tcga_participant_barcode CLI_years_to_birth CLI_vital_status CLI_days_to_death CLI_days_to_last_followup CLI_neoplasm_diseasestage CLI_pathology_T_stage CLI_pathology_N_stage CLI_pathology_M_stage CLI_dcc_upload_date CLI_gender CLI_radiations_radiation_regimenindication CLI_race CLI_ethnicity CLI_batch_number CLUS_CN_cNMF CLUS_Methlyation_cNMF CLUS_mRNAseq_cNMF CLUS_mRNAseq_cHierarchical CLUS_miRseq_cNMF CLUS_miRseq_cHierarchical CLUS_miRseq_Mature_cNMF CLUS_miRseq_Mature_cHierarchical SMG_mutsig2.0_BAP1 SMG_mutsig2.0_CYSLTR2 SMG_mutsig2.0_EIF1AX SMG_mutsig2.0_GNA11 SMG_mutsig2.0_GNAQ SMG_mutsig2.0_PRMT8 SMG_mutsig2.0_RAB38_cosmic SMG_mutsig2.0_RGAG4_cosmic SMG_mutsig2.0_SF3B1 SMG_mutsig2.0_TRDN SMG_mutsig.CV_BAP1 SMG_mutsig.CV_EIF1AX SMG_mutsig.CV_GNA11 SMG_mutsig.CV_GNAQ SMG_mutsig.CV_RAB38_cosmic SMG_mutsig.CV_RGAG4_cosmic SMG_mutsig.2CV_BAP1 SMG_mutsig.2CV_CYSLTR2 SMG_mutsig.2CV_EIF1AX SMG_mutsig.2CV_GNA11 SMG_mutsig.2CV_GNAQ SMG_mutsig.2CV_MAPKAPK5 SMG_mutsig.2CV_PRMT8 SMG_mutsig.2CV_RAB38_cosmic SMG_mutsig.2CV_RGAG4_cosmic SMG_mutsig.2CV_SF3B1 rate_non rate_sil SMG_BAP1_mRNA SMG_CYSLTR2_mRNA SMG_EIF1AX_mRNA SMG_GNA11_mRNA SMG_GNAQ_mRNA SMG_MAPKAPK5_mRNA SMG_RAB38_mRNA SMG_RGAG4_mRNA SMG_SF3B1_mRNA SMG_TRDN_mRNA Amp_6p24.3 Amp_8q24.22 Amp_17q25.3 Del_1p36.21 Del_2q37.2 Del_3p25.2 Del_3p25.1 Del_3p22.2 Del_3p14.2 Del_3q24 Del_3q29 Del_5q23.1 Del_6q22.31 Del_6q27 Del_8p11.22 Del_8q11.21 Del_11p15.1 Del_11q24.3 Del_16q12.1 Del_16q23.3 Del_16q24.3 Del_17q12 CN_10p_Amp CN_10q_Amp CN_11p_Amp CN_11q_Amp CN_12p_Amp CN_12q_Amp CN_13q_Amp CN_14q_Amp CN_15q_Amp CN_16p_Amp CN_16q_Amp CN_17p_Amp CN_17q_Amp CN_18p_Amp CN_18q_Amp CN_19p_Amp CN_19q_Amp CN_1p_Amp CN_1q_Amp CN_20p_Amp CN_20q_Amp CN_21q_Amp CN_22q_Amp CN_2p_Amp CN_2q_Amp CN_3p_Amp CN_3q_Amp CN_4p_Amp CN_4q_Amp CN_5p_Amp CN_5q_Amp CN_6p_Amp CN_6q_Amp CN_7p_Amp CN_7q_Amp CN_8p_Amp CN_8q_Amp CN_9p_Amp CN_9q_Amp CN_Xp_Amp CN_Xq_Amp CN_10p_Del CN_10q_Del CN_11p_Del CN_11q_Del CN_12p_Del CN_12q_Del CN_13q_Del CN_14q_Del CN_15q_Del CN_16p_Del CN_16q_Del CN_17p_Del CN_17q_Del CN_18p_Del CN_18q_Del CN_19p_Del CN_19q_Del CN_1p_Del CN_1q_Del CN_20p_Del CN_20q_Del CN_21q_Del CN_22q_Del CN_2p_Del CN_2q_Del CN_3p_Del CN_3q_Del CN_4p_Del CN_4q_Del CN_5p_Del CN_5q_Del CN_6p_Del CN_6q_Del CN_7p_Del CN_7q_Del CN_8p_Del CN_8q_Del CN_9p_Del CN_9q_Del CN_Xp_Del CN_Xq_Del Amp_ASPSCR1_17q25.3_mRNA Amp_BPTF_17q25.3_mRNA Amp_BRIP1_17q25.3_mRNA Amp_CANT1_17q25.3_mRNA Amp_CBX8_17q25.3_mRNA Amp_CD79B_17q25.3_mRNA Amp_CLTC_17q25.3_mRNA Amp_DDX5_17q25.3_mRNA Amp_DEK_6p24.3_mRNA Amp_EXT1_8q24.22_mRNA Amp_FOXK2_17q25.3_mRNA Amp_H3F3B_17q25.3_mRNA Amp_HLF_17q25.3_mRNA Amp_IRF4_6p24.3_mRNA Amp_MSI2_17q25.3_mRNA Amp_MYC_8q24.22_mRNA Amp_NDRG1_8q24.22_mRNA Amp_NEDD9_6p24.3_mRNA Amp_PARP10_8q24.22_mRNA Amp_PRKAR1A_17q25.3_mRNA Amp_RAD21_8q24.22_mRNA Amp_RECQL4_8q24.22_mRNA Amp_RNF43_17q25.3_mRNA Amp_TUBD1_17q25.3_mRNA Del_ARHGEF12_11q24.3_mRNA Del_ARID1A_1p36.21_mRNA Del_BRCA1_17q12_mRNA Del_CAMTA1_1p36.21_mRNA Del_CBL_11q24.3_mRNA Del_CD74_5q23.1_mRNA Del_CDK12_17q12_mRNA Del_CHCHD7_8q11.21_mRNA Del_COL1A1_17q12_mRNA Del_COX6C_8q11.21_mRNA Del_CSF3R_1p36.21_mRNA Del_CSMD1_8q11.21_mRNA Del_DDX6_11q24.3_mRNA Del_EBF1_5q23.1_mRNA Del_ERBB2_17q12_mRNA Del_ETV4_17q12_mRNA Del_EXT1_8q11.21_mRNA Del_FANCA_16q24.3_mRNA Del_FGFR1_8q11.21_mRNA Del_FHIT_3p14.2_mRNA Del_FLI1_11q24.3_mRNA Del_HEY1_8q11.21_mRNA Del_HOOK3_8q11.21_mRNA Del_ITK_5q23.1_mRNA Del_KCNJ5_11q24.3_mRNA Del_LASP1_17q12_mRNA Del_LCK_1p36.21_mRNA Del_MDS2_1p36.21_mRNA Del_MLLT6_17q12_mRNA Del_MPL_1p36.21_mRNA Del_MUTYH_1p36.21_mRNA Del_MYC_8q11.21_mRNA Del_NCOA2_8q11.21_mRNA Del_NDRG1_8q11.21_mRNA Del_NF1_17q12_mRNA Del_PAFAH1B2_11q24.3_mRNA Del_PARP10_8q11.21_mRNA Del_PAX7_1p36.21_mRNA Del_PCM1_8q11.21_mRNA Del_PCSK7_11q24.3_mRNA Del_PDGFRB_5q23.1_mRNA Del_PLAG1_8q11.21_mRNA Del_PPP2R2A_8q11.21_mRNA Del_PRDM16_1p36.21_mRNA Del_RAD21_8q11.21_mRNA Del_RARA_17q12_mRNA Del_RECQL4_8q11.21_mRNA Del_RPL22_1p36.21_mRNA Del_SDHB_1p36.21_mRNA Del_SFPQ_1p36.21_mRNA Del_SMARCE1_17q12_mRNA Del_SOX17_8q11.21_mRNA Del_STAT3_17q12_mRNA Del_STAT5B_17q12_mRNA Del_SUZ12_17q12_mRNA Del_TAF15_17q12_mRNA Del_TAL1_1p36.21_mRNA Del_TCEA1_8q11.21_mRNA Del_THRAP3_1p36.21_mRNA Del_TNFRSF14_1p36.21_mRNA Del_WHSC1L1_8q11.21_mRNA Del_WRN_8q11.21_mRNA TCGA-RZ-AB0B 47 1 149 NA stage iv t4b NA m1 2-4-2015 female yes white NA 417.15.0 1 1 1 1 1 1 1 1 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 3.89361e-07 8.34345e-08 10.809518 6.825035 10.463161 9.447417 10.907520 8.679768 12.228911 7.175277 12.304706 1.837984 0.0042085 2.8747000 0.0351000 -0.4686500 -0.0033243 -0.9068400 -0.9068400 -0.8884000 -0.8884000 -0.8884000 -0.8927100 0.0000000 0.0102850 0.0102850 0.1383300 2.9297000 -0.0111980 -0.0119450 -0.3149400 -0.3092100 -0.3192500 0.0351000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.188 -0.315 0.000 0.000 0.000 0.000 0.000 0.000 0.150 0.618 0.000 0.000 0.000 0.000 0.000 0.000 -0.888 -0.888 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.138 0.138 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.188 -0.315 0.000 0.000 0.000 0.000 0.000 0.000 0.150 0.618 0.000 0.000 0.000 0.000 0.000 0.000 -0.888 -0.888 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.138 0.138 0.000 0.000 0.000 0.000 9.860342 10.721927 4.278550 10.083866 8.530465 8.932994 13.488962 13.237634 10.526474 10.777134 11.162798 12.780593 5.674475 11.173045 9.527473 12.064902 13.343573 7.254620 12.183855 13.296088 13.122714 8.902524 4.316023 6.096709 11.821375 10.501278 6.907136 8.165046 9.731926 13.238167 10.426689 10.263640 10.604266 13.012632 4.200544 NA 12.092328 5.731058 10.248577 8.704811 10.777134 6.572103 11.130296 7.024972 7.600475 7.737978 10.148262 3.422933 3.554184 11.573409 4.388169 NA 11.289480 1.837984 7.908548 12.064902 10.233355 13.343573 11.169851 8.744865 12.183855 NA 10.842395 10.060300 9.772086 6.978986 9.951716 4.456885 13.122714 9.892482 8.902524 13.138980 10.474599 11.971496 11.048819 3.674472 12.152476 10.888211 9.107435 11.925248 2.837984 11.534693 11.703707 13.044181 10.915934 8.215495 TCGA-V3-A9ZX 56 0 NA 137 stage iib t2b nx mx 2-4-2015 male yes white not hispanic or latino 417.15.0 1 1 2 1 1 1 1 2 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 2.22492e-07 5.5623e-08 9.532983 10.579187 10.128577 9.384769 10.362124 8.651327 13.186962 6.839462 12.007277 3.219571 0.6307400 2.8095000 -0.0098372 -0.0010241 0.0292750 -0.7844600 -0.7844600 -0.7844600 -0.7844600 -0.7844600 -0.7844600 0.0587950 -0.6741700 -0.6741700 -0.8147400 2.8688000 -0.0158790 -0.0158790 -0.7074700 -0.7074700 -0.7074700 -0.0098372 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.707 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.784 -0.784 0.000 0.000 0.000 0.000 0.631 -0.674 0.000 0.000 0.465 1.280 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.707 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.784 -0.784 0.000 0.000 0.000 0.000 0.631 -0.674 0.000 0.000 0.465 1.280 0.000 0.000 0.000 0.000 9.886156 10.781809 4.804529 10.576601 8.587431 10.928549 13.581123 13.013122 10.709060 11.067637 11.121143 12.770766 6.739434 11.916125 9.073151 12.627084 13.332926 7.996290 12.777762 12.687292 13.177692 9.348849 7.471953 6.866813 11.6219515 11.3838818 8.2285287 8.3941986 9.2393207 15.4266704 10.5103984 10.3007757 10.8744130 12.8465637 5.4540311 1.9394523 12.1417572 4.9394570 10.6765850 9.3500611 11.0676370 6.4657949 9.6556654 7.0269218 7.1764973 8.4562842 8.6179328 5.4719548 3.0389980 11.9530802 7.9490872 NA 11.2248607 2.4540443 8.6814261 12.6270841 10.1384296 13.3329255 10.7259614 8.5457313 12.7777620 -0.8680155 9.8811349 9.9892758 9.5457315 7.6712622 8.7578123 3.5244148 13.1776917 9.5222726 9.3488494 13.8692981 11.2251909 12.1235474 10.8124631 2.7170567 12.3497584 10.9466860 9.1036471 11.9906674 1.7170787 11.6045405 12.2241999 13.5335551 9.6732002 6.7468139 TCGA-V3-A9ZY 54 0 NA 123 stage iib t3a nx mx 2-4-2015 male yes white not hispanic or latino 417.15.0 2 2 3 2 2 2 2 3 0 0 4 4 0 0 0 0 0 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 0 0 3.89361e-07 1.66869e-07 12.2660684 -0.4542293 8.6930290 10.1878759 9.5542527 7.7036261 12.7654464 7.8032122 10.5833711 0.5458696 0.9942600 -0.0058140 0.0126550 -0.0013858 0.0225850 -0.0091286 -0.0091286 -0.0091286 -0.0112660 -0.0112660 -0.0112660 -0.0102060 0.9531800 0.9955100 -0.0058140 -0.0058140 0.0019418 0.0019418 0.0200630 0.0200630 0.0200630 0.0126550 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.953 0.953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.953 0.953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 10.764993 10.345106 2.353182 10.726355 8.957335 9.104245 11.843600 12.266923 9.318963 9.423875 11.347532 12.615945 6.160533 10.839296 7.452715 12.407493 11.588851 9.921950 11.117577 12.157310 9.733176 7.189680 7.595673 5.715748 10.955745 10.890120 5.695571 8.791377 9.656960 14.128907 9.548639 8.656960 8.253183 10.853025 6.145737 NA 11.298623 4.130783 10.835843 9.827754 9.423875 6.315860 8.164210 8.781838 6.204035 4.675105 7.617287 1.867738 4.130783 12.633453 4.005256 NA 11.339834 4.633286 9.238684 12.407493 6.440642 11.588851 9.706956 7.092719 11.117577 NA 9.705695 9.795530 8.898971 6.568192 8.907066 2.353182 9.733176 10.935455 7.189680 15.130699 10.483933 11.665018 10.148523 4.793750 11.786019 10.785423 7.287291 12.417344 3.715751 9.249728 11.938142 13.638277 9.591584 5.452714 TCGA-V4-A9E5 51 0 NA 2267 stage iiib t4b n0 m0 2-4-2015 female yes white not hispanic or latino 417.15.0 2 2 3 2 3 3 2 4 0 0 0 0 4 0 0 0 4 6 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 4 2.503035e-07 8.34345e-08 12.5741812 0.6643008 9.4732522 9.8254199 9.8114930 7.7867022 13.7043209 6.9496902 9.7504243 NA 1.985300 0.955910 0.066780 0.091880 -0.012091 -0.029763 -0.029763 -0.029763 -0.029763 -0.057654 -0.044957 -0.046448 0.909430 0.961650 0.954230 0.954230 0.997790 1.030800 -0.931860 -1.054100 -1.125300 0.066780 0.000 0.000 0.998 0.998 0.000 0.000 0.000 0.000 0.000 -0.139 -1.293 0.000 0.000 0.000 0.000 0.102 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.947 0.947 0.000 0.000 1.985 0.909 0.000 0.000 0.954 0.954 0.000 0.000 0.195 0.195 0.000 0.000 0.998 0.998 0.000 0.000 0.000 0.000 0.000 -0.139 -1.293 0.000 0.000 0.000 0.000 0.102 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.947 0.947 0.000 0.000 1.985 0.909 0.000 0.000 0.954 0.954 0.000 0.000 0.195 0.195 10.8398377 9.8241594 0.6643008 11.0245865 8.9404126 8.1561412 11.5560718 11.4398984 9.4191756 10.3269565 11.1671199 12.8831540 4.9496890 10.1700997 7.9263832 12.0091388 13.7614149 11.7600148 11.6582879 12.8339000 10.7636359 8.3153398 8.2111826 3.8342157 10.6444277 10.7202484 5.2492519 9.7767276 9.2642010 13.6288095 9.5681699 9.2548751 8.8012793 11.4386634 4.5222692 NA 10.9210864 3.4716427 11.7550622 10.2445466 10.3269565 5.9182765 8.9263829 9.5144750 3.6642894 4.6642894 8.4489228 -0.3356992 4.8342106 12.6104633 1.2492633 NA 11.0442079 4.3081424 8.6314277 12.0091388 5.6642894 13.7614149 9.2771565 6.6068020 11.6582879 -0.3356992 9.8858753 11.0923079 8.2227089 7.5097782 9.4533163 1.9862289 10.7636359 10.2679144 8.3153398 14.7531177 10.2388817 11.0134200 9.7819313 2.2492633 10.6699127 10.8172066 7.0479920 13.0649007 2.2492633 10.2360407 11.6702634 13.5488517 9.8203711 5.5950262 TCGA-V4-A9E7 76 1 415 NA stage iiia t4a n0 m0 2-4-2015 male yes white NA 417.15.0 1 1 1 1 2 4 1 5 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 3.33738e-07 1.11246e-07 10.301424 NA 9.368538 9.542066 10.341007 8.282224 13.286725 7.512990 11.460957 NA 0.010954 2.607100 -0.065339 -1.044500 -0.076998 -1.012500 -1.012500 -1.012500 -1.010800 -0.994060 -0.994060 0.031549 -0.898800 -0.971260 -1.046800 2.728600 -0.025509 -0.025509 -0.946530 -0.963660 -1.009200 -0.048775 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.864 0.000 0.000 0.000 0.000 0.000 0.000 -0.999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.994 -0.994 1.077 0.101 0.000 0.000 0.000 -0.899 0.000 0.000 0.143 1.190 0.000 0.000 -0.237 -0.237 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.864 0.000 0.000 0.000 0.000 0.000 0.000 -0.999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.994 -0.994 1.077 0.101 0.000 0.000 0.000 -0.899 0.000 0.000 0.143 1.190 0.000 0.000 -0.237 -0.237 10.998668 10.495259 4.295290 10.273263 8.782276 10.108876 12.790902 12.914786 9.955663 10.713908 11.044905 12.801882 1.572841 12.140209 8.677160 12.756334 12.758318 8.658163 12.216499 12.462023 12.285692 9.470063 5.083784 5.479712 11.4727840 10.1948748 7.5996228 7.7705311 9.4566881 12.3872452 10.0032755 10.2836294 6.3061766 12.8263159 2.4208327 NA 12.0047383 4.9233204 10.6860442 9.2466620 10.7139082 6.6624904 10.2245923 7.3646372 5.6602869 6.7900539 8.0485566 NA 2.7103271 12.2272800 1.8358432 -0.7490384 11.2134294 -0.7490384 7.6307928 12.7563343 9.0822020 12.7583179 10.6356786 7.5082829 12.2164988 -0.7490384 9.4245720 9.6378459 8.2925540 6.3169838 8.2649154 2.8358635 12.2856921 10.8264341 9.4700634 13.4652140 10.1502517 11.5188753 10.8216993 2.7103271 11.5446538 11.0774434 8.1057634 12.2487800 2.4208327 11.1426785 11.5056282 12.6616827 9.3711328 6.0582494 TCGA-V4-A9E8 49 1 808 NA stage iiia t4a n0 m0 2-4-2015 male yes white not hispanic or latino 417.15.0 3 1 1 1 1 3 1 6 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 3.059265e-07 1.390575e-07 8.645282 9.330017 8.173328 9.307684 8.923083 7.789119 13.597753 8.217124 10.605556 NA 0.766960 0.741220 0.602580 -0.108240 0.326900 -0.445010 -0.445010 -0.427340 -0.427340 -0.415970 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4.239100 11.879018 9.552809 10.257428 7.928502 12.122300 7.998839 6.379583 5.507592 7.824064 -0.220278 4.867130 13.065650 4.364635 NA 11.524924 2.587029 7.832564 12.786171 7.587025 14.085091 9.967022 7.728037 12.742385 1.779680 10.052300 10.352465 10.239102 4.686562 9.048797 2.587029 10.347626 11.093120 9.208030 13.382137 9.399890 11.405826 10.015684 3.101600 11.870113 10.905729 6.919221 12.887051 2.101583 9.583801 11.680537 12.705986 10.399890 6.303233 TCGA-VD-A8K7 39 0 NA 3 stage iiia t4a nx mx 2-4-2015 male yes NA NA 417.15.0 2 3 3 2 2 2 2 3 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 1.66869e-07 5.5623e-08 11.835379 2.177886 10.649557 9.825340 10.691609 9.232915 12.687756 6.492577 13.120763 NA 1.7089000 0.0012481 -0.0069195 -0.0047079 0.0048579 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0094491 0.0036517 0.0036517 0.0012481 0.0012481 -0.0033243 -0.0033243 -0.0044312 -0.0044312 -0.0044312 -0.0069195 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 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8.62680743 2.49945049 12.69667311 10.20940328 8.58160697 13.76609812 11.05740025 12.29697561 10.88181181 3.70891557 12.66043234 11.08512472 9.15140653 12.11175054 0.08447252 11.17607620 11.96998974 13.59158990 9.99581251 6.54930722 TCGA-VD-A8K9 71 0 NA 14 stage iia t2a nx mx 2-4-2015 female yes NA NA 417.15.0 2 3 3 2 3 3 3 4 0 0 0 0 4 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 4 2.22492e-07 1.390575e-07 12.0896568 0.9073522 10.7390105 9.7503655 10.4589026 8.9821169 12.9181944 5.5854583 12.2818827 NA 2.34810000 2.33010000 0.00180300 -0.00207840 -0.98681000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 -0.00539920 -0.98273000 -1.01960000 -0.01055700 -0.00705760 -0.00733390 -0.00733390 0.00013863 0.00013863 0.00013863 0.00180300 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.850 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.329 2.329 0.000 0.000 0.000 0.853 0.000 0.000 0.000 0.000 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11.4925370 10.8886684 9.1109794 12.2644987 2.0448837 9.9906000 12.3439940 12.1750160 10.5323648 7.3436814 TCGA-VD-A8KA 22 0 NA 1134 stage iib t3a nx mx 2-4-2015 male yes NA NA 417.15.0 2 3 3 2 3 3 2 4 0 0 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 4 4.171725e-07 2.78115e-08 12.278350 NA 9.247393 10.220239 10.662431 8.454611 12.970541 6.655828 11.661813 NA 1.81580000 1.76270000 0.06562000 -1.03290000 -0.01302300 -0.20252000 -0.20252000 -0.20252000 -0.22537000 -0.22537000 -0.22537000 0.00468430 -0.00709210 -0.00709210 -0.00045044 0.37920000 0.00941430 0.00941430 -0.01398700 -0.01398700 -0.01398700 0.05478600 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.225 -0.225 0.000 0.000 0.000 0.000 0.432 0.000 0.000 0.000 0.000 0.928 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.225 -0.225 0.000 0.000 0.000 0.000 0.432 0.000 0.000 0.000 0.000 0.928 0.000 0.000 0.000 0.000 10.771432 11.061633 3.841842 10.488486 8.070038 9.914167 12.764256 13.007719 10.263769 10.630374 11.013380 12.897647 5.818380 12.178238 8.586348 13.045464 13.380185 11.426560 12.268646 13.149077 12.088081 8.517000 8.992242 5.330587 11.7630089 10.5666837 7.5242682 7.4949740 9.8812896 11.6718693 10.4660162 9.4508397 9.4043284 11.2807658 3.6950027 NA 11.9777559 3.8876422 11.0597584 9.8139396 10.6303740 6.5942425 9.0130569 7.4801003 4.7945354 7.5386949 8.8476453 -1.1124747 2.3470703 12.8683186 -0.1123188 -1.1124747 11.5669037 1.6950139 8.1224610 13.0454641 9.0207858 13.3801852 10.4146316 8.0897672 12.2686456 NA 10.1753558 9.8502792 8.1684144 8.1544298 9.2175632 0.4725917 12.0880808 10.7086202 8.5170000 13.4656623 9.7221145 11.5888785 10.6578944 1.6950139 11.1925652 11.4503629 8.2027928 12.7945341 2.9750982 10.1914242 11.8651023 11.7472501 10.0625691 6.5458557 TCGA-VD-A8KB 66 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4.509652 11.115502 9.219769 8.609788 13.002106 13.125189 10.126568 10.579504 11.560045 13.555821 5.509652 8.259186 8.058088 12.659018 13.206880 11.692543 12.230922 13.199562 11.815253 8.653290 10.056546 6.605576 11.3716691 11.4900769 7.3725987 8.5800411 9.0174462 11.3330189 10.4556807 8.7537777 10.8056501 11.7200795 2.5096452 NA 11.7639717 8.5119040 11.3986993 9.3131370 10.5795042 7.1505038 8.7745634 7.7499659 4.3971800 6.2857555 8.5562301 NA 0.7726458 13.0952715 1.5096452 -0.8122323 11.7377489 3.7112856 9.4604350 12.6590178 8.4638480 13.2068799 9.9641566 7.4591865 12.2309218 -0.8122323 9.9559079 9.0121256 8.4521663 7.7346182 8.4545103 2.8881685 11.8152529 11.0757057 8.6532901 14.8852885 10.6389347 11.7001629 10.7399124 1.7726880 11.0821624 11.0957408 7.9525951 12.8476080 1.5096452 9.3601511 12.3538867 12.6356643 9.8179908 5.5800399 TCGA-VD-A8KD 72 1 114 NA stage iv t4a nx m1 2-4-2015 male yes NA NA 417.15.0 3 1 1 1 2 4 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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8.200871 12.280501 12.868356 8.820950 12.256743 13.032101 11.968885 7.300004 5.802503 6.657556 11.709749 10.166768 6.849468 8.541590 9.491475 17.138252 10.003331 9.422401 10.284897 11.809449 6.972430 NA 11.871441 4.036969 10.464911 8.653151 10.080817 6.069775 10.989129 6.764890 7.689456 6.981829 10.257106 6.669238 5.314954 12.098881 8.322372 NA 11.694110 2.415488 8.662211 12.280501 9.074791 12.868356 10.884340 8.499676 12.256743 NA 12.096585 9.703158 8.588486 7.466586 10.011384 4.737411 11.968885 10.015966 7.300004 13.769137 11.160057 11.702903 11.029908 4.072595 12.797523 11.350987 9.123372 11.965488 2.802503 10.754304 11.404603 13.720673 11.027074 8.202882 TCGA-VD-A8KE 74 0 NA 821 stage iia t2a nx mx 2-4-2015 female yes NA NA 417.15.0 2 3 3 2 3 3 3 4 0 0 4 0 4 4 0 0 0 0 0 4 0 4 0 0 0 0 4 0 4 0 4 0 0 0 5.284185e-07 2.22492e-07 12.2321721 3.9472453 9.1634089 10.1343444 10.8180381 8.0689781 12.9372055 7.5028954 11.3228870 -0.9107731 0.9668900 -0.0026511 0.0373390 -0.0025127 0.0102660 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9.8922430 6.0026665 8.9176054 7.2934367 6.3131733 5.4900502 9.2834667 2.3745666 3.4900566 11.7186846 3.6475908 -1.2102290 11.7240392 2.2490509 9.1608758 12.5040713 9.4717278 11.6684284 11.0873872 8.8624136 10.9698311 0.3746222 10.9406277 9.3782602 8.4830983 9.2252814 9.1126660 1.5969828 12.5084618 10.3258584 7.1115395 13.9586749 11.0648626 12.0072084 11.0175279 2.9595291 12.7644738 11.2949265 9.4743598 11.8649231 4.4334669 10.4891835 12.0820766 13.4298357 10.0905356 7.4513892 TCGA-VD-A8KG 47 0 NA 20 stage iia t2a nx mx 2-4-2015 female yes NA NA 417.15.0 2 3 3 2 3 3 NA NA 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4.44984e-07 1.390575e-07 12.4622685 0.2618317 9.1617411 10.1455422 9.4225925 8.1941939 13.8952922 6.5472832 10.7223366 -1.3230105 3.44340000 1.73140000 0.00265550 0.00000000 0.00597000 -0.01304300 -0.01304300 0.00541390 0.00064062 0.00064062 -0.00470790 -0.00498440 -0.04563500 -0.04563500 -0.01285100 -0.01285100 0.88775000 -1.03220000 -0.00321800 -0.00321800 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10.0626085 2.0380147 12.1808766 11.5117121 7.9132951 13.7839327 10.5501542 11.6980094 11.1051717 4.2706635 12.5149550 10.9625219 8.9699258 12.5081568 4.6468136 10.3818583 11.3493005 11.9194966 10.3626369 7.9687434 TCGA-VD-A8KI 68 0 NA 38 stage iib t3a nx mx 2-4-2015 male yes NA NA 417.15.0 1 1 1 1 1 4 1 6 5 0 0 0 7 0 0 0 0 0 5 0 0 7 0 0 5 0 0 0 7 0 0 0 0 0 5.00607e-07 1.946805e-07 7.580436 10.499299 8.591130 9.255552 9.124756 8.149655 13.172002 7.136486 10.853454 NA 0.8916600 2.4175000 -0.0583270 -0.0056513 0.0263730 -0.9174600 -0.9174600 -0.9174600 -0.9174600 -0.9050200 -0.9297100 0.0321400 -0.9101000 -0.9474900 -0.9671000 2.5190000 -0.0142280 -0.0178320 -0.0496950 -0.0496950 -0.0496950 -0.0583270 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.806 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.905 -0.905 0.000 0.000 0.000 0.000 0.892 -0.013 0.000 0.000 0.044 1.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.806 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.905 -0.905 0.000 0.000 0.000 0.000 0.892 -0.013 0.000 0.000 0.044 1.011 0.000 0.000 0.000 0.000 10.743186 9.788031 1.773068 10.528525 8.485034 10.919437 12.696160 12.343094 9.003501 10.478137 10.950085 12.559214 4.275581 12.652281 8.865838 11.599894 13.326870 6.810169 12.689084 12.239667 11.313205 9.079902 6.995473 4.888558 10.990230 10.943840 5.358045 8.552253 8.661824 14.162398 10.094257 10.157505 9.731150 12.479577 3.831979 NA 11.595386 4.473521 11.409705 9.566413 10.478137 6.235786 9.452561 7.082936 5.118854 8.671934 7.124756 1.510050 2.188116 12.496457 5.491898 NA 11.290750 1.188148 9.130222 11.599894 7.746539 13.326870 9.939662 7.101007 12.689084 NA 8.519035 10.265702 9.303162 7.027322 7.799143 2.647545 11.313205 9.990634 9.079902 13.817418 10.493040 11.581278 10.171824 3.943002 11.444032 10.393300 7.392689 12.485751 2.188116 10.419339 11.724608 14.266497 8.867598 4.860546 TCGA-VD-A8KJ 53 0 NA 961 stage iib t3a nx mx 2-4-2015 male yes NA NA 417.15.0 2 3 3 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.89361e-07 2.78115e-08 11.8572085 -0.2060625 10.1937939 9.6053567 10.3595602 8.7297659 13.4421148 6.3638369 12.5425942 1.7939791 1.7073000 1.3946000 0.0059851 -0.0064213 0.4779700 -0.0713910 -0.0713910 -0.0713910 -0.0713910 -0.0805180 -0.0805180 0.0068237 -1.0638000 -1.0184000 -1.0361000 1.4043000 -0.0080788 -0.0080788 0.0170610 0.0208480 -0.0046172 0.0228100 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.486 0.486 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -1.025 -0.103 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.486 0.486 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -1.025 -0.103 0.000 0.000 0.000 0.000 10.136057 10.542594 4.902508 10.207610 8.027602 9.233813 13.100542 13.200652 10.834272 10.152084 10.907724 12.623011 7.008301 11.753260 8.637903 13.422598 12.654099 10.340394 11.689368 13.430833 12.297677 8.501341 9.090898 6.838376 11.386906 11.061061 7.337013 8.665887 9.240031 12.809571 10.485289 10.136057 10.749995 11.348331 4.748177 -1.205896 11.850112 3.881449 10.657007 9.396681 10.152084 7.148540 7.808003 7.936089 6.060769 5.626871 8.259548 -1.205896 2.700884 12.060915 1.963918 NA 11.384101 2.253414 8.933303 13.422598 8.876131 12.654099 10.419234 8.287837 11.689368 -1.205896 10.007086 9.100944 9.141603 9.220247 9.013150 2.115899 12.297677 10.028201 8.501341 14.479087 11.049306 11.986037 10.778756 3.253414 11.845021 10.637903 9.190587 12.012545 2.494416 10.457095 12.202046 13.654942 8.762649 6.658169 TCGA-VD-A8KK 54 0 NA 64 stage iiia t4a nx mx 2-4-2015 male yes NA NA 417.15.0 3 1 1 3 1 4 1 6 6 0 0 0 4 0 0 0 0 0 6 0 0 4 0 0 6 0 0 0 4 0 0 0 0 0 5.00607e-07 8.34345e-08 8.689503 7.393063 9.287936 8.753045 10.192799 7.946887 12.538214 7.591513 11.321946 NA 0.0137720 1.0015000 -0.0242510 -0.0019399 0.0041632 -0.9575300 -1.0120000 -0.9253300 -0.9165700 -0.9165700 -0.9165700 0.0075000 0.0137720 0.0137720 -0.0136770 -0.0136770 -0.0107840 -0.0109330 -0.0353120 -0.0498980 -0.0498980 -0.0242510 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.000 0.000 0.000 -0.917 -0.917 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.244 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.000 0.000 0.000 -0.917 -0.917 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.244 0.000 0.000 0.000 0.000 11.092990 9.545896 3.953442 9.875875 8.737419 11.274465 12.273111 12.422470 9.064053 9.940987 11.025974 12.753854 3.801438 11.996740 7.791382 11.772660 11.786329 7.902974 11.915757 12.096567 11.117340 9.203264 5.155073 5.216474 11.099626 10.250814 6.935291 9.235137 8.848257 14.493276 9.514154 8.467562 11.923545 12.293512 4.331949 NA 12.037450 4.631512 10.773618 9.425927 9.940987 7.554482 10.631511 8.349187 6.331951 4.916911 8.771062 2.438878 3.090938 12.454878 4.585708 NA 11.299953 1.216486 9.547973 11.772660 5.801435 11.786329 10.021680 6.642738 11.915757 2.953433 10.134343 9.924327 9.025974 5.971362 8.930788 5.023828 11.117340 11.030255 9.203264 14.546223 10.804563 11.705870 10.758861 4.631512 11.635029 10.554095 7.811420 12.587887 3.090938 9.384728 11.731845 14.146178 10.120355 6.216474 TCGA-VD-A8KL 77 0 NA 638 stage iib t3a nx mx 2-4-2015 female yes NA NA 417.15.0 1 1 2 3 1 1 1 2 6 0 0 4 0 0 0 0 0 0 6 0 4 0 0 0 6 0 0 4 0 0 0 0 0 0 5.840415e-07 2.78115e-08 11.326088 6.548805 8.853215 8.992320 9.309209 8.370867 13.311158 7.971595 11.064233 NA 0.6822900 1.3410000 0.6446300 -0.0051712 0.5244400 -0.6893700 -0.6893700 -0.6893700 -0.6893700 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7.2377186 11.5565571 9.5078075 9.8367559 6.2684044 11.4187443 8.3018487 5.0127519 6.6908235 8.6274617 NA 2.2757818 12.7631239 0.6908193 NA 11.3441168 1.6908193 9.1260774 12.4707483 6.0306738 12.2470904 10.3064534 6.9762261 12.0395520 4.2143891 10.2701397 10.1698361 9.2587799 4.5977159 9.4607278 4.1502591 10.7208011 11.0874286 8.0874284 14.7645888 10.4482138 11.6495433 10.8239660 3.3912591 11.5780444 10.8155914 7.4050691 13.1063015 2.0127474 10.0702021 11.9021038 13.8826958 11.0954332 6.7020508 TCGA-VD-A8KM 65 0 NA 4 stage iib t3a nx mx 2-4-2015 male yes NA NA 417.15.0 1 1 1 1 1 4 1 5 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 3.615495e-07 1.946805e-07 9.075319 11.258069 9.891719 8.768685 10.122430 8.412355 12.541973 7.108211 12.106116 NA 0.4709100 1.3588000 -0.0083774 -0.0169790 0.0032525 -0.4767400 -0.4767400 -0.4767400 -0.4767400 -0.4726400 -0.4726400 0.0032525 0.0047805 0.0047805 -0.4921000 0.4740000 -0.0043700 -0.0036782 -0.4831900 -0.4831900 -0.5124500 -0.0083774 0.000 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