Broad GDAC analyses__2015_08_21__skcm Run Status : SKCM

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
SKCM	470	470	469	118	470	0	468	0	448	204	343	366

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful	Unsuccessful
1	TM-Aggregate_AnalysisFeatures	0	1	0
2	TM-Aggregate_Gene_Status	0	1	0
3	TM-Aggregate_Molecular_Subtype_Clusters	0	1	0
4	TM-Append_CustomClinical	0	1	0
5	TM-CoMut2.0	0	1	0
6	TM-CoMut2CV	0	1	0
7	TM-CoMutCV	0	1	0
8	TM-CopyNumber_Clustering_CNMF	0	1	0
9	TM-CopyNumber_Clustering_CNMF_thresholded	0	1	0
10	TM-CopyNumber_Gistic2	0	1	0
11	TM-CopyNumber_Gistic2_Postprocess_Focal	0	1	0
12	TM-CopyNumberLowPass_Gistic2	0	1	0
13	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	1	0
14	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	1	0
15	TM-Correlate_Clinical_vs_Methylation	0	1	0
16	TM-Correlate_Clinical_vs_miR	1	0	0
17	TM-Correlate_Clinical_vs_miRseq	0	1	0
18	TM-Correlate_Clinical_vs_Molecular_Subtypes	0	1	0
19	TM-Correlate_Clinical_vs_mRNA	1	0	0
20	TM-Correlate_Clinical_vs_mRNAseq	0	1	0
21	TM-Correlate_Clinical_vs_Mutation	0	1	0
22	TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	0	1	0
23	TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	0	1	0
24	TM-Correlate_Clinical_vs_MutationRate	0	1	0
25	TM-Correlate_Clinical_vs_RPPA	0	1	0
26	TM-Correlate_CopyNumber_vs_miR	1	0	0
27	TM-Correlate_CopyNumber_vs_mRNA	1	0	0
28	TM-Correlate_CopyNumber_vs_mRNAseq	0	1	0
29	TM-Correlate_Methylation_vs_mRNA	0	1	0
30	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1	0
31	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1	0
32	TM-Correlate_molecularSubtype_vs_Mutation	0	1	0
33	TM-Correlate_mRNAseq_vs_Mutation_APOBEC	0	1	0
34	TM-GenerateStickFigures2.0	0	1	0
35	TM-GenerateStickFigures2CV	0	1	0
36	TM-GenerateStickFiguresCV	0	1	0
37	TM-LegoPlotter2.0	0	1	0
38	TM-LegoPlotter2CV	0	1	0
39	TM-LegoPlotterCV	0	1	0
40	TM-Methylation_Clustering_CNMF	0	1	0
41	TM-miR_Clustering_CNMF	1	0	0
42	TM-miR_Clustering_Consensus_Plus	1	0	0
43	TM-miR_FindDirectTargets	1	0	0
44	TM-miRseq_Clustering_CNMF	0	1	0
45	TM-miRseq_Clustering_Consensus_Plus	0	1	0
46	TM-miRseq_FindDirectTargets	0	1	0
47	TM-miRseq_Mature_Clustering_CNMF	0	1	0
48	TM-miRseq_Mature_Clustering_Consensus_Plus	0	1	0
49	TM-mRNA_Clustering_CNMF	1	0	0
50	TM-mRNA_Clustering_Consensus_Plus	1	0	0
51	TM-mRNAseq_Clustering_CNMF	0	1	0
52	TM-mRNAseq_Clustering_Consensus_Plus	0	1	0
53	TM-Mutation_APOBEC	0	1	0
54	TM-Mutation_Assessor	0	1	0
55	TM-Mutation_CHASM	0	0	1
56	TM-Mutation_CoOccurrence	0	1	0
57	TM-Mutation_CoOccurrence_Custom	1	0	0
58	TM-MutSigNozzleReport2.0	0	1	0
59	TM-MutSigNozzleReport2CV	0	1	0
60	TM-MutSigNozzleReportCV	0	1	0
61	TM-MutSigPreprocess2.0	0	1	0
62	TM-MutSigRun2.0	0	1	0
63	TM-MutSigRun2CV	0	1	0
64	TM-MutSigRunCV	0	1	0
65	TM-Paradigm_mRNA	1	0	0
66	TM-Paradigm_mRNA_And_CopyNumber	1	0	0
67	TM-Paradigm_Prepare_mRNA	1	0	0
68	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0
69	TM-Paradigm_Prepare_RNASeq	0	1	0
70	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1	0
71	TM-Paradigm_Preprocess_mRNA	1	0	0
72	TM-ParadigmPreprocess_mRNA	1	0	0
73	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0
74	TM-Paradigm_Preprocess_RNASeq	0	1	0
75	TM-ParadigmPreprocess_RNASeq	0	1	0
76	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1	0
77	TM-Paradigm_Report_Preprocess_mRNA	1	0	0
78	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0
79	TM-Paradigm_Report_Preprocess_RNASeq	0	1	0
80	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1	0
81	TM-Paradigm_RNASeq	0	1	0
82	TM-Paradigm_RNASeq_And_Copy_Number	0	1	0
83	TM-Pathway_FindEnrichedGenes	1	0	0
84	TM-Pathway_GSEA_mRNAseq	0	1	0
85	TM-Pathway_Hotnet	0	0	1
86	TM-Pathway_Overlaps_MSigDB_MutSig2CV	0	1	0
87	TM-Pathway_Paradigm_mRNA	1	0	0
88	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0
89	TM-Pathway_Paradigm_RNASeq	0	1	0
90	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1	0
91	TM-ProcessCoverageForMutSig2.0	0	1	0
92	TM-RPPA_Clustering_CNMF	0	1	0
93	TM-RPPA_Clustering_Consensus_Plus	0	1	0
	Total	22	69	2

This table generated on Fri Nov 20 19:47:37 2015

Broad GDAC Analyses Status analyses__2015_08_21__skcm Run for Tumor Type: SKCM

Broad GDAC Analyses Status
analyses__2015_08_21__skcm Run for Tumor Type: SKCM