This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 98 focal events and 17 clinical features across 499 patients, 173 significant findings detected with Q value < 0.25.
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amp_1p36.32 cnv correlated to 'RACE'.
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amp_1p32.3 cnv correlated to 'RADIATION_EXPOSURE'.
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amp_1q31.2 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'TUMOR_SIZE', and 'RACE'.
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amp_1q43 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'TUMOR_SIZE', and 'RACE'.
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amp_3p22.3 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', and 'NEOPLASM_DISEASESTAGE'.
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amp_3p14.1 cnv correlated to 'Time to Death'.
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amp_4p16.1 cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_4q22.1 cnv correlated to 'Time to Death'.
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amp_4q28.2 cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_4q31.21 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_4q32.3 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_5p14.3 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'TUMOR_SIZE'.
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amp_5q21.1 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_5q21.1 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'TUMOR_SIZE'.
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amp_5q33.1 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_5q35.2 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'NUMBER_OF_LYMPH_NODES', and 'TUMOR_SIZE'.
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amp_6p22.3 cnv correlated to 'Time to Death'.
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amp_6p22.2 cnv correlated to 'Time to Death' and 'YEARS_TO_BIRTH'.
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amp_6p21.31 cnv correlated to 'Time to Death' and 'NEOPLASM_DISEASESTAGE'.
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amp_6p12.2 cnv correlated to 'Time to Death'.
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amp_7q11.21 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_7q21.11 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_7q31.1 cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_7q34 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_9q31.1 cnv correlated to 'TUMOR_SIZE'.
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amp_9q34.3 cnv correlated to 'HISTOLOGICAL_TYPE' and 'TUMOR_SIZE'.
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amp_10q24.2 cnv correlated to 'YEARS_TO_BIRTH' and 'HISTOLOGICAL_TYPE'.
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amp_12p11.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_12q21.31 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_12q23.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_13q34 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_14q12 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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amp_14q32.31 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_18q22.3 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_19p13.3 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_20p13 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_20q13.11 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_20q13.2 cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_20q13.2 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_22q11.21 cnv correlated to 'COMPLETENESS_OF_RESECTION'.
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amp_xp22.12 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'COMPLETENESS_OF_RESECTION'.
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amp_xp11.4 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'EXTRATHYROIDAL_EXTENSION'.
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amp_xp11.22 cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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amp_xp11.22 cnv correlated to 'YEARS_TO_BIRTH', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_xq21.2 cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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amp_xq22.3 cnv correlated to 'GENDER' and 'EXTRATHYROIDAL_EXTENSION'.
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amp_xq23 cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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amp_xq28 cnv correlated to 'YEARS_TO_BIRTH' and 'EXTRATHYROIDAL_EXTENSION'.
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del_2p23.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_2q22.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_2q37.3 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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del_6q22.31 cnv correlated to 'Time to Death' and 'TUMOR_SIZE'.
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del_8q24.22 cnv correlated to 'GENDER'.
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del_9p21.3 cnv correlated to 'YEARS_TO_BIRTH' and 'NEOPLASM_DISEASESTAGE'.
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del_9q22.33 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'TUMOR_SIZE'.
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del_10p12.31 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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del_10q23.31 cnv correlated to 'PATHOLOGY_N_STAGE' and 'TUMOR_SIZE'.
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del_11p15.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'GENDER', and 'TUMOR_SIZE'.
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del_13q12.13 cnv correlated to 'YEARS_TO_BIRTH' and 'RADIATION_EXPOSURE'.
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del_13q22.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'RADIATION_EXPOSURE', and 'NUMBER_OF_LYMPH_NODES'.
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del_16q23.3 cnv correlated to 'NEOPLASM_DISEASESTAGE' and 'PATHOLOGY_T_STAGE'.
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del_17p13.1 cnv correlated to 'RADIATIONS_RADIATION_REGIMENINDICATION' and 'TUMOR_SIZE'.
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del_19p13.2 cnv correlated to 'TUMOR_SIZE'.
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del_19p13.12 cnv correlated to 'TUMOR_SIZE'.
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del_21q21.1 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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del_xq23 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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del_xq22.3 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
NEOPLASM DISEASESTAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
HISTOLOGICAL TYPE |
RADIATIONS RADIATION REGIMENINDICATION |
RADIATION EXPOSURE |
EXTRATHYROIDAL EXTENSION |
COMPLETENESS OF RESECTION |
NUMBER OF LYMPH NODES |
MULTIFOCALITY |
TUMOR SIZE |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
amp 1q31 2 | 29 (6%) | 470 |
0.161 (0.626) |
4.67e-05 (0.00823) |
2e-05 (0.00476) |
1e-05 (0.00278) |
0.00109 (0.0801) |
1 (1.00) |
0.665 (1.00) |
0.00643 (0.154) |
0.572 (1.00) |
1 (1.00) |
1e-05 (0.00278) |
0.046 (0.336) |
0.0305 (0.269) |
0.124 (0.529) |
0.00349 (0.115) |
0.00357 (0.115) |
0.0285 (0.259) |
amp 1q43 | 29 (6%) | 470 |
0.0345 (0.281) |
2.47e-06 (0.00206) |
1e-05 (0.00278) |
1e-05 (0.00278) |
0.00277 (0.113) |
0.389 (0.945) |
1 (1.00) |
0.00649 (0.154) |
0.572 (1.00) |
1 (1.00) |
4e-05 (0.00823) |
0.045 (0.33) |
0.0506 (0.343) |
0.0535 (0.353) |
0.00604 (0.154) |
0.00336 (0.115) |
0.0907 (0.462) |
amp 5q35 2 | 20 (4%) | 479 |
0.075 (0.429) |
0.0027 (0.113) |
0.00296 (0.114) |
0.118 (0.529) |
0.0112 (0.161) |
1 (1.00) |
0.196 (0.687) |
0.0135 (0.178) |
0.104 (0.5) |
1 (1.00) |
0.0117 (0.166) |
0.507 (1.00) |
0.00615 (0.154) |
1 (1.00) |
0.00806 (0.161) |
0.44 (1.00) |
0.615 (1.00) |
amp 7q21 11 | 21 (4%) | 478 |
0.493 (1.00) |
0.00866 (0.161) |
0.0249 (0.243) |
0.471 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.804 (1.00) |
0.0217 (0.223) |
1 (1.00) |
1 (1.00) |
0.0141 (0.183) |
0.508 (1.00) |
0.0011 (0.0801) |
0.509 (1.00) |
0.601 (1.00) |
0.299 (0.835) |
0.623 (1.00) |
amp 5q21 1 | 20 (4%) | 479 |
0.0905 (0.462) |
0.00185 (0.105) |
0.0009 (0.0789) |
0.288 (0.827) |
0.00196 (0.105) |
1 (1.00) |
0.196 (0.687) |
0.05 (0.341) |
0.44 (1.00) |
1 (1.00) |
0.0281 (0.257) |
0.511 (1.00) |
0.00196 (0.105) |
0.652 (1.00) |
0.0128 (0.171) |
0.441 (1.00) |
1 (1.00) |
del 11p15 1 | 7 (1%) | 492 |
0.00266 (0.113) |
0.000665 (0.0652) |
0.00582 (0.154) |
0.235 (0.751) |
0.285 (0.825) |
1 (1.00) |
0.0164 (0.193) |
0.82 (1.00) |
0.182 (0.654) |
1 (1.00) |
0.558 (1.00) |
0.53 (1.00) |
0.208 (0.707) |
0.708 (1.00) |
0.00797 (0.161) |
0.477 (1.00) |
1 (1.00) |
amp 5q21 1 | 23 (5%) | 476 |
0.104 (0.5) |
0.0208 (0.22) |
0.009 (0.161) |
0.712 (1.00) |
0.0101 (0.161) |
1 (1.00) |
0.225 (0.737) |
0.331 (0.864) |
0.488 (1.00) |
1 (1.00) |
0.0485 (0.339) |
0.411 (0.958) |
0.00817 (0.161) |
0.834 (1.00) |
0.177 (0.654) |
0.226 (0.739) |
1 (1.00) |
amp 5q33 1 | 21 (4%) | 478 |
0.0384 (0.3) |
0.0124 (0.169) |
0.00473 (0.136) |
0.552 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.218 (0.723) |
0.0891 (0.462) |
0.457 (1.00) |
1 (1.00) |
0.0281 (0.257) |
0.394 (0.945) |
0.0102 (0.161) |
1 (1.00) |
0.0889 (0.462) |
1 (1.00) |
0.623 (1.00) |
amp 7q11 21 | 20 (4%) | 479 |
0.454 (1.00) |
0.0901 (0.462) |
0.0186 (0.207) |
0.516 (1.00) |
0.00358 (0.115) |
1 (1.00) |
0.797 (1.00) |
0.0494 (0.341) |
1 (1.00) |
1 (1.00) |
0.0041 (0.124) |
0.482 (1.00) |
0.00196 (0.105) |
0.817 (1.00) |
0.367 (0.929) |
1 (1.00) |
0.615 (1.00) |
amp 7q34 | 22 (4%) | 477 |
0.53 (1.00) |
0.0562 (0.361) |
0.0342 (0.28) |
0.696 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.808 (1.00) |
0.0086 (0.161) |
1 (1.00) |
1 (1.00) |
0.0122 (0.169) |
0.328 (0.864) |
0.00567 (0.152) |
0.668 (1.00) |
0.577 (1.00) |
0.297 (0.835) |
1 (1.00) |
amp 14q32 31 | 13 (3%) | 486 |
0.536 (1.00) |
0.0437 (0.328) |
0.00314 (0.115) |
0.309 (0.85) |
0.0108 (0.161) |
1 (1.00) |
0.529 (1.00) |
0.0212 (0.222) |
1 (1.00) |
1 (1.00) |
0.862 (1.00) |
0.558 (1.00) |
0.0175 (0.2) |
0.099 (0.483) |
0.234 (0.751) |
0.777 (1.00) |
1 (1.00) |
amp 20p13 | 14 (3%) | 485 |
0.507 (1.00) |
0.148 (0.593) |
0.0151 (0.186) |
0.504 (1.00) |
0.0201 (0.215) |
1 (1.00) |
1 (1.00) |
0.0153 (0.188) |
1 (1.00) |
1 (1.00) |
0.0343 (0.28) |
0.462 (1.00) |
0.00383 (0.12) |
1 (1.00) |
0.0397 (0.309) |
0.781 (1.00) |
0.509 (1.00) |
amp 20q13 11 | 14 (3%) | 485 |
0.469 (1.00) |
0.259 (0.782) |
0.0275 (0.256) |
0.482 (1.00) |
0.0108 (0.161) |
1 (1.00) |
1 (1.00) |
0.00348 (0.115) |
1 (1.00) |
1 (1.00) |
0.0102 (0.161) |
1 (1.00) |
0.00213 (0.108) |
1 (1.00) |
0.129 (0.544) |
0.757 (1.00) |
0.174 (0.653) |
amp 20q13 2 | 14 (3%) | 485 |
0.334 (0.864) |
0.0215 (0.222) |
0.0271 (0.255) |
0.711 (1.00) |
0.0622 (0.377) |
1 (1.00) |
0.216 (0.723) |
0.00353 (0.115) |
1 (1.00) |
1 (1.00) |
0.00956 (0.161) |
1 (1.00) |
0.0224 (0.229) |
0.792 (1.00) |
0.0803 (0.441) |
0.778 (1.00) |
1 (1.00) |
amp 3p22 3 | 4 (1%) | 495 |
0.00498 (0.138) |
0.015 (0.186) |
0.0108 (0.161) |
0.109 (0.515) |
0.623 (1.00) |
0.0315 (0.271) |
1 (1.00) |
0.455 (1.00) |
1 (1.00) |
1 (1.00) |
0.646 (1.00) |
0.048 (0.339) |
0.0788 (0.439) |
0.628 (1.00) |
0.547 (1.00) |
1 (1.00) |
|
amp 4p16 1 | 7 (1%) | 492 |
0.017 (0.195) |
0.0448 (0.33) |
0.2 (0.689) |
0.739 (1.00) |
0.00733 (0.161) |
1 (1.00) |
0.39 (0.945) |
0.386 (0.945) |
0.182 (0.654) |
1 (1.00) |
1 (1.00) |
0.532 (1.00) |
0.0125 (0.169) |
0.256 (0.778) |
0.244 (0.762) |
0.588 (1.00) |
1 (1.00) |
amp 4q28 2 | 6 (1%) | 493 |
0.0146 (0.186) |
0.058 (0.371) |
0.334 (0.864) |
0.538 (1.00) |
0.0149 (0.186) |
1 (1.00) |
0.66 (1.00) |
0.249 (0.768) |
0.158 (0.619) |
1 (1.00) |
1 (1.00) |
0.464 (1.00) |
0.0228 (0.229) |
0.0991 (0.483) |
0.244 (0.762) |
0.587 (1.00) |
1 (1.00) |
amp 5p14 3 | 23 (5%) | 476 |
0.0949 (0.473) |
4.94e-05 (0.00823) |
0.00184 (0.105) |
0.156 (0.616) |
0.494 (1.00) |
1 (1.00) |
0.636 (1.00) |
0.33 (0.864) |
0.488 (1.00) |
1 (1.00) |
0.0331 (0.278) |
0.0889 (0.462) |
0.138 (0.564) |
0.529 (1.00) |
0.0181 (0.204) |
0.302 (0.835) |
0.646 (1.00) |
amp 12p11 1 | 16 (3%) | 483 |
0.45 (1.00) |
0.112 (0.524) |
0.134 (0.551) |
0.838 (1.00) |
0.000862 (0.0789) |
1 (1.00) |
0.577 (1.00) |
0.00153 (0.102) |
1 (1.00) |
1 (1.00) |
0.407 (0.953) |
0.228 (0.739) |
0.00213 (0.108) |
1 (1.00) |
0.835 (1.00) |
0.561 (1.00) |
1 (1.00) |
amp 12q21 31 | 17 (3%) | 482 |
0.423 (0.98) |
0.17 (0.653) |
0.0684 (0.407) |
0.607 (1.00) |
0.000204 (0.0309) |
1 (1.00) |
0.578 (1.00) |
0.016 (0.191) |
1 (1.00) |
1 (1.00) |
0.117 (0.529) |
0.599 (1.00) |
0.000661 (0.0652) |
0.806 (1.00) |
0.731 (1.00) |
0.489 (1.00) |
1 (1.00) |
amp 12q23 1 | 17 (3%) | 482 |
0.516 (1.00) |
0.0818 (0.443) |
0.0534 (0.353) |
0.605 (1.00) |
0.00301 (0.114) |
1 (1.00) |
0.578 (1.00) |
0.0165 (0.193) |
1 (1.00) |
1 (1.00) |
0.113 (0.524) |
0.599 (1.00) |
0.00618 (0.154) |
0.625 (1.00) |
0.932 (1.00) |
0.489 (1.00) |
1 (1.00) |
amp 20q13 2 | 13 (3%) | 486 |
0.323 (0.864) |
0.0552 (0.361) |
0.00832 (0.161) |
0.483 (1.00) |
0.105 (0.503) |
1 (1.00) |
0.753 (1.00) |
0.00402 (0.124) |
1 (1.00) |
1 (1.00) |
0.0369 (0.294) |
0.65 (1.00) |
0.0241 (0.237) |
0.586 (1.00) |
0.0499 (0.341) |
0.547 (1.00) |
1 (1.00) |
amp xp22 12 | 10 (2%) | 489 |
0.0906 (0.462) |
0.0126 (0.169) |
0.00267 (0.113) |
0.299 (0.835) |
0.105 (0.503) |
1 (1.00) |
1 (1.00) |
0.463 (1.00) |
1 (1.00) |
0.302 (0.835) |
0.0315 (0.271) |
0.017 (0.195) |
0.0513 (0.343) |
0.524 (1.00) |
0.219 (0.723) |
0.479 (1.00) |
1 (1.00) |
amp xp11 4 | 9 (2%) | 490 |
0.0893 (0.462) |
0.00487 (0.138) |
0.00836 (0.161) |
0.352 (0.896) |
0.175 (0.653) |
1 (1.00) |
1 (1.00) |
0.334 (0.864) |
1 (1.00) |
0.302 (0.835) |
0.019 (0.208) |
0.0842 (0.452) |
0.0703 (0.413) |
0.739 (1.00) |
0.219 (0.723) |
1 (1.00) |
1 (1.00) |
amp xp11 22 | 8 (2%) | 491 |
0.0803 (0.441) |
0.00831 (0.161) |
0.0316 (0.271) |
0.565 (1.00) |
0.122 (0.529) |
1 (1.00) |
0.688 (1.00) |
0.219 (0.723) |
1 (1.00) |
1 (1.00) |
0.018 (0.204) |
0.0717 (0.416) |
0.0228 (0.229) |
0.48 (1.00) |
0.403 (0.948) |
1 (1.00) |
1 (1.00) |
del 2p23 1 | 12 (2%) | 487 |
0.673 (1.00) |
0.698 (1.00) |
0.0555 (0.361) |
0.867 (1.00) |
0.0108 (0.161) |
1 (1.00) |
0.529 (1.00) |
0.00338 (0.115) |
1 (1.00) |
1 (1.00) |
0.0767 (0.438) |
0.453 (1.00) |
0.0113 (0.161) |
0.779 (1.00) |
0.954 (1.00) |
1 (1.00) |
1 (1.00) |
del 2q22 1 | 10 (2%) | 489 |
0.587 (1.00) |
0.257 (0.779) |
0.0302 (0.268) |
0.796 (1.00) |
0.00733 (0.161) |
1 (1.00) |
0.731 (1.00) |
0.00533 (0.146) |
1 (1.00) |
1 (1.00) |
0.147 (0.592) |
0.455 (1.00) |
0.00691 (0.16) |
1 (1.00) |
0.364 (0.924) |
1 (1.00) |
1 (1.00) |
del 2q37 3 | 13 (3%) | 486 |
0.311 (0.853) |
0.133 (0.551) |
0.0157 (0.19) |
0.447 (1.00) |
0.0201 (0.215) |
1 (1.00) |
0.346 (0.885) |
0.0442 (0.33) |
1 (1.00) |
0.382 (0.945) |
0.24 (0.756) |
0.237 (0.751) |
0.0161 (0.192) |
0.779 (1.00) |
0.056 (0.361) |
0.759 (1.00) |
1 (1.00) |
del 9q22 33 | 27 (5%) | 472 |
0.0359 (0.288) |
0.000578 (0.0642) |
0.0003 (0.0416) |
0.12 (0.529) |
0.392 (0.945) |
0.301 (0.835) |
0.501 (1.00) |
1 (1.00) |
0.546 (1.00) |
1 (1.00) |
0.0913 (0.462) |
0.878 (1.00) |
0.965 (1.00) |
0.692 (1.00) |
0.0209 (0.22) |
0.83 (1.00) |
1 (1.00) |
del 13q22 1 | 19 (4%) | 480 |
0.546 (1.00) |
0.0804 (0.441) |
0.66 (1.00) |
0.983 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.299 (0.835) |
0.629 (1.00) |
0.0952 (0.473) |
0.00273 (0.113) |
0.478 (1.00) |
0.747 (1.00) |
0.0252 (0.243) |
0.641 (1.00) |
0.394 (0.945) |
0.598 (1.00) |
0.383 (0.945) |
amp 4q31 21 | 10 (2%) | 489 |
0.294 (0.835) |
0.0561 (0.361) |
0.158 (0.619) |
0.501 (1.00) |
0.0201 (0.215) |
1 (1.00) |
1 (1.00) |
0.519 (1.00) |
0.25 (0.768) |
1 (1.00) |
0.653 (1.00) |
0.82 (1.00) |
0.0063 (0.154) |
0.198 (0.687) |
0.191 (0.678) |
0.0376 (0.295) |
1 (1.00) |
amp 4q32 3 | 7 (1%) | 492 |
0.152 (0.605) |
0.115 (0.529) |
0.201 (0.693) |
0.3 (0.835) |
0.00733 (0.161) |
1 (1.00) |
1 (1.00) |
0.131 (0.545) |
0.182 (0.654) |
1 (1.00) |
1 (1.00) |
0.0494 (0.341) |
0.00691 (0.16) |
0.708 (1.00) |
0.275 (0.816) |
1 (1.00) |
1 (1.00) |
amp 6p22 2 | 4 (1%) | 495 |
1.46e-06 (0.00206) |
0.00451 (0.132) |
0.0401 (0.311) |
0.398 (0.945) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.108 (0.511) |
1 (1.00) |
0.644 (1.00) |
1 (1.00) |
0.47 (1.00) |
0.628 (1.00) |
0.302 (0.835) |
1 (1.00) |
1 (1.00) |
amp 6p21 31 | 3 (1%) | 496 |
0.00427 (0.127) |
0.0474 (0.339) |
0.0121 (0.169) |
0.155 (0.613) |
0.623 (1.00) |
0.0621 (0.377) |
1 (1.00) |
1 (1.00) |
0.082 (0.443) |
1 (1.00) |
0.458 (1.00) |
0.468 (1.00) |
1 (1.00) |
0.533 (1.00) |
0.483 (1.00) |
1 (1.00) |
|
amp 7q31 1 | 22 (4%) | 477 |
0.504 (1.00) |
0.0694 (0.409) |
0.033 (0.278) |
0.696 (1.00) |
0.0449 (0.33) |
1 (1.00) |
1 (1.00) |
0.00849 (0.161) |
1 (1.00) |
1 (1.00) |
0.0278 (0.257) |
0.174 (0.653) |
0.0104 (0.161) |
1 (1.00) |
0.677 (1.00) |
1 (1.00) |
0.608 (1.00) |
amp 9q34 3 | 7 (1%) | 492 |
0.595 (1.00) |
0.233 (0.749) |
0.236 (0.751) |
0.422 (0.98) |
0.285 (0.825) |
1 (1.00) |
0.39 (0.945) |
0.0239 (0.237) |
0.182 (0.654) |
1 (1.00) |
0.26 (0.783) |
1 (1.00) |
0.197 (0.687) |
0.708 (1.00) |
0.00926 (0.161) |
1 (1.00) |
1 (1.00) |
amp 10q24 2 | 3 (1%) | 496 |
0.731 (1.00) |
0.00951 (0.161) |
1 (1.00) |
0.389 (0.945) |
0.248 (0.768) |
0.568 (1.00) |
0.0213 (0.222) |
1 (1.00) |
1 (1.00) |
0.611 (1.00) |
0.236 (0.751) |
1 (1.00) |
1 (1.00) |
||||
amp 18q22 3 | 8 (2%) | 491 |
0.591 (1.00) |
0.975 (1.00) |
1 (1.00) |
0.511 (1.00) |
0.00733 (0.161) |
1 (1.00) |
1 (1.00) |
0.514 (1.00) |
1 (1.00) |
1 (1.00) |
0.758 (1.00) |
0.528 (1.00) |
0.0125 (0.169) |
0.298 (0.835) |
0.441 (1.00) |
0.758 (1.00) |
1 (1.00) |
amp xq22 3 | 15 (3%) | 484 |
0.173 (0.653) |
0.366 (0.927) |
0.185 (0.661) |
0.573 (1.00) |
0.293 (0.835) |
1 (1.00) |
0.0148 (0.186) |
0.525 (1.00) |
1 (1.00) |
1 (1.00) |
0.00977 (0.161) |
0.892 (1.00) |
0.311 (0.852) |
0.302 (0.835) |
0.749 (1.00) |
0.665 (1.00) |
1 (1.00) |
amp xq28 | 10 (2%) | 489 |
0.247 (0.768) |
0.0199 (0.215) |
0.06 (0.374) |
0.16 (0.626) |
0.338 (0.869) |
1 (1.00) |
0.0693 (0.409) |
0.13 (0.544) |
0.25 (0.768) |
1 (1.00) |
0.00973 (0.161) |
0.35 (0.895) |
0.212 (0.717) |
0.524 (1.00) |
0.39 (0.945) |
1 (1.00) |
1 (1.00) |
del 6q22 31 | 7 (1%) | 492 |
0.00192 (0.105) |
0.08 (0.441) |
0.197 (0.687) |
0.794 (1.00) |
0.216 (0.723) |
0.39 (0.945) |
0.82 (1.00) |
0.182 (0.654) |
0.213 (0.717) |
0.398 (0.946) |
0.761 (1.00) |
0.177 (0.654) |
0.46 (1.00) |
0.00963 (0.161) |
1 (1.00) |
1 (1.00) |
|
del 9p21 3 | 20 (4%) | 479 |
0.0264 (0.252) |
0.00912 (0.161) |
0.00033 (0.0423) |
0.179 (0.654) |
0.811 (1.00) |
0.202 (0.696) |
0.439 (1.00) |
0.679 (1.00) |
1 (1.00) |
1 (1.00) |
0.0601 (0.374) |
0.482 (1.00) |
0.124 (0.529) |
0.172 (0.653) |
0.113 (0.524) |
0.889 (1.00) |
0.379 (0.945) |
del 10p12 31 | 7 (1%) | 492 |
0.676 (1.00) |
0.58 (1.00) |
0.386 (0.945) |
0.739 (1.00) |
0.0149 (0.186) |
1 (1.00) |
0.39 (0.945) |
0.82 (1.00) |
1 (1.00) |
1 (1.00) |
0.759 (1.00) |
1 (1.00) |
0.0228 (0.229) |
0.708 (1.00) |
0.0843 (0.452) |
0.734 (1.00) |
1 (1.00) |
del 10q23 31 | 12 (2%) | 487 |
0.55 (1.00) |
0.198 (0.687) |
0.0525 (0.35) |
0.764 (1.00) |
0.0108 (0.161) |
1 (1.00) |
0.318 (0.86) |
0.335 (0.864) |
1 (1.00) |
1 (1.00) |
0.709 (1.00) |
0.535 (1.00) |
0.0275 (0.256) |
1 (1.00) |
0.00253 (0.113) |
1 (1.00) |
1 (1.00) |
del 13q12 13 | 18 (4%) | 481 |
0.501 (1.00) |
0.00641 (0.154) |
0.289 (0.827) |
1 (1.00) |
0.0716 (0.416) |
1 (1.00) |
0.276 (0.818) |
0.603 (1.00) |
0.406 (0.953) |
0.00273 (0.113) |
0.465 (1.00) |
1 (1.00) |
0.209 (0.71) |
0.812 (1.00) |
0.601 (1.00) |
1 (1.00) |
0.623 (1.00) |
del 16q23 3 | 6 (1%) | 493 |
0.0876 (0.459) |
0.0493 (0.341) |
0.00222 (0.109) |
0.0156 (0.189) |
0.685 (1.00) |
0.121 (0.529) |
1 (1.00) |
0.165 (0.639) |
1 (1.00) |
0.213 (0.717) |
0.0634 (0.381) |
0.0732 (0.424) |
0.847 (1.00) |
1 (1.00) |
0.431 (0.992) |
0.476 (1.00) |
1 (1.00) |
del 17p13 1 | 8 (2%) | 491 |
0.559 (1.00) |
0.885 (1.00) |
0.157 (0.618) |
0.0339 (0.28) |
0.503 (1.00) |
1 (1.00) |
1 (1.00) |
0.222 (0.729) |
0.0186 (0.207) |
0.273 (0.815) |
0.0583 (0.372) |
0.344 (0.882) |
0.898 (1.00) |
0.731 (1.00) |
0.0149 (0.186) |
0.588 (1.00) |
1 (1.00) |
amp 1p36 32 | 5 (1%) | 494 |
0.812 (1.00) |
0.325 (0.864) |
0.17 (0.653) |
0.232 (0.749) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0914 (0.462) |
1 (1.00) |
0.18 (0.654) |
0.3 (0.835) |
0.641 (1.00) |
0.91 (1.00) |
1 (1.00) |
0.0838 (0.452) |
0.00933 (0.161) |
1 (1.00) |
amp 1p32 3 | 5 (1%) | 494 |
0.903 (1.00) |
0.872 (1.00) |
0.233 (0.749) |
0.893 (1.00) |
1 (1.00) |
0.613 (1.00) |
0.0744 (0.427) |
1 (1.00) |
0.00814 (0.161) |
0.694 (1.00) |
0.393 (0.945) |
0.79 (1.00) |
0.665 (1.00) |
0.241 (0.76) |
1 (1.00) |
1 (1.00) |
|
amp 3p14 1 | 5 (1%) | 494 |
0.0106 (0.161) |
0.459 (1.00) |
0.0713 (0.416) |
0.285 (0.825) |
1 (1.00) |
0.0918 (0.462) |
1 (1.00) |
0.561 (1.00) |
1 (1.00) |
0.18 (0.654) |
1 (1.00) |
0.102 (0.496) |
0.574 (1.00) |
1 (1.00) |
0.659 (1.00) |
0.483 (1.00) |
1 (1.00) |
amp 4q22 1 | 7 (1%) | 492 |
0.0239 (0.237) |
0.0411 (0.317) |
0.0462 (0.336) |
0.574 (1.00) |
0.0679 (0.405) |
1 (1.00) |
0.681 (1.00) |
0.388 (0.945) |
0.182 (0.654) |
1 (1.00) |
1 (1.00) |
0.401 (0.946) |
0.029 (0.261) |
0.256 (0.778) |
0.772 (1.00) |
1 (1.00) |
1 (1.00) |
amp 6p22 3 | 3 (1%) | 496 |
0.000492 (0.0585) |
0.275 (0.817) |
0.333 (0.864) |
1 (1.00) |
0.123 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.082 (0.443) |
1 (1.00) |
0.607 (1.00) |
1 (1.00) |
0.253 (0.773) |
0.481 (1.00) |
1 (1.00) |
||
amp 6p12 2 | 3 (1%) | 496 |
0.00111 (0.0801) |
0.238 (0.751) |
0.332 (0.864) |
0.698 (1.00) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.082 (0.443) |
1 (1.00) |
0.61 (1.00) |
1 (1.00) |
0.332 (0.864) |
0.253 (0.773) |
0.533 (1.00) |
1 (1.00) |
1 (1.00) |
amp 9q31 1 | 6 (1%) | 493 |
0.113 (0.526) |
0.0464 (0.336) |
0.099 (0.483) |
0.314 (0.856) |
0.449 (1.00) |
1 (1.00) |
0.66 (1.00) |
0.248 (0.768) |
1 (1.00) |
1 (1.00) |
0.748 (1.00) |
1 (1.00) |
0.516 (1.00) |
1 (1.00) |
0.0113 (0.161) |
1 (1.00) |
1 (1.00) |
amp 13q34 | 7 (1%) | 492 |
0.697 (1.00) |
0.23 (0.744) |
0.171 (0.653) |
0.927 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
0.0104 (0.161) |
1 (1.00) |
1 (1.00) |
0.749 (1.00) |
1 (1.00) |
0.0775 (0.439) |
0.708 (1.00) |
0.633 (1.00) |
1 (1.00) |
1 (1.00) |
amp 14q12 | 13 (3%) | 486 |
0.479 (1.00) |
0.0353 (0.286) |
0.0252 (0.243) |
0.627 (1.00) |
0.0622 (0.377) |
1 (1.00) |
0.529 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
0.863 (1.00) |
0.558 (1.00) |
0.15 (0.596) |
0.274 (0.816) |
0.309 (0.85) |
0.403 (0.948) |
1 (1.00) |
amp 19p13 3 | 8 (2%) | 491 |
0.681 (1.00) |
0.124 (0.529) |
0.334 (0.864) |
0.377 (0.941) |
0.0679 (0.405) |
1 (1.00) |
0.445 (1.00) |
0.00769 (0.161) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.588 (1.00) |
0.0616 (0.377) |
0.48 (1.00) |
0.0941 (0.471) |
0.236 (0.751) |
1 (1.00) |
amp 22q11 21 | 7 (1%) | 492 |
0.852 (1.00) |
0.807 (1.00) |
0.226 (0.739) |
0.614 (1.00) |
0.724 (1.00) |
1 (1.00) |
0.198 (0.687) |
0.386 (0.945) |
1 (1.00) |
1 (1.00) |
0.749 (1.00) |
0.0137 (0.179) |
0.693 (1.00) |
1 (1.00) |
0.206 (0.704) |
0.321 (0.864) |
0.398 (0.945) |
amp xp11 22 | 8 (2%) | 491 |
0.0803 (0.441) |
0.0484 (0.339) |
0.0322 (0.275) |
0.401 (0.946) |
0.285 (0.825) |
1 (1.00) |
0.688 (1.00) |
0.219 (0.723) |
1 (1.00) |
0.273 (0.815) |
0.0252 (0.243) |
0.243 (0.762) |
0.118 (0.529) |
0.48 (1.00) |
0.185 (0.661) |
0.67 (1.00) |
1 (1.00) |
amp xq21 2 | 9 (2%) | 490 |
0.13 (0.544) |
0.0631 (0.381) |
0.0355 (0.286) |
0.162 (0.628) |
0.503 (1.00) |
1 (1.00) |
0.456 (1.00) |
0.335 (0.864) |
1 (1.00) |
1 (1.00) |
0.00949 (0.161) |
0.116 (0.529) |
0.396 (0.945) |
0.739 (1.00) |
0.18 (0.654) |
1 (1.00) |
1 (1.00) |
amp xq23 | 9 (2%) | 490 |
0.0986 (0.483) |
0.253 (0.773) |
0.0512 (0.343) |
0.611 (1.00) |
0.503 (1.00) |
1 (1.00) |
0.456 (1.00) |
0.334 (0.864) |
1 (1.00) |
1 (1.00) |
0.0189 (0.208) |
0.244 (0.762) |
0.195 (0.687) |
0.313 (0.854) |
0.16 (0.626) |
1 (1.00) |
1 (1.00) |
del 8q24 22 | 7 (1%) | 492 |
0.761 (1.00) |
0.4 (0.946) |
0.121 (0.529) |
0.797 (1.00) |
0.0302 (0.268) |
1 (1.00) |
0.0164 (0.193) |
0.13 (0.544) |
1 (1.00) |
1 (1.00) |
0.759 (1.00) |
0.53 (1.00) |
0.0421 (0.317) |
1 (1.00) |
0.28 (0.821) |
1 (1.00) |
1 (1.00) |
del 19p13 2 | 7 (1%) | 492 |
0.186 (0.664) |
0.162 (0.628) |
0.529 (1.00) |
1 (1.00) |
0.623 (1.00) |
1 (1.00) |
0.39 (0.945) |
1 (1.00) |
1 (1.00) |
0.0266 (0.252) |
1 (1.00) |
0.191 (0.678) |
0.46 (1.00) |
0.0029 (0.114) |
0.759 (1.00) |
1 (1.00) |
|
del 19p13 12 | 8 (2%) | 491 |
0.148 (0.592) |
0.256 (0.778) |
0.272 (0.814) |
0.881 (1.00) |
0.372 (0.931) |
1 (1.00) |
0.445 (1.00) |
1 (1.00) |
1 (1.00) |
0.0266 (0.252) |
0.602 (1.00) |
0.284 (0.825) |
1 (1.00) |
0.00805 (0.161) |
0.14 (0.57) |
1 (1.00) |
|
del 21q21 1 | 9 (2%) | 490 |
0.776 (1.00) |
0.103 (0.497) |
0.00792 (0.161) |
0.265 (0.796) |
0.751 (1.00) |
1 (1.00) |
0.706 (1.00) |
0.653 (1.00) |
1 (1.00) |
1 (1.00) |
0.623 (1.00) |
0.407 (0.953) |
0.721 (1.00) |
0.313 (0.854) |
0.479 (1.00) |
0.301 (0.835) |
1 (1.00) |
del xq23 | 4 (1%) | 495 |
0.779 (1.00) |
0.218 (0.723) |
0.00096 (0.08) |
0.0479 (0.339) |
0.0611 (0.376) |
0.0598 (0.374) |
1 (1.00) |
1 (1.00) |
0.112 (0.524) |
0.644 (1.00) |
0.317 (0.86) |
0.0421 (0.317) |
1 (1.00) |
0.667 (1.00) |
1 (1.00) |
||
del xq22 3 | 4 (1%) | 495 |
0.779 (1.00) |
0.218 (0.723) |
0.00118 (0.0819) |
0.0481 (0.339) |
0.0611 (0.376) |
0.0598 (0.374) |
1 (1.00) |
1 (1.00) |
0.112 (0.524) |
0.645 (1.00) |
0.317 (0.86) |
0.0421 (0.317) |
1 (1.00) |
0.667 (1.00) |
1 (1.00) |
||
amp 1p31 1 | 5 (1%) | 494 |
0.823 (1.00) |
0.608 (1.00) |
0.116 (0.529) |
0.707 (1.00) |
0.372 (0.931) |
1 (1.00) |
0.121 (0.529) |
0.0476 (0.339) |
1 (1.00) |
0.147 (0.592) |
1 (1.00) |
0.392 (0.945) |
0.823 (1.00) |
0.665 (1.00) |
0.409 (0.955) |
1 (1.00) |
1 (1.00) |
amp 2p16 1 | 3 (1%) | 496 |
0.692 (1.00) |
0.808 (1.00) |
0.504 (1.00) |
0.58 (1.00) |
1 (1.00) |
1 (1.00) |
0.175 (0.653) |
0.0854 (0.454) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.237 (0.751) |
1 (1.00) |
0.504 (1.00) |
0.485 (1.00) |
1 (1.00) |
|
amp 2q37 2 | 3 (1%) | 496 |
0.893 (1.00) |
0.536 (1.00) |
1 (1.00) |
0.391 (0.945) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
0.143 (0.58) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
||||
amp 6p21 2 | 4 (1%) | 495 |
0.0507 (0.343) |
0.877 (1.00) |
0.645 (1.00) |
0.636 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.712 (1.00) |
0.108 (0.511) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.127 (0.538) |
0.628 (1.00) |
0.207 (0.706) |
0.584 (1.00) |
0.333 (0.864) |
amp 6q12 | 3 (1%) | 496 |
0.824 (1.00) |
0.258 (0.781) |
0.606 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.568 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.763 (1.00) |
0.253 (0.773) |
1 (1.00) |
1 (1.00) |
|
amp 6q27 | 4 (1%) | 495 |
0.587 (1.00) |
0.393 (0.945) |
0.0896 (0.462) |
0.148 (0.592) |
0.623 (1.00) |
1 (1.00) |
0.578 (1.00) |
0.453 (1.00) |
0.108 (0.511) |
0.147 (0.592) |
0.096 (0.476) |
0.316 (0.859) |
0.521 (1.00) |
0.128 (0.542) |
0.146 (0.59) |
1 (1.00) |
1 (1.00) |
amp 9q22 31 | 6 (1%) | 493 |
0.685 (1.00) |
0.0858 (0.454) |
0.0977 (0.483) |
0.336 (0.864) |
0.449 (1.00) |
1 (1.00) |
0.195 (0.687) |
0.102 (0.496) |
1 (1.00) |
0.18 (0.654) |
0.497 (1.00) |
0.464 (1.00) |
0.544 (1.00) |
0.0991 (0.483) |
0.0542 (0.357) |
1 (1.00) |
1 (1.00) |
amp 10q25 1 | 4 (1%) | 495 |
0.723 (1.00) |
0.278 (0.82) |
0.738 (1.00) |
0.558 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.12 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0496 (0.341) |
0.287 (0.825) |
1 (1.00) |
0.295 (0.835) |
1 (1.00) |
|
amp 11p13 | 8 (2%) | 491 |
0.54 (1.00) |
0.888 (1.00) |
0.333 (0.864) |
0.828 (1.00) |
0.122 (0.529) |
1 (1.00) |
0.445 (1.00) |
0.516 (1.00) |
1 (1.00) |
1 (1.00) |
0.6 (1.00) |
0.59 (1.00) |
0.12 (0.529) |
0.298 (0.835) |
0.694 (1.00) |
0.173 (0.653) |
1 (1.00) |
amp 13q14 2 | 6 (1%) | 493 |
0.727 (1.00) |
0.468 (1.00) |
0.124 (0.529) |
0.702 (1.00) |
0.216 (0.723) |
1 (1.00) |
1 (1.00) |
0.25 (0.768) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0421 (0.317) |
1 (1.00) |
0.921 (1.00) |
0.485 (1.00) |
1 (1.00) |
amp 18q12 1 | 7 (1%) | 492 |
0.607 (1.00) |
0.938 (1.00) |
0.885 (1.00) |
1 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.75 (1.00) |
0.467 (1.00) |
0.0421 (0.317) |
0.46 (1.00) |
0.477 (1.00) |
1 (1.00) |
1 (1.00) |
amp 18q22 1 | 7 (1%) | 492 |
0.594 (1.00) |
0.966 (1.00) |
0.882 (1.00) |
0.652 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.748 (1.00) |
0.325 (0.864) |
0.302 (0.835) |
1 (1.00) |
0.762 (1.00) |
1 (1.00) |
1 (1.00) |
amp 21q21 3 | 6 (1%) | 493 |
0.604 (1.00) |
0.55 (1.00) |
0.848 (1.00) |
0.644 (1.00) |
0.0611 (0.376) |
1 (1.00) |
0.66 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.249 (0.768) |
0.0788 (0.439) |
0.0333 (0.278) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
amp xp11 21 | 9 (2%) | 490 |
0.277 (0.819) |
0.0315 (0.271) |
0.03 (0.268) |
0.351 (0.895) |
0.285 (0.825) |
1 (1.00) |
0.121 (0.529) |
0.0875 (0.459) |
1 (1.00) |
1 (1.00) |
0.0342 (0.28) |
0.0857 (0.454) |
0.131 (0.545) |
1 (1.00) |
0.205 (0.703) |
1 (1.00) |
0.456 (1.00) |
amp xq24 | 9 (2%) | 490 |
0.142 (0.579) |
0.0735 (0.424) |
0.031 (0.271) |
0.613 (1.00) |
0.175 (0.653) |
1 (1.00) |
0.121 (0.529) |
0.17 (0.653) |
1 (1.00) |
1 (1.00) |
0.0326 (0.277) |
0.295 (0.835) |
0.093 (0.467) |
0.739 (1.00) |
0.272 (0.814) |
1 (1.00) |
1 (1.00) |
amp xq24 | 9 (2%) | 490 |
0.13 (0.544) |
0.18 (0.654) |
0.0512 (0.343) |
0.56 (1.00) |
0.503 (1.00) |
1 (1.00) |
0.121 (0.529) |
0.336 (0.864) |
1 (1.00) |
1 (1.00) |
0.034 (0.28) |
0.294 (0.835) |
0.524 (1.00) |
0.313 (0.854) |
0.828 (1.00) |
1 (1.00) |
1 (1.00) |
del 1q24 2 | 3 (1%) | 496 |
0.642 (1.00) |
0.816 (1.00) |
0.333 (0.864) |
0.807 (1.00) |
0.248 (0.768) |
0.568 (1.00) |
0.227 (0.739) |
1 (1.00) |
1 (1.00) |
0.61 (1.00) |
1 (1.00) |
1 (1.00) |
0.12 (0.529) |
1 (1.00) |
|||
del 1q42 13 | 5 (1%) | 494 |
0.547 (1.00) |
0.469 (1.00) |
0.797 (1.00) |
0.513 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.561 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.641 (1.00) |
0.391 (0.945) |
1 (1.00) |
0.0444 (0.33) |
1 (1.00) |
0.0476 (0.339) |
del 4q34 3 | 5 (1%) | 494 |
0.562 (1.00) |
0.73 (1.00) |
0.123 (0.529) |
0.173 (0.653) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.562 (1.00) |
0.133 (0.551) |
1 (1.00) |
0.138 (0.564) |
1 (1.00) |
0.287 (0.825) |
0.38 (0.945) |
0.0549 (0.36) |
0.585 (1.00) |
1 (1.00) |
del 5p15 2 | 4 (1%) | 495 |
0.873 (1.00) |
0.178 (0.654) |
0.227 (0.739) |
0.634 (1.00) |
0.623 (1.00) |
1 (1.00) |
0.578 (1.00) |
0.0286 (0.259) |
1 (1.00) |
1 (1.00) |
0.425 (0.983) |
0.0694 (0.409) |
0.868 (1.00) |
0.338 (0.869) |
0.216 (0.723) |
0.321 (0.864) |
0.333 (0.864) |
del 7q34 | 4 (1%) | 495 |
0.764 (1.00) |
0.749 (1.00) |
0.476 (1.00) |
0.502 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.118 (0.529) |
1 (1.00) |
1 (1.00) |
0.645 (1.00) |
1 (1.00) |
0.468 (1.00) |
0.628 (1.00) |
0.0866 (0.456) |
1 (1.00) |
1 (1.00) |
del 8p23 2 | 4 (1%) | 495 |
0.821 (1.00) |
0.902 (1.00) |
0.175 (0.653) |
0.87 (1.00) |
0.123 (0.529) |
1 (1.00) |
0.0598 (0.374) |
0.457 (1.00) |
1 (1.00) |
1 (1.00) |
0.644 (1.00) |
1 (1.00) |
0.0788 (0.439) |
1 (1.00) |
0.75 (1.00) |
1 (1.00) |
|
del 8p22 | 4 (1%) | 495 |
0.821 (1.00) |
0.902 (1.00) |
0.175 (0.653) |
0.871 (1.00) |
0.123 (0.529) |
1 (1.00) |
0.0598 (0.374) |
0.455 (1.00) |
1 (1.00) |
1 (1.00) |
0.646 (1.00) |
1 (1.00) |
0.0788 (0.439) |
1 (1.00) |
0.75 (1.00) |
1 (1.00) |
|
del 8p12 | 4 (1%) | 495 |
0.821 (1.00) |
0.902 (1.00) |
0.176 (0.653) |
0.871 (1.00) |
0.123 (0.529) |
1 (1.00) |
0.0598 (0.374) |
0.456 (1.00) |
1 (1.00) |
1 (1.00) |
0.647 (1.00) |
1 (1.00) |
0.0788 (0.439) |
1 (1.00) |
0.75 (1.00) |
1 (1.00) |
|
del 10q21 2 | 12 (2%) | 487 |
0.555 (1.00) |
0.988 (1.00) |
0.849 (1.00) |
0.74 (1.00) |
0.221 (0.727) |
1 (1.00) |
0.529 (1.00) |
0.55 (1.00) |
0.292 (0.835) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.352 (0.896) |
0.761 (1.00) |
0.0375 (0.295) |
0.846 (1.00) |
0.61 (1.00) |
del 15q25 3 | 9 (2%) | 490 |
0.544 (1.00) |
0.896 (1.00) |
0.284 (0.825) |
0.536 (1.00) |
0.0372 (0.295) |
0.0918 (0.462) |
0.456 (1.00) |
0.0858 (0.454) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0773 (0.439) |
1 (1.00) |
0.155 (0.615) |
0.671 (1.00) |
0.398 (0.945) |
del 18q12 3 | 4 (1%) | 495 |
0.746 (1.00) |
0.682 (1.00) |
0.175 (0.653) |
0.308 (0.848) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
0.456 (1.00) |
1 (1.00) |
1 (1.00) |
0.643 (1.00) |
1 (1.00) |
0.332 (0.864) |
0.628 (1.00) |
0.635 (1.00) |
0.183 (0.657) |
|
del 22q12 3 | 89 (18%) | 410 |
0.395 (0.945) |
0.502 (1.00) |
0.615 (1.00) |
0.711 (1.00) |
0.393 (0.945) |
0.641 (1.00) |
0.428 (0.987) |
0.206 (0.703) |
0.482 (1.00) |
0.334 (0.864) |
0.425 (0.983) |
0.28 (0.821) |
0.604 (1.00) |
0.192 (0.678) |
0.56 (1.00) |
0.401 (0.946) |
1 (1.00) |
del 22q13 1 | 88 (18%) | 411 |
0.397 (0.945) |
0.498 (1.00) |
0.679 (1.00) |
0.699 (1.00) |
0.326 (0.864) |
0.641 (1.00) |
0.508 (1.00) |
0.199 (0.687) |
0.481 (1.00) |
0.332 (0.864) |
0.431 (0.992) |
0.281 (0.821) |
0.49 (1.00) |
0.233 (0.749) |
0.491 (1.00) |
0.402 (0.946) |
1 (1.00) |
del 22q13 2 | 88 (18%) | 411 |
0.397 (0.945) |
0.498 (1.00) |
0.677 (1.00) |
0.697 (1.00) |
0.326 (0.864) |
0.641 (1.00) |
0.508 (1.00) |
0.198 (0.687) |
0.481 (1.00) |
0.332 (0.864) |
0.432 (0.992) |
0.286 (0.825) |
0.49 (1.00) |
0.233 (0.749) |
0.491 (1.00) |
0.396 (0.945) |
1 (1.00) |
del 22q13 32 | 89 (18%) | 410 |
0.396 (0.945) |
0.528 (1.00) |
0.691 (1.00) |
0.714 (1.00) |
0.272 (0.814) |
0.645 (1.00) |
0.597 (1.00) |
0.137 (0.564) |
0.482 (1.00) |
0.334 (0.864) |
0.42 (0.978) |
0.279 (0.821) |
0.411 (0.958) |
0.192 (0.678) |
0.491 (1.00) |
0.423 (0.98) |
1 (1.00) |
P value = 0.00933 (Fisher's exact test), Q value = 0.16
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 325 |
AMP PEAK 1(1P36.32) MUTATED | 0 | 0 | 3 | 2 |
AMP PEAK 1(1P36.32) WILD-TYPE | 1 | 52 | 24 | 323 |
P value = 0.00814 (Fisher's exact test), Q value = 0.16
nPatients | NO | YES |
---|---|---|
ALL | 421 | 17 |
AMP PEAK 2(1P32.3) MUTATED | 2 | 2 |
AMP PEAK 2(1P32.3) WILD-TYPE | 419 | 15 |
P value = 4.67e-05 (Wilcoxon-test), Q value = 0.0082
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 4(1Q31.2) MUTATED | 29 | 59.9 (17.3) |
AMP PEAK 4(1Q31.2) WILD-TYPE | 470 | 46.4 (15.4) |
P value = 2e-05 (Fisher's exact test), Q value = 0.0048
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 4(1Q31.2) MUTATED | 7 | 0 | 12 | 1 | 9 | 0 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 275 | 52 | 97 | 1 | 37 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0028
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 141 | 166 | 167 | 23 |
AMP PEAK 4(1Q31.2) MUTATED | 2 | 4 | 18 | 5 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 139 | 162 | 149 | 18 |
P value = 0.00109 (Fisher's exact test), Q value = 0.08
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 4(1Q31.2) MUTATED | 5 | 22 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 219 | 203 |
P value = 0.00643 (Fisher's exact test), Q value = 0.15
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 4(1Q31.2) MUTATED | 0 | 25 | 0 | 4 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 9 | 331 | 98 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0028
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 4(1Q31.2) MUTATED | 14 | 4 | 10 | 1 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 118 | 14 | 320 | 0 |
P value = 0.00349 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 4(1Q31.2) MUTATED | 24 | 3.8 (1.5) |
AMP PEAK 4(1Q31.2) WILD-TYPE | 377 | 2.9 (1.6) |
P value = 0.00357 (Fisher's exact test), Q value = 0.11
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 325 |
AMP PEAK 4(1Q31.2) MUTATED | 1 | 1 | 5 | 21 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 0 | 51 | 22 | 304 |
P value = 2.47e-06 (Wilcoxon-test), Q value = 0.0021
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 5(1Q43) MUTATED | 29 | 61.7 (15.5) |
AMP PEAK 5(1Q43) WILD-TYPE | 470 | 46.3 (15.4) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0028
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 5(1Q43) MUTATED | 6 | 0 | 12 | 1 | 9 | 1 |
AMP PEAK 5(1Q43) WILD-TYPE | 276 | 52 | 97 | 1 | 37 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0028
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 141 | 166 | 167 | 23 |
AMP PEAK 5(1Q43) MUTATED | 2 | 3 | 18 | 6 |
AMP PEAK 5(1Q43) WILD-TYPE | 139 | 163 | 149 | 17 |
P value = 0.00277 (Fisher's exact test), Q value = 0.11
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 5(1Q43) MUTATED | 6 | 22 |
AMP PEAK 5(1Q43) WILD-TYPE | 218 | 203 |
P value = 0.00649 (Fisher's exact test), Q value = 0.15
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 5(1Q43) MUTATED | 0 | 25 | 0 | 4 |
AMP PEAK 5(1Q43) WILD-TYPE | 9 | 331 | 98 | 32 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0082
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 5(1Q43) MUTATED | 14 | 4 | 10 | 1 |
AMP PEAK 5(1Q43) WILD-TYPE | 118 | 14 | 320 | 0 |
P value = 0.00604 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 5(1Q43) MUTATED | 24 | 3.8 (1.5) |
AMP PEAK 5(1Q43) WILD-TYPE | 377 | 2.9 (1.6) |
P value = 0.00336 (Fisher's exact test), Q value = 0.11
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 325 |
AMP PEAK 5(1Q43) MUTATED | 1 | 1 | 5 | 21 |
AMP PEAK 5(1Q43) WILD-TYPE | 0 | 51 | 22 | 304 |
P value = 0.00498 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 10(3P22.3) MUTATED | 4 | 1 | 6.0 - 57.6 (12.2) |
AMP PEAK 10(3P22.3) WILD-TYPE | 493 | 13 | 0.1 - 169.3 (20.4) |
P value = 0.015 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 10(3P22.3) MUTATED | 4 | 66.5 (9.0) |
AMP PEAK 10(3P22.3) WILD-TYPE | 495 | 47.0 (15.7) |
P value = 0.0108 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 10(3P22.3) MUTATED | 1 | 2 | 0 | 0 | 0 | 1 |
AMP PEAK 10(3P22.3) WILD-TYPE | 281 | 50 | 109 | 2 | 46 | 5 |
P value = 0.0106 (logrank test), Q value = 0.16
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 11(3P14.1) MUTATED | 5 | 1 | 6.0 - 57.6 (21.4) |
AMP PEAK 11(3P14.1) WILD-TYPE | 492 | 13 | 0.1 - 169.3 (20.3) |
P value = 0.017 (logrank test), Q value = 0.2
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 12(4P16.1) MUTATED | 7 | 1 | 1.0 - 57.0 (13.8) |
AMP PEAK 12(4P16.1) WILD-TYPE | 490 | 13 | 0.1 - 169.3 (20.5) |
P value = 0.00733 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 12(4P16.1) MUTATED | 7 | 0 |
AMP PEAK 12(4P16.1) WILD-TYPE | 217 | 225 |
P value = 0.0125 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 12(4P16.1) MUTATED | 6 | 0.0 (0.0) |
AMP PEAK 12(4P16.1) WILD-TYPE | 377 | 3.7 (6.3) |
P value = 0.0239 (logrank test), Q value = 0.24
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 13(4Q22.1) MUTATED | 7 | 1 | 1.0 - 57.0 (14.7) |
AMP PEAK 13(4Q22.1) WILD-TYPE | 490 | 13 | 0.1 - 169.3 (20.4) |
P value = 0.0146 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 14(4Q28.2) MUTATED | 6 | 1 | 1.0 - 57.0 (14.1) |
AMP PEAK 14(4Q28.2) WILD-TYPE | 491 | 13 | 0.1 - 169.3 (20.4) |
P value = 0.0149 (Fisher's exact test), Q value = 0.19
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 14(4Q28.2) MUTATED | 6 | 0 |
AMP PEAK 14(4Q28.2) WILD-TYPE | 218 | 225 |
P value = 0.0228 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 14(4Q28.2) MUTATED | 5 | 0.0 (0.0) |
AMP PEAK 14(4Q28.2) WILD-TYPE | 378 | 3.7 (6.3) |
P value = 0.0201 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 15(4Q31.21) MUTATED | 8 | 1 |
AMP PEAK 15(4Q31.21) WILD-TYPE | 216 | 224 |
P value = 0.0063 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 15(4Q31.21) MUTATED | 9 | 0.1 (0.3) |
AMP PEAK 15(4Q31.21) WILD-TYPE | 374 | 3.8 (6.3) |
P value = 0.00733 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 16(4Q32.3) MUTATED | 7 | 0 |
AMP PEAK 16(4Q32.3) WILD-TYPE | 217 | 225 |
P value = 0.00691 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 16(4Q32.3) MUTATED | 7 | 0.0 (0.0) |
AMP PEAK 16(4Q32.3) WILD-TYPE | 376 | 3.7 (6.3) |
P value = 4.94e-05 (Wilcoxon-test), Q value = 0.0082
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 17(5P14.3) MUTATED | 23 | 61.1 (15.0) |
AMP PEAK 17(5P14.3) WILD-TYPE | 476 | 46.5 (15.5) |
P value = 0.00184 (Fisher's exact test), Q value = 0.11
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 17(5P14.3) MUTATED | 5 | 5 | 8 | 1 | 4 | 0 |
AMP PEAK 17(5P14.3) WILD-TYPE | 277 | 47 | 101 | 1 | 42 | 6 |
P value = 0.0181 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 17(5P14.3) MUTATED | 22 | 3.7 (1.6) |
AMP PEAK 17(5P14.3) WILD-TYPE | 379 | 2.9 (1.6) |
P value = 0.0208 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 18(5Q21.1) MUTATED | 23 | 54.7 (15.1) |
AMP PEAK 18(5Q21.1) WILD-TYPE | 476 | 46.8 (15.8) |
P value = 0.009 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 18(5Q21.1) MUTATED | 8 | 7 | 5 | 1 | 2 | 0 |
AMP PEAK 18(5Q21.1) WILD-TYPE | 274 | 45 | 104 | 1 | 44 | 6 |
P value = 0.0101 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 18(5Q21.1) MUTATED | 15 | 4 |
AMP PEAK 18(5Q21.1) WILD-TYPE | 209 | 221 |
P value = 0.00817 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 18(5Q21.1) MUTATED | 15 | 0.8 (1.9) |
AMP PEAK 18(5Q21.1) WILD-TYPE | 368 | 3.8 (6.3) |
P value = 0.00185 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 19(5Q21.1) MUTATED | 20 | 57.9 (13.7) |
AMP PEAK 19(5Q21.1) WILD-TYPE | 479 | 46.7 (15.7) |
P value = 9e-04 (Fisher's exact test), Q value = 0.079
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 19(5Q21.1) MUTATED | 5 | 7 | 6 | 1 | 1 | 0 |
AMP PEAK 19(5Q21.1) WILD-TYPE | 277 | 45 | 103 | 1 | 45 | 6 |
P value = 0.00196 (Fisher's exact test), Q value = 0.11
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 19(5Q21.1) MUTATED | 14 | 2 |
AMP PEAK 19(5Q21.1) WILD-TYPE | 210 | 223 |
P value = 0.00196 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 19(5Q21.1) MUTATED | 13 | 0.5 (1.9) |
AMP PEAK 19(5Q21.1) WILD-TYPE | 370 | 3.8 (6.3) |
P value = 0.0128 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 19(5Q21.1) MUTATED | 19 | 3.9 (1.8) |
AMP PEAK 19(5Q21.1) WILD-TYPE | 382 | 2.9 (1.6) |
P value = 0.0124 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 20(5Q33.1) MUTATED | 21 | 55.7 (14.8) |
AMP PEAK 20(5Q33.1) WILD-TYPE | 478 | 46.8 (15.7) |
P value = 0.00473 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 20(5Q33.1) MUTATED | 7 | 7 | 5 | 1 | 1 | 0 |
AMP PEAK 20(5Q33.1) WILD-TYPE | 275 | 45 | 104 | 1 | 45 | 6 |
P value = 0.0112 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 20(5Q33.1) MUTATED | 13 | 3 |
AMP PEAK 20(5Q33.1) WILD-TYPE | 211 | 222 |
P value = 0.0102 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 20(5Q33.1) MUTATED | 14 | 1.4 (3.8) |
AMP PEAK 20(5Q33.1) WILD-TYPE | 369 | 3.8 (6.3) |
P value = 0.0027 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 21(5Q35.2) MUTATED | 20 | 57.5 (13.8) |
AMP PEAK 21(5Q35.2) WILD-TYPE | 479 | 46.7 (15.7) |
P value = 0.00296 (Fisher's exact test), Q value = 0.11
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 21(5Q35.2) MUTATED | 5 | 6 | 6 | 1 | 2 | 0 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 277 | 46 | 103 | 1 | 44 | 6 |
P value = 0.0112 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 21(5Q35.2) MUTATED | 13 | 3 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 211 | 222 |
P value = 0.0135 (Fisher's exact test), Q value = 0.18
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 21(5Q35.2) MUTATED | 0 | 10 | 10 | 0 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 9 | 346 | 88 | 36 |
P value = 0.0117 (Fisher's exact test), Q value = 0.17
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 21(5Q35.2) MUTATED | 3 | 2 | 14 | 1 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 129 | 16 | 316 | 0 |
P value = 0.00615 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 21(5Q35.2) MUTATED | 14 | 0.9 (2.2) |
AMP PEAK 21(5Q35.2) WILD-TYPE | 369 | 3.8 (6.3) |
P value = 0.00806 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 21(5Q35.2) MUTATED | 19 | 4.0 (1.8) |
AMP PEAK 21(5Q35.2) WILD-TYPE | 382 | 2.9 (1.6) |
P value = 0.000492 (logrank test), Q value = 0.059
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 22(6P22.3) MUTATED | 3 | 1 | 13.6 - 34.4 (33.6) |
AMP PEAK 22(6P22.3) WILD-TYPE | 494 | 13 | 0.1 - 169.3 (20.3) |
P value = 1.46e-06 (logrank test), Q value = 0.0021
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 23(6P22.2) MUTATED | 4 | 2 | 17.4 - 57.0 (34.0) |
AMP PEAK 23(6P22.2) WILD-TYPE | 493 | 12 | 0.1 - 169.3 (20.2) |
P value = 0.00451 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 23(6P22.2) MUTATED | 4 | 74.2 (13.3) |
AMP PEAK 23(6P22.2) WILD-TYPE | 495 | 47.0 (15.6) |
P value = 0.00427 (logrank test), Q value = 0.13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 24(6P21.31) MUTATED | 3 | 1 | 33.6 - 36.5 (34.4) |
AMP PEAK 24(6P21.31) WILD-TYPE | 494 | 13 | 0.1 - 169.3 (20.2) |
P value = 0.0121 (Fisher's exact test), Q value = 0.17
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 24(6P21.31) MUTATED | 0 | 1 | 1 | 0 | 0 | 1 |
AMP PEAK 24(6P21.31) WILD-TYPE | 282 | 51 | 108 | 2 | 46 | 5 |
P value = 0.00111 (logrank test), Q value = 0.08
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 26(6P12.2) MUTATED | 3 | 1 | 29.7 - 34.4 (33.6) |
AMP PEAK 26(6P12.2) WILD-TYPE | 494 | 13 | 0.1 - 169.3 (20.2) |
P value = 0.0186 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 29(7Q11.21) MUTATED | 9 | 6 | 3 | 1 | 1 | 0 |
AMP PEAK 29(7Q11.21) WILD-TYPE | 273 | 46 | 106 | 1 | 45 | 6 |
P value = 0.00358 (Fisher's exact test), Q value = 0.11
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 29(7Q11.21) MUTATED | 13 | 2 |
AMP PEAK 29(7Q11.21) WILD-TYPE | 211 | 223 |
P value = 0.0041 (Fisher's exact test), Q value = 0.12
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 29(7Q11.21) MUTATED | 1 | 1 | 16 | 1 |
AMP PEAK 29(7Q11.21) WILD-TYPE | 131 | 17 | 314 | 0 |
P value = 0.00196 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 29(7Q11.21) MUTATED | 13 | 0.5 (1.9) |
AMP PEAK 29(7Q11.21) WILD-TYPE | 370 | 3.8 (6.3) |
P value = 0.00866 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 30(7Q21.11) MUTATED | 21 | 55.7 (13.4) |
AMP PEAK 30(7Q21.11) WILD-TYPE | 478 | 46.8 (15.8) |
P value = 0.0249 (Fisher's exact test), Q value = 0.24
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 30(7Q21.11) MUTATED | 9 | 6 | 4 | 1 | 1 | 0 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 273 | 46 | 105 | 1 | 45 | 6 |
P value = 0.0112 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 30(7Q21.11) MUTATED | 13 | 3 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 211 | 222 |
P value = 0.0217 (Fisher's exact test), Q value = 0.22
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 30(7Q21.11) MUTATED | 0 | 11 | 10 | 0 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 9 | 345 | 88 | 36 |
P value = 0.0141 (Fisher's exact test), Q value = 0.18
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 30(7Q21.11) MUTATED | 2 | 1 | 16 | 1 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 130 | 17 | 314 | 0 |
P value = 0.0011 (Wilcoxon-test), Q value = 0.08
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 30(7Q21.11) MUTATED | 14 | 0.5 (1.9) |
AMP PEAK 30(7Q21.11) WILD-TYPE | 369 | 3.8 (6.3) |
P value = 0.00849 (Fisher's exact test), Q value = 0.16
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 31(7Q31.1) MUTATED | 0 | 11 | 11 | 0 |
AMP PEAK 31(7Q31.1) WILD-TYPE | 9 | 345 | 87 | 36 |
P value = 0.0104 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 31(7Q31.1) MUTATED | 15 | 1.1 (2.6) |
AMP PEAK 31(7Q31.1) WILD-TYPE | 368 | 3.8 (6.3) |
P value = 0.0112 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 32(7Q34) MUTATED | 13 | 3 |
AMP PEAK 32(7Q34) WILD-TYPE | 211 | 222 |
P value = 0.0086 (Fisher's exact test), Q value = 0.16
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 32(7Q34) MUTATED | 0 | 11 | 11 | 0 |
AMP PEAK 32(7Q34) WILD-TYPE | 9 | 345 | 87 | 36 |
P value = 0.0122 (Fisher's exact test), Q value = 0.17
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 32(7Q34) MUTATED | 2 | 1 | 17 | 1 |
AMP PEAK 32(7Q34) WILD-TYPE | 130 | 17 | 313 | 0 |
P value = 0.00567 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 32(7Q34) MUTATED | 15 | 1.3 (3.5) |
AMP PEAK 32(7Q34) WILD-TYPE | 368 | 3.8 (6.3) |
P value = 0.0113 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 34(9Q31.1) MUTATED | 6 | 4.3 (0.8) |
AMP PEAK 34(9Q31.1) WILD-TYPE | 395 | 3.0 (1.6) |
P value = 0.0239 (Fisher's exact test), Q value = 0.24
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 35(9Q34.3) MUTATED | 0 | 2 | 5 | 0 |
AMP PEAK 35(9Q34.3) WILD-TYPE | 9 | 354 | 93 | 36 |
P value = 0.00926 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 35(9Q34.3) MUTATED | 7 | 4.5 (1.4) |
AMP PEAK 35(9Q34.3) WILD-TYPE | 394 | 3.0 (1.6) |
P value = 0.00951 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 36(10Q24.2) MUTATED | 3 | 74.0 (7.9) |
AMP PEAK 36(10Q24.2) WILD-TYPE | 496 | 47.0 (15.7) |
P value = 0.0213 (Fisher's exact test), Q value = 0.22
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 36(10Q24.2) MUTATED | 0 | 0 | 3 | 0 |
AMP PEAK 36(10Q24.2) WILD-TYPE | 9 | 356 | 95 | 36 |
P value = 0.000862 (Fisher's exact test), Q value = 0.079
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 39(12P11.1) MUTATED | 10 | 0 |
AMP PEAK 39(12P11.1) WILD-TYPE | 214 | 225 |
P value = 0.00153 (Fisher's exact test), Q value = 0.1
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 39(12P11.1) MUTATED | 0 | 6 | 10 | 0 |
AMP PEAK 39(12P11.1) WILD-TYPE | 9 | 350 | 88 | 36 |
P value = 0.00213 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 39(12P11.1) MUTATED | 9 | 0.0 (0.0) |
AMP PEAK 39(12P11.1) WILD-TYPE | 374 | 3.8 (6.3) |
P value = 0.000204 (Fisher's exact test), Q value = 0.031
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 40(12Q21.31) MUTATED | 12 | 0 |
AMP PEAK 40(12Q21.31) WILD-TYPE | 212 | 225 |
P value = 0.016 (Fisher's exact test), Q value = 0.19
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 40(12Q21.31) MUTATED | 0 | 8 | 9 | 0 |
AMP PEAK 40(12Q21.31) WILD-TYPE | 9 | 348 | 89 | 36 |
P value = 0.000661 (Wilcoxon-test), Q value = 0.065
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 40(12Q21.31) MUTATED | 11 | 0.0 (0.0) |
AMP PEAK 40(12Q21.31) WILD-TYPE | 372 | 3.8 (6.3) |
P value = 0.00301 (Fisher's exact test), Q value = 0.11
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 41(12Q23.1) MUTATED | 11 | 1 |
AMP PEAK 41(12Q23.1) WILD-TYPE | 213 | 224 |
P value = 0.0165 (Fisher's exact test), Q value = 0.19
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 41(12Q23.1) MUTATED | 0 | 8 | 9 | 0 |
AMP PEAK 41(12Q23.1) WILD-TYPE | 9 | 348 | 89 | 36 |
P value = 0.00618 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 41(12Q23.1) MUTATED | 11 | 0.6 (2.1) |
AMP PEAK 41(12Q23.1) WILD-TYPE | 372 | 3.8 (6.3) |
P value = 0.0104 (Fisher's exact test), Q value = 0.16
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 43(13Q34) MUTATED | 1 | 2 | 4 | 0 |
AMP PEAK 43(13Q34) WILD-TYPE | 8 | 354 | 94 | 36 |
P value = 0.0252 (Fisher's exact test), Q value = 0.24
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 44(14Q12) MUTATED | 3 | 5 | 4 | 0 | 1 | 0 |
AMP PEAK 44(14Q12) WILD-TYPE | 279 | 47 | 105 | 2 | 45 | 6 |
P value = 0.00314 (Fisher's exact test), Q value = 0.11
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 45(14Q32.31) MUTATED | 2 | 5 | 6 | 0 | 0 | 0 |
AMP PEAK 45(14Q32.31) WILD-TYPE | 280 | 47 | 103 | 2 | 46 | 6 |
P value = 0.0108 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 45(14Q32.31) MUTATED | 9 | 1 |
AMP PEAK 45(14Q32.31) WILD-TYPE | 215 | 224 |
P value = 0.0212 (Fisher's exact test), Q value = 0.22
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 45(14Q32.31) MUTATED | 0 | 5 | 7 | 1 |
AMP PEAK 45(14Q32.31) WILD-TYPE | 9 | 351 | 91 | 35 |
P value = 0.0175 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 45(14Q32.31) MUTATED | 9 | 0.7 (2.0) |
AMP PEAK 45(14Q32.31) WILD-TYPE | 374 | 3.8 (6.3) |
P value = 0.00733 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 50(18Q22.3) MUTATED | 7 | 0 |
AMP PEAK 50(18Q22.3) WILD-TYPE | 217 | 225 |
P value = 0.0125 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 50(18Q22.3) MUTATED | 6 | 0.0 (0.0) |
AMP PEAK 50(18Q22.3) WILD-TYPE | 377 | 3.7 (6.3) |
P value = 0.00769 (Fisher's exact test), Q value = 0.16
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 51(19P13.3) MUTATED | 0 | 2 | 6 | 0 |
AMP PEAK 51(19P13.3) WILD-TYPE | 9 | 354 | 92 | 36 |
P value = 0.0151 (Fisher's exact test), Q value = 0.19
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 52(20P13) MUTATED | 5 | 4 | 4 | 1 | 0 | 0 |
AMP PEAK 52(20P13) WILD-TYPE | 277 | 48 | 105 | 1 | 46 | 6 |
P value = 0.0201 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 52(20P13) MUTATED | 8 | 1 |
AMP PEAK 52(20P13) WILD-TYPE | 216 | 224 |
P value = 0.0153 (Fisher's exact test), Q value = 0.19
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 52(20P13) MUTATED | 0 | 6 | 8 | 0 |
AMP PEAK 52(20P13) WILD-TYPE | 9 | 350 | 90 | 36 |
P value = 0.00383 (Wilcoxon-test), Q value = 0.12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 52(20P13) MUTATED | 8 | 0.0 (0.0) |
AMP PEAK 52(20P13) WILD-TYPE | 375 | 3.8 (6.3) |
P value = 0.0108 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 53(20Q13.11) MUTATED | 9 | 1 |
AMP PEAK 53(20Q13.11) WILD-TYPE | 215 | 224 |
P value = 0.00348 (Fisher's exact test), Q value = 0.11
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 53(20Q13.11) MUTATED | 0 | 5 | 9 | 0 |
AMP PEAK 53(20Q13.11) WILD-TYPE | 9 | 351 | 89 | 36 |
P value = 0.0102 (Fisher's exact test), Q value = 0.16
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 53(20Q13.11) MUTATED | 1 | 0 | 12 | 1 |
AMP PEAK 53(20Q13.11) WILD-TYPE | 131 | 18 | 318 | 0 |
P value = 0.00213 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 53(20Q13.11) MUTATED | 9 | 0.0 (0.0) |
AMP PEAK 53(20Q13.11) WILD-TYPE | 374 | 3.8 (6.3) |
P value = 0.0215 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 54(20Q13.2) MUTATED | 14 | 56.6 (14.7) |
AMP PEAK 54(20Q13.2) WILD-TYPE | 485 | 46.9 (15.8) |
P value = 0.00353 (Fisher's exact test), Q value = 0.11
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 54(20Q13.2) MUTATED | 0 | 5 | 9 | 0 |
AMP PEAK 54(20Q13.2) WILD-TYPE | 9 | 351 | 89 | 36 |
P value = 0.00956 (Fisher's exact test), Q value = 0.16
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 54(20Q13.2) MUTATED | 1 | 0 | 12 | 1 |
AMP PEAK 54(20Q13.2) WILD-TYPE | 131 | 18 | 318 | 0 |
P value = 0.0224 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 54(20Q13.2) MUTATED | 9 | 1.0 (3.0) |
AMP PEAK 54(20Q13.2) WILD-TYPE | 374 | 3.7 (6.3) |
P value = 0.00832 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 55(20Q13.2) MUTATED | 4 | 4 | 4 | 1 | 0 | 0 |
AMP PEAK 55(20Q13.2) WILD-TYPE | 278 | 48 | 105 | 1 | 46 | 6 |
P value = 0.00402 (Fisher's exact test), Q value = 0.12
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 55(20Q13.2) MUTATED | 0 | 4 | 8 | 1 |
AMP PEAK 55(20Q13.2) WILD-TYPE | 9 | 352 | 90 | 35 |
P value = 0.0241 (Wilcoxon-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 55(20Q13.2) MUTATED | 8 | 0.5 (1.4) |
AMP PEAK 55(20Q13.2) WILD-TYPE | 375 | 3.7 (6.3) |
P value = 0.0137 (Fisher's exact test), Q value = 0.18
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 381 | 52 | 4 | 30 |
AMP PEAK 57(22Q11.21) MUTATED | 2 | 2 | 0 | 2 |
AMP PEAK 57(22Q11.21) WILD-TYPE | 379 | 50 | 4 | 28 |
P value = 0.0126 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 58(XP22.12) MUTATED | 10 | 58.5 (10.2) |
AMP PEAK 58(XP22.12) WILD-TYPE | 489 | 46.9 (15.8) |
P value = 0.00267 (Fisher's exact test), Q value = 0.11
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 58(XP22.12) MUTATED | 2 | 4 | 2 | 1 | 1 | 0 |
AMP PEAK 58(XP22.12) WILD-TYPE | 280 | 48 | 107 | 1 | 45 | 6 |
P value = 0.017 (Fisher's exact test), Q value = 0.2
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 381 | 52 | 4 | 30 |
AMP PEAK 58(XP22.12) MUTATED | 5 | 2 | 0 | 3 |
AMP PEAK 58(XP22.12) WILD-TYPE | 376 | 50 | 4 | 27 |
P value = 0.00487 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 59(XP11.4) MUTATED | 9 | 61.2 (10.9) |
AMP PEAK 59(XP11.4) WILD-TYPE | 490 | 46.9 (15.8) |
P value = 0.00836 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 59(XP11.4) MUTATED | 2 | 3 | 2 | 1 | 1 | 0 |
AMP PEAK 59(XP11.4) WILD-TYPE | 280 | 49 | 107 | 1 | 45 | 6 |
P value = 0.019 (Fisher's exact test), Q value = 0.21
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 59(XP11.4) MUTATED | 1 | 0 | 7 | 1 |
AMP PEAK 59(XP11.4) WILD-TYPE | 131 | 18 | 323 | 0 |
P value = 0.0252 (Fisher's exact test), Q value = 0.24
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 60(XP11.22) MUTATED | 2 | 0 | 5 | 1 |
AMP PEAK 60(XP11.22) WILD-TYPE | 130 | 18 | 325 | 0 |
P value = 0.00831 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 61(XP11.22) MUTATED | 8 | 61.8 (12.3) |
AMP PEAK 61(XP11.22) WILD-TYPE | 491 | 46.9 (15.7) |
P value = 0.018 (Fisher's exact test), Q value = 0.2
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 61(XP11.22) MUTATED | 1 | 0 | 6 | 1 |
AMP PEAK 61(XP11.22) WILD-TYPE | 131 | 18 | 324 | 0 |
P value = 0.0228 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 61(XP11.22) MUTATED | 5 | 0.0 (0.0) |
AMP PEAK 61(XP11.22) WILD-TYPE | 378 | 3.7 (6.3) |
P value = 0.00949 (Fisher's exact test), Q value = 0.16
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 63(XQ21.2) MUTATED | 1 | 1 | 6 | 1 |
AMP PEAK 63(XQ21.2) WILD-TYPE | 131 | 17 | 324 | 0 |
P value = 0.0148 (Fisher's exact test), Q value = 0.19
nPatients | FEMALE | MALE |
---|---|---|
ALL | 366 | 133 |
AMP PEAK 64(XQ22.3) MUTATED | 15 | 0 |
AMP PEAK 64(XQ22.3) WILD-TYPE | 351 | 133 |
P value = 0.00977 (Fisher's exact test), Q value = 0.16
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 64(XQ22.3) MUTATED | 1 | 0 | 13 | 1 |
AMP PEAK 64(XQ22.3) WILD-TYPE | 131 | 18 | 317 | 0 |
P value = 0.0189 (Fisher's exact test), Q value = 0.21
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 65(XQ23) MUTATED | 1 | 0 | 7 | 1 |
AMP PEAK 65(XQ23) WILD-TYPE | 131 | 18 | 323 | 0 |
P value = 0.0199 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 68(XQ28) MUTATED | 10 | 59.4 (16.2) |
AMP PEAK 68(XQ28) WILD-TYPE | 489 | 46.9 (15.7) |
P value = 0.00973 (Fisher's exact test), Q value = 0.16
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 68(XQ28) MUTATED | 1 | 1 | 7 | 1 |
AMP PEAK 68(XQ28) WILD-TYPE | 131 | 17 | 323 | 0 |
P value = 0.0108 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 3(2P23.1) MUTATED | 9 | 1 |
DEL PEAK 3(2P23.1) WILD-TYPE | 215 | 224 |
P value = 0.00338 (Fisher's exact test), Q value = 0.11
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
DEL PEAK 3(2P23.1) MUTATED | 1 | 4 | 7 | 0 |
DEL PEAK 3(2P23.1) WILD-TYPE | 8 | 352 | 91 | 36 |
P value = 0.0113 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 3(2P23.1) MUTATED | 9 | 0.3 (1.0) |
DEL PEAK 3(2P23.1) WILD-TYPE | 374 | 3.8 (6.3) |
P value = 0.00733 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 4(2Q22.1) MUTATED | 7 | 0 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 217 | 225 |
P value = 0.00533 (Fisher's exact test), Q value = 0.15
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
DEL PEAK 4(2Q22.1) MUTATED | 0 | 3 | 7 | 0 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 9 | 353 | 91 | 36 |
P value = 0.00691 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 4(2Q22.1) MUTATED | 7 | 0.0 (0.0) |
DEL PEAK 4(2Q22.1) WILD-TYPE | 376 | 3.7 (6.3) |
P value = 0.0157 (Fisher's exact test), Q value = 0.19
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 5(2Q37.3) MUTATED | 4 | 6 | 2 | 0 | 1 | 0 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 278 | 46 | 107 | 2 | 45 | 6 |
P value = 0.0201 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 5(2Q37.3) MUTATED | 8 | 1 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 216 | 224 |
P value = 0.0161 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 5(2Q37.3) MUTATED | 8 | 0.2 (0.7) |
DEL PEAK 5(2Q37.3) WILD-TYPE | 375 | 3.8 (6.3) |
P value = 0.00192 (logrank test), Q value = 0.11
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
DEL PEAK 11(6Q22.31) MUTATED | 6 | 2 | 7.8 - 98.6 (37.9) |
DEL PEAK 11(6Q22.31) WILD-TYPE | 491 | 12 | 0.1 - 169.3 (20.2) |
P value = 0.00963 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 11(6Q22.31) MUTATED | 6 | 4.6 (1.2) |
DEL PEAK 11(6Q22.31) WILD-TYPE | 395 | 3.0 (1.6) |
P value = 0.0164 (Fisher's exact test), Q value = 0.19
nPatients | FEMALE | MALE |
---|---|---|
ALL | 366 | 133 |
DEL PEAK 17(8Q24.22) MUTATED | 2 | 5 |
DEL PEAK 17(8Q24.22) WILD-TYPE | 364 | 128 |
P value = 0.00912 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 18(9P21.3) MUTATED | 20 | 56.8 (16.0) |
DEL PEAK 18(9P21.3) WILD-TYPE | 479 | 46.8 (15.7) |
P value = 0.00033 (Fisher's exact test), Q value = 0.042
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 18(9P21.3) MUTATED | 7 | 5 | 4 | 2 | 1 | 1 |
DEL PEAK 18(9P21.3) WILD-TYPE | 275 | 47 | 105 | 0 | 45 | 5 |
P value = 0.000578 (Wilcoxon-test), Q value = 0.064
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 19(9Q22.33) MUTATED | 27 | 59.2 (19.0) |
DEL PEAK 19(9Q22.33) WILD-TYPE | 472 | 46.5 (15.3) |
P value = 3e-04 (Fisher's exact test), Q value = 0.042
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 19(9Q22.33) MUTATED | 10 | 5 | 4 | 2 | 5 | 1 |
DEL PEAK 19(9Q22.33) WILD-TYPE | 272 | 47 | 105 | 0 | 41 | 5 |
P value = 0.0209 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 19(9Q22.33) MUTATED | 23 | 3.8 (1.9) |
DEL PEAK 19(9Q22.33) WILD-TYPE | 378 | 2.9 (1.6) |
P value = 0.0149 (Fisher's exact test), Q value = 0.19
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 20(10P12.31) MUTATED | 6 | 0 |
DEL PEAK 20(10P12.31) WILD-TYPE | 218 | 225 |
P value = 0.0228 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 20(10P12.31) MUTATED | 5 | 0.0 (0.0) |
DEL PEAK 20(10P12.31) WILD-TYPE | 378 | 3.7 (6.3) |
P value = 0.0108 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 22(10Q23.31) MUTATED | 9 | 1 |
DEL PEAK 22(10Q23.31) WILD-TYPE | 215 | 224 |
P value = 0.00253 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 22(10Q23.31) MUTATED | 9 | 4.6 (1.5) |
DEL PEAK 22(10Q23.31) WILD-TYPE | 392 | 2.9 (1.6) |
P value = 0.00266 (logrank test), Q value = 0.11
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
DEL PEAK 23(11P15.1) MUTATED | 7 | 1 | 1.4 - 44.1 (20.6) |
DEL PEAK 23(11P15.1) WILD-TYPE | 490 | 13 | 0.1 - 169.3 (20.3) |
P value = 0.000665 (Wilcoxon-test), Q value = 0.065
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 23(11P15.1) MUTATED | 7 | 68.1 (8.7) |
DEL PEAK 23(11P15.1) WILD-TYPE | 492 | 46.9 (15.7) |
P value = 0.00582 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 23(11P15.1) MUTATED | 1 | 1 | 4 | 1 | 0 | 0 |
DEL PEAK 23(11P15.1) WILD-TYPE | 281 | 51 | 105 | 1 | 46 | 6 |
P value = 0.0164 (Fisher's exact test), Q value = 0.19
nPatients | FEMALE | MALE |
---|---|---|
ALL | 366 | 133 |
DEL PEAK 23(11P15.1) MUTATED | 2 | 5 |
DEL PEAK 23(11P15.1) WILD-TYPE | 364 | 128 |
P value = 0.00797 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 23(11P15.1) MUTATED | 7 | 4.9 (1.9) |
DEL PEAK 23(11P15.1) WILD-TYPE | 394 | 2.9 (1.6) |
P value = 0.00641 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 24(13Q12.13) MUTATED | 18 | 58.1 (16.5) |
DEL PEAK 24(13Q12.13) WILD-TYPE | 481 | 46.8 (15.6) |
P value = 0.00273 (Fisher's exact test), Q value = 0.11
nPatients | NO | YES |
---|---|---|
ALL | 421 | 17 |
DEL PEAK 24(13Q12.13) MUTATED | 13 | 4 |
DEL PEAK 24(13Q12.13) WILD-TYPE | 408 | 13 |
P value = 0.0112 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 25(13Q22.1) MUTATED | 13 | 3 |
DEL PEAK 25(13Q22.1) WILD-TYPE | 211 | 222 |
P value = 0.00273 (Fisher's exact test), Q value = 0.11
nPatients | NO | YES |
---|---|---|
ALL | 421 | 17 |
DEL PEAK 25(13Q22.1) MUTATED | 13 | 4 |
DEL PEAK 25(13Q22.1) WILD-TYPE | 408 | 13 |
P value = 0.0252 (Wilcoxon-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 25(13Q22.1) MUTATED | 13 | 1.0 (2.3) |
DEL PEAK 25(13Q22.1) WILD-TYPE | 370 | 3.8 (6.3) |
P value = 0.00222 (Fisher's exact test), Q value = 0.11
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 29(16Q23.3) MUTATED | 0 | 0 | 3 | 0 | 2 | 1 |
DEL PEAK 29(16Q23.3) WILD-TYPE | 282 | 52 | 106 | 2 | 44 | 5 |
P value = 0.0156 (Fisher's exact test), Q value = 0.19
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 141 | 166 | 167 | 23 |
DEL PEAK 29(16Q23.3) MUTATED | 0 | 1 | 3 | 2 |
DEL PEAK 29(16Q23.3) WILD-TYPE | 141 | 165 | 164 | 21 |
P value = 0.0186 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 14 | 485 |
DEL PEAK 30(17P13.1) MUTATED | 2 | 6 |
DEL PEAK 30(17P13.1) WILD-TYPE | 12 | 479 |
P value = 0.0149 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 30(17P13.1) MUTATED | 7 | 4.5 (1.6) |
DEL PEAK 30(17P13.1) WILD-TYPE | 394 | 3.0 (1.6) |
P value = 0.0029 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 32(19P13.2) MUTATED | 4 | 5.8 (0.6) |
DEL PEAK 32(19P13.2) WILD-TYPE | 397 | 3.0 (1.6) |
P value = 0.00805 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 33(19P13.12) MUTATED | 5 | 5.2 (1.6) |
DEL PEAK 33(19P13.12) WILD-TYPE | 396 | 3.0 (1.6) |
P value = 0.00792 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 36(21Q21.1) MUTATED | 1 | 4 | 2 | 0 | 2 | 0 |
DEL PEAK 36(21Q21.1) WILD-TYPE | 281 | 48 | 107 | 2 | 44 | 6 |
P value = 0.00096 (Fisher's exact test), Q value = 0.08
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 41(XQ23) MUTATED | 0 | 4 | 0 | 0 | 0 | 0 |
DEL PEAK 41(XQ23) WILD-TYPE | 282 | 48 | 109 | 2 | 46 | 6 |
P value = 0.00118 (Fisher's exact test), Q value = 0.082
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 42(XQ22.3) MUTATED | 0 | 4 | 0 | 0 | 0 | 0 |
DEL PEAK 42(XQ22.3) WILD-TYPE | 282 | 48 | 109 | 2 | 46 | 6 |
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/15101913/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/THCA-TP/15092795/THCA-TP.merged_data.txt
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Number of patients = 499
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Number of significantly focal cnvs = 98
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Number of selected clinical features = 17
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Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.