Broad GDAC Analyses Status
analyses__2015_08_21__laml Run for Tumor Type: LAML
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
LAML
200
200
197
0
194
0
179
0
188
0
197
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
TB-Aggregate_AnalysisFeatures
0
0
0
1
0
2
TB-Aggregate_Gene_Status
0
0
0
1
0
3
TB-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
4
TB-Append_CustomClinical
0
0
0
1
0
5
TB-CoMut2.0
1
0
0
0
0
6
TB-CoMut2CV
0
0
0
1
0
7
TB-CoMutCV
0
0
0
1
0
8
TB-CopyNumber_Clustering_CNMF
0
0
0
1
0
9
TB-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
10
TB-CopyNumber_Gistic2
0
0
0
1
0
11
TB-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
12
TB-CopyNumberLowPass_Gistic2
1
0
0
0
0
13
TB-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
14
TB-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
15
TB-Correlate_Clinical_vs_Methylation
0
0
0
1
0
16
TB-Correlate_Clinical_vs_miR
1
0
0
0
0
17
TB-Correlate_Clinical_vs_miRseq
0
0
0
1
0
18
TB-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
19
TB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
TB-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
21
TB-Correlate_Clinical_vs_Mutation
0
0
0
1
0
22
TB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
TB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
TB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
TB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
TB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
TB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
TB-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
29
TB-Correlate_Methylation_vs_mRNA
0
0
0
1
0
30
TB-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
31
TB-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
32
TB-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
33
TB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
TB-GenerateStickFigures2.0
1
0
0
0
0
35
TB-GenerateStickFigures2CV
0
0
0
1
0
36
TB-GenerateStickFiguresCV
0
0
0
1
0
37
TB-LegoPlotter2.0
1
0
0
0
0
38
TB-LegoPlotter2CV
0
0
0
1
0
39
TB-LegoPlotterCV
0
0
0
1
0
40
TB-Methylation_Clustering_CNMF
0
0
0
1
0
41
TB-miR_Clustering_CNMF
1
0
0
0
0
42
TB-miR_Clustering_Consensus_Plus
1
0
0
0
0
43
TB-miR_FindDirectTargets
1
0
0
0
0
44
TB-miRseq_Clustering_CNMF
0
0
0
1
0
45
TB-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
46
TB-miRseq_FindDirectTargets
1
0
0
0
0
47
TB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
48
TB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
49
TB-mRNA_Clustering_CNMF
1
0
0
0
0
50
TB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
51
TB-mRNAseq_Clustering_CNMF
0
0
0
1
0
52
TB-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
53
TB-Mutation_APOBEC
0
0
0
1
0
54
TB-Mutation_Assessor
0
0
0
1
0
55
TB-Mutation_CHASM
0
0
0
1
0
56
TB-Mutation_CoOccurrence
0
0
0
1
0
57
TB-Mutation_CoOccurrence_Custom
1
0
0
0
0
58
TB-MutSigNozzleReport2.0
1
0
0
0
0
59
TB-MutSigNozzleReport2CV
0
0
0
1
0
60
TB-MutSigNozzleReportCV
0
0
0
1
0
61
TB-MutSigPreprocess2.0
0
0
0
1
0
62
TB-MutSigRun2.0
1
0
0
0
0
63
TB-MutSigRun2CV
0
0
0
1
0
64
TB-MutSigRunCV
0
0
0
1
0
65
TB-Paradigm_mRNA
1
0
0
0
0
66
TB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
67
TB-Paradigm_Prepare_mRNA
1
0
0
0
0
68
TB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
69
TB-Paradigm_Prepare_RNASeq
0
0
0
1
0
70
TB-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
71
TB-Paradigm_Preprocess_mRNA
1
0
0
0
0
72
TB-ParadigmPreprocess_mRNA
1
0
0
0
0
73
TB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
74
TB-Paradigm_Preprocess_RNASeq
0
0
0
1
0
75
TB-ParadigmPreprocess_RNASeq
0
0
0
1
0
76
TB-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
77
TB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
78
TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
79
TB-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
80
TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
81
TB-Paradigm_RNASeq
0
0
0
1
0
82
TB-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
83
TB-Pathway_FindEnrichedGenes
1
0
0
0
0
84
TB-Pathway_GSEA_mRNAseq
0
0
0
1
0
85
TB-Pathway_Hotnet
0
0
0
0
1
86
TB-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
87
TB-Pathway_Paradigm_mRNA
1
0
0
0
0
88
TB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
89
TB-Pathway_Paradigm_RNASeq
0
0
0
1
0
90
TB-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
91
TB-ProcessCoverageForMutSig2.0
0
0
0
0
1
92
TB-RPPA_Clustering_CNMF
1
0
0
0
0
93
TB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
38
0
0
53
2
This table generated on Fri Nov 20 19:47:31 2015