Table S4745.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LARP7 MUTATED 1 2 0
LARP7 WILD-TYPE 17 96 95
'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S4746.  Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LARP7 MUTATED 1 1 1 0 0
LARP7 WILD-TYPE 16 33 89 69 1
'KIF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S4747.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIF6 MUTATED 1 0 5
KIF6 WILD-TYPE 79 55 147
'KIF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S4748.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIF6 MUTATED 4 0 1
KIF6 WILD-TYPE 117 37 85
'KIF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4749.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIF6 MUTATED 5 0 2
KIF6 WILD-TYPE 159 13 78
'KIF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4750.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIF6 MUTATED 1 3 0 3
KIF6 WILD-TYPE 48 99 4 99
'KIF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4751.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIF6 MUTATED 0 5 2
KIF6 WILD-TYPE 26 174 82
'KIF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.23

Table S4752.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIF6 MUTATED 0 3 1 0 3
KIF6 WILD-TYPE 69 55 111 1 46
'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4753.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIF6 MUTATED 0 2 2
KIF6 WILD-TYPE 18 96 93
'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S4754.  Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIF6 MUTATED 0 1 1 2 0
KIF6 WILD-TYPE 17 33 89 67 1
'PLEKHH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S4755.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PLEKHH3 MUTATED 0 0 9
PLEKHH3 WILD-TYPE 80 55 143

Figure S1179.  Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.79

Table S4756.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PLEKHH3 MUTATED 5 0 2
PLEKHH3 WILD-TYPE 116 37 84
'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.49

Table S4757.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PLEKHH3 MUTATED 5 1 1
PLEKHH3 WILD-TYPE 159 12 79
'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S4758.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PLEKHH3 MUTATED 0 5 0 2
PLEKHH3 WILD-TYPE 49 97 4 100
'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.27

Table S4759.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PLEKHH3 MUTATED 0 9 0
PLEKHH3 WILD-TYPE 26 170 84
'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 0.28

Table S4760.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PLEKHH3 MUTATED 1 5 3 0 0
PLEKHH3 WILD-TYPE 68 53 109 1 49
'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.19

Table S4761.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PLEKHH3 MUTATED 1 6 0
PLEKHH3 WILD-TYPE 17 92 95

Figure S1180.  Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.21

Table S4762.  Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PLEKHH3 MUTATED 0 4 3 0 0
PLEKHH3 WILD-TYPE 17 30 87 69 1

Figure S1181.  Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.25

Table S4763.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
WSB2 MUTATED 0 1 8
WSB2 WILD-TYPE 80 54 144
'WSB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S4764.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
WSB2 MUTATED 7 0 1
WSB2 WILD-TYPE 114 37 85
'WSB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.28

Table S4765.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
WSB2 MUTATED 7 1 0
WSB2 WILD-TYPE 157 12 80
'WSB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S4766.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
WSB2 MUTATED 0 6 0 2
WSB2 WILD-TYPE 49 96 4 100
'WSB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.27

Table S4767.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
WSB2 MUTATED 0 9 0
WSB2 WILD-TYPE 26 170 84
'WSB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.21

Table S4768.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
WSB2 MUTATED 0 5 4 0 0
WSB2 WILD-TYPE 69 53 108 1 49

Figure S1182.  Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.15

Table S4769.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
WSB2 MUTATED 0 7 0
WSB2 WILD-TYPE 18 91 95

Figure S1183.  Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.32

Table S4770.  Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
WSB2 MUTATED 0 1 6 0 0
WSB2 WILD-TYPE 17 33 84 69 1
'KIAA1609 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S4771.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1609 MUTATED 0 1 6
KIAA1609 WILD-TYPE 80 54 146
'KIAA1609 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.63

Table S4772.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1609 MUTATED 4 0 1
KIAA1609 WILD-TYPE 117 37 85
'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4773.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1609 MUTATED 4 0 2
KIAA1609 WILD-TYPE 160 13 78
'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S4774.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1609 MUTATED 0 4 0 2
KIAA1609 WILD-TYPE 49 98 4 100
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S4775.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1609 MUTATED 0 6 1
KIAA1609 WILD-TYPE 26 173 83
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.27

Table S4776.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1609 MUTATED 0 4 3 0 0
KIAA1609 WILD-TYPE 69 54 109 1 49
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S4777.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1609 MUTATED 0 4 0
KIAA1609 WILD-TYPE 18 94 95
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S4778.  Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1609 MUTATED 0 2 2 0 0
KIAA1609 WILD-TYPE 17 32 88 69 1
'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S4779.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AKAP11 MUTATED 2 1 11
AKAP11 WILD-TYPE 78 54 141
'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S4780.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AKAP11 MUTATED 7 3 1
AKAP11 WILD-TYPE 114 34 85
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S4781.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AKAP11 MUTATED 11 1 1
AKAP11 WILD-TYPE 153 12 79
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.1

Table S4782.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AKAP11 MUTATED 1 11 0 1
AKAP11 WILD-TYPE 48 91 4 101

Figure S1184.  Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.12

Table S4783.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AKAP11 MUTATED 2 12 0
AKAP11 WILD-TYPE 24 167 84

Figure S1185.  Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.12

Table S4784.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AKAP11 MUTATED 2 8 4 0 0
AKAP11 WILD-TYPE 67 50 108 1 49

Figure S1186.  Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S4785.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AKAP11 MUTATED 1 8 0
AKAP11 WILD-TYPE 17 90 95

Figure S1187.  Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.21

Table S4786.  Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AKAP11 MUTATED 1 4 4 0 0
AKAP11 WILD-TYPE 16 30 86 69 1

Figure S1188.  Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S4787.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
VASH1 MUTATED 0 1 6
VASH1 WILD-TYPE 80 54 146
'VASH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S4788.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
VASH1 MUTATED 5 0 1
VASH1 WILD-TYPE 116 37 85
'VASH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S4789.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
VASH1 MUTATED 6 0 1
VASH1 WILD-TYPE 158 13 79
'VASH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S4790.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
VASH1 MUTATED 0 6 0 1
VASH1 WILD-TYPE 49 96 4 101
'VASH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S4791.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
VASH1 MUTATED 0 6 1
VASH1 WILD-TYPE 26 173 83
'VASH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S4792.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
VASH1 MUTATED 0 5 1 0 1
VASH1 WILD-TYPE 69 53 111 1 48

Figure S1189.  Get High-res Image Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S4793.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
VASH1 MUTATED 1 1 1
VASH1 WILD-TYPE 17 97 94
'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4794.  Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
VASH1 MUTATED 0 0 2 1 0
VASH1 WILD-TYPE 17 34 88 68 1
'IFNA17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S4795.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IFNA17 MUTATED 2 0 2
IFNA17 WILD-TYPE 78 55 150
'IFNA17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.16

Table S4796.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IFNA17 MUTATED 0 2 1
IFNA17 WILD-TYPE 121 35 85

Figure S1190.  Get High-res Image Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4797.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IFNA17 MUTATED 3 0 1
IFNA17 WILD-TYPE 161 13 79
'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S4798.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IFNA17 MUTATED 0 3 0 1
IFNA17 WILD-TYPE 49 99 4 101
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S4799.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IFNA17 MUTATED 0 4 0
IFNA17 WILD-TYPE 26 175 84
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.76

Table S4800.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IFNA17 MUTATED 2 1 1 0 0
IFNA17 WILD-TYPE 67 57 111 1 49
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S4801.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IFNA17 MUTATED 0 3 0
IFNA17 WILD-TYPE 18 95 95
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 0.91

Table S4802.  Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IFNA17 MUTATED 0 1 1 1 0
IFNA17 WILD-TYPE 17 33 89 68 1
'SBF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.04

Table S4803.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SBF1 MUTATED 2 2 23
SBF1 WILD-TYPE 78 53 129

Figure S1191.  Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SBF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.26

Table S4804.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SBF1 MUTATED 15 1 4
SBF1 WILD-TYPE 106 36 82
'SBF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S4805.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SBF1 MUTATED 20 0 5
SBF1 WILD-TYPE 144 13 75
'SBF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S4806.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SBF1 MUTATED 2 18 0 5
SBF1 WILD-TYPE 47 84 4 97

Figure S1192.  Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.17

Table S4807.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SBF1 MUTATED 1 23 3
SBF1 WILD-TYPE 25 156 81

Figure S1193.  Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0463 (Fisher's exact test), Q value = 0.2

Table S4808.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SBF1 MUTATED 3 8 15 0 1
SBF1 WILD-TYPE 66 50 97 1 48

Figure S1194.  Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.24

Table S4809.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SBF1 MUTATED 3 11 4
SBF1 WILD-TYPE 15 87 91
'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S4810.  Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SBF1 MUTATED 1 5 9 3 0
SBF1 WILD-TYPE 16 29 81 66 1
'SCN9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 0.97

Table S4811.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SCN9A MUTATED 8 4 15
SCN9A WILD-TYPE 72 51 137
'SCN9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.17

Table S4812.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SCN9A MUTATED 16 5 3
SCN9A WILD-TYPE 105 32 83

Figure S1195.  Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S4813.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SCN9A MUTATED 21 1 2
SCN9A WILD-TYPE 143 12 78

Figure S1196.  Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00816 (Fisher's exact test), Q value = 0.089

Table S4814.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SCN9A MUTATED 4 17 0 3
SCN9A WILD-TYPE 45 85 4 99

Figure S1197.  Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.2

Table S4815.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SCN9A MUTATED 2 23 3
SCN9A WILD-TYPE 24 156 81

Figure S1198.  Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 0.29

Table S4816.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SCN9A MUTATED 7 10 10 0 1
SCN9A WILD-TYPE 62 48 102 1 48
'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.18

Table S4817.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SCN9A MUTATED 1 16 5
SCN9A WILD-TYPE 17 82 90

Figure S1199.  Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S4818.  Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SCN9A MUTATED 2 7 10 3 0
SCN9A WILD-TYPE 15 27 80 66 1
'KIAA0586 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S4819.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0586 MUTATED 2 0 8
KIAA0586 WILD-TYPE 78 55 144
'KIAA0586 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S4820.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0586 MUTATED 6 0 2
KIAA0586 WILD-TYPE 115 37 84
'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S4821.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0586 MUTATED 4 1 3
KIAA0586 WILD-TYPE 160 12 77
'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4822.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0586 MUTATED 1 3 0 4
KIAA0586 WILD-TYPE 48 99 4 98
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S4823.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0586 MUTATED 0 9 1
KIAA0586 WILD-TYPE 26 170 83
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4824.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0586 MUTATED 1 4 5 0 0
KIAA0586 WILD-TYPE 68 54 107 1 49
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.23

Table S4825.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0586 MUTATED 2 5 1
KIAA0586 WILD-TYPE 16 93 94
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.68

Table S4826.  Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0586 MUTATED 1 1 5 1 0
KIAA0586 WILD-TYPE 16 33 85 68 1
'MACF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00825 (Fisher's exact test), Q value = 0.089

Table S4827.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MACF1 MUTATED 5 7 32
MACF1 WILD-TYPE 75 48 120

Figure S1200.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MACF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S4828.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MACF1 MUTATED 27 4 7
MACF1 WILD-TYPE 94 33 79

Figure S1201.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.21

Table S4829.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MACF1 MUTATED 33 1 7
MACF1 WILD-TYPE 131 12 73

Figure S1202.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00405 (Fisher's exact test), Q value = 0.061

Table S4830.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MACF1 MUTATED 5 27 0 9
MACF1 WILD-TYPE 44 75 4 93

Figure S1203.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.018

Table S4831.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MACF1 MUTATED 1 39 5
MACF1 WILD-TYPE 25 140 79

Figure S1204.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00279 (Fisher's exact test), Q value = 0.051

Table S4832.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MACF1 MUTATED 6 18 18 0 3
MACF1 WILD-TYPE 63 40 94 1 46

Figure S1205.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.032

Table S4833.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MACF1 MUTATED 3 24 6
MACF1 WILD-TYPE 15 74 89

Figure S1206.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00427 (Fisher's exact test), Q value = 0.063

Table S4834.  Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MACF1 MUTATED 1 11 17 4 0
MACF1 WILD-TYPE 16 23 73 65 1

Figure S1207.  Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DYRK1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4835.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DYRK1A MUTATED 0 1 7
DYRK1A WILD-TYPE 80 54 145
'DYRK1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.75

Table S4836.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DYRK1A MUTATED 5 0 3
DYRK1A WILD-TYPE 116 37 83
'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S4837.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DYRK1A MUTATED 7 0 1
DYRK1A WILD-TYPE 157 13 79
'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S4838.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DYRK1A MUTATED 0 6 0 2
DYRK1A WILD-TYPE 49 96 4 100
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S4839.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DYRK1A MUTATED 0 8 1
DYRK1A WILD-TYPE 26 171 83
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S4840.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DYRK1A MUTATED 0 4 4 0 1
DYRK1A WILD-TYPE 69 54 108 1 48
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S4841.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DYRK1A MUTATED 1 5 2
DYRK1A WILD-TYPE 17 93 93
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4842.  Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DYRK1A MUTATED 0 2 5 1 0
DYRK1A WILD-TYPE 17 32 85 68 1
'GALK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S4843.  Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GALK1 MUTATED 0 0 3
GALK1 WILD-TYPE 80 55 149
'GALK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4844.  Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GALK1 MUTATED 3 0 1
GALK1 WILD-TYPE 161 13 79
'GALK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S4845.  Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GALK1 MUTATED 0 3 0 1
GALK1 WILD-TYPE 49 99 4 101
'GALK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S4846.  Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GALK1 MUTATED 0 4 0
GALK1 WILD-TYPE 26 175 84
'GALK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S4847.  Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GALK1 MUTATED 0 2 2 0 0
GALK1 WILD-TYPE 69 56 110 1 49
'DENND1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S4848.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DENND1C MUTATED 1 0 5
DENND1C WILD-TYPE 79 55 147
'DENND1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S4849.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DENND1C MUTATED 5 1 1
DENND1C WILD-TYPE 116 36 85
'DENND1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S4850.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DENND1C MUTATED 4 1 0
DENND1C WILD-TYPE 160 12 80
'DENND1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S4851.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DENND1C MUTATED 0 4 0 1
DENND1C WILD-TYPE 49 98 4 101
'DENND1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S4852.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DENND1C MUTATED 0 7 0
DENND1C WILD-TYPE 26 172 84
'DENND1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S4853.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DENND1C MUTATED 1 4 2 0 0
DENND1C WILD-TYPE 68 54 110 1 49
'DENND1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.2

Table S4854.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DENND1C MUTATED 0 6 0
DENND1C WILD-TYPE 18 92 95

Figure S1208.  Get High-res Image Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DENND1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S4855.  Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DENND1C MUTATED 0 3 3 0 0
DENND1C WILD-TYPE 17 31 87 69 1
'CNKSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S4856.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CNKSR1 MUTATED 0 1 6
CNKSR1 WILD-TYPE 80 54 146
'CNKSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.23

Table S4857.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CNKSR1 MUTATED 6 0 0
CNKSR1 WILD-TYPE 115 37 86
'CNKSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S4858.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CNKSR1 MUTATED 7 0 0
CNKSR1 WILD-TYPE 157 13 80
'CNKSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S4859.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CNKSR1 MUTATED 0 7 0 0
CNKSR1 WILD-TYPE 49 95 4 102

Figure S1209.  Get High-res Image Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4860.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CNKSR1 MUTATED 0 7 0
CNKSR1 WILD-TYPE 26 172 84
'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.27

Table S4861.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CNKSR1 MUTATED 0 4 3 0 0
CNKSR1 WILD-TYPE 69 54 109 1 49
'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S4862.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CNKSR1 MUTATED 0 3 1
CNKSR1 WILD-TYPE 18 95 94
'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S4863.  Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CNKSR1 MUTATED 0 1 3 0 0
CNKSR1 WILD-TYPE 17 33 87 69 1
'MYCT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.64

Table S4864.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MYCT1 MUTATED 3 1 2
MYCT1 WILD-TYPE 77 54 150
'MYCT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S4865.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MYCT1 MUTATED 2 2 0
MYCT1 WILD-TYPE 119 35 86
'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.55

Table S4866.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MYCT1 MUTATED 5 0 0
MYCT1 WILD-TYPE 159 13 80
'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S4867.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MYCT1 MUTATED 2 3 0 0
MYCT1 WILD-TYPE 47 99 4 102
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.91

Table S4868.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MYCT1 MUTATED 0 5 1
MYCT1 WILD-TYPE 26 174 83
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.2

Table S4869.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MYCT1 MUTATED 3 3 0 0 0
MYCT1 WILD-TYPE 66 55 112 1 49

Figure S1210.  Get High-res Image Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.85

Table S4870.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MYCT1 MUTATED 0 3 1
MYCT1 WILD-TYPE 18 95 94
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S4871.  Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MYCT1 MUTATED 1 1 1 1 0
MYCT1 WILD-TYPE 16 33 89 68 1
'ATRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S4872.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATRIP MUTATED 0 1 4
ATRIP WILD-TYPE 80 54 148
'ATRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.42

Table S4873.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATRIP MUTATED 4 0 0
ATRIP WILD-TYPE 117 37 86
'ATRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S4874.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATRIP MUTATED 5 0 0
ATRIP WILD-TYPE 159 13 80
'ATRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.24

Table S4875.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATRIP MUTATED 0 5 0 0
ATRIP WILD-TYPE 49 97 4 102
'ATRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S4876.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATRIP MUTATED 0 5 0
ATRIP WILD-TYPE 26 174 84
'ATRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S4877.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATRIP MUTATED 0 3 2 0 0
ATRIP WILD-TYPE 69 55 110 1 49
'ATRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S4878.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATRIP MUTATED 0 4 0
ATRIP WILD-TYPE 18 94 95
'ATRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.21

Table S4879.  Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATRIP MUTATED 0 3 1 0 0
ATRIP WILD-TYPE 17 31 89 69 1

Figure S1211.  Get High-res Image Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TIMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S4880.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TIMP3 MUTATED 2 0 4
TIMP3 WILD-TYPE 78 55 148
'TIMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S4881.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TIMP3 MUTATED 4 1 0
TIMP3 WILD-TYPE 117 36 86
'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.27

Table S4882.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TIMP3 MUTATED 5 1 0
TIMP3 WILD-TYPE 159 12 80
'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S4883.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TIMP3 MUTATED 2 3 0 1
TIMP3 WILD-TYPE 47 99 4 101
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S4884.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TIMP3 MUTATED 1 4 1
TIMP3 WILD-TYPE 25 175 83
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S4885.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TIMP3 MUTATED 2 3 1 0 0
TIMP3 WILD-TYPE 67 55 111 1 49
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.32

Table S4886.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TIMP3 MUTATED 1 2 0
TIMP3 WILD-TYPE 17 96 95
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.18

Table S4887.  Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TIMP3 MUTATED 1 2 0 0 0
TIMP3 WILD-TYPE 16 32 90 69 1

Figure S1212.  Get High-res Image Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S4888.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ELK3 MUTATED 0 1 4
ELK3 WILD-TYPE 80 54 148
'ELK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S4889.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ELK3 MUTATED 5 0 1
ELK3 WILD-TYPE 116 37 85
'ELK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S4890.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ELK3 MUTATED 6 0 0
ELK3 WILD-TYPE 158 13 80
'ELK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.17

Table S4891.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ELK3 MUTATED 0 6 0 0
ELK3 WILD-TYPE 49 96 4 102

Figure S1213.  Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S4892.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ELK3 MUTATED 0 6 0
ELK3 WILD-TYPE 26 173 84
'ELK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S4893.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ELK3 MUTATED 0 5 1 0 0
ELK3 WILD-TYPE 69 53 111 1 49

Figure S1214.  Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.2

Table S4894.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ELK3 MUTATED 0 6 0
ELK3 WILD-TYPE 18 92 95

Figure S1215.  Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S4895.  Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ELK3 MUTATED 0 2 4 0 0
ELK3 WILD-TYPE 17 32 86 69 1
'CD3EAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.23

Table S4896.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CD3EAP MUTATED 0 0 7
CD3EAP WILD-TYPE 80 55 145
'CD3EAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S4897.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CD3EAP MUTATED 3 0 1
CD3EAP WILD-TYPE 118 37 85
'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4898.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CD3EAP MUTATED 4 0 2
CD3EAP WILD-TYPE 160 13 78
'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S4899.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CD3EAP MUTATED 0 4 0 2
CD3EAP WILD-TYPE 49 98 4 100
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S4900.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CD3EAP MUTATED 0 6 1
CD3EAP WILD-TYPE 26 173 83
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.27

Table S4901.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CD3EAP MUTATED 0 4 3 0 0
CD3EAP WILD-TYPE 69 54 109 1 49
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S4902.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CD3EAP MUTATED 0 4 0
CD3EAP WILD-TYPE 18 94 95
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S4903.  Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CD3EAP MUTATED 0 1 3 0 0
CD3EAP WILD-TYPE 17 33 87 69 1
'MAPK15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.23

Table S4904.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAPK15 MUTATED 0 0 7
MAPK15 WILD-TYPE 80 55 145
'MAPK15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S4905.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAPK15 MUTATED 3 0 0
MAPK15 WILD-TYPE 118 37 86
'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.86

Table S4906.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAPK15 MUTATED 5 0 1
MAPK15 WILD-TYPE 159 13 79
'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S4907.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAPK15 MUTATED 0 5 0 1
MAPK15 WILD-TYPE 49 97 4 101
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S4908.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAPK15 MUTATED 0 6 1
MAPK15 WILD-TYPE 26 173 83
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S4909.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAPK15 MUTATED 1 4 2 0 0
MAPK15 WILD-TYPE 68 54 110 1 49
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S4910.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAPK15 MUTATED 0 1 2
MAPK15 WILD-TYPE 18 97 93
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.91

Table S4911.  Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAPK15 MUTATED 0 1 1 1 0
MAPK15 WILD-TYPE 17 33 89 68 1
'PARP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S4912.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PARP15 MUTATED 0 0 4
PARP15 WILD-TYPE 80 55 148
'PARP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S4913.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PARP15 MUTATED 3 0 1
PARP15 WILD-TYPE 118 37 85
'PARP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4914.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PARP15 MUTATED 2 0 1
PARP15 WILD-TYPE 162 13 79
'PARP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4915.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PARP15 MUTATED 0 2 0 1
PARP15 WILD-TYPE 49 100 4 101
'PARP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4916.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PARP15 MUTATED 0 3 1
PARP15 WILD-TYPE 26 176 83
'PARP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S4917.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PARP15 MUTATED 0 1 3 0 0
PARP15 WILD-TYPE 69 57 109 1 49
'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S4918.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PARP15 MUTATED 1 2 1
PARP15 WILD-TYPE 17 96 94
'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.87

Table S4919.  Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PARP15 MUTATED 0 0 3 1 0
PARP15 WILD-TYPE 17 34 87 68 1
'TM6SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.3

Table S4920.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TM6SF1 MUTATED 0 0 6
TM6SF1 WILD-TYPE 80 55 146
'TM6SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S4921.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TM6SF1 MUTATED 4 0 0
TM6SF1 WILD-TYPE 117 37 86
'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S4922.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TM6SF1 MUTATED 6 0 0
TM6SF1 WILD-TYPE 158 13 80
'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S4923.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TM6SF1 MUTATED 0 5 0 1
TM6SF1 WILD-TYPE 49 97 4 101
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S4924.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TM6SF1 MUTATED 0 6 0
TM6SF1 WILD-TYPE 26 173 84
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S4925.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TM6SF1 MUTATED 0 5 1 0 0
TM6SF1 WILD-TYPE 69 53 111 1 49

Figure S1216.  Get High-res Image Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4926.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TM6SF1 MUTATED 0 2 1
TM6SF1 WILD-TYPE 18 96 94
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S4927.  Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TM6SF1 MUTATED 0 0 3 0 0
TM6SF1 WILD-TYPE 17 34 87 69 1
'DDX50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.072

Table S4928.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DDX50 MUTATED 0 0 11
DDX50 WILD-TYPE 80 55 141

Figure S1217.  Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.27

Table S4929.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DDX50 MUTATED 8 0 1
DDX50 WILD-TYPE 113 37 85
'DDX50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4930.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DDX50 MUTATED 7 0 3
DDX50 WILD-TYPE 157 13 77
'DDX50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S4931.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DDX50 MUTATED 0 7 0 3
DDX50 WILD-TYPE 49 95 4 99
'DDX50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.4

Table S4932.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DDX50 MUTATED 0 10 1
DDX50 WILD-TYPE 26 169 83
'DDX50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.19

Table S4933.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DDX50 MUTATED 0 6 4 0 1
DDX50 WILD-TYPE 69 52 108 1 48

Figure S1218.  Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.4

Table S4934.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DDX50 MUTATED 0 7 2
DDX50 WILD-TYPE 18 91 93
'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S4935.  Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DDX50 MUTATED 0 4 4 1 0
DDX50 WILD-TYPE 17 30 86 68 1
'CCDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S4936.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CCDC27 MUTATED 1 0 5
CCDC27 WILD-TYPE 79 55 147
'CCDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4937.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CCDC27 MUTATED 3 0 2
CCDC27 WILD-TYPE 118 37 84
'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S4938.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CCDC27 MUTATED 3 0 3
CCDC27 WILD-TYPE 161 13 77
'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S4939.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CCDC27 MUTATED 0 2 0 4
CCDC27 WILD-TYPE 49 100 4 98
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.91

Table S4940.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CCDC27 MUTATED 0 5 1
CCDC27 WILD-TYPE 26 174 83
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.49

Table S4941.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CCDC27 MUTATED 1 3 1 0 1
CCDC27 WILD-TYPE 68 55 111 1 48
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4942.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CCDC27 MUTATED 0 3 2
CCDC27 WILD-TYPE 18 95 93
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.98

Table S4943.  Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CCDC27 MUTATED 0 1 3 1 0
CCDC27 WILD-TYPE 17 33 87 68 1
'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.41

Table S4944.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EPHB6 MUTATED 1 1 9
EPHB6 WILD-TYPE 79 54 143
'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.26

Table S4945.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EPHB6 MUTATED 9 1 1
EPHB6 WILD-TYPE 112 36 85
'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.23

Table S4946.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EPHB6 MUTATED 10 0 0
EPHB6 WILD-TYPE 154 13 80
'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00962 (Fisher's exact test), Q value = 0.099

Table S4947.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EPHB6 MUTATED 1 9 0 0
EPHB6 WILD-TYPE 48 93 4 102

Figure S1219.  Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.49

Table S4948.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EPHB6 MUTATED 1 9 1
EPHB6 WILD-TYPE 25 170 83
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S4949.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EPHB6 MUTATED 1 4 6 0 0
EPHB6 WILD-TYPE 68 54 106 1 49
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.22

Table S4950.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EPHB6 MUTATED 1 8 1
EPHB6 WILD-TYPE 17 90 94
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S4951.  Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EPHB6 MUTATED 0 3 6 1 0
EPHB6 WILD-TYPE 17 31 84 68 1
'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S4952.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TRIP11 MUTATED 2 3 8
TRIP11 WILD-TYPE 78 52 144
'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S4953.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TRIP11 MUTATED 7 1 4
TRIP11 WILD-TYPE 114 36 82
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.82

Table S4954.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TRIP11 MUTATED 8 0 2
TRIP11 WILD-TYPE 156 13 78
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 0.9

Table S4955.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TRIP11 MUTATED 2 5 0 3
TRIP11 WILD-TYPE 47 97 4 99
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.71

Table S4956.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TRIP11 MUTATED 0 10 3
TRIP11 WILD-TYPE 26 169 81
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 0.85

Table S4957.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TRIP11 MUTATED 3 2 7 0 1
TRIP11 WILD-TYPE 66 56 105 1 48
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S4958.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TRIP11 MUTATED 1 8 3
TRIP11 WILD-TYPE 17 90 92
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S4959.  Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TRIP11 MUTATED 0 1 8 3 0
TRIP11 WILD-TYPE 17 33 82 66 1
'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S4960.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ITGAV MUTATED 5 0 8
ITGAV WILD-TYPE 75 55 144
'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.68

Table S4961.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ITGAV MUTATED 7 2 2
ITGAV WILD-TYPE 114 35 84
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4962.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ITGAV MUTATED 8 0 3
ITGAV WILD-TYPE 156 13 77
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S4963.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ITGAV MUTATED 1 7 0 3
ITGAV WILD-TYPE 48 95 4 99
'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S4964.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ITGAV MUTATED 2 10 1
ITGAV WILD-TYPE 24 169 83
'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S4965.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ITGAV MUTATED 4 4 5 0 0
ITGAV WILD-TYPE 65 54 107 1 49
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.4

Table S4966.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ITGAV MUTATED 0 7 2
ITGAV WILD-TYPE 18 91 93
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S4967.  Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ITGAV MUTATED 1 5 3 0 0
ITGAV WILD-TYPE 16 29 87 69 1

Figure S1220.  Get High-res Image Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BCL2L14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S4968.  Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BCL2L14 MUTATED 0 1 2
BCL2L14 WILD-TYPE 80 54 150
'BCL2L14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.74

Table S4969.  Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BCL2L14 MUTATED 3 0 0
BCL2L14 WILD-TYPE 161 13 80
'BCL2L14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S4970.  Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BCL2L14 MUTATED 1 2 0 0
BCL2L14 WILD-TYPE 48 100 4 102
'BCL2L14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S4971.  Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BCL2L14 MUTATED 0 3 0
BCL2L14 WILD-TYPE 26 176 84
'BCL2L14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S4972.  Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BCL2L14 MUTATED 0 2 1 0 0
BCL2L14 WILD-TYPE 69 56 111 1 49
'CDX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S4973.  Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDX2 MUTATED 0 0 3
CDX2 WILD-TYPE 80 55 149
'CDX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4974.  Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDX2 MUTATED 2 0 1
CDX2 WILD-TYPE 162 13 79
'CDX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4975.  Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDX2 MUTATED 0 1 0 2
CDX2 WILD-TYPE 49 101 4 100
'CDX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S4976.  Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDX2 MUTATED 0 3 0
CDX2 WILD-TYPE 26 176 84
'CDX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S4977.  Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDX2 MUTATED 0 2 1 0 0
CDX2 WILD-TYPE 69 56 111 1 49
'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S4978.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC7A10 MUTATED 0 0 4
SLC7A10 WILD-TYPE 80 55 148
'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S4979.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC7A10 MUTATED 4 0 1
SLC7A10 WILD-TYPE 117 37 85
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4980.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC7A10 MUTATED 4 0 1
SLC7A10 WILD-TYPE 160 13 79
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S4981.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC7A10 MUTATED 0 4 0 1
SLC7A10 WILD-TYPE 49 98 4 101
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S4982.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC7A10 MUTATED 0 5 0
SLC7A10 WILD-TYPE 26 174 84
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S4983.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC7A10 MUTATED 0 2 3 0 0
SLC7A10 WILD-TYPE 69 56 109 1 49
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S4984.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC7A10 MUTATED 0 5 0
SLC7A10 WILD-TYPE 18 93 95
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S4985.  Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC7A10 MUTATED 0 1 4 0 0
SLC7A10 WILD-TYPE 17 33 86 69 1
'RGS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S4986.  Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RGS2 MUTATED 0 1 2
RGS2 WILD-TYPE 80 54 150
'RGS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.74

Table S4987.  Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RGS2 MUTATED 3 0 0
RGS2 WILD-TYPE 161 13 80
'RGS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S4988.  Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RGS2 MUTATED 1 2 0 0
RGS2 WILD-TYPE 48 100 4 102
'RGS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4989.  Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RGS2 MUTATED 0 2 1
RGS2 WILD-TYPE 26 177 83
'RGS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S4990.  Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RGS2 MUTATED 1 2 0 0 0
RGS2 WILD-TYPE 68 56 112 1 49
'SAMD9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.25

Table S4991.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SAMD9L MUTATED 1 4 13
SAMD9L WILD-TYPE 79 51 139
'SAMD9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S4992.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SAMD9L MUTATED 11 1 3
SAMD9L WILD-TYPE 110 36 83
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S4993.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SAMD9L MUTATED 12 1 3
SAMD9L WILD-TYPE 152 12 77
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S4994.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SAMD9L MUTATED 2 9 0 5
SAMD9L WILD-TYPE 47 93 4 97
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.41

Table S4995.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SAMD9L MUTATED 2 14 2
SAMD9L WILD-TYPE 24 165 82
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S4996.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SAMD9L MUTATED 1 7 10 0 0
SAMD9L WILD-TYPE 68 51 102 1 49

Figure S1221.  Get High-res Image Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.24

Table S4997.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SAMD9L MUTATED 2 8 2
SAMD9L WILD-TYPE 16 90 93
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S4998.  Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SAMD9L MUTATED 0 2 9 1 0
SAMD9L WILD-TYPE 17 32 81 68 1
'DUSP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S4999.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DUSP11 MUTATED 0 0 4
DUSP11 WILD-TYPE 80 55 148
'DUSP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S5000.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DUSP11 MUTATED 3 0 0
DUSP11 WILD-TYPE 118 37 86
'DUSP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.74

Table S5001.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DUSP11 MUTATED 3 0 0
DUSP11 WILD-TYPE 161 13 80
'DUSP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S5002.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DUSP11 MUTATED 0 3 0 0
DUSP11 WILD-TYPE 49 99 4 102
'DUSP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S5003.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DUSP11 MUTATED 0 4 0
DUSP11 WILD-TYPE 26 175 84
'DUSP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 0.28

Table S5004.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DUSP11 MUTATED 0 3 1 0 0
DUSP11 WILD-TYPE 69 55 111 1 49
'DUSP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.52

Table S5005.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DUSP11 MUTATED 0 3 0
DUSP11 WILD-TYPE 18 95 95
'DUSP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.35

Table S5006.  Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DUSP11 MUTATED 0 2 1 0 0
DUSP11 WILD-TYPE 17 32 89 69 1
'MRPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S5007.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MRPL2 MUTATED 0 0 5
MRPL2 WILD-TYPE 80 55 147
'MRPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S5008.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MRPL2 MUTATED 3 0 1
MRPL2 WILD-TYPE 118 37 85
'MRPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.86

Table S5009.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MRPL2 MUTATED 5 0 1
MRPL2 WILD-TYPE 159 13 79
'MRPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S5010.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MRPL2 MUTATED 0 5 0 1
MRPL2 WILD-TYPE 49 97 4 101
'MRPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.51

Table S5011.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MRPL2 MUTATED 0 6 0
MRPL2 WILD-TYPE 26 173 84
'MRPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0679 (Fisher's exact test), Q value = 0.25

Table S5012.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MRPL2 MUTATED 0 4 2 0 0
MRPL2 WILD-TYPE 69 54 110 1 49
'MRPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S5013.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MRPL2 MUTATED 0 4 0
MRPL2 WILD-TYPE 18 94 95
'MRPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S5014.  Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MRPL2 MUTATED 0 1 3 0 0
MRPL2 WILD-TYPE 17 33 87 69 1
'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.17

Table S5015.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC4A3 MUTATED 1 1 13
SLC4A3 WILD-TYPE 79 54 139

Figure S1222.  Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.23

Table S5016.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC4A3 MUTATED 10 1 1
SLC4A3 WILD-TYPE 111 36 85
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.75

Table S5017.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC4A3 MUTATED 11 0 3
SLC4A3 WILD-TYPE 153 13 77
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S5018.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC4A3 MUTATED 0 11 0 3
SLC4A3 WILD-TYPE 49 91 4 99

Figure S1223.  Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S5019.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC4A3 MUTATED 1 14 0
SLC4A3 WILD-TYPE 25 165 84

Figure S1224.  Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S5020.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC4A3 MUTATED 3 6 6 0 0
SLC4A3 WILD-TYPE 66 52 106 1 49
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.23

Table S5021.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC4A3 MUTATED 0 9 2
SLC4A3 WILD-TYPE 18 89 93
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0419 (Fisher's exact test), Q value = 0.19

Table S5022.  Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC4A3 MUTATED 0 3 8 0 0
SLC4A3 WILD-TYPE 17 31 82 69 1

Figure S1225.  Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZDHHC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S5023.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZDHHC5 MUTATED 2 0 8
ZDHHC5 WILD-TYPE 78 55 144
'ZDHHC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S5024.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZDHHC5 MUTATED 5 2 2
ZDHHC5 WILD-TYPE 116 35 84
'ZDHHC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.4

Table S5025.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZDHHC5 MUTATED 7 1 1
ZDHHC5 WILD-TYPE 157 12 79
'ZDHHC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.57

Table S5026.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZDHHC5 MUTATED 1 6 0 2
ZDHHC5 WILD-TYPE 48 96 4 100
'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.39

Table S5027.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZDHHC5 MUTATED 2 7 1
ZDHHC5 WILD-TYPE 24 172 83
'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S5028.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZDHHC5 MUTATED 3 2 4 0 1
ZDHHC5 WILD-TYPE 66 56 108 1 48
'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.28

Table S5029.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZDHHC5 MUTATED 1 7 1
ZDHHC5 WILD-TYPE 17 91 94
'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S5030.  Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZDHHC5 MUTATED 0 2 6 1 0
ZDHHC5 WILD-TYPE 17 32 84 68 1
'GCDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S5031.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GCDH MUTATED 0 1 7
GCDH WILD-TYPE 80 54 145
'GCDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5032.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GCDH MUTATED 3 0 2
GCDH WILD-TYPE 118 37 84
'GCDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.27

Table S5033.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GCDH MUTATED 5 1 0
GCDH WILD-TYPE 159 12 80
'GCDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S5034.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GCDH MUTATED 0 5 0 1
GCDH WILD-TYPE 49 97 4 101
'GCDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.28

Table S5035.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GCDH MUTATED 0 8 0
GCDH WILD-TYPE 26 171 84
'GCDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.25

Table S5036.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GCDH MUTATED 1 5 2 0 0
GCDH WILD-TYPE 68 53 110 1 49
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S5037.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GCDH MUTATED 0 4 0
GCDH WILD-TYPE 18 94 95
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S5038.  Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GCDH MUTATED 0 2 2 0 0
GCDH WILD-TYPE 17 32 88 69 1
'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.95

Table S5039.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
BTNL8 MUTATED 1 1 4
BTNL8 WILD-TYPE 79 54 148
'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S5040.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
BTNL8 MUTATED 1 1 3
BTNL8 WILD-TYPE 120 36 83
'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S5041.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
BTNL8 MUTATED 4 1 1
BTNL8 WILD-TYPE 160 12 79
'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5042.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
BTNL8 MUTATED 1 3 0 2
BTNL8 WILD-TYPE 48 99 4 100
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.51

Table S5043.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
BTNL8 MUTATED 0 6 0
BTNL8 WILD-TYPE 26 173 84
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S5044.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
BTNL8 MUTATED 2 2 2 0 0
BTNL8 WILD-TYPE 67 56 110 1 49
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.39

Table S5045.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
BTNL8 MUTATED 0 4 0
BTNL8 WILD-TYPE 18 94 95
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5046.  Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
BTNL8 MUTATED 0 1 2 1 0
BTNL8 WILD-TYPE 17 33 88 68 1
'RASA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S5047.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RASA2 MUTATED 0 1 7
RASA2 WILD-TYPE 80 54 145
'RASA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5048.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RASA2 MUTATED 3 0 2
RASA2 WILD-TYPE 118 37 84
'RASA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.88

Table S5049.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RASA2 MUTATED 4 0 3
RASA2 WILD-TYPE 160 13 77
'RASA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S5050.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RASA2 MUTATED 0 4 0 3
RASA2 WILD-TYPE 49 98 4 99
'RASA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S5051.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RASA2 MUTATED 0 7 1
RASA2 WILD-TYPE 26 172 83
'RASA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.22

Table S5052.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RASA2 MUTATED 0 5 2 0 1
RASA2 WILD-TYPE 69 53 110 1 48
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5053.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RASA2 MUTATED 0 2 1
RASA2 WILD-TYPE 18 96 94
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.91

Table S5054.  Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RASA2 MUTATED 0 1 1 1 0
RASA2 WILD-TYPE 17 33 89 68 1
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.86

Table S5055.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIK3R1 MUTATED 2 1 7
PIK3R1 WILD-TYPE 78 54 145
'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S5056.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIK3R1 MUTATED 5 0 2
PIK3R1 WILD-TYPE 116 37 84
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.92

Table S5057.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIK3R1 MUTATED 7 0 2
PIK3R1 WILD-TYPE 157 13 78
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S5058.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIK3R1 MUTATED 2 6 0 1
PIK3R1 WILD-TYPE 47 96 4 101
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S5059.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIK3R1 MUTATED 0 9 1
PIK3R1 WILD-TYPE 26 170 83
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.2

Table S5060.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIK3R1 MUTATED 2 6 2 0 0
PIK3R1 WILD-TYPE 67 52 110 1 49

Figure S1226.  Get High-res Image Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S5061.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIK3R1 MUTATED 0 5 1
PIK3R1 WILD-TYPE 18 93 94
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S5062.  Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIK3R1 MUTATED 1 2 3 0 0
PIK3R1 WILD-TYPE 16 32 87 69 1
'CDC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S5063.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CDC5L MUTATED 2 1 11
CDC5L WILD-TYPE 78 54 141
'CDC5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S5064.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CDC5L MUTATED 8 0 2
CDC5L WILD-TYPE 113 37 84
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.75

Table S5065.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CDC5L MUTATED 11 0 3
CDC5L WILD-TYPE 153 13 77
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S5066.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CDC5L MUTATED 2 9 0 3
CDC5L WILD-TYPE 47 93 4 99
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S5067.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CDC5L MUTATED 1 12 2
CDC5L WILD-TYPE 25 167 82
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.17

Table S5068.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CDC5L MUTATED 1 8 5 0 1
CDC5L WILD-TYPE 68 50 107 1 48

Figure S1227.  Get High-res Image Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.68

Table S5069.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CDC5L MUTATED 1 6 3
CDC5L WILD-TYPE 17 92 92
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S5070.  Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CDC5L MUTATED 0 4 4 2 0
CDC5L WILD-TYPE 17 30 86 67 1
'COL20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S5071.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
COL20A1 MUTATED 2 2 14
COL20A1 WILD-TYPE 78 53 138
'COL20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S5072.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
COL20A1 MUTATED 11 0 5
COL20A1 WILD-TYPE 110 37 81
'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.85

Table S5073.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
COL20A1 MUTATED 11 1 4
COL20A1 WILD-TYPE 153 12 76
'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S5074.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
COL20A1 MUTATED 2 9 0 5
COL20A1 WILD-TYPE 47 93 4 97
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.68

Table S5075.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
COL20A1 MUTATED 2 13 3
COL20A1 WILD-TYPE 24 166 81
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S5076.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
COL20A1 MUTATED 2 10 4 0 2
COL20A1 WILD-TYPE 67 48 108 1 47

Figure S1228.  Get High-res Image Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S5077.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
COL20A1 MUTATED 2 9 5
COL20A1 WILD-TYPE 16 89 90
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5078.  Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
COL20A1 MUTATED 1 3 7 5 0
COL20A1 WILD-TYPE 16 31 83 64 1
'AP3M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.27

Table S5079.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AP3M2 MUTATED 1 0 9
AP3M2 WILD-TYPE 79 55 143
'AP3M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.67

Table S5080.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AP3M2 MUTATED 5 1 1
AP3M2 WILD-TYPE 116 36 85
'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S5081.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AP3M2 MUTATED 8 0 2
AP3M2 WILD-TYPE 156 13 78
'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S5082.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AP3M2 MUTATED 0 6 0 4
AP3M2 WILD-TYPE 49 96 4 98
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.46

Table S5083.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AP3M2 MUTATED 0 9 1
AP3M2 WILD-TYPE 26 170 83
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S5084.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AP3M2 MUTATED 0 6 2 0 2
AP3M2 WILD-TYPE 69 52 110 1 47

Figure S1229.  Get High-res Image Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.64

Table S5085.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AP3M2 MUTATED 0 4 1
AP3M2 WILD-TYPE 18 94 94
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S5086.  Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AP3M2 MUTATED 0 2 3 0 0
AP3M2 WILD-TYPE 17 32 87 69 1
'NAA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S5087.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NAA16 MUTATED 1 0 7
NAA16 WILD-TYPE 79 55 145
'NAA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S5088.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NAA16 MUTATED 4 0 1
NAA16 WILD-TYPE 117 37 85
'NAA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.28

Table S5089.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NAA16 MUTATED 6 1 0
NAA16 WILD-TYPE 158 12 80
'NAA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S5090.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NAA16 MUTATED 0 4 0 3
NAA16 WILD-TYPE 49 98 4 99
'NAA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S5091.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NAA16 MUTATED 1 7 0
NAA16 WILD-TYPE 25 172 84
'NAA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S5092.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NAA16 MUTATED 2 4 2 0 0
NAA16 WILD-TYPE 67 54 110 1 49
'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S5093.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NAA16 MUTATED 1 3 2
NAA16 WILD-TYPE 17 95 93
'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.45

Table S5094.  Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NAA16 MUTATED 0 1 5 0 0
NAA16 WILD-TYPE 17 33 85 69 1
'NPR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.31

Table S5095.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NPR3 MUTATED 2 0 9
NPR3 WILD-TYPE 78 55 143
'NPR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.96

Table S5096.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NPR3 MUTATED 5 1 2
NPR3 WILD-TYPE 116 36 84
'NPR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.73

Table S5097.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NPR3 MUTATED 6 1 3
NPR3 WILD-TYPE 158 12 77
'NPR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S5098.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NPR3 MUTATED 1 5 0 4
NPR3 WILD-TYPE 48 97 4 98
'NPR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.4

Table S5099.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NPR3 MUTATED 0 10 1
NPR3 WILD-TYPE 26 169 83
'NPR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S5100.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NPR3 MUTATED 1 3 6 0 1
NPR3 WILD-TYPE 68 55 106 1 48
'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S5101.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NPR3 MUTATED 1 4 2
NPR3 WILD-TYPE 17 94 93
'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S5102.  Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NPR3 MUTATED 1 1 4 1 0
NPR3 WILD-TYPE 16 33 86 68 1
'COX8C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S5103.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
COX8C MUTATED 0 0 4
COX8C WILD-TYPE 80 55 148
'COX8C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.57

Table S5104.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
COX8C MUTATED 3 0 0
COX8C WILD-TYPE 118 37 86
'COX8C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.74

Table S5105.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
COX8C MUTATED 3 0 0
COX8C WILD-TYPE 161 13 80
'COX8C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S5106.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
COX8C MUTATED 0 3 0 0
COX8C WILD-TYPE 49 99 4 102
'COX8C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5107.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
COX8C MUTATED 0 3 1
COX8C WILD-TYPE 26 176 83
'COX8C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 0.86

Table S5108.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
COX8C MUTATED 0 1 2 0 1
COX8C WILD-TYPE 69 57 110 1 48
'COX8C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5109.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
COX8C MUTATED 0 2 1
COX8C WILD-TYPE 18 96 94
'COX8C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5110.  Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
COX8C MUTATED 0 0 2 1 0
COX8C WILD-TYPE 17 34 88 68 1
'KLHDC8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S5111.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KLHDC8B MUTATED 1 1 6
KLHDC8B WILD-TYPE 79 54 146
'KLHDC8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S5112.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KLHDC8B MUTATED 5 0 2
KLHDC8B WILD-TYPE 116 37 84
'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5113.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KLHDC8B MUTATED 4 0 2
KLHDC8B WILD-TYPE 160 13 78
'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5114.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KLHDC8B MUTATED 1 3 0 2
KLHDC8B WILD-TYPE 48 99 4 100
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5115.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KLHDC8B MUTATED 0 6 2
KLHDC8B WILD-TYPE 26 173 82
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.97

Table S5116.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KLHDC8B MUTATED 1 2 4 0 1
KLHDC8B WILD-TYPE 68 56 108 1 48
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5117.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KLHDC8B MUTATED 0 2 2
KLHDC8B WILD-TYPE 18 96 93
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5118.  Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KLHDC8B MUTATED 0 0 2 2 0
KLHDC8B WILD-TYPE 17 34 88 67 1
'ZBTB40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S5119.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZBTB40 MUTATED 1 2 7
ZBTB40 WILD-TYPE 79 53 145
'ZBTB40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.17

Table S5120.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZBTB40 MUTATED 8 1 0
ZBTB40 WILD-TYPE 113 36 86

Figure S1230.  Get High-res Image Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S5121.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZBTB40 MUTATED 6 0 1
ZBTB40 WILD-TYPE 158 13 79
'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S5122.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZBTB40 MUTATED 0 5 0 2
ZBTB40 WILD-TYPE 49 97 4 100
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.39

Table S5123.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZBTB40 MUTATED 2 7 1
ZBTB40 WILD-TYPE 24 172 83
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5124.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZBTB40 MUTATED 1 5 4 0 0
ZBTB40 WILD-TYPE 68 53 108 1 49
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S5125.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZBTB40 MUTATED 1 7 0
ZBTB40 WILD-TYPE 17 91 95

Figure S1231.  Get High-res Image Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0998 (Fisher's exact test), Q value = 0.29

Table S5126.  Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZBTB40 MUTATED 0 1 7 0 0
ZBTB40 WILD-TYPE 17 33 83 69 1
'FOLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.23

Table S5127.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FOLH1 MUTATED 0 2 9
FOLH1 WILD-TYPE 80 53 143
'FOLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S5128.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FOLH1 MUTATED 7 0 2
FOLH1 WILD-TYPE 114 37 84
'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.88

Table S5129.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FOLH1 MUTATED 4 0 3
FOLH1 WILD-TYPE 160 13 77
'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.72

Table S5130.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FOLH1 MUTATED 0 4 0 3
FOLH1 WILD-TYPE 49 98 4 99
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5131.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FOLH1 MUTATED 1 7 3
FOLH1 WILD-TYPE 25 172 81
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.74

Table S5132.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FOLH1 MUTATED 2 4 4 0 1
FOLH1 WILD-TYPE 67 54 108 1 48
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S5133.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FOLH1 MUTATED 1 6 2
FOLH1 WILD-TYPE 17 92 93
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.99

Table S5134.  Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FOLH1 MUTATED 0 2 4 3 0
FOLH1 WILD-TYPE 17 32 86 66 1
'TXLNG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.23

Table S5135.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TXLNG MUTATED 0 0 7
TXLNG WILD-TYPE 80 55 145
'TXLNG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S5136.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TXLNG MUTATED 5 0 0
TXLNG WILD-TYPE 116 37 86
'TXLNG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5137.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TXLNG MUTATED 4 0 1
TXLNG WILD-TYPE 160 13 79
'TXLNG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S5138.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TXLNG MUTATED 0 4 0 1
TXLNG WILD-TYPE 49 98 4 101
'TXLNG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S5139.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TXLNG MUTATED 0 7 0
TXLNG WILD-TYPE 26 172 84
'TXLNG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S5140.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TXLNG MUTATED 1 4 2 0 0
TXLNG WILD-TYPE 68 54 110 1 49
'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.31

Table S5141.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TXLNG MUTATED 0 5 0
TXLNG WILD-TYPE 18 93 95
'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S5142.  Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TXLNG MUTATED 0 1 4 0 0
TXLNG WILD-TYPE 17 33 86 69 1
'SFTPC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S5143.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SFTPC MUTATED 0 0 3
SFTPC WILD-TYPE 80 55 149
'SFTPC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S5144.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SFTPC MUTATED 3 0 0
SFTPC WILD-TYPE 118 37 86
'SFTPC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.74

Table S5145.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SFTPC MUTATED 3 0 0
SFTPC WILD-TYPE 161 13 80
'SFTPC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S5146.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SFTPC MUTATED 0 3 0 0
SFTPC WILD-TYPE 49 99 4 102
'SFTPC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S5147.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SFTPC MUTATED 0 3 0
SFTPC WILD-TYPE 26 176 84
'SFTPC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S5148.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SFTPC MUTATED 0 2 1 0 0
SFTPC WILD-TYPE 69 56 111 1 49
'SFTPC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.52

Table S5149.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SFTPC MUTATED 0 3 0
SFTPC WILD-TYPE 18 95 95
'SFTPC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S5150.  Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SFTPC MUTATED 0 1 2 0 0
SFTPC WILD-TYPE 17 33 88 69 1
'P2RX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S5151.  Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
P2RX1 MUTATED 0 0 3
P2RX1 WILD-TYPE 80 55 149
'P2RX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.57

Table S5152.  Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
P2RX1 MUTATED 3 0 0
P2RX1 WILD-TYPE 118 37 86
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5153.  Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
P2RX1 MUTATED 0 2 1
P2RX1 WILD-TYPE 26 177 83
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.8

Table S5154.  Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
P2RX1 MUTATED 0 1 2 0 0
P2RX1 WILD-TYPE 69 57 110 1 49
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5155.  Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
P2RX1 MUTATED 0 2 1
P2RX1 WILD-TYPE 18 96 94
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.24

Table S5156.  Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
P2RX1 MUTATED 0 2 0 1 0
P2RX1 WILD-TYPE 17 32 90 68 1
'CORIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.86

Table S5157.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CORIN MUTATED 2 1 7
CORIN WILD-TYPE 78 54 145
'CORIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.23

Table S5158.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CORIN MUTATED 7 1 0
CORIN WILD-TYPE 114 36 86
'CORIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.27

Table S5159.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CORIN MUTATED 9 0 0
CORIN WILD-TYPE 155 13 80
'CORIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.13

Table S5160.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CORIN MUTATED 1 8 0 0
CORIN WILD-TYPE 48 94 4 102

Figure S1232.  Get High-res Image Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CORIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S5161.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CORIN MUTATED 0 9 1
CORIN WILD-TYPE 26 170 83
'CORIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.39

Table S5162.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CORIN MUTATED 2 5 2 0 1
CORIN WILD-TYPE 67 53 110 1 48
'CORIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S5163.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CORIN MUTATED 1 5 1
CORIN WILD-TYPE 17 93 94
'CORIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S5164.  Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CORIN MUTATED 0 3 3 1 0
CORIN WILD-TYPE 17 31 87 68 1
'ACSS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S5165.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ACSS2 MUTATED 0 0 9
ACSS2 WILD-TYPE 80 55 143

Figure S1233.  Get High-res Image Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACSS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S5166.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ACSS2 MUTATED 5 1 1
ACSS2 WILD-TYPE 116 36 85
'ACSS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5167.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ACSS2 MUTATED 6 0 2
ACSS2 WILD-TYPE 158 13 78
'ACSS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S5168.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ACSS2 MUTATED 0 6 0 2
ACSS2 WILD-TYPE 49 96 4 100
'ACSS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5169.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ACSS2 MUTATED 0 6 3
ACSS2 WILD-TYPE 26 173 81
'ACSS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.26

Table S5170.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ACSS2 MUTATED 0 4 2 0 3
ACSS2 WILD-TYPE 69 54 110 1 46
'ACSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.91

Table S5171.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ACSS2 MUTATED 0 4 2
ACSS2 WILD-TYPE 18 94 93
'ACSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5172.  Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ACSS2 MUTATED 0 1 3 2 0
ACSS2 WILD-TYPE 17 33 87 67 1
'CD1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S5173.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CD1E MUTATED 4 1 2
CD1E WILD-TYPE 76 54 150
'CD1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.93

Table S5174.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CD1E MUTATED 2 1 2
CD1E WILD-TYPE 119 36 84
'CD1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5175.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CD1E MUTATED 5 0 2
CD1E WILD-TYPE 159 13 78
'CD1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S5176.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CD1E MUTATED 3 2 0 2
CD1E WILD-TYPE 46 100 4 100
'CD1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.45

Table S5177.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CD1E MUTATED 2 4 1
CD1E WILD-TYPE 24 175 83
'CD1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.6

Table S5178.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CD1E MUTATED 3 2 1 0 1
CD1E WILD-TYPE 66 56 111 1 48
'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.49

Table S5179.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CD1E MUTATED 1 1 2
CD1E WILD-TYPE 17 97 93
'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.17

Table S5180.  Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CD1E MUTATED 2 0 0 2 0
CD1E WILD-TYPE 15 34 90 67 1

Figure S1234.  Get High-res Image Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SCN10A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S5181.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SCN10A MUTATED 5 3 20
SCN10A WILD-TYPE 75 52 132
'SCN10A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.67

Table S5182.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SCN10A MUTATED 14 4 6
SCN10A WILD-TYPE 107 33 80
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.41

Table S5183.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SCN10A MUTATED 16 3 6
SCN10A WILD-TYPE 148 10 74
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S5184.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SCN10A MUTATED 4 13 0 8
SCN10A WILD-TYPE 45 89 4 94
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S5185.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SCN10A MUTATED 2 20 6
SCN10A WILD-TYPE 24 159 78
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S5186.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SCN10A MUTATED 6 7 13 0 2
SCN10A WILD-TYPE 63 51 99 1 47
'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.66

Table S5187.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SCN10A MUTATED 2 12 7
SCN10A WILD-TYPE 16 86 88
'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.71

Table S5188.  Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SCN10A MUTATED 2 2 12 5 0
SCN10A WILD-TYPE 15 32 78 64 1
'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.31

Table S5189.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CBLN3 MUTATED 0 0 5
CBLN3 WILD-TYPE 80 55 147
'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.42

Table S5190.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CBLN3 MUTATED 4 0 0
CBLN3 WILD-TYPE 117 37 86
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S5191.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CBLN3 MUTATED 4 0 0
CBLN3 WILD-TYPE 160 13 80
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S5192.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CBLN3 MUTATED 0 4 0 0
CBLN3 WILD-TYPE 49 98 4 102
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S5193.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CBLN3 MUTATED 0 5 0
CBLN3 WILD-TYPE 26 174 84
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S5194.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CBLN3 MUTATED 0 3 2 0 0
CBLN3 WILD-TYPE 69 55 110 1 49
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S5195.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CBLN3 MUTATED 0 3 1
CBLN3 WILD-TYPE 18 95 94
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S5196.  Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CBLN3 MUTATED 0 2 2 0 0
CBLN3 WILD-TYPE 17 32 88 69 1
'DGKD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S5197.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DGKD MUTATED 1 0 5
DGKD WILD-TYPE 79 55 147
'DGKD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S5198.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DGKD MUTATED 4 0 1
DGKD WILD-TYPE 117 37 85
'DGKD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5199.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DGKD MUTATED 3 0 1
DGKD WILD-TYPE 161 13 79
'DGKD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.7

Table S5200.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DGKD MUTATED 0 3 0 1
DGKD WILD-TYPE 49 99 4 101
'DGKD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5201.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DGKD MUTATED 0 4 2
DGKD WILD-TYPE 26 175 82
'DGKD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.19

Table S5202.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DGKD MUTATED 1 4 0 0 1
DGKD WILD-TYPE 68 54 112 1 48

Figure S1235.  Get High-res Image Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5203.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DGKD MUTATED 0 3 2
DGKD WILD-TYPE 18 95 93
'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.22

Table S5204.  Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DGKD MUTATED 0 3 0 2 0
DGKD WILD-TYPE 17 31 90 67 1
'MAGI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S5205.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAGI2 MUTATED 4 5 19
MAGI2 WILD-TYPE 76 50 133
'MAGI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S5206.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAGI2 MUTATED 14 2 6
MAGI2 WILD-TYPE 107 35 80
'MAGI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S5207.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAGI2 MUTATED 18 2 4
MAGI2 WILD-TYPE 146 11 76
'MAGI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S5208.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAGI2 MUTATED 4 14 0 6
MAGI2 WILD-TYPE 45 88 4 96
'MAGI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.039

Table S5209.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAGI2 MUTATED 3 24 1
MAGI2 WILD-TYPE 23 155 83

Figure S1236.  Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.22

Table S5210.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAGI2 MUTATED 4 10 13 0 1
MAGI2 WILD-TYPE 65 48 99 1 48
'MAGI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00601 (Fisher's exact test), Q value = 0.077

Table S5211.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAGI2 MUTATED 3 12 2
MAGI2 WILD-TYPE 15 86 93

Figure S1237.  Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.2

Table S5212.  Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAGI2 MUTATED 3 4 9 1 0
MAGI2 WILD-TYPE 14 30 81 68 1

Figure S1238.  Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.24

Table S5213.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FIGNL1 MUTATED 0 1 8
FIGNL1 WILD-TYPE 80 54 144
'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S5214.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FIGNL1 MUTATED 6 0 1
FIGNL1 WILD-TYPE 115 37 85
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S5215.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FIGNL1 MUTATED 7 0 1
FIGNL1 WILD-TYPE 157 13 79
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.46

Table S5216.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FIGNL1 MUTATED 0 6 0 2
FIGNL1 WILD-TYPE 49 96 4 100
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S5217.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FIGNL1 MUTATED 0 8 1
FIGNL1 WILD-TYPE 26 171 83
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.13

Table S5218.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FIGNL1 MUTATED 0 6 2 0 1
FIGNL1 WILD-TYPE 69 52 110 1 48

Figure S1239.  Get High-res Image Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S5219.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FIGNL1 MUTATED 0 5 2
FIGNL1 WILD-TYPE 18 93 93
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S5220.  Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FIGNL1 MUTATED 0 3 3 1 0
FIGNL1 WILD-TYPE 17 31 87 68 1
'STK36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S5221.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
STK36 MUTATED 2 0 8
STK36 WILD-TYPE 78 55 144
'STK36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5222.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
STK36 MUTATED 4 1 2
STK36 WILD-TYPE 117 36 84
'STK36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S5223.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
STK36 MUTATED 7 1 2
STK36 WILD-TYPE 157 12 78
'STK36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.34

Table S5224.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
STK36 MUTATED 2 5 1 2
STK36 WILD-TYPE 47 97 3 100
'STK36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S5225.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
STK36 MUTATED 1 8 1
STK36 WILD-TYPE 25 171 83
'STK36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.64

Table S5226.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
STK36 MUTATED 2 3 5 0 0
STK36 WILD-TYPE 67 55 107 1 49
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.25

Table S5227.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
STK36 MUTATED 2 4 1
STK36 WILD-TYPE 16 94 94
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S5228.  Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
STK36 MUTATED 1 1 5 0 0
STK36 WILD-TYPE 16 33 85 69 1
'USP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.99

Table S5229.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
USP13 MUTATED 2 2 7
USP13 WILD-TYPE 78 53 145
'USP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S5230.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
USP13 MUTATED 3 2 1
USP13 WILD-TYPE 118 35 85
'USP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S5231.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
USP13 MUTATED 8 0 1
USP13 WILD-TYPE 156 13 79
'USP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S5232.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
USP13 MUTATED 1 7 0 1
USP13 WILD-TYPE 48 95 4 101
'USP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.49

Table S5233.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
USP13 MUTATED 1 9 1
USP13 WILD-TYPE 25 170 83
'USP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S5234.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
USP13 MUTATED 3 4 4 0 0
USP13 WILD-TYPE 66 54 108 1 49
'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S5235.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
USP13 MUTATED 1 3 2
USP13 WILD-TYPE 17 95 93
'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S5236.  Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
USP13 MUTATED 1 0 4 1 0
USP13 WILD-TYPE 16 34 86 68 1
'CALCRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.82

Table S5237.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CALCRL MUTATED 1 2 5
CALCRL WILD-TYPE 79 53 147
'CALCRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S5238.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CALCRL MUTATED 4 0 1
CALCRL WILD-TYPE 117 37 85
'CALCRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S5239.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CALCRL MUTATED 4 1 2
CALCRL WILD-TYPE 160 12 78
'CALCRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S5240.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CALCRL MUTATED 2 2 0 3
CALCRL WILD-TYPE 47 100 4 99
'CALCRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S5241.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CALCRL MUTATED 1 6 1
CALCRL WILD-TYPE 25 173 83
'CALCRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S5242.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CALCRL MUTATED 0 4 2 0 2
CALCRL WILD-TYPE 69 54 110 1 47
'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S5243.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CALCRL MUTATED 1 1 3
CALCRL WILD-TYPE 17 97 92
'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5244.  Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CALCRL MUTATED 0 1 2 2 0
CALCRL WILD-TYPE 17 33 88 67 1
'AFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S5245.  Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AFP MUTATED 0 0 3
AFP WILD-TYPE 80 55 149
'AFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5246.  Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AFP MUTATED 0 2 1
AFP WILD-TYPE 26 177 83
'AFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S5247.  Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AFP MUTATED 0 1 1 0 1
AFP WILD-TYPE 69 57 111 1 48
'DISP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S5248.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
DISP2 MUTATED 1 2 11
DISP2 WILD-TYPE 79 53 141
'DISP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.067

Table S5249.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
DISP2 MUTATED 13 0 1
DISP2 WILD-TYPE 108 37 85

Figure S1240.  Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DISP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S5250.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
DISP2 MUTATED 11 0 2
DISP2 WILD-TYPE 153 13 78
'DISP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.23

Table S5251.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
DISP2 MUTATED 1 10 0 2
DISP2 WILD-TYPE 48 92 4 100
'DISP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00373 (Fisher's exact test), Q value = 0.058

Table S5252.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
DISP2 MUTATED 0 15 0
DISP2 WILD-TYPE 26 164 84

Figure S1241.  Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.052

Table S5253.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
DISP2 MUTATED 1 9 5 0 0
DISP2 WILD-TYPE 68 49 107 1 49

Figure S1242.  Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.01

Table S5254.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
DISP2 MUTATED 0 13 0
DISP2 WILD-TYPE 18 85 95

Figure S1243.  Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00483 (Fisher's exact test), Q value = 0.067

Table S5255.  Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
DISP2 MUTATED 0 6 7 0 0
DISP2 WILD-TYPE 17 28 83 69 1

Figure S1244.  Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0089

Table S5256.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MGA MUTATED 0 3 21
MGA WILD-TYPE 80 52 131

Figure S1245.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00324 (Fisher's exact test), Q value = 0.054

Table S5257.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MGA MUTATED 17 0 3
MGA WILD-TYPE 104 37 83

Figure S1246.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.39

Table S5258.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MGA MUTATED 17 1 3
MGA WILD-TYPE 147 12 77
'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00686 (Fisher's exact test), Q value = 0.082

Table S5259.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MGA MUTATED 0 14 1 6
MGA WILD-TYPE 49 88 3 96

Figure S1247.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S5260.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MGA MUTATED 1 22 2
MGA WILD-TYPE 25 157 82

Figure S1248.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S5261.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MGA MUTATED 0 12 12 0 1
MGA WILD-TYPE 69 46 100 1 48

Figure S1249.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.02

Table S5262.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MGA MUTATED 1 15 1
MGA WILD-TYPE 17 83 94

Figure S1250.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.15

Table S5263.  Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MGA MUTATED 0 5 11 1 0
MGA WILD-TYPE 17 29 79 68 1

Figure S1251.  Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPP1R12C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S5264.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PPP1R12C MUTATED 0 0 5
PPP1R12C WILD-TYPE 80 55 147
'PPP1R12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.3

Table S5265.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PPP1R12C MUTATED 5 0 0
PPP1R12C WILD-TYPE 116 37 86
'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.55

Table S5266.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PPP1R12C MUTATED 5 0 0
PPP1R12C WILD-TYPE 159 13 80
'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.24

Table S5267.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PPP1R12C MUTATED 0 5 0 0
PPP1R12C WILD-TYPE 49 97 4 102
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S5268.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PPP1R12C MUTATED 0 5 0
PPP1R12C WILD-TYPE 26 174 84
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S5269.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PPP1R12C MUTATED 0 1 4 0 0
PPP1R12C WILD-TYPE 69 57 108 1 49
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.26

Table S5270.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PPP1R12C MUTATED 1 4 0
PPP1R12C WILD-TYPE 17 94 95
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S5271.  Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PPP1R12C MUTATED 0 2 3 0 0
PPP1R12C WILD-TYPE 17 32 87 69 1
'UNC50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.74

Table S5272.  Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
UNC50 MUTATED 3 0 0
UNC50 WILD-TYPE 161 13 80
'UNC50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.47

Table S5273.  Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
UNC50 MUTATED 0 3 0 0
UNC50 WILD-TYPE 49 99 4 102
'UNC50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S5274.  Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
UNC50 MUTATED 0 3 0
UNC50 WILD-TYPE 26 176 84
'UNC50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.15

Table S5275.  Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
UNC50 MUTATED 0 3 0 0 0
UNC50 WILD-TYPE 69 55 112 1 49

Figure S1252.  Get High-res Image Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CNGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S5276.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CNGA4 MUTATED 3 1 14
CNGA4 WILD-TYPE 77 54 138
'CNGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S5277.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CNGA4 MUTATED 10 2 3
CNGA4 WILD-TYPE 111 35 83
'CNGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.89

Table S5278.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CNGA4 MUTATED 9 1 4
CNGA4 WILD-TYPE 155 12 76
'CNGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.85

Table S5279.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CNGA4 MUTATED 3 7 0 4
CNGA4 WILD-TYPE 46 95 4 98
'CNGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.9

Table S5280.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CNGA4 MUTATED 1 13 4
CNGA4 WILD-TYPE 25 166 80
'CNGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S5281.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CNGA4 MUTATED 4 7 5 1 1
CNGA4 WILD-TYPE 65 51 107 0 48

Figure S1253.  Get High-res Image Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.84

Table S5282.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CNGA4 MUTATED 2 6 7
CNGA4 WILD-TYPE 16 92 88
'CNGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.22

Table S5283.  Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CNGA4 MUTATED 1 2 9 2 1
CNGA4 WILD-TYPE 16 32 81 67 0
'C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00451 (Fisher's exact test), Q value = 0.065

Table S5284.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C3 MUTATED 2 2 21
C3 WILD-TYPE 78 53 131

Figure S1254.  Get High-res Image Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S5285.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C3 MUTATED 17 3 3
C3 WILD-TYPE 104 34 83

Figure S1255.  Get High-res Image Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S5286.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C3 MUTATED 12 0 7
C3 WILD-TYPE 152 13 73
'C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S5287.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C3 MUTATED 1 10 0 8
C3 WILD-TYPE 48 92 4 94
'C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.4

Table S5288.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C3 MUTATED 0 19 6
C3 WILD-TYPE 26 160 78
'C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S5289.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C3 MUTATED 3 9 10 0 3
C3 WILD-TYPE 66 49 102 1 46
'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.23

Table S5290.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C3 MUTATED 2 15 5
C3 WILD-TYPE 16 83 90
'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S5291.  Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C3 MUTATED 0 6 12 4 0
C3 WILD-TYPE 17 28 78 65 1
'GPX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.37

Table S5292.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPX6 MUTATED 0 2 2
GPX6 WILD-TYPE 80 53 150
'GPX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S5293.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPX6 MUTATED 4 0 0
GPX6 WILD-TYPE 117 37 86
'GPX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S5294.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPX6 MUTATED 2 1 0
GPX6 WILD-TYPE 162 12 80
'GPX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S5295.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPX6 MUTATED 1 2 0 0
GPX6 WILD-TYPE 48 100 4 102
'GPX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S5296.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPX6 MUTATED 1 3 0
GPX6 WILD-TYPE 25 176 84
'GPX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00342 (Fisher's exact test), Q value = 0.056

Table S5297.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPX6 MUTATED 0 2 1 1 0
GPX6 WILD-TYPE 69 56 111 0 49

Figure S1256.  Get High-res Image Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S5298.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPX6 MUTATED 1 1 1
GPX6 WILD-TYPE 17 97 94
'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.1

Table S5299.  Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPX6 MUTATED 0 0 2 0 1
GPX6 WILD-TYPE 17 34 88 69 0

Figure S1257.  Get High-res Image Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.27

Table S5300.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KANK4 MUTATED 1 0 9
KANK4 WILD-TYPE 79 55 143
'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.25

Table S5301.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KANK4 MUTATED 6 2 0
KANK4 WILD-TYPE 115 35 86
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.27

Table S5302.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KANK4 MUTATED 9 0 0
KANK4 WILD-TYPE 155 13 80
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.042

Table S5303.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KANK4 MUTATED 0 9 0 0
KANK4 WILD-TYPE 49 93 4 102

Figure S1258.  Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.18

Table S5304.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KANK4 MUTATED 0 10 0
KANK4 WILD-TYPE 26 169 84

Figure S1259.  Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0077 (Fisher's exact test), Q value = 0.087

Table S5305.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KANK4 MUTATED 1 7 2 0 0
KANK4 WILD-TYPE 68 51 110 1 49

Figure S1260.  Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.27

Table S5306.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KANK4 MUTATED 0 7 1
KANK4 WILD-TYPE 18 91 94
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.51

Table S5307.  Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KANK4 MUTATED 0 3 4 1 0
KANK4 WILD-TYPE 17 31 86 68 1
'CASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S5308.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CASP1 MUTATED 2 0 2
CASP1 WILD-TYPE 78 55 150
'CASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S5309.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CASP1 MUTATED 2 1 1
CASP1 WILD-TYPE 119 36 85
'CASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5310.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CASP1 MUTATED 3 0 1
CASP1 WILD-TYPE 161 13 79
'CASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 0.94

Table S5311.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CASP1 MUTATED 1 2 0 1
CASP1 WILD-TYPE 48 100 4 101
'CASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S5312.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CASP1 MUTATED 0 4 0
CASP1 WILD-TYPE 26 175 84
'CASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S5313.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CASP1 MUTATED 1 2 1 0 0
CASP1 WILD-TYPE 68 56 111 1 49
'CASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S5314.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CASP1 MUTATED 1 3 0
CASP1 WILD-TYPE 17 95 95
'CASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.45

Table S5315.  Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CASP1 MUTATED 1 1 2 0 0
CASP1 WILD-TYPE 16 33 88 69 1
'ELL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.21

Table S5316.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ELL2 MUTATED 0 3 9
ELL2 WILD-TYPE 80 52 143

Figure S1261.  Get High-res Image Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.5

Table S5317.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ELL2 MUTATED 7 0 2
ELL2 WILD-TYPE 114 37 84
'ELL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S5318.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ELL2 MUTATED 8 1 2
ELL2 WILD-TYPE 156 12 78
'ELL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S5319.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ELL2 MUTATED 0 6 0 5
ELL2 WILD-TYPE 49 96 4 97
'ELL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.31

Table S5320.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ELL2 MUTATED 0 11 1
ELL2 WILD-TYPE 26 168 83
'ELL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.59

Table S5321.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ELL2 MUTATED 1 4 6 0 1
ELL2 WILD-TYPE 68 54 106 1 48
'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.21

Table S5322.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ELL2 MUTATED 0 8 1
ELL2 WILD-TYPE 18 90 94

Figure S1262.  Get High-res Image Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S5323.  Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ELL2 MUTATED 0 3 5 1 0
ELL2 WILD-TYPE 17 31 85 68 1
'PIK3C2G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 0.28

Table S5324.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PIK3C2G MUTATED 0 3 7
PIK3C2G WILD-TYPE 80 52 145
'PIK3C2G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S5325.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PIK3C2G MUTATED 6 0 2
PIK3C2G WILD-TYPE 115 37 84
'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S5326.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PIK3C2G MUTATED 6 1 2
PIK3C2G WILD-TYPE 158 12 78
'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.26

Table S5327.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PIK3C2G MUTATED 0 5 1 3
PIK3C2G WILD-TYPE 49 97 3 99
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S5328.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PIK3C2G MUTATED 0 9 1
PIK3C2G WILD-TYPE 26 170 83
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.25

Table S5329.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PIK3C2G MUTATED 0 3 7 0 0
PIK3C2G WILD-TYPE 69 55 105 1 49
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S5330.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PIK3C2G MUTATED 1 7 0
PIK3C2G WILD-TYPE 17 91 95

Figure S1263.  Get High-res Image Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.17

Table S5331.  Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PIK3C2G MUTATED 0 0 8 0 0
PIK3C2G WILD-TYPE 17 34 82 69 1

Figure S1264.  Get High-res Image Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.26

Table S5332.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0664 MUTATED 1 1 11
KIAA0664 WILD-TYPE 79 54 141
'KIAA0664 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S5333.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0664 MUTATED 8 1 2
KIAA0664 WILD-TYPE 113 36 84
'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S5334.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0664 MUTATED 5 1 4
KIAA0664 WILD-TYPE 159 12 76
'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.91

Table S5335.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0664 MUTATED 2 5 0 3
KIAA0664 WILD-TYPE 47 97 4 99
'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S5336.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0664 MUTATED 1 10 2
KIAA0664 WILD-TYPE 25 169 82
'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S5337.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0664 MUTATED 1 3 8 0 1
KIAA0664 WILD-TYPE 68 55 104 1 48
'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S5338.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0664 MUTATED 1 8 2
KIAA0664 WILD-TYPE 17 90 93
'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.68

Table S5339.  Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0664 MUTATED 1 1 7 2 0
KIAA0664 WILD-TYPE 16 33 83 67 1
'SOS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.099

Table S5340.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SOS2 MUTATED 3 0 16
SOS2 WILD-TYPE 77 55 136

Figure S1265.  Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.26

Table S5341.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SOS2 MUTATED 12 2 2
SOS2 WILD-TYPE 109 35 84
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.31

Table S5342.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SOS2 MUTATED 15 0 2
SOS2 WILD-TYPE 149 13 78
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S5343.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SOS2 MUTATED 2 13 0 2
SOS2 WILD-TYPE 47 89 4 100

Figure S1266.  Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S5344.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SOS2 MUTATED 1 14 4
SOS2 WILD-TYPE 25 165 80
'SOS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.12

Table S5345.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SOS2 MUTATED 2 10 6 0 1
SOS2 WILD-TYPE 67 48 106 1 48

Figure S1267.  Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S5346.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SOS2 MUTATED 0 8 4
SOS2 WILD-TYPE 18 90 91
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.59

Table S5347.  Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SOS2 MUTATED 0 3 7 2 0
SOS2 WILD-TYPE 17 31 83 67 1
'ATL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00312 (Fisher's exact test), Q value = 0.053

Table S5348.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ATL3 MUTATED 0 0 12
ATL3 WILD-TYPE 80 55 140

Figure S1268.  Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S5349.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ATL3 MUTATED 7 0 1
ATL3 WILD-TYPE 114 37 85
'ATL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5350.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ATL3 MUTATED 7 0 3
ATL3 WILD-TYPE 157 13 77
'ATL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.43

Table S5351.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ATL3 MUTATED 0 7 0 3
ATL3 WILD-TYPE 49 95 4 99
'ATL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5352.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ATL3 MUTATED 0 11 1
ATL3 WILD-TYPE 26 168 83
'ATL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0062 (Fisher's exact test), Q value = 0.078

Table S5353.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ATL3 MUTATED 0 7 5 0 0
ATL3 WILD-TYPE 69 51 107 1 49

Figure S1269.  Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ATL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S5354.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ATL3 MUTATED 0 6 1
ATL3 WILD-TYPE 18 92 94
'ATL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S5355.  Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ATL3 MUTATED 0 2 4 1 0
ATL3 WILD-TYPE 17 32 86 68 1
'PEG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.5

Table S5356.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PEG3 MUTATED 8 3 20
PEG3 WILD-TYPE 72 52 132
'PEG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.057

Table S5357.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PEG3 MUTATED 21 3 3
PEG3 WILD-TYPE 100 34 83

Figure S1270.  Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PEG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S5358.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PEG3 MUTATED 24 1 5
PEG3 WILD-TYPE 140 12 75
'PEG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S5359.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PEG3 MUTATED 4 18 0 8
PEG3 WILD-TYPE 45 84 4 94
'PEG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00881 (Fisher's exact test), Q value = 0.094

Table S5360.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PEG3 MUTATED 1 27 3
PEG3 WILD-TYPE 25 152 81

Figure S1271.  Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S5361.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PEG3 MUTATED 5 13 11 0 2
PEG3 WILD-TYPE 64 45 101 1 47

Figure S1272.  Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.19

Table S5362.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PEG3 MUTATED 1 17 6
PEG3 WILD-TYPE 17 81 89

Figure S1273.  Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.078

Table S5363.  Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PEG3 MUTATED 0 7 15 2 0
PEG3 WILD-TYPE 17 27 75 67 1

Figure S1274.  Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMARCAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.64

Table S5364.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SMARCAL1 MUTATED 3 1 9
SMARCAL1 WILD-TYPE 77 54 143
'SMARCAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.17

Table S5365.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SMARCAL1 MUTATED 8 2 0
SMARCAL1 WILD-TYPE 113 35 86

Figure S1275.  Get High-res Image Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 0.91

Table S5366.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SMARCAL1 MUTATED 7 0 2
SMARCAL1 WILD-TYPE 157 13 78
'SMARCAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.36

Table S5367.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SMARCAL1 MUTATED 0 7 0 2
SMARCAL1 WILD-TYPE 49 95 4 100
'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.7

Table S5368.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SMARCAL1 MUTATED 0 10 3
SMARCAL1 WILD-TYPE 26 169 81
'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S5369.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SMARCAL1 MUTATED 3 6 4 0 0
SMARCAL1 WILD-TYPE 66 52 108 1 49
'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.81

Table S5370.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SMARCAL1 MUTATED 0 6 4
SMARCAL1 WILD-TYPE 18 92 91
'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0795 (Fisher's exact test), Q value = 0.27

Table S5371.  Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SMARCAL1 MUTATED 0 5 2 3 0
SMARCAL1 WILD-TYPE 17 29 88 66 1
'THBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.34

Table S5372.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
THBS1 MUTATED 2 1 12
THBS1 WILD-TYPE 78 54 140
'THBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S5373.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
THBS1 MUTATED 11 1 1
THBS1 WILD-TYPE 110 36 85

Figure S1276.  Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.7

Table S5374.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
THBS1 MUTATED 11 1 3
THBS1 WILD-TYPE 153 12 77
'THBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.27

Table S5375.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
THBS1 MUTATED 0 10 0 5
THBS1 WILD-TYPE 49 92 4 97
'THBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.27

Table S5376.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
THBS1 MUTATED 2 12 1
THBS1 WILD-TYPE 24 167 83
'THBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5377.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
THBS1 MUTATED 2 6 7 0 0
THBS1 WILD-TYPE 67 52 105 1 49
'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.19

Table S5378.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
THBS1 MUTATED 0 10 2
THBS1 WILD-TYPE 18 88 93

Figure S1277.  Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5379.  Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
THBS1 MUTATED 0 3 8 1 0
THBS1 WILD-TYPE 17 31 82 68 1
'PUS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S5380.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PUS7 MUTATED 0 0 10
PUS7 WILD-TYPE 80 55 142

Figure S1278.  Get High-res Image Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PUS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S5381.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PUS7 MUTATED 6 0 2
PUS7 WILD-TYPE 115 37 84
'PUS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.73

Table S5382.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PUS7 MUTATED 6 0 1
PUS7 WILD-TYPE 158 13 79
'PUS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5383.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PUS7 MUTATED 0 6 0 1
PUS7 WILD-TYPE 49 96 4 101
'PUS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.46

Table S5384.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PUS7 MUTATED 0 9 1
PUS7 WILD-TYPE 26 170 83
'PUS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S5385.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PUS7 MUTATED 0 2 7 0 1
PUS7 WILD-TYPE 69 56 105 1 48
'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S5386.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PUS7 MUTATED 1 4 1
PUS7 WILD-TYPE 17 94 94
'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.46

Table S5387.  Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PUS7 MUTATED 0 3 2 1 0
PUS7 WILD-TYPE 17 31 88 68 1
'RALGDS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.034

Table S5388.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RALGDS MUTATED 0 0 13
RALGDS WILD-TYPE 80 55 139

Figure S1279.  Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RALGDS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.46

Table S5389.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RALGDS MUTATED 8 0 3
RALGDS WILD-TYPE 113 37 83
'RALGDS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.95

Table S5390.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RALGDS MUTATED 9 0 3
RALGDS WILD-TYPE 155 13 77
'RALGDS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.25

Table S5391.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RALGDS MUTATED 0 9 0 3
RALGDS WILD-TYPE 49 93 4 99
'RALGDS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.27

Table S5392.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RALGDS MUTATED 0 12 1
RALGDS WILD-TYPE 26 167 83
'RALGDS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.2

Table S5393.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RALGDS MUTATED 0 6 6 0 1
RALGDS WILD-TYPE 69 52 106 1 48

Figure S1280.  Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RALGDS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.27

Table S5394.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RALGDS MUTATED 0 7 1
RALGDS WILD-TYPE 18 91 94
'RALGDS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S5395.  Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RALGDS MUTATED 0 2 5 1 0
RALGDS WILD-TYPE 17 32 85 68 1
'CNTROB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S5396.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CNTROB MUTATED 0 1 5
CNTROB WILD-TYPE 80 54 147
'CNTROB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S5397.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CNTROB MUTATED 5 0 0
CNTROB WILD-TYPE 116 37 86
'CNTROB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.45

Table S5398.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CNTROB MUTATED 6 0 0
CNTROB WILD-TYPE 158 13 80
'CNTROB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.73

Table S5399.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CNTROB MUTATED 0 4 0 2
CNTROB WILD-TYPE 49 98 4 100
'CNTROB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.51

Table S5400.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CNTROB MUTATED 0 6 0
CNTROB WILD-TYPE 26 173 84
'CNTROB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.015

Table S5401.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CNTROB MUTATED 0 6 0 0 0
CNTROB WILD-TYPE 69 52 112 1 49

Figure S1281.  Get High-res Image Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CNTROB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.49

Table S5402.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CNTROB MUTATED 1 3 1
CNTROB WILD-TYPE 17 95 94
'CNTROB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S5403.  Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CNTROB MUTATED 0 2 3 0 0
CNTROB WILD-TYPE 17 32 87 69 1
'PFAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.3

Table S5404.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PFAS MUTATED 1 0 8
PFAS WILD-TYPE 79 55 144
'PFAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S5405.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PFAS MUTATED 6 1 1
PFAS WILD-TYPE 115 36 85
'PFAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5406.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PFAS MUTATED 5 0 2
PFAS WILD-TYPE 159 13 78
'PFAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S5407.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PFAS MUTATED 0 5 0 2
PFAS WILD-TYPE 49 97 4 100
'PFAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.87

Table S5408.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PFAS MUTATED 0 7 2
PFAS WILD-TYPE 26 172 82
'PFAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5409.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PFAS MUTATED 1 5 2 0 1
PFAS WILD-TYPE 68 53 110 1 48
'PFAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.52

Table S5410.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PFAS MUTATED 0 6 2
PFAS WILD-TYPE 18 92 93
'PFAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.85

Table S5411.  Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PFAS MUTATED 0 2 4 2 0
PFAS WILD-TYPE 17 32 86 67 1
'TCF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.12

Table S5412.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TCF7 MUTATED 0 0 9
TCF7 WILD-TYPE 80 55 143

Figure S1282.  Get High-res Image Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S5413.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TCF7 MUTATED 6 0 2
TCF7 WILD-TYPE 115 37 84
'TCF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.29

Table S5414.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TCF7 MUTATED 6 1 0
TCF7 WILD-TYPE 158 12 80
'TCF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5415.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TCF7 MUTATED 0 6 0 1
TCF7 WILD-TYPE 49 96 4 101
'TCF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.54

Table S5416.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TCF7 MUTATED 0 8 1
TCF7 WILD-TYPE 26 171 83
'TCF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.84

Table S5417.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TCF7 MUTATED 1 3 4 0 1
TCF7 WILD-TYPE 68 55 108 1 48
'TCF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S5418.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TCF7 MUTATED 1 4 2
TCF7 WILD-TYPE 17 94 93
'TCF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S5419.  Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TCF7 MUTATED 0 2 4 1 0
TCF7 WILD-TYPE 17 32 86 68 1
'GPATCH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.013

Table S5420.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
GPATCH8 MUTATED 0 3 20
GPATCH8 WILD-TYPE 80 52 132

Figure S1283.  Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPATCH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.39

Table S5421.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
GPATCH8 MUTATED 14 1 5
GPATCH8 WILD-TYPE 107 36 81
'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.6

Table S5422.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
GPATCH8 MUTATED 13 1 3
GPATCH8 WILD-TYPE 151 12 77
'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.26

Table S5423.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
GPATCH8 MUTATED 0 11 0 6
GPATCH8 WILD-TYPE 49 91 4 96
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.17

Table S5424.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
GPATCH8 MUTATED 0 20 3
GPATCH8 WILD-TYPE 26 159 81

Figure S1284.  Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.022

Table S5425.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
GPATCH8 MUTATED 1 12 9 0 1
GPATCH8 WILD-TYPE 68 46 103 1 48

Figure S1285.  Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.19

Table S5426.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
GPATCH8 MUTATED 0 13 4
GPATCH8 WILD-TYPE 18 85 91

Figure S1286.  Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.23

Table S5427.  Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
GPATCH8 MUTATED 0 7 7 3 0
GPATCH8 WILD-TYPE 17 27 83 66 1
'PSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S5428.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PSD MUTATED 1 1 14
PSD WILD-TYPE 79 54 138

Figure S1287.  Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.22

Table S5429.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PSD MUTATED 12 0 3
PSD WILD-TYPE 109 37 83
'PSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S5430.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PSD MUTATED 13 0 2
PSD WILD-TYPE 151 13 78
'PSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.19

Table S5431.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PSD MUTATED 0 11 0 4
PSD WILD-TYPE 49 91 4 98

Figure S1288.  Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.26

Table S5432.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PSD MUTATED 1 14 1
PSD WILD-TYPE 25 165 83
'PSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.17

Table S5433.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PSD MUTATED 0 5 10 0 1
PSD WILD-TYPE 69 53 102 1 48

Figure S1289.  Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.22

Table S5434.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PSD MUTATED 1 8 1
PSD WILD-TYPE 17 90 94
'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S5435.  Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PSD MUTATED 0 2 7 1 0
PSD WILD-TYPE 17 32 83 68 1
'MMEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S5436.  Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MMEL1 MUTATED 0 0 6
MMEL1 WILD-TYPE 80 55 146
'MMEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.57

Table S5437.  Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MMEL1 MUTATED 3 0 0
MMEL1 WILD-TYPE 118 37 86
'MMEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S5438.  Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MMEL1 MUTATED 4 0 0
MMEL1 WILD-TYPE 160 13 80
'MMEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S5439.  Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MMEL1 MUTATED 0 4 0 0
MMEL1 WILD-TYPE 49 98 4 102
'MMEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S5440.  Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MMEL1 MUTATED 0 6 0
MMEL1 WILD-TYPE 26 173 84
'MMEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.25

Table S5441.  Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MMEL1 MUTATED 0 4 2 0 0
MMEL1 WILD-TYPE 69 54 110 1 49
'OSBPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5442.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OSBPL2 MUTATED 2 1 4
OSBPL2 WILD-TYPE 78 54 148
'OSBPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S5443.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OSBPL2 MUTATED 2 1 1
OSBPL2 WILD-TYPE 119 36 85
'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.85

Table S5444.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OSBPL2 MUTATED 3 0 2
OSBPL2 WILD-TYPE 161 13 78
'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S5445.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OSBPL2 MUTATED 1 1 0 3
OSBPL2 WILD-TYPE 48 101 4 99
'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.2

Table S5446.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OSBPL2 MUTATED 2 5 0
OSBPL2 WILD-TYPE 24 174 84

Figure S1290.  Get High-res Image Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00829 (Fisher's exact test), Q value = 0.09

Table S5447.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OSBPL2 MUTATED 2 5 0 0 0
OSBPL2 WILD-TYPE 67 53 112 1 49

Figure S1291.  Get High-res Image Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S5448.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OSBPL2 MUTATED 1 2 1
OSBPL2 WILD-TYPE 17 96 94
'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.52

Table S5449.  Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OSBPL2 MUTATED 0 2 1 1 0
OSBPL2 WILD-TYPE 17 32 89 68 1
'TOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S5450.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TOX MUTATED 3 0 6
TOX WILD-TYPE 77 55 146
'TOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S5451.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TOX MUTATED 5 2 1
TOX WILD-TYPE 116 35 85
'TOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5452.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TOX MUTATED 6 0 2
TOX WILD-TYPE 158 13 78
'TOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.75

Table S5453.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TOX MUTATED 1 5 0 2
TOX WILD-TYPE 48 97 4 100
'TOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.46

Table S5454.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TOX MUTATED 2 4 3
TOX WILD-TYPE 24 175 81
'TOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S5455.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TOX MUTATED 2 2 3 0 2
TOX WILD-TYPE 67 56 109 1 47
'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S5456.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TOX MUTATED 0 5 2
TOX WILD-TYPE 18 93 93
'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S5457.  Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TOX MUTATED 0 3 2 2 0
TOX WILD-TYPE 17 31 88 67 1
'ROCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.49

Table S5458.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ROCK1 MUTATED 3 1 11
ROCK1 WILD-TYPE 77 54 141
'ROCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.18

Table S5459.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ROCK1 MUTATED 9 0 1
ROCK1 WILD-TYPE 112 37 85

Figure S1292.  Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.25

Table S5460.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ROCK1 MUTATED 13 0 1
ROCK1 WILD-TYPE 151 13 79
'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.19

Table S5461.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ROCK1 MUTATED 1 11 0 2
ROCK1 WILD-TYPE 48 91 4 100

Figure S1293.  Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.25

Table S5462.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ROCK1 MUTATED 1 14 1
ROCK1 WILD-TYPE 25 165 83
'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.1

Table S5463.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ROCK1 MUTATED 1 9 5 0 1
ROCK1 WILD-TYPE 68 49 107 1 48

Figure S1294.  Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S5464.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ROCK1 MUTATED 1 6 1
ROCK1 WILD-TYPE 17 92 94
'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S5465.  Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ROCK1 MUTATED 0 4 3 1 0
ROCK1 WILD-TYPE 17 30 87 68 1
'LRP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.041

Table S5466.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LRP12 MUTATED 1 2 20
LRP12 WILD-TYPE 79 53 132

Figure S1295.  Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.025

Table S5467.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LRP12 MUTATED 17 0 2
LRP12 WILD-TYPE 104 37 84

Figure S1296.  Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S5468.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LRP12 MUTATED 14 1 3
LRP12 WILD-TYPE 150 12 77
'LRP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5469.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LRP12 MUTATED 1 12 0 5
LRP12 WILD-TYPE 48 90 4 97
'LRP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.008

Table S5470.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LRP12 MUTATED 0 23 0
LRP12 WILD-TYPE 26 156 84

Figure S1297.  Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00513 (Fisher's exact test), Q value = 0.07

Table S5471.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LRP12 MUTATED 4 11 8 0 0
LRP12 WILD-TYPE 65 47 104 1 49

Figure S1298.  Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.025

Table S5472.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LRP12 MUTATED 2 14 1
LRP12 WILD-TYPE 16 84 94

Figure S1299.  Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.022

Table S5473.  Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LRP12 MUTATED 0 9 7 1 0
LRP12 WILD-TYPE 17 25 83 68 1

Figure S1300.  Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S5474.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
C19ORF70 MUTATED 0 1 5
C19ORF70 WILD-TYPE 80 54 147
'C19ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.3

Table S5475.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
C19ORF70 MUTATED 5 0 0
C19ORF70 WILD-TYPE 116 37 86
'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S5476.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
C19ORF70 MUTATED 5 0 0
C19ORF70 WILD-TYPE 159 13 80
'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 0.24

Table S5477.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
C19ORF70 MUTATED 0 5 0 0
C19ORF70 WILD-TYPE 49 97 4 102
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S5478.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
C19ORF70 MUTATED 0 6 0
C19ORF70 WILD-TYPE 26 173 84
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.25

Table S5479.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
C19ORF70 MUTATED 0 4 2 0 0
C19ORF70 WILD-TYPE 69 54 110 1 49
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.31

Table S5480.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
C19ORF70 MUTATED 0 5 0
C19ORF70 WILD-TYPE 18 93 95
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.27

Table S5481.  Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
C19ORF70 MUTATED 0 3 2 0 0
C19ORF70 WILD-TYPE 17 31 88 69 1
'KIAA1217 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S5482.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA1217 MUTATED 3 2 13
KIAA1217 WILD-TYPE 77 53 139
'KIAA1217 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.23

Table S5483.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA1217 MUTATED 13 2 2
KIAA1217 WILD-TYPE 108 35 84
'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5484.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA1217 MUTATED 11 1 1
KIAA1217 WILD-TYPE 153 12 79
'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.1

Table S5485.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA1217 MUTATED 0 11 0 2
KIAA1217 WILD-TYPE 49 91 4 100

Figure S1301.  Get High-res Image Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 0.29

Table S5486.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA1217 MUTATED 1 16 2
KIAA1217 WILD-TYPE 25 163 82
'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.23

Table S5487.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA1217 MUTATED 3 9 6 0 1
KIAA1217 WILD-TYPE 66 49 106 1 48
'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.38

Table S5488.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA1217 MUTATED 0 10 4
KIAA1217 WILD-TYPE 18 88 91
'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S5489.  Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA1217 MUTATED 0 3 8 3 0
KIAA1217 WILD-TYPE 17 31 82 66 1
'CENPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S5490.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CENPN MUTATED 0 0 4
CENPN WILD-TYPE 80 55 148
'CENPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5491.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CENPN MUTATED 2 0 2
CENPN WILD-TYPE 119 37 84
'CENPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S5492.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CENPN MUTATED 2 0 2
CENPN WILD-TYPE 162 13 78
'CENPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5493.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CENPN MUTATED 0 2 0 2
CENPN WILD-TYPE 49 100 4 100
'CENPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S5494.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CENPN MUTATED 0 4 0
CENPN WILD-TYPE 26 175 84
'CENPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S5495.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CENPN MUTATED 0 0 4 0 0
CENPN WILD-TYPE 69 58 108 1 49
'CENPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S5496.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CENPN MUTATED 1 3 0
CENPN WILD-TYPE 17 95 95
'CENPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.48

Table S5497.  Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CENPN MUTATED 0 0 4 0 0
CENPN WILD-TYPE 17 34 86 69 1
'MAN2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S5498.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MAN2B1 MUTATED 1 1 14
MAN2B1 WILD-TYPE 79 54 138

Figure S1302.  Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAN2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S5499.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MAN2B1 MUTATED 11 0 1
MAN2B1 WILD-TYPE 110 37 85

Figure S1303.  Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAN2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.48

Table S5500.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MAN2B1 MUTATED 12 0 2
MAN2B1 WILD-TYPE 152 13 78
'MAN2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.15

Table S5501.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MAN2B1 MUTATED 0 11 0 3
MAN2B1 WILD-TYPE 49 91 4 99

Figure S1304.  Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.17

Table S5502.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MAN2B1 MUTATED 0 15 1
MAN2B1 WILD-TYPE 26 164 83

Figure S1305.  Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.018

Table S5503.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MAN2B1 MUTATED 0 10 5 0 1
MAN2B1 WILD-TYPE 69 48 107 1 48

Figure S1306.  Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.44

Table S5504.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MAN2B1 MUTATED 0 8 3
MAN2B1 WILD-TYPE 18 90 92
'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S5505.  Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MAN2B1 MUTATED 0 4 6 1 0
MAN2B1 WILD-TYPE 17 30 84 68 1
'KIAA0226 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.23

Table S5506.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KIAA0226 MUTATED 0 2 9
KIAA0226 WILD-TYPE 80 53 143
'KIAA0226 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.46

Table S5507.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KIAA0226 MUTATED 8 0 3
KIAA0226 WILD-TYPE 113 37 83
'KIAA0226 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.94

Table S5508.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KIAA0226 MUTATED 7 0 4
KIAA0226 WILD-TYPE 157 13 76
'KIAA0226 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.48

Table S5509.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KIAA0226 MUTATED 0 7 0 4
KIAA0226 WILD-TYPE 49 95 4 98
'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5510.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KIAA0226 MUTATED 0 11 1
KIAA0226 WILD-TYPE 26 168 83
'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S5511.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KIAA0226 MUTATED 1 7 4 0 0
KIAA0226 WILD-TYPE 68 51 108 1 49

Figure S1307.  Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.14

Table S5512.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KIAA0226 MUTATED 0 9 1
KIAA0226 WILD-TYPE 18 89 94

Figure S1308.  Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.25

Table S5513.  Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KIAA0226 MUTATED 0 5 4 1 0
KIAA0226 WILD-TYPE 17 29 86 68 1
'SP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.6

Table S5514.  Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SP6 MUTATED 0 0 3
SP6 WILD-TYPE 80 55 149
'SP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.57

Table S5515.  Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SP6 MUTATED 3 0 0
SP6 WILD-TYPE 118 37 86
'SP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S5516.  Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SP6 MUTATED 0 3 0
SP6 WILD-TYPE 26 176 84
'SP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.47

Table S5517.  Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SP6 MUTATED 0 2 1 0 0
SP6 WILD-TYPE 69 56 111 1 49
'SP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.52

Table S5518.  Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SP6 MUTATED 0 3 0
SP6 WILD-TYPE 18 95 95
'SP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.69

Table S5519.  Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SP6 MUTATED 0 1 2 0 0
SP6 WILD-TYPE 17 33 88 69 1
'CHST9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.3

Table S5520.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CHST9 MUTATED 0 0 6
CHST9 WILD-TYPE 80 55 146
'CHST9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.57

Table S5521.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CHST9 MUTATED 3 0 0
CHST9 WILD-TYPE 118 37 86
'CHST9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S5522.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CHST9 MUTATED 2 0 3
CHST9 WILD-TYPE 162 13 77
'CHST9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 0.94

Table S5523.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CHST9 MUTATED 0 2 0 3
CHST9 WILD-TYPE 49 100 4 99
'CHST9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.51

Table S5524.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CHST9 MUTATED 0 6 0
CHST9 WILD-TYPE 26 173 84
'CHST9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.84

Table S5525.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CHST9 MUTATED 1 2 3 0 0
CHST9 WILD-TYPE 68 56 109 1 49
'CHST9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.32

Table S5526.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CHST9 MUTATED 1 2 0
CHST9 WILD-TYPE 17 96 95
'CHST9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S5527.  Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CHST9 MUTATED 0 0 3 0 0
CHST9 WILD-TYPE 17 34 87 69 1
'ETV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S5528.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ETV1 MUTATED 3 0 7
ETV1 WILD-TYPE 77 55 145
'ETV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.41

Table S5529.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ETV1 MUTATED 7 1 1
ETV1 WILD-TYPE 114 36 85
'ETV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.73

Table S5530.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ETV1 MUTATED 6 0 1
ETV1 WILD-TYPE 158 13 79
'ETV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.5

Table S5531.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ETV1 MUTATED 1 5 0 1
ETV1 WILD-TYPE 48 97 4 101
'ETV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.28

Table S5532.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ETV1 MUTATED 1 9 0
ETV1 WILD-TYPE 25 170 84
'ETV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S5533.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ETV1 MUTATED 3 4 3 0 0
ETV1 WILD-TYPE 66 54 109 1 49
'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.1

Table S5534.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ETV1 MUTATED 1 8 0
ETV1 WILD-TYPE 17 90 95

Figure S1309.  Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.21

Table S5535.  Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ETV1 MUTATED 1 4 4 0 0
ETV1 WILD-TYPE 16 30 86 69 1

Figure S1310.  Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.12

Table S5536.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NOL6 MUTATED 2 0 14
NOL6 WILD-TYPE 78 55 138

Figure S1311.  Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.15

Table S5537.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NOL6 MUTATED 12 0 2
NOL6 WILD-TYPE 109 37 84

Figure S1312.  Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S5538.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NOL6 MUTATED 12 0 4
NOL6 WILD-TYPE 152 13 76
'NOL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.14

Table S5539.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NOL6 MUTATED 0 12 0 4
NOL6 WILD-TYPE 49 90 4 98

Figure S1313.  Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.26

Table S5540.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NOL6 MUTATED 0 15 2
NOL6 WILD-TYPE 26 164 82
'NOL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.015

Table S5541.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NOL6 MUTATED 2 11 2 0 2
NOL6 WILD-TYPE 67 47 110 1 47

Figure S1314.  Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.42

Table S5542.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NOL6 MUTATED 1 9 3
NOL6 WILD-TYPE 17 89 92
'NOL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S5543.  Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NOL6 MUTATED 0 3 8 2 0
NOL6 WILD-TYPE 17 31 82 67 1
'TAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S5544.  Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TAC4 MUTATED 0 1 2
TAC4 WILD-TYPE 80 54 150
'TAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5545.  Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TAC4 MUTATED 2 0 1
TAC4 WILD-TYPE 119 37 85
'TAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.38

Table S5546.  Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TAC4 MUTATED 2 1 0
TAC4 WILD-TYPE 162 12 80
'TAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5547.  Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TAC4 MUTATED 0 2 0 1
TAC4 WILD-TYPE 49 100 4 101
'TAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S5548.  Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TAC4 MUTATED 0 3 0
TAC4 WILD-TYPE 26 176 84
'TAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.47

Table S5549.  Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TAC4 MUTATED 0 2 1 0 0
TAC4 WILD-TYPE 69 56 111 1 49
'RNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.17

Table S5550.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RNMT MUTATED 0 0 8
RNMT WILD-TYPE 80 55 144

Figure S1315.  Get High-res Image Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.79

Table S5551.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RNMT MUTATED 5 0 2
RNMT WILD-TYPE 116 37 84
'RNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S5552.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RNMT MUTATED 5 1 2
RNMT WILD-TYPE 159 12 78
'RNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S5553.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RNMT MUTATED 0 4 0 4
RNMT WILD-TYPE 49 98 4 98
'RNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.28

Table S5554.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RNMT MUTATED 0 8 0
RNMT WILD-TYPE 26 171 84
'RNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S5555.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RNMT MUTATED 0 3 5 0 0
RNMT WILD-TYPE 69 55 107 1 49
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S5556.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RNMT MUTATED 1 5 1
RNMT WILD-TYPE 17 93 94
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.25

Table S5557.  Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RNMT MUTATED 0 0 7 0 0
RNMT WILD-TYPE 17 34 83 69 1
'HOOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.3

Table S5558.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HOOK1 MUTATED 0 0 6
HOOK1 WILD-TYPE 80 55 146
'HOOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S5559.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HOOK1 MUTATED 4 0 1
HOOK1 WILD-TYPE 117 37 85
'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S5560.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HOOK1 MUTATED 4 1 0
HOOK1 WILD-TYPE 160 12 80
'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00772 (Fisher's exact test), Q value = 0.087

Table S5561.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HOOK1 MUTATED 0 4 1 0
HOOK1 WILD-TYPE 49 98 3 102

Figure S1316.  Get High-res Image Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.91

Table S5562.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HOOK1 MUTATED 0 5 1
HOOK1 WILD-TYPE 26 174 83
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.37

Table S5563.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HOOK1 MUTATED 0 3 3 0 0
HOOK1 WILD-TYPE 69 55 109 1 49
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S5564.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HOOK1 MUTATED 0 3 1
HOOK1 WILD-TYPE 18 95 94
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S5565.  Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HOOK1 MUTATED 0 2 2 0 0
HOOK1 WILD-TYPE 17 32 88 69 1
'CCDC25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S5566.  Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CCDC25 MUTATED 0 0 3
CCDC25 WILD-TYPE 80 55 149
'CCDC25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.74

Table S5567.  Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CCDC25 MUTATED 3 0 0
CCDC25 WILD-TYPE 161 13 80
'CCDC25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.47

Table S5568.  Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CCDC25 MUTATED 0 3 0 0
CCDC25 WILD-TYPE 49 99 4 102
'CCDC25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S5569.  Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CCDC25 MUTATED 0 3 0
CCDC25 WILD-TYPE 26 176 84
'CCDC25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S5570.  Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CCDC25 MUTATED 0 3 0 0 0
CCDC25 WILD-TYPE 69 55 112 1 49

Figure S1317.  Get High-res Image Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IQSEC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S5571.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IQSEC2 MUTATED 1 0 11
IQSEC2 WILD-TYPE 79 55 141

Figure S1318.  Get High-res Image Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IQSEC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.46

Table S5572.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IQSEC2 MUTATED 8 0 3
IQSEC2 WILD-TYPE 113 37 83
'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.93

Table S5573.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IQSEC2 MUTATED 6 0 4
IQSEC2 WILD-TYPE 158 13 76
'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S5574.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IQSEC2 MUTATED 0 6 0 4
IQSEC2 WILD-TYPE 49 96 4 98
'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.31

Table S5575.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IQSEC2 MUTATED 0 11 1
IQSEC2 WILD-TYPE 26 168 83
'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.19

Table S5576.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IQSEC2 MUTATED 1 7 3 0 1
IQSEC2 WILD-TYPE 68 51 109 1 48

Figure S1319.  Get High-res Image Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S5577.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IQSEC2 MUTATED 0 9 1
IQSEC2 WILD-TYPE 18 89 94

Figure S1320.  Get High-res Image Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.44

Table S5578.  Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IQSEC2 MUTATED 0 3 6 1 0
IQSEC2 WILD-TYPE 17 31 84 68 1
'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.032

Table S5579.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
IBTK MUTATED 1 0 16
IBTK WILD-TYPE 79 55 136

Figure S1321.  Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.25

Table S5580.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
IBTK MUTATED 10 0 2
IBTK WILD-TYPE 111 37 84
'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S5581.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
IBTK MUTATED 9 1 3
IBTK WILD-TYPE 155 12 77
'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.41

Table S5582.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
IBTK MUTATED 0 8 0 5
IBTK WILD-TYPE 49 94 4 97
'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.37

Table S5583.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
IBTK MUTATED 0 15 3
IBTK WILD-TYPE 26 164 81
'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.15

Table S5584.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
IBTK MUTATED 1 9 6 0 2
IBTK WILD-TYPE 68 49 106 1 47

Figure S1322.  Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.79

Table S5585.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
IBTK MUTATED 1 7 4
IBTK WILD-TYPE 17 91 91
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S5586.  Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
IBTK MUTATED 0 3 6 3 0
IBTK WILD-TYPE 17 31 84 66 1
'TDRD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S5587.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
TDRD3 MUTATED 2 1 8
TDRD3 WILD-TYPE 78 54 144
'TDRD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S5588.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
TDRD3 MUTATED 6 2 1
TDRD3 WILD-TYPE 115 35 85
'TDRD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S5589.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
TDRD3 MUTATED 8 0 2
TDRD3 WILD-TYPE 156 13 78
'TDRD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S5590.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
TDRD3 MUTATED 1 7 0 2
TDRD3 WILD-TYPE 48 95 4 100
'TDRD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5591.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
TDRD3 MUTATED 1 7 3
TDRD3 WILD-TYPE 25 172 81
'TDRD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.73

Table S5592.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
TDRD3 MUTATED 4 3 3 0 1
TDRD3 WILD-TYPE 65 55 109 1 48
'TDRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S5593.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
TDRD3 MUTATED 2 3 3
TDRD3 WILD-TYPE 16 95 92
'TDRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S5594.  Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
TDRD3 MUTATED 1 2 2 3 0
TDRD3 WILD-TYPE 16 32 88 66 1
'HS6ST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S5595.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HS6ST2 MUTATED 0 1 6
HS6ST2 WILD-TYPE 80 54 146
'HS6ST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.42

Table S5596.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HS6ST2 MUTATED 4 0 0
HS6ST2 WILD-TYPE 117 37 86
'HS6ST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.36

Table S5597.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HS6ST2 MUTATED 7 0 0
HS6ST2 WILD-TYPE 157 13 80
'HS6ST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S5598.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HS6ST2 MUTATED 0 7 0 0
HS6ST2 WILD-TYPE 49 95 4 102

Figure S1323.  Get High-res Image Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S5599.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HS6ST2 MUTATED 0 7 0
HS6ST2 WILD-TYPE 26 172 84
'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.27

Table S5600.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HS6ST2 MUTATED 0 4 3 0 0
HS6ST2 WILD-TYPE 69 54 109 1 49
'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.39

Table S5601.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HS6ST2 MUTATED 0 4 0
HS6ST2 WILD-TYPE 18 94 95
'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S5602.  Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HS6ST2 MUTATED 0 1 3 0 0
HS6ST2 WILD-TYPE 17 33 87 69 1
'EPB41L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.17

Table S5603.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EPB41L5 MUTATED 0 0 8
EPB41L5 WILD-TYPE 80 55 144

Figure S1324.  Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB41L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.26

Table S5604.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EPB41L5 MUTATED 6 1 0
EPB41L5 WILD-TYPE 115 36 86
'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.36

Table S5605.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EPB41L5 MUTATED 7 0 0
EPB41L5 WILD-TYPE 157 13 80
'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S5606.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EPB41L5 MUTATED 0 7 0 0
EPB41L5 WILD-TYPE 49 95 4 102

Figure S1325.  Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.28

Table S5607.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EPB41L5 MUTATED 0 8 0
EPB41L5 WILD-TYPE 26 171 84
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.19

Table S5608.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EPB41L5 MUTATED 0 5 3 0 0
EPB41L5 WILD-TYPE 69 53 109 1 49

Figure S1326.  Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.19

Table S5609.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EPB41L5 MUTATED 1 6 0
EPB41L5 WILD-TYPE 17 92 95

Figure S1327.  Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5610.  Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EPB41L5 MUTATED 0 2 5 0 0
EPB41L5 WILD-TYPE 17 32 85 69 1
'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.23

Table S5611.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ARID5B MUTATED 0 2 9
ARID5B WILD-TYPE 80 53 143
'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S5612.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ARID5B MUTATED 6 0 1
ARID5B WILD-TYPE 115 37 85
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5613.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ARID5B MUTATED 8 0 3
ARID5B WILD-TYPE 156 13 77
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S5614.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ARID5B MUTATED 1 7 0 3
ARID5B WILD-TYPE 48 95 4 99
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S5615.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ARID5B MUTATED 0 11 0
ARID5B WILD-TYPE 26 168 84

Figure S1328.  Get High-res Image Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S5616.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ARID5B MUTATED 1 5 5 0 0
ARID5B WILD-TYPE 68 53 107 1 49
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.15

Table S5617.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ARID5B MUTATED 0 7 0
ARID5B WILD-TYPE 18 91 95

Figure S1329.  Get High-res Image Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S5618.  Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ARID5B MUTATED 0 3 4 0 0
ARID5B WILD-TYPE 17 31 86 69 1
'HECA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00351 (Fisher's exact test), Q value = 0.057

Table S5619.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HECA MUTATED 0 0 12
HECA WILD-TYPE 80 55 140

Figure S1330.  Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HECA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S5620.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HECA MUTATED 7 0 3
HECA WILD-TYPE 114 37 83
'HECA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5621.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HECA MUTATED 8 0 3
HECA WILD-TYPE 156 13 77
'HECA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S5622.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HECA MUTATED 0 8 0 3
HECA WILD-TYPE 49 94 4 99
'HECA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.19

Table S5623.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HECA MUTATED 1 11 0
HECA WILD-TYPE 25 168 84

Figure S1331.  Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HECA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S5624.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HECA MUTATED 0 6 6 0 0
HECA WILD-TYPE 69 52 106 1 49

Figure S1332.  Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S5625.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HECA MUTATED 0 7 0
HECA WILD-TYPE 18 91 95

Figure S1333.  Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S5626.  Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HECA MUTATED 0 2 5 0 0
HECA WILD-TYPE 17 32 85 69 1
'RHOBTB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S5627.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RHOBTB2 MUTATED 1 1 14
RHOBTB2 WILD-TYPE 79 54 138

Figure S1334.  Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.73

Table S5628.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RHOBTB2 MUTATED 8 1 3
RHOBTB2 WILD-TYPE 113 36 83
'RHOBTB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5629.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RHOBTB2 MUTATED 9 0 4
RHOBTB2 WILD-TYPE 155 13 76
'RHOBTB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.3

Table S5630.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RHOBTB2 MUTATED 0 9 0 4
RHOBTB2 WILD-TYPE 49 93 4 98
'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.052

Table S5631.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RHOBTB2 MUTATED 0 16 0
RHOBTB2 WILD-TYPE 26 163 84

Figure S1335.  Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.024

Table S5632.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RHOBTB2 MUTATED 1 10 5 0 0
RHOBTB2 WILD-TYPE 68 48 107 1 49

Figure S1336.  Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.022

Table S5633.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RHOBTB2 MUTATED 0 11 0
RHOBTB2 WILD-TYPE 18 87 95

Figure S1337.  Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.17

Table S5634.  Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RHOBTB2 MUTATED 0 4 7 0 0
RHOBTB2 WILD-TYPE 17 30 83 69 1

Figure S1338.  Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S5635.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EML3 MUTATED 1 2 7
EML3 WILD-TYPE 79 53 145
'EML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 0.98

Table S5636.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EML3 MUTATED 6 1 3
EML3 WILD-TYPE 115 36 83
'EML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S5637.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EML3 MUTATED 8 0 2
EML3 WILD-TYPE 156 13 78
'EML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.73

Table S5638.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EML3 MUTATED 1 6 0 3
EML3 WILD-TYPE 48 96 4 99
'EML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.18

Table S5639.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EML3 MUTATED 0 10 0
EML3 WILD-TYPE 26 169 84

Figure S1339.  Get High-res Image Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'EML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S5640.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EML3 MUTATED 1 4 5 0 0
EML3 WILD-TYPE 68 54 107 1 49
'EML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00789 (Fisher's exact test), Q value = 0.087

Table S5641.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EML3 MUTATED 0 8 0
EML3 WILD-TYPE 18 90 95

Figure S1340.  Get High-res Image Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'EML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S5642.  Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EML3 MUTATED 0 3 5 0 0
EML3 WILD-TYPE 17 31 85 69 1
'EIF2C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.75

Table S5643.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
EIF2C4 MUTATED 2 3 5
EIF2C4 WILD-TYPE 78 52 147
'EIF2C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S5644.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
EIF2C4 MUTATED 5 2 1
EIF2C4 WILD-TYPE 116 35 85
'EIF2C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.56

Table S5645.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
EIF2C4 MUTATED 8 0 1
EIF2C4 WILD-TYPE 156 13 79
'EIF2C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.47

Table S5646.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
EIF2C4 MUTATED 2 6 0 1
EIF2C4 WILD-TYPE 47 96 4 101
'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.89

Table S5647.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
EIF2C4 MUTATED 1 7 2
EIF2C4 WILD-TYPE 25 172 82
'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.7

Table S5648.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
EIF2C4 MUTATED 3 2 5 0 0
EIF2C4 WILD-TYPE 66 56 107 1 49
'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S5649.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
EIF2C4 MUTATED 1 3 3
EIF2C4 WILD-TYPE 17 95 92
'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S5650.  Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
EIF2C4 MUTATED 1 0 4 2 0
EIF2C4 WILD-TYPE 16 34 86 67 1
'LSS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S5651.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
LSS MUTATED 0 0 9
LSS WILD-TYPE 80 55 143

Figure S1341.  Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LSS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S5652.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
LSS MUTATED 8 0 0
LSS WILD-TYPE 113 37 86

Figure S1342.  Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LSS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.31

Table S5653.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
LSS MUTATED 8 0 0
LSS WILD-TYPE 156 13 80
'LSS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.26

Table S5654.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
LSS MUTATED 0 7 0 1
LSS WILD-TYPE 49 95 4 101
'LSS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S5655.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
LSS MUTATED 0 8 1
LSS WILD-TYPE 26 171 83
'LSS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.26

Table S5656.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
LSS MUTATED 0 5 3 0 1
LSS WILD-TYPE 69 53 109 1 48
'LSS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S5657.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
LSS MUTATED 0 6 2
LSS WILD-TYPE 18 92 93
'LSS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.56

Table S5658.  Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
LSS MUTATED 0 1 6 1 0
LSS WILD-TYPE 17 33 84 68 1
'MMP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S5659.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MMP10 MUTATED 1 0 7
MMP10 WILD-TYPE 79 55 145
'MMP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S5660.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MMP10 MUTATED 6 0 2
MMP10 WILD-TYPE 115 37 84
'MMP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5661.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MMP10 MUTATED 4 0 1
MMP10 WILD-TYPE 160 13 79
'MMP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S5662.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MMP10 MUTATED 0 4 0 1
MMP10 WILD-TYPE 49 98 4 101
'MMP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.31

Table S5663.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MMP10 MUTATED 1 7 0
MMP10 WILD-TYPE 25 172 84
'MMP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S5664.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MMP10 MUTATED 1 2 5 0 0
MMP10 WILD-TYPE 68 56 107 1 49
'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.22

Table S5665.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MMP10 MUTATED 1 5 0
MMP10 WILD-TYPE 17 93 95
'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.45

Table S5666.  Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MMP10 MUTATED 0 1 5 0 0
MMP10 WILD-TYPE 17 33 85 69 1
'SLC7A13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.12

Table S5667.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLC7A13 MUTATED 0 0 9
SLC7A13 WILD-TYPE 80 55 143

Figure S1343.  Get High-res Image Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC7A13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.12

Table S5668.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLC7A13 MUTATED 8 0 0
SLC7A13 WILD-TYPE 113 37 86

Figure S1344.  Get High-res Image Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.91

Table S5669.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLC7A13 MUTATED 7 0 2
SLC7A13 WILD-TYPE 157 13 78
'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S5670.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLC7A13 MUTATED 0 6 0 3
SLC7A13 WILD-TYPE 49 96 4 99
'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S5671.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLC7A13 MUTATED 0 8 1
SLC7A13 WILD-TYPE 26 171 83
'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.36

Table S5672.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLC7A13 MUTATED 0 4 4 0 1
SLC7A13 WILD-TYPE 69 54 108 1 48
'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S5673.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLC7A13 MUTATED 0 5 2
SLC7A13 WILD-TYPE 18 93 93
'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S5674.  Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLC7A13 MUTATED 0 3 3 1 0
SLC7A13 WILD-TYPE 17 31 87 68 1
'FANCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S5675.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FANCA MUTATED 0 1 6
FANCA WILD-TYPE 80 54 146
'FANCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.44

Table S5676.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
FANCA MUTATED 4 1 0
FANCA WILD-TYPE 117 36 86
'FANCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.45

Table S5677.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FANCA MUTATED 6 0 0
FANCA WILD-TYPE 158 13 80
'FANCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S5678.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FANCA MUTATED 0 5 0 1
FANCA WILD-TYPE 49 97 4 101
'FANCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.32

Table S5679.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FANCA MUTATED 0 7 0
FANCA WILD-TYPE 26 172 84
'FANCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00293 (Fisher's exact test), Q value = 0.052

Table S5680.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FANCA MUTATED 0 6 1 0 0
FANCA WILD-TYPE 69 52 111 1 49

Figure S1345.  Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'FANCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.64

Table S5681.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
FANCA MUTATED 0 4 1
FANCA WILD-TYPE 18 94 94
'FANCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S5682.  Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
FANCA MUTATED 0 2 3 0 0
FANCA WILD-TYPE 17 32 87 69 1
'CLIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 0.86

Table S5683.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CLIP1 MUTATED 3 2 9
CLIP1 WILD-TYPE 77 53 143
'CLIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00578 (Fisher's exact test), Q value = 0.075

Table S5684.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CLIP1 MUTATED 11 2 0
CLIP1 WILD-TYPE 110 35 86

Figure S1346.  Get High-res Image Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.52

Table S5685.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CLIP1 MUTATED 11 1 2
CLIP1 WILD-TYPE 153 12 78
'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.27

Table S5686.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CLIP1 MUTATED 2 10 0 2
CLIP1 WILD-TYPE 47 92 4 100
'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.56

Table S5687.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CLIP1 MUTATED 1 12 2
CLIP1 WILD-TYPE 25 167 82
'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S5688.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CLIP1 MUTATED 3 6 5 0 1
CLIP1 WILD-TYPE 66 52 107 1 48
'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S5689.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CLIP1 MUTATED 1 8 2
CLIP1 WILD-TYPE 17 90 93
'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.64

Table S5690.  Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CLIP1 MUTATED 0 3 6 2 0
CLIP1 WILD-TYPE 17 31 84 67 1
'ZNF217 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S5691.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
ZNF217 MUTATED 2 1 11
ZNF217 WILD-TYPE 78 54 141
'ZNF217 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.17

Table S5692.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
ZNF217 MUTATED 8 2 0
ZNF217 WILD-TYPE 113 35 86

Figure S1347.  Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF217 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.29

Table S5693.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
ZNF217 MUTATED 12 0 1
ZNF217 WILD-TYPE 152 13 79
'ZNF217 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.1

Table S5694.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
ZNF217 MUTATED 1 11 0 1
ZNF217 WILD-TYPE 48 91 4 101

Figure S1348.  Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.13

Table S5695.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
ZNF217 MUTATED 1 13 0
ZNF217 WILD-TYPE 25 166 84

Figure S1349.  Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.31

Table S5696.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
ZNF217 MUTATED 2 6 6 0 0
ZNF217 WILD-TYPE 67 52 106 1 49
'ZNF217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S5697.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
ZNF217 MUTATED 0 9 1
ZNF217 WILD-TYPE 18 89 94

Figure S1350.  Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S5698.  Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
ZNF217 MUTATED 0 5 5 0 0
ZNF217 WILD-TYPE 17 29 85 69 1

Figure S1351.  Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.52

Table S5699.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
SLA MUTATED 0 0 4
SLA WILD-TYPE 80 55 148
'SLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.42

Table S5700.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
SLA MUTATED 4 0 0
SLA WILD-TYPE 117 37 86
'SLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S5701.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
SLA MUTATED 4 0 0
SLA WILD-TYPE 160 13 80
'SLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S5702.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
SLA MUTATED 0 4 0 0
SLA WILD-TYPE 49 98 4 102
'SLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S5703.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
SLA MUTATED 0 4 0
SLA WILD-TYPE 26 175 84
'SLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S5704.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
SLA MUTATED 0 4 0 0 0
SLA WILD-TYPE 69 54 112 1 49

Figure S1352.  Get High-res Image Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S5705.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
SLA MUTATED 0 3 1
SLA WILD-TYPE 18 95 94
'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S5706.  Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
SLA MUTATED 0 2 2 0 0
SLA WILD-TYPE 17 32 88 69 1
'HDAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0066

Table S5707.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
HDAC4 MUTATED 0 1 21
HDAC4 WILD-TYPE 80 54 131

Figure S1353.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.014

Table S5708.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
HDAC4 MUTATED 18 1 1
HDAC4 WILD-TYPE 103 36 85

Figure S1354.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.039

Table S5709.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
HDAC4 MUTATED 18 0 0
HDAC4 WILD-TYPE 146 13 80

Figure S1355.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0036

Table S5710.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
HDAC4 MUTATED 0 17 0 1
HDAC4 WILD-TYPE 49 85 4 101

Figure S1356.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.046

Table S5711.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
HDAC4 MUTATED 0 21 1
HDAC4 WILD-TYPE 26 158 83

Figure S1357.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S5712.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
HDAC4 MUTATED 0 15 6 0 1
HDAC4 WILD-TYPE 69 43 106 1 48

Figure S1358.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00157 (Fisher's exact test), Q value = 0.035

Table S5713.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
HDAC4 MUTATED 0 15 2
HDAC4 WILD-TYPE 18 83 93

Figure S1359.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.024

Table S5714.  Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
HDAC4 MUTATED 0 9 7 1 0
HDAC4 WILD-TYPE 17 25 83 68 1

Figure S1360.  Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AHI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.12

Table S5715.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
AHI1 MUTATED 0 0 9
AHI1 WILD-TYPE 80 55 143

Figure S1361.  Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AHI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S5716.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
AHI1 MUTATED 6 1 1
AHI1 WILD-TYPE 115 36 85
'AHI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5717.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
AHI1 MUTATED 6 0 2
AHI1 WILD-TYPE 158 13 78
'AHI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S5718.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
AHI1 MUTATED 0 5 0 3
AHI1 WILD-TYPE 49 97 4 99
'AHI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 0.27

Table S5719.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
AHI1 MUTATED 0 9 0
AHI1 WILD-TYPE 26 170 84
'AHI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.12

Table S5720.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
AHI1 MUTATED 0 6 3 0 0
AHI1 WILD-TYPE 69 52 109 1 49

Figure S1362.  Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'AHI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S5721.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
AHI1 MUTATED 1 6 1
AHI1 WILD-TYPE 17 92 94
'AHI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.3

Table S5722.  Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
AHI1 MUTATED 0 3 5 0 0
AHI1 WILD-TYPE 17 31 85 69 1
'CLSTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.27

Table S5723.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
CLSTN1 MUTATED 1 0 9
CLSTN1 WILD-TYPE 79 55 143
'CLSTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.84

Table S5724.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
CLSTN1 MUTATED 6 1 2
CLSTN1 WILD-TYPE 115 36 84
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 0.93

Table S5725.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
CLSTN1 MUTATED 6 0 4
CLSTN1 WILD-TYPE 158 13 76
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.73

Table S5726.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
CLSTN1 MUTATED 1 6 0 3
CLSTN1 WILD-TYPE 48 96 4 99
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.21

Table S5727.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
CLSTN1 MUTATED 1 10 0
CLSTN1 WILD-TYPE 25 169 84

Figure S1363.  Get High-res Image Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S5728.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
CLSTN1 MUTATED 1 5 5 0 0
CLSTN1 WILD-TYPE 68 53 107 1 49
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 0.1

Table S5729.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
CLSTN1 MUTATED 1 8 0
CLSTN1 WILD-TYPE 17 90 95

Figure S1364.  Get High-res Image Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S5730.  Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
CLSTN1 MUTATED 1 2 6 0 0
CLSTN1 WILD-TYPE 16 32 84 69 1
'PPM1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S5731.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PPM1H MUTATED 0 1 7
PPM1H WILD-TYPE 80 54 145
'PPM1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.44

Table S5732.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PPM1H MUTATED 4 1 0
PPM1H WILD-TYPE 117 36 86
'PPM1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.73

Table S5733.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PPM1H MUTATED 6 0 1
PPM1H WILD-TYPE 158 13 79
'PPM1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S5734.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PPM1H MUTATED 0 5 0 2
PPM1H WILD-TYPE 49 97 4 100
'PPM1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.28

Table S5735.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PPM1H MUTATED 0 8 0
PPM1H WILD-TYPE 26 171 84
'PPM1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.084 (Fisher's exact test), Q value = 0.27

Table S5736.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PPM1H MUTATED 0 4 4 0 0
PPM1H WILD-TYPE 69 54 108 1 49
'PPM1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S5737.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PPM1H MUTATED 1 3 0
PPM1H WILD-TYPE 17 95 95
'PPM1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.21

Table S5738.  Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PPM1H MUTATED 0 3 1 0 0
PPM1H WILD-TYPE 17 31 89 69 1

Figure S1365.  Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.27

Table S5739.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KYNU MUTATED 1 0 9
KYNU WILD-TYPE 79 55 143
'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5740.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KYNU MUTATED 4 1 2
KYNU WILD-TYPE 117 36 84
'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S5741.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KYNU MUTATED 7 1 2
KYNU WILD-TYPE 157 12 78
'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.73

Table S5742.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KYNU MUTATED 1 6 0 3
KYNU WILD-TYPE 48 96 4 99
'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.28

Table S5743.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KYNU MUTATED 1 9 0
KYNU WILD-TYPE 25 170 84
'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S5744.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KYNU MUTATED 1 4 5 0 0
KYNU WILD-TYPE 68 54 107 1 49
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.23

Table S5745.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KYNU MUTATED 1 5 0
KYNU WILD-TYPE 17 93 95
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S5746.  Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KYNU MUTATED 0 1 5 0 0
KYNU WILD-TYPE 17 33 85 69 1
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.016

Table S5747.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MLL4 MUTATED 2 0 20
MLL4 WILD-TYPE 78 55 132

Figure S1366.  Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.013

Table S5748.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MLL4 MUTATED 16 1 0
MLL4 WILD-TYPE 105 36 86

Figure S1367.  Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.3

Table S5749.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MLL4 MUTATED 18 0 3
MLL4 WILD-TYPE 146 13 77
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00182 (Fisher's exact test), Q value = 0.038

Table S5750.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MLL4 MUTATED 1 17 0 3
MLL4 WILD-TYPE 48 85 4 99

Figure S1368.  Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00778 (Fisher's exact test), Q value = 0.087

Table S5751.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MLL4 MUTATED 0 21 2
MLL4 WILD-TYPE 26 158 82

Figure S1369.  Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.18

Table S5752.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MLL4 MUTATED 2 9 11 0 1
MLL4 WILD-TYPE 67 49 101 1 48

Figure S1370.  Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S5753.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MLL4 MUTATED 0 12 2
MLL4 WILD-TYPE 18 86 93

Figure S1371.  Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 0.27

Table S5754.  Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MLL4 MUTATED 0 4 9 1 0
MLL4 WILD-TYPE 17 30 81 68 1
'PHKG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S5755.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
PHKG2 MUTATED 1 0 11
PHKG2 WILD-TYPE 79 55 141

Figure S1372.  Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHKG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.19

Table S5756.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
PHKG2 MUTATED 9 0 1
PHKG2 WILD-TYPE 112 37 85

Figure S1373.  Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHKG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S5757.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
PHKG2 MUTATED 8 0 2
PHKG2 WILD-TYPE 156 13 78
'PHKG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0752 (Fisher's exact test), Q value = 0.26

Table S5758.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
PHKG2 MUTATED 0 8 0 2
PHKG2 WILD-TYPE 49 94 4 100
'PHKG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S5759.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
PHKG2 MUTATED 0 10 2
PHKG2 WILD-TYPE 26 169 82
'PHKG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.002

Table S5760.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
PHKG2 MUTATED 0 10 0 0 2
PHKG2 WILD-TYPE 69 48 112 1 47

Figure S1374.  Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.4

Table S5761.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
PHKG2 MUTATED 0 7 2
PHKG2 WILD-TYPE 18 91 93
'PHKG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S5762.  Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
PHKG2 MUTATED 0 4 3 2 0
PHKG2 WILD-TYPE 17 30 87 67 1
'OR4C16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S5763.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
OR4C16 MUTATED 3 2 8
OR4C16 WILD-TYPE 77 53 144
'OR4C16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.26

Table S5764.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
OR4C16 MUTATED 8 0 1
OR4C16 WILD-TYPE 113 37 85
'OR4C16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.082

Table S5765.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
OR4C16 MUTATED 7 3 1
OR4C16 WILD-TYPE 157 10 79

Figure S1375.  Get High-res Image Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'OR4C16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.17

Table S5766.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
OR4C16 MUTATED 2 7 1 1
OR4C16 WILD-TYPE 47 95 3 101

Figure S1376.  Get High-res Image Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OR4C16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S5767.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
OR4C16 MUTATED 1 10 2
OR4C16 WILD-TYPE 25 169 82
'OR4C16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.15

Table S5768.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
OR4C16 MUTATED 0 4 9 0 0
OR4C16 WILD-TYPE 69 54 103 1 49

Figure S1377.  Get High-res Image Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OR4C16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.28

Table S5769.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
OR4C16 MUTATED 1 7 1
OR4C16 WILD-TYPE 17 91 94
'OR4C16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S5770.  Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
OR4C16 MUTATED 0 1 7 1 0
OR4C16 WILD-TYPE 17 33 83 68 1
'NUAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S5771.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
NUAK1 MUTATED 3 2 11
NUAK1 WILD-TYPE 77 53 141
'NUAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.17

Table S5772.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
NUAK1 MUTATED 11 1 1
NUAK1 WILD-TYPE 110 36 85

Figure S1378.  Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S5773.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
NUAK1 MUTATED 11 1 3
NUAK1 WILD-TYPE 153 12 77
'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.27

Table S5774.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
NUAK1 MUTATED 0 10 0 5
NUAK1 WILD-TYPE 49 92 4 97
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S5775.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
NUAK1 MUTATED 1 12 3
NUAK1 WILD-TYPE 25 167 81
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S5776.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
NUAK1 MUTATED 1 6 8 0 1
NUAK1 WILD-TYPE 68 52 104 1 48
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.17

Table S5777.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
NUAK1 MUTATED 1 9 1
NUAK1 WILD-TYPE 17 89 94

Figure S1379.  Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S5778.  Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
NUAK1 MUTATED 0 2 8 1 0
NUAK1 WILD-TYPE 17 32 82 68 1
'FAM82A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.51

Table S5779.  Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
FAM82A1 MUTATED 0 0 4
FAM82A1 WILD-TYPE 80 55 148
'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5780.  Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
FAM82A1 MUTATED 3 0 1
FAM82A1 WILD-TYPE 161 13 79
'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.7

Table S5781.  Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
FAM82A1 MUTATED 0 3 0 1
FAM82A1 WILD-TYPE 49 99 4 101
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S5782.  Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
FAM82A1 MUTATED 0 4 0
FAM82A1 WILD-TYPE 26 175 84
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5783.  Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
FAM82A1 MUTATED 1 1 2 0 0
FAM82A1 WILD-TYPE 68 57 110 1 49
'RASSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.52

Table S5784.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
RASSF5 MUTATED 0 0 4
RASSF5 WILD-TYPE 80 55 148
'RASSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.42

Table S5785.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
RASSF5 MUTATED 4 0 0
RASSF5 WILD-TYPE 117 37 86
'RASSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.74

Table S5786.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
RASSF5 MUTATED 3 0 0
RASSF5 WILD-TYPE 161 13 80
'RASSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5787.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
RASSF5 MUTATED 0 2 0 1
RASSF5 WILD-TYPE 49 100 4 101
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5788.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
RASSF5 MUTATED 0 3 1
RASSF5 WILD-TYPE 26 176 83
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.5

Table S5789.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
RASSF5 MUTATED 0 2 1 0 1
RASSF5 WILD-TYPE 69 56 111 1 48
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5790.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
RASSF5 MUTATED 0 2 2
RASSF5 WILD-TYPE 18 96 93
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 0.87

Table S5791.  Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
RASSF5 MUTATED 0 0 3 1 0
RASSF5 WILD-TYPE 17 34 87 68 1
'MTMR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5792.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
MTMR11 MUTATED 2 1 5
MTMR11 WILD-TYPE 78 54 147
'MTMR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.68

Table S5793.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
MTMR11 MUTATED 4 1 1
MTMR11 WILD-TYPE 117 36 85
'MTMR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5794.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
MTMR11 MUTATED 6 0 2
MTMR11 WILD-TYPE 158 13 78
'MTMR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S5795.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
MTMR11 MUTATED 0 6 0 2
MTMR11 WILD-TYPE 49 96 4 100
'MTMR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.25

Table S5796.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
MTMR11 MUTATED 2 6 0
MTMR11 WILD-TYPE 24 173 84
'MTMR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S5797.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
MTMR11 MUTATED 3 3 2 0 0
MTMR11 WILD-TYPE 66 55 110 1 49
'MTMR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.23

Table S5798.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
MTMR11 MUTATED 1 5 0
MTMR11 WILD-TYPE 17 93 95
'MTMR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.22

Table S5799.  Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
MTMR11 MUTATED 0 4 1 1 0
MTMR11 WILD-TYPE 17 30 89 68 1
'KRT222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.73

Table S5800.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 55 152
KRT222 MUTATED 1 0 4
KRT222 WILD-TYPE 79 55 148
'KRT222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.48

Table S5801.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 37 86
KRT222 MUTATED 2 1 0
KRT222 WILD-TYPE 119 36 86
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S5802.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 13 80
KRT222 MUTATED 4 0 0
KRT222 WILD-TYPE 160 13 80
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S5803.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_5
ALL 49 102 4 102
KRT222 MUTATED 0 4 0 0
KRT222 WILD-TYPE 49 98 4 102
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.39

Table S5804.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 179 84
KRT222 MUTATED 1 4 0
KRT222 WILD-TYPE 25 175 84
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S5805.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 69 58 112 1 49
KRT222 MUTATED 1 3 1 0 0
KRT222 WILD-TYPE 68 55 111 1 49
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.52

Table S5806.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 98 95
KRT222 MUTATED 0 3 0
KRT222 WILD-TYPE 18 95 95
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S5807.  Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 17 34 90 69 1
KRT222 MUTATED 0 1 2 0 0
KRT222 WILD-TYPE 17 33 88 69 1
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STES-TP/15639514/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STES-TP/15125163/STES-TP.transferedmergedcluster.txt

  • Number of patients = 289

  • Number of significantly mutated genes = 739

  • Number of Molecular subtypes = 8

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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