This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 20 focal events and 8 molecular subtypes across 80 patients, 97 significant findings detected with P value < 0.05 and Q value < 0.25.
-
amp_6p24.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_8q24.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_17q25.3 cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
-
del_1p36.21 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
del_3p25.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_3p25.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_3p22.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_3p14.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3q24 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_3q29 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q22.31 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_6q27 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p11.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_11q24.3 cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
-
del_16q12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_16q23.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q24.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 6p24 3 | 45 (56%) | 35 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
0.00013 (0.000315) |
1e-05 (2.86e-05) |
amp 8q24 22 | 61 (76%) | 19 |
4e-05 (0.000107) |
0.00016 (0.000382) |
0.00422 (0.00855) |
0.00066 (0.00147) |
0.0027 (0.00561) |
0.00082 (0.0018) |
0.0001 (0.000246) |
0.0006 (0.00135) |
del 3p25 2 | 43 (54%) | 37 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
del 3p25 1 | 43 (54%) | 37 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
del 3p22 2 | 43 (54%) | 37 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
del 3p14 2 | 44 (55%) | 36 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
del 3q24 | 44 (55%) | 36 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
del 3q29 | 44 (55%) | 36 |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
1e-05 (2.86e-05) |
del 8p11 22 | 19 (24%) | 61 |
1e-05 (2.86e-05) |
5e-05 (0.000129) |
2e-05 (5.42e-05) |
2e-05 (5.42e-05) |
6e-05 (0.000152) |
2e-05 (5.42e-05) |
5e-05 (0.000129) |
8e-05 (2e-04) |
del 16q24 3 | 17 (21%) | 63 |
0.001 (0.00216) |
0.0156 (0.0284) |
0.0494 (0.0816) |
0.0049 (0.00968) |
0.353 (0.401) |
0.0375 (0.0631) |
0.081 (0.119) |
0.00682 (0.013) |
del 6q27 | 24 (30%) | 56 |
0.00123 (0.00259) |
0.0291 (0.0507) |
0.111 (0.157) |
0.00509 (0.00993) |
0.175 (0.226) |
0.749 (0.778) |
0.0517 (0.0836) |
0.00395 (0.0081) |
del 6q22 31 | 24 (30%) | 56 |
0.00034 (8e-04) |
0.064 (0.1) |
0.181 (0.229) |
0.0149 (0.0275) |
0.323 (0.374) |
0.934 (0.946) |
0.173 (0.225) |
0.00123 (0.00259) |
del 16q12 1 | 16 (20%) | 64 |
0.0218 (0.0388) |
0.133 (0.181) |
0.0953 (0.137) |
0.0127 (0.0236) |
0.824 (0.845) |
0.126 (0.174) |
0.143 (0.192) |
0.0471 (0.0785) |
del 16q23 3 | 17 (21%) | 63 |
0.00826 (0.0155) |
0.0797 (0.119) |
0.0506 (0.0826) |
0.00486 (0.00968) |
0.724 (0.757) |
0.0962 (0.137) |
0.081 (0.119) |
0.0296 (0.051) |
amp 17q25 3 | 14 (18%) | 66 |
0.205 (0.258) |
0.0749 (0.113) |
0.143 (0.192) |
0.114 (0.158) |
0.00634 (0.0122) |
0.00041 (0.000951) |
0.262 (0.317) |
0.328 (0.378) |
del 1p36 21 | 24 (30%) | 56 |
0.00051 (0.00117) |
0.0254 (0.0447) |
0.429 (0.48) |
0.166 (0.219) |
0.518 (0.56) |
0.467 (0.512) |
0.302 (0.355) |
0.489 (0.532) |
del 11q24 3 | 7 (9%) | 73 |
0.0669 (0.104) |
0.0187 (0.0336) |
0.0679 (0.104) |
0.0732 (0.111) |
0.0309 (0.0525) |
0.149 (0.199) |
1 (1.00) |
0.523 (0.561) |
del 2q37 2 | 3 (4%) | 77 |
0.249 (0.305) |
0.0535 (0.0856) |
0.298 (0.355) |
0.237 (0.294) |
0.312 (0.365) |
0.44 (0.488) |
0.302 (0.355) |
0.689 (0.725) |
del 5q23 1 | 4 (5%) | 76 |
0.378 (0.426) |
0.114 (0.158) |
0.177 (0.227) |
0.208 (0.26) |
0.34 (0.389) |
0.755 (0.779) |
0.301 (0.355) |
0.895 (0.912) |
del 17q12 | 3 (4%) | 77 |
0.245 (0.302) |
0.0545 (0.0864) |
0.0886 (0.129) |
0.169 (0.222) |
0.599 (0.635) |
0.443 (0.489) |
0.593 (0.633) |
0.941 (0.947) |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
AMP PEAK 1(6P24.3) MUTATED | 9 | 32 | 4 |
AMP PEAK 1(6P24.3) WILD-TYPE | 13 | 4 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
AMP PEAK 1(6P24.3) MUTATED | 10 | 8 | 27 |
AMP PEAK 1(6P24.3) WILD-TYPE | 23 | 10 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
AMP PEAK 1(6P24.3) MUTATED | 8 | 6 | 31 |
AMP PEAK 1(6P24.3) WILD-TYPE | 22 | 9 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
AMP PEAK 1(6P24.3) MUTATED | 9 | 30 | 6 |
AMP PEAK 1(6P24.3) WILD-TYPE | 20 | 3 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
AMP PEAK 1(6P24.3) MUTATED | 12 | 5 | 28 |
AMP PEAK 1(6P24.3) WILD-TYPE | 22 | 12 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
AMP PEAK 1(6P24.3) MUTATED | 4 | 9 | 27 | 5 |
AMP PEAK 1(6P24.3) WILD-TYPE | 13 | 4 | 1 | 17 |
P value = 0.00013 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
AMP PEAK 1(6P24.3) MUTATED | 12 | 24 | 5 |
AMP PEAK 1(6P24.3) WILD-TYPE | 20 | 4 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
AMP PEAK 1(6P24.3) MUTATED | 1 | 6 | 12 | 15 | 1 | 6 |
AMP PEAK 1(6P24.3) WILD-TYPE | 4 | 6 | 4 | 1 | 14 | 4 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
AMP PEAK 2(8Q24.22) MUTATED | 22 | 19 | 20 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 0 | 17 | 2 |
P value = 0.00016 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
AMP PEAK 2(8Q24.22) MUTATED | 32 | 13 | 16 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 1 | 5 | 13 |
P value = 0.00422 (Fisher's exact test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
AMP PEAK 2(8Q24.22) MUTATED | 28 | 12 | 21 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 2 | 3 | 14 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
AMP PEAK 2(8Q24.22) MUTATED | 28 | 19 | 14 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 1 | 14 | 4 |
P value = 0.0027 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
AMP PEAK 2(8Q24.22) MUTATED | 32 | 10 | 19 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 2 | 7 | 10 |
P value = 0.00082 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
AMP PEAK 2(8Q24.22) MUTATED | 16 | 6 | 18 | 21 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 1 | 7 | 10 | 1 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
AMP PEAK 2(8Q24.22) MUTATED | 31 | 15 | 12 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 1 | 13 | 2 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
AMP PEAK 2(8Q24.22) MUTATED | 5 | 11 | 6 | 12 | 14 | 10 |
AMP PEAK 2(8Q24.22) WILD-TYPE | 0 | 1 | 10 | 4 | 1 | 0 |
P value = 0.00634 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
AMP PEAK 3(17Q25.3) MUTATED | 4 | 0 | 10 |
AMP PEAK 3(17Q25.3) WILD-TYPE | 30 | 17 | 19 |
P value = 0.00041 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
AMP PEAK 3(17Q25.3) MUTATED | 3 | 0 | 11 | 0 |
AMP PEAK 3(17Q25.3) WILD-TYPE | 14 | 13 | 17 | 22 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 1(1P36.21) MUTATED | 4 | 6 | 14 |
DEL PEAK 1(1P36.21) WILD-TYPE | 18 | 30 | 8 |
P value = 0.0254 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 1(1P36.21) MUTATED | 11 | 9 | 4 |
DEL PEAK 1(1P36.21) WILD-TYPE | 22 | 9 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 3(3P25.2) MUTATED | 22 | 2 | 19 |
DEL PEAK 3(3P25.2) WILD-TYPE | 0 | 34 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 3(3P25.2) MUTATED | 33 | 9 | 1 |
DEL PEAK 3(3P25.2) WILD-TYPE | 0 | 9 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 3(3P25.2) MUTATED | 30 | 10 | 3 |
DEL PEAK 3(3P25.2) WILD-TYPE | 0 | 5 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 3(3P25.2) MUTATED | 29 | 2 | 12 |
DEL PEAK 3(3P25.2) WILD-TYPE | 0 | 31 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 3(3P25.2) MUTATED | 29 | 12 | 2 |
DEL PEAK 3(3P25.2) WILD-TYPE | 5 | 5 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 3(3P25.2) MUTATED | 17 | 1 | 3 | 22 |
DEL PEAK 3(3P25.2) WILD-TYPE | 0 | 12 | 25 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 3(3P25.2) MUTATED | 29 | 4 | 9 |
DEL PEAK 3(3P25.2) WILD-TYPE | 3 | 24 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 3(3P25.2) MUTATED | 5 | 7 | 4 | 1 | 15 | 10 |
DEL PEAK 3(3P25.2) WILD-TYPE | 0 | 5 | 12 | 15 | 0 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 4(3P25.1) MUTATED | 22 | 2 | 19 |
DEL PEAK 4(3P25.1) WILD-TYPE | 0 | 34 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 4(3P25.1) MUTATED | 33 | 9 | 1 |
DEL PEAK 4(3P25.1) WILD-TYPE | 0 | 9 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 4(3P25.1) MUTATED | 30 | 10 | 3 |
DEL PEAK 4(3P25.1) WILD-TYPE | 0 | 5 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 4(3P25.1) MUTATED | 29 | 2 | 12 |
DEL PEAK 4(3P25.1) WILD-TYPE | 0 | 31 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 4(3P25.1) MUTATED | 29 | 12 | 2 |
DEL PEAK 4(3P25.1) WILD-TYPE | 5 | 5 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 4(3P25.1) MUTATED | 17 | 1 | 3 | 22 |
DEL PEAK 4(3P25.1) WILD-TYPE | 0 | 12 | 25 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 4(3P25.1) MUTATED | 29 | 4 | 9 |
DEL PEAK 4(3P25.1) WILD-TYPE | 3 | 24 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 4(3P25.1) MUTATED | 5 | 7 | 4 | 1 | 15 | 10 |
DEL PEAK 4(3P25.1) WILD-TYPE | 0 | 5 | 12 | 15 | 0 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 5(3P22.2) MUTATED | 22 | 2 | 19 |
DEL PEAK 5(3P22.2) WILD-TYPE | 0 | 34 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 5(3P22.2) MUTATED | 33 | 9 | 1 |
DEL PEAK 5(3P22.2) WILD-TYPE | 0 | 9 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 5(3P22.2) MUTATED | 30 | 10 | 3 |
DEL PEAK 5(3P22.2) WILD-TYPE | 0 | 5 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 5(3P22.2) MUTATED | 29 | 2 | 12 |
DEL PEAK 5(3P22.2) WILD-TYPE | 0 | 31 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 5(3P22.2) MUTATED | 29 | 12 | 2 |
DEL PEAK 5(3P22.2) WILD-TYPE | 5 | 5 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 5(3P22.2) MUTATED | 17 | 1 | 3 | 22 |
DEL PEAK 5(3P22.2) WILD-TYPE | 0 | 12 | 25 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 5(3P22.2) MUTATED | 29 | 4 | 9 |
DEL PEAK 5(3P22.2) WILD-TYPE | 3 | 24 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 5(3P22.2) MUTATED | 5 | 7 | 4 | 1 | 15 | 10 |
DEL PEAK 5(3P22.2) WILD-TYPE | 0 | 5 | 12 | 15 | 0 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 6(3P14.2) MUTATED | 22 | 2 | 20 |
DEL PEAK 6(3P14.2) WILD-TYPE | 0 | 34 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 6(3P14.2) MUTATED | 33 | 10 | 1 |
DEL PEAK 6(3P14.2) WILD-TYPE | 0 | 8 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 6(3P14.2) MUTATED | 30 | 10 | 4 |
DEL PEAK 6(3P14.2) WILD-TYPE | 0 | 5 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 6(3P14.2) MUTATED | 29 | 2 | 13 |
DEL PEAK 6(3P14.2) WILD-TYPE | 0 | 31 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 6(3P14.2) MUTATED | 30 | 12 | 2 |
DEL PEAK 6(3P14.2) WILD-TYPE | 4 | 5 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 6(3P14.2) MUTATED | 17 | 2 | 3 | 22 |
DEL PEAK 6(3P14.2) WILD-TYPE | 0 | 11 | 25 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 6(3P14.2) MUTATED | 30 | 4 | 9 |
DEL PEAK 6(3P14.2) WILD-TYPE | 2 | 24 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 6(3P14.2) MUTATED | 5 | 8 | 4 | 1 | 15 | 10 |
DEL PEAK 6(3P14.2) WILD-TYPE | 0 | 4 | 12 | 15 | 0 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 7(3Q24) MUTATED | 22 | 2 | 20 |
DEL PEAK 7(3Q24) WILD-TYPE | 0 | 34 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 7(3Q24) MUTATED | 33 | 10 | 1 |
DEL PEAK 7(3Q24) WILD-TYPE | 0 | 8 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 7(3Q24) MUTATED | 30 | 10 | 4 |
DEL PEAK 7(3Q24) WILD-TYPE | 0 | 5 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 7(3Q24) MUTATED | 29 | 2 | 13 |
DEL PEAK 7(3Q24) WILD-TYPE | 0 | 31 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 7(3Q24) MUTATED | 30 | 12 | 2 |
DEL PEAK 7(3Q24) WILD-TYPE | 4 | 5 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 7(3Q24) MUTATED | 17 | 2 | 3 | 22 |
DEL PEAK 7(3Q24) WILD-TYPE | 0 | 11 | 25 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 7(3Q24) MUTATED | 30 | 4 | 9 |
DEL PEAK 7(3Q24) WILD-TYPE | 2 | 24 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 7(3Q24) MUTATED | 5 | 8 | 4 | 1 | 15 | 10 |
DEL PEAK 7(3Q24) WILD-TYPE | 0 | 4 | 12 | 15 | 0 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 8(3Q29) MUTATED | 22 | 2 | 20 |
DEL PEAK 8(3Q29) WILD-TYPE | 0 | 34 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 8(3Q29) MUTATED | 33 | 10 | 1 |
DEL PEAK 8(3Q29) WILD-TYPE | 0 | 8 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 8(3Q29) MUTATED | 30 | 10 | 4 |
DEL PEAK 8(3Q29) WILD-TYPE | 0 | 5 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 8(3Q29) MUTATED | 29 | 2 | 13 |
DEL PEAK 8(3Q29) WILD-TYPE | 0 | 31 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 8(3Q29) MUTATED | 30 | 12 | 2 |
DEL PEAK 8(3Q29) WILD-TYPE | 4 | 5 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 8(3Q29) MUTATED | 17 | 2 | 3 | 22 |
DEL PEAK 8(3Q29) WILD-TYPE | 0 | 11 | 25 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 8(3Q29) MUTATED | 30 | 4 | 9 |
DEL PEAK 8(3Q29) WILD-TYPE | 2 | 24 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 8(3Q29) MUTATED | 5 | 8 | 4 | 1 | 15 | 10 |
DEL PEAK 8(3Q29) WILD-TYPE | 0 | 4 | 12 | 15 | 0 | 0 |
P value = 0.00034 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 10(6Q22.31) MUTATED | 13 | 10 | 1 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 9 | 26 | 21 |
P value = 0.0149 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 10(6Q22.31) MUTATED | 13 | 10 | 1 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 16 | 23 | 17 |
P value = 0.00123 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 10(6Q22.31) MUTATED | 3 | 2 | 2 | 7 | 2 | 8 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 2 | 10 | 14 | 9 | 13 | 2 |
P value = 0.00123 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 11(6Q27) MUTATED | 13 | 9 | 2 |
DEL PEAK 11(6Q27) WILD-TYPE | 9 | 27 | 20 |
P value = 0.0291 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 11(6Q27) MUTATED | 15 | 2 | 7 |
DEL PEAK 11(6Q27) WILD-TYPE | 18 | 16 | 22 |
P value = 0.00509 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 11(6Q27) MUTATED | 14 | 9 | 1 |
DEL PEAK 11(6Q27) WILD-TYPE | 15 | 24 | 17 |
P value = 0.00395 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 11(6Q27) MUTATED | 3 | 2 | 2 | 6 | 3 | 8 |
DEL PEAK 11(6Q27) WILD-TYPE | 2 | 10 | 14 | 10 | 12 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 12(8P11.22) MUTATED | 16 | 1 | 2 |
DEL PEAK 12(8P11.22) WILD-TYPE | 6 | 35 | 20 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 12(8P11.22) MUTATED | 16 | 2 | 1 |
DEL PEAK 12(8P11.22) WILD-TYPE | 17 | 16 | 28 |
P value = 2e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 12(8P11.22) MUTATED | 15 | 3 | 1 |
DEL PEAK 12(8P11.22) WILD-TYPE | 15 | 12 | 34 |
P value = 2e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 12(8P11.22) MUTATED | 16 | 1 | 2 |
DEL PEAK 12(8P11.22) WILD-TYPE | 13 | 32 | 16 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 12(8P11.22) MUTATED | 15 | 4 | 0 |
DEL PEAK 12(8P11.22) WILD-TYPE | 19 | 13 | 29 |
P value = 2e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 12(8P11.22) MUTATED | 7 | 1 | 0 | 11 |
DEL PEAK 12(8P11.22) WILD-TYPE | 10 | 12 | 28 | 11 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 32 | 28 | 14 |
DEL PEAK 12(8P11.22) MUTATED | 16 | 0 | 3 |
DEL PEAK 12(8P11.22) WILD-TYPE | 16 | 28 | 11 |
P value = 8e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 12(8P11.22) MUTATED | 3 | 4 | 0 | 0 | 7 | 5 |
DEL PEAK 12(8P11.22) WILD-TYPE | 2 | 8 | 16 | 16 | 8 | 5 |
P value = 0.0187 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 15(11Q24.3) MUTATED | 1 | 0 | 6 |
DEL PEAK 15(11Q24.3) WILD-TYPE | 32 | 18 | 23 |
P value = 0.0309 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 17 | 29 |
DEL PEAK 15(11Q24.3) MUTATED | 1 | 0 | 6 |
DEL PEAK 15(11Q24.3) WILD-TYPE | 33 | 17 | 23 |
P value = 0.0218 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 16(16Q12.1) MUTATED | 9 | 5 | 2 |
DEL PEAK 16(16Q12.1) WILD-TYPE | 13 | 31 | 20 |
P value = 0.0127 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 16(16Q12.1) MUTATED | 11 | 4 | 1 |
DEL PEAK 16(16Q12.1) WILD-TYPE | 18 | 29 | 17 |
P value = 0.0471 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 16(16Q12.1) MUTATED | 3 | 2 | 0 | 4 | 4 | 3 |
DEL PEAK 16(16Q12.1) WILD-TYPE | 2 | 10 | 16 | 12 | 11 | 7 |
P value = 0.00826 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 17(16Q23.3) MUTATED | 10 | 5 | 2 |
DEL PEAK 17(16Q23.3) WILD-TYPE | 12 | 31 | 20 |
P value = 0.00486 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 17(16Q23.3) MUTATED | 12 | 4 | 1 |
DEL PEAK 17(16Q23.3) WILD-TYPE | 17 | 29 | 17 |
P value = 0.0296 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 17(16Q23.3) MUTATED | 3 | 2 | 0 | 4 | 4 | 4 |
DEL PEAK 17(16Q23.3) WILD-TYPE | 2 | 10 | 16 | 12 | 11 | 6 |
P value = 0.001 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 36 | 22 |
DEL PEAK 18(16Q24.3) MUTATED | 11 | 4 | 2 |
DEL PEAK 18(16Q24.3) WILD-TYPE | 11 | 32 | 20 |
P value = 0.0156 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 18 | 29 |
DEL PEAK 18(16Q24.3) MUTATED | 12 | 3 | 2 |
DEL PEAK 18(16Q24.3) WILD-TYPE | 21 | 15 | 27 |
P value = 0.0494 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 15 | 35 |
DEL PEAK 18(16Q24.3) MUTATED | 11 | 2 | 4 |
DEL PEAK 18(16Q24.3) WILD-TYPE | 19 | 13 | 31 |
P value = 0.0049 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 33 | 18 |
DEL PEAK 18(16Q24.3) MUTATED | 12 | 4 | 1 |
DEL PEAK 18(16Q24.3) WILD-TYPE | 17 | 29 | 17 |
P value = 0.0375 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 13 | 28 | 22 |
DEL PEAK 18(16Q24.3) MUTATED | 6 | 0 | 4 | 7 |
DEL PEAK 18(16Q24.3) WILD-TYPE | 11 | 13 | 24 | 15 |
P value = 0.00682 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 5 | 12 | 16 | 16 | 15 | 10 |
DEL PEAK 18(16Q24.3) MUTATED | 3 | 1 | 0 | 4 | 4 | 5 |
DEL PEAK 18(16Q24.3) WILD-TYPE | 2 | 11 | 16 | 12 | 11 | 5 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UVM-TP/15908354/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UVM-TP/15952300/UVM-TP.transferedmergedcluster.txt
-
Number of patients = 80
-
Number of significantly focal cnvs = 20
-
Number of molecular subtypes = 8
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.