Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (75%)	14	0.50689	0.793	0.2276	0.656	0.32578	0.707	0.48498	0.788	0.47575	0.782	0.29658	0.707	0.18781	0.624	0.18822	0.624	0.33203	0.707	0.26851	0.689
amp_2p14	28 (50%)	28	0.55964	0.805	0.0255	0.316	1	1	0.48894	0.788	0.0072599	0.261	0.079169	0.451	0.48797	0.788	0.24687	0.677	0.22373	0.656	0.36017	0.708
amp_2q13	29 (52%)	27	0.5317	0.805	0.01566	0.292	0.56428	0.805	0.48728	0.788	0.04599	0.405	0.31773	0.707	1	1	0.66446	0.881	0.73806	0.909	0.72836	0.909
amp_3p25.1	20 (36%)	36	0.01211	0.279	0.51398	0.8	0.12187	0.527	0.052779	0.423	0.30026	0.707	0.11307	0.527	0.2277	0.656	0.064639	0.423	0.12188	0.527	0.067319	0.423
amp_3q26.2	37 (66%)	19	0.0059299	0.226	0.00484	0.223	0.32998	0.707	0.12507	0.53	0.089329	0.478	0.16165	0.594	0.34504	0.707	0.24026	0.675	0.46318	0.768	0.18196	0.62
amp_4p16.3	25 (45%)	31	0.02736	0.321	0.12993	0.543	0.56607	0.805	0.0098199	0.279	0.38774	0.711	0.18819	0.624	0.97596	1	0.28635	0.707	0.50452	0.792	0.52981	0.805
amp_5p13.2	26 (46%)	30	0.00194	0.135	0.57338	0.812	0.020569	0.294	0.30928	0.707	0.24743	0.677	0.057309	0.423	0.92896	0.992	0.04655	0.405	0.4771	0.782	0.17354	0.603
amp_6p24.2	37 (66%)	19	0.10753	0.527	0.97213	1	0.22646	0.656	0.32918	0.707	0.68868	0.901	0.35591	0.707	0.87509	0.976	0.4985	0.792	0.87531	0.976	0.76803	0.909
amp_8p11.21	33 (59%)	23	0.54963	0.805	0.62624	0.855	0.56428	0.805	0.091849	0.485	0.67896	0.895	0.55945	0.805	0.62517	0.855	1	1	0.77862	0.912	0.60066	0.835
amp_8q11.23	38 (68%)	18	0.01328	0.279	0.22364	0.656	0.13763	0.55	0.20219	0.646	0.19864	0.641	0.16692	0.597	0.77219	0.909	0.92232	0.989	0.61956	0.855	0.85822	0.971
amp_8q24.21	42 (75%)	14	0.00199	0.135	0.75773	0.909	0.74626	0.909	0.95175	1	0.18855	0.624	0.34038	0.707	0.03874	0.387	0.03201	0.343	0.0057099	0.226	0.01467	0.292
amp_8q24.21	40 (71%)	16	0.00054999	0.0945	0.35478	0.707	0.75831	0.909	0.64567	0.869	0.077159	0.446	0.11735	0.527	0.04584	0.405	0.062699	0.423	0.0078399	0.266	0.0215	0.294
amp_10q22.2	26 (46%)	30	0.31252	0.707	0.49076	0.788	0.01893	0.294	0.34338	0.707	0.96456	1	0.92256	0.989	0.72656	0.909	0.74017	0.909	1	1	0.42609	0.74
amp_11q13.1	19 (34%)	37	0.7787	0.912	0.64847	0.871	0.75831	0.909	0.26877	0.689	0.32752	0.707	0.30136	0.707	0.76095	0.909	1	1	0.82149	0.946	0.97385	1
amp_12q12	22 (39%)	34	0.03133	0.343	0.10545	0.527	0.37416	0.711	0.077529	0.446	0.25543	0.679	0.40229	0.723	0.92687	0.992	1	1	0.88321	0.979	0.95282	1
amp_12q15	17 (30%)	39	0.58722	0.821	0.37684	0.711	0.21083	0.65	0.70726	0.909	0.25558	0.679	0.70184	0.909	0.7986	0.93	0.16823	0.597	1	1	0.22805	0.656
amp_13q31.3	25 (45%)	31	0.52802	0.805	0.44202	0.753	1	1	0.38655	0.711	0.13795	0.55	0.11618	0.527	0.086389	0.467	0.03737	0.386	0.00253	0.154	0.053529	0.423
amp_16p11.2	20 (36%)	36	0.02715	0.321	0.27946	0.696	0.75831	0.909	0.066559	0.423	0.65453	0.876	0.072549	0.439	0.76204	0.909	0.41252	0.734	0.51739	0.803	0.20761	0.648
amp_17q12	27 (48%)	29	0.44583	0.755	0.18913	0.624	1	1	0.76115	0.909	0.33603	0.707	0.45725	0.766	0.34239	0.707	0.78387	0.916	0.60727	0.842	1	1
amp_17q25.1	32 (57%)	24	0.49518	0.789	0.01149	0.279	0.38811	0.711	0.72436	0.909	0.63389	0.859	0.30827	0.707	0.68729	0.901	0.71883	0.909	0.3216	0.707	0.65689	0.877
amp_19p13.2	19 (34%)	37	0.33329	0.707	0.27291	0.692	0.75831	0.909	0.66342	0.881	0.79609	0.929	0.32233	0.707	0.34653	0.707	0.27854	0.696	0.14688	0.567	0.26842	0.689
amp_19q12	45 (80%)	11	0.00118	0.135	0.00011	0.0671	0.71546	0.909	0.24884	0.678	0.19323	0.629	0.01897	0.294	0.64466	0.869	0.50072	0.792	0.23294	0.664	0.43216	0.745
amp_20q11.21	48 (86%)	8	0.00423	0.215	0.16786	0.597	1	1	0.41657	0.734	0.54266	0.805	0.42039	0.737	0.16159	0.594	0.13941	0.552	0.055859	0.423	0.27086	0.691
amp_20q11.21	48 (86%)	8	0.099899	0.512	0.25563	0.679	0.43642	0.749	0.4151	0.734	0.19372	0.629	0.3141	0.707	0.17771	0.612	0.3521	0.707	0.37207	0.711	0.55842	0.805
amp_xp11.21	28 (50%)	28	0.058849	0.423	0.56618	0.805	0.38057	0.711	0.15774	0.592	0.04704	0.405	0.30236	0.707	0.02788	0.321	0.10211	0.519	0.11239	0.527	0.064239	0.423
del_1p36.21	19 (34%)	37	0.72536	0.909	0.379	0.711	0.35508	0.707	0.89716	0.979	0.34651	0.707	0.082239	0.456	0.13274	0.547	0.02424	0.316	0.073209	0.439	0.058949	0.423
del_2q22.1	11 (20%)	45	0.91539	0.989	0.54337	0.805	0.73101	0.909	0.47517	0.782	0.52868	0.805	0.16773	0.597	0.55559	0.805	0.55384	0.805	0.25713	0.679	0.92188	0.989
del_3p14.2	37 (66%)	19	0.72638	0.909	0.70152	0.909	1	1	0.76709	0.909	0.80892	0.94	0.47301	0.782	0.62666	0.855	0.76771	0.909	0.86983	0.974	0.90116	0.979
del_3q13.31	22 (39%)	34	0.20432	0.648	0.04504	0.405	0.24513	0.677	0.1196	0.527	0.87966	0.978	0.067159	0.423	1	1	0.45924	0.766	0.35604	0.707	0.82431	0.946
del_4q22.1	37 (66%)	19	0.16372	0.597	0.055969	0.423	0.22646	0.656	0.23619	0.667	0.02496	0.316	0.15471	0.588	0.01261	0.279	0.12596	0.53	0.03115	0.343	0.057909	0.423
del_4q34.3	37 (66%)	19	0.01833	0.294	0.02002	0.294	0.12079	0.527	0.13448	0.55	0.01148	0.279	0.04026	0.39	0.00315	0.175	0.19992	0.642	0.0051199	0.223	0.12533	0.53
del_5q12.1	26 (46%)	30	0.63044	0.857	0.092309	0.485	1	1	0.15991	0.594	0.58572	0.821	0.45322	0.762	0.54729	0.805	0.29408	0.707	0.25679	0.679	0.4471	0.755
del_6q26	10 (18%)	46	0.41454	0.734	0.53899	0.805	1	1	0.080849	0.456	0.12235	0.527	0.69979	0.909	0.329	0.707	0.29514	0.707	0.81569	0.944	0.31435	0.707
del_7q11.22	12 (21%)	44	0.71392	0.909	0.50907	0.794	1	1	0.72196	0.909	0.75783	0.909	0.83571	0.953	0.86117	0.973	0.53132	0.805	0.8423	0.959	0.7485	0.909
del_7q36.2	20 (36%)	36	0.3283	0.707	0.16966	0.598	0.75831	0.909	0.51861	0.803	0.4943	0.789	0.27691	0.696	0.40325	0.723	0.04459	0.405	0.32494	0.707	0.082229	0.456
del_8p23.2	33 (59%)	23	0.00145	0.135	0.42801	0.742	0.24513	0.677	0.27328	0.692	0.35584	0.707	0.3572	0.707	0.74022	0.909	0.32832	0.707	0.59879	0.834	0.55372	0.805
del_9p23	34 (61%)	22	0.29994	0.707	0.1226	0.527	0.76341	0.909	0.01582	0.292	0.63697	0.862	0.3235	0.707	0.50534	0.792	0.42968	0.742	0.49042	0.788	0.1198	0.527
del_9q21.13	39 (70%)	17	0.34163	0.707	0.32431	0.707	0.52798	0.805	0.44909	0.757	0.20936	0.648	0.25574	0.679	0.48022	0.783	0.31757	0.707	0.74183	0.909	0.39844	0.719
del_9q33.3	39 (70%)	17	0.67151	0.889	0.074549	0.442	0.74626	0.909	0.04006	0.39	0.11428	0.527	0.13774	0.55	0.96723	1	0.11448	0.527	1	1	0.25837	0.679
del_10q23.31	20 (36%)	36	0.15073	0.578	0.1067	0.527	0.56239	0.805	0.98098	1	0.12257	0.527	0.24264	0.677	0.75986	0.909	0.85275	0.969	0.77019	0.909	0.82534	0.946
del_11p15.5	25 (45%)	31	0.58723	0.821	0.76737	0.909	0.56428	0.805	0.49214	0.788	0.89971	0.979	0.89395	0.979	0.726	0.909	0.8951	0.979	0.82875	0.948	0.91678	0.989
del_11q14.1	26 (46%)	30	0.44633	0.755	0.17191	0.603	0.56607	0.805	0.22944	0.657	1	1	0.92261	0.989	0.26674	0.689	0.26319	0.686	0.22599	0.656	0.073369	0.439
del_11q23.2	26 (46%)	30	1	1	0.11552	0.527	0.77384	0.91	0.22727	0.656	0.34585	0.707	0.86743	0.974	0.36145	0.708	0.86305	0.973	0.39534	0.717	0.35707	0.707
del_12q23.1	20 (36%)	36	0.87993	0.978	0.89948	0.979	0.37521	0.711	0.062729	0.423	0.6531	0.876	0.75094	0.909	0.94979	1	0.33763	0.707	1	1	0.54834	0.805
del_12q24.31	20 (36%)	36	0.44187	0.753	0.8223	0.946	1	1	0.00156	0.135	0.15512	0.588	0.25624	0.679	0.56184	0.805	0.88816	0.979	0.36891	0.711	0.93122	0.993
del_13q12.11	30 (54%)	26	0.29657	0.707	0.01916	0.294	0.24431	0.677	0.071299	0.439	0.37226	0.711	0.20635	0.648	0.72576	0.909	0.02587	0.316	0.3453	0.707	0.063439	0.423
del_13q14.2	32 (57%)	24	0.43687	0.749	0.00052999	0.0945	0.56428	0.805	0.41429	0.734	0.01306	0.279	0.02022	0.294	0.47857	0.783	0.1582	0.592	0.04718	0.405	0.19401	0.629
del_14q21.1	28 (50%)	28	0.89122	0.979	0.0495	0.419	0.77036	0.909	0.13644	0.55	0.064139	0.423	0.056079	0.423	0.37552	0.711	0.38316	0.711	0.83144	0.95	0.36536	0.71
del_15q11.2	41 (73%)	15	0.74731	0.909	0.097309	0.507	1	1	0.58779	0.821	0.55248	0.805	0.62486	0.855	0.14392	0.559	0.90658	0.982	0.32543	0.707	0.7066	0.909
del_15q15.1	43 (77%)	13	0.16763	0.597	0.03165	0.343	0.32998	0.707	0.04101	0.391	0.34605	0.707	0.76805	0.909	0.11937	0.527	0.34828	0.707	0.066949	0.423	0.20834	0.648
del_16p13.3	33 (59%)	23	0.66418	0.881	0.55061	0.805	1	1	0.26131	0.684	0.56811	0.806	0.22754	0.656	0.34889	0.707	0.38735	0.711	0.3835	0.711	0.71379	0.909
del_16q23.1	39 (70%)	17	0.62783	0.855	0.42117	0.737	1	1	0.27807	0.696	0.39611	0.717	0.39416	0.717	0.86661	0.974	0.81191	0.942	0.17399	0.603	0.62201	0.855
del_17p13.1	42 (75%)	14	0.1407	0.554	0.055899	0.423	0.50498	0.792	0.23598	0.667	0.060589	0.423	0.42298	0.737	0.13268	0.547	0.18311	0.621	0.02033	0.294	0.086549	0.467
del_17q21.32	19 (34%)	37	0.14317	0.559	0.76423	0.909	1	1	0.75412	0.909	0.1787	0.612	0.066669	0.423	0.22641	0.656	0.20832	0.648	0.3847	0.711	0.73972	0.909
del_18q22.2	26 (46%)	30	0.33109	0.707	0.34092	0.707	0.56121	0.805	0.5351	0.805	0.50431	0.792	0.36124	0.708	0.02171	0.294	0.077449	0.446	0.01324	0.279	0.02441	0.316
del_19p13.3	47 (84%)	9	0.063199	0.423	0.02025	0.294	0.68384	0.899	0.1212	0.527	0.099779	0.512	0.37709	0.711	0.01522	0.292	0.084149	0.462	0.0090699	0.279	0.11395	0.527
del_19q13.33	17 (30%)	39	0.31736	0.707	0.0091799	0.279	0.22227	0.656	0.063309	0.423	0.00061999	0.0945	0.0366	0.385	0.22281	0.656	0.03824	0.387	0.36699	0.711	0.01186	0.279
del_20p12.1	9 (16%)	47	0.53693	0.805	0.70023	0.909	0.67795	0.895	0.02069	0.294	0.39235	0.717	0.52741	0.805	0.22313	0.656	0.33902	0.707	0.36562	0.71	0.4636	0.768
del_22q13.31	40 (71%)	16	0.29789	0.707	0.40813	0.73	0.051675	0.423	0.31047	0.707	0.89356	0.979	0.45938	0.766	0.57701	0.815	0.35341	0.707	0.85731	0.971	0.58822	0.821
del_xp21.1	18 (32%)	38	0.93602	0.996	0.42166	0.737	1	1	0.89577	0.979	0.81911	0.946	0.87018	0.974	0.36223	0.708	1	1	1	1	0.90158	0.979
del_xq25	23 (41%)	33	0.62276	0.855	0.30713	0.707	0.56607	0.805	0.067999	0.423	0.11335	0.527	0.89793	0.979	0.72611	0.909	0.56643	0.805	0.28125	0.697	0.38528	0.711