Broad GDAC analyses__2015_08_21_

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
UCS	57	57	56	0	57	0	57	0	56	48	57	0

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful	Unsuccessful
1	TP-Aggregate_AnalysisFeatures	0	1	0
2	TP-Aggregate_Gene_Status	0	1	0
3	TP-Aggregate_Molecular_Subtype_Clusters	0	1	0
4	TP-Append_CustomClinical	0	1	0
5	TP-CoMut2.0	0	1	0
6	TP-CoMut2CV	0	1	0
7	TP-CoMutCV	0	1	0
8	TP-CopyNumber_Clustering_CNMF	0	1	0
9	TP-CopyNumber_Clustering_CNMF_thresholded	0	1	0
10	TP-CopyNumber_Gistic2	0	1	0
11	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1	0
12	TP-CopyNumberLowPass_Gistic2	1	0	0
13	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1	0
14	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1	0
15	TP-Correlate_Clinical_vs_Methylation	0	1	0
16	TP-Correlate_Clinical_vs_miR	1	0	0
17	TP-Correlate_Clinical_vs_miRseq	0	1	0
18	TP-Correlate_Clinical_vs_Molecular_Subtypes	0	1	0
19	TP-Correlate_Clinical_vs_mRNA	1	0	0
20	TP-Correlate_Clinical_vs_mRNAseq	0	1	0
21	TP-Correlate_Clinical_vs_Mutation	0	1	0
22	TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0
23	TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0
24	TP-Correlate_Clinical_vs_MutationRate	0	1	0
25	TP-Correlate_Clinical_vs_RPPA	0	1	0
26	TP-Correlate_CopyNumber_vs_miR	1	0	0
27	TP-Correlate_CopyNumber_vs_mRNA	1	0	0
28	TP-Correlate_CopyNumber_vs_mRNAseq	0	1	0
29	TP-Correlate_Methylation_vs_mRNA	0	1	0
30	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1	0
31	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1	0
32	TP-Correlate_molecularSubtype_vs_Mutation	0	1	0
33	TP-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0
34	TP-GenerateStickFigures2.0	0	1	0
35	TP-GenerateStickFigures2CV	0	1	0
36	TP-GenerateStickFiguresCV	0	1	0
37	TP-LegoPlotter2.0	0	1	0
38	TP-LegoPlotter2CV	0	1	0
39	TP-LegoPlotterCV	0	1	0
40	TP-Methylation_Clustering_CNMF	0	1	0
41	TP-miR_Clustering_CNMF	1	0	0
42	TP-miR_Clustering_Consensus_Plus	1	0	0
43	TP-miR_FindDirectTargets	1	0	0
44	TP-miRseq_Clustering_CNMF	0	1	0
45	TP-miRseq_Clustering_Consensus_Plus	0	1	0
46	TP-miRseq_FindDirectTargets	0	1	0
47	TP-miRseq_Mature_Clustering_CNMF	0	1	0
48	TP-miRseq_Mature_Clustering_Consensus_Plus	0	1	0
49	TP-mRNA_Clustering_CNMF	1	0	0
50	TP-mRNA_Clustering_Consensus_Plus	1	0	0
51	TP-mRNAseq_Clustering_CNMF	0	1	0
52	TP-mRNAseq_Clustering_Consensus_Plus	0	1	0
53	TP-Mutation_APOBEC	0	1	0
54	TP-Mutation_Assessor	0	1	0
55	TP-Mutation_CHASM	0	1	0
56	TP-Mutation_CoOccurrence	0	1	0
57	TP-Mutation_CoOccurrence_Custom	1	0	0
58	TP-MutSigNozzleReport2.0	0	1	0
59	TP-MutSigNozzleReport2CV	0	1	0
60	TP-MutSigNozzleReportCV	0	1	0
61	TP-MutSigPreprocess2.0	0	1	0
62	TP-MutSigRun2.0	0	1	0
63	TP-MutSigRun2CV	0	1	0
64	TP-MutSigRunCV	0	1	0
65	TP-Paradigm_mRNA	1	0	0
66	TP-Paradigm_mRNA_And_CopyNumber	1	0	0
67	TP-Paradigm_Prepare_mRNA	1	0	0
68	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0
69	TP-Paradigm_Prepare_RNASeq	0	1	0
70	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1	0
71	TP-Paradigm_Preprocess_mRNA	1	0	0
72	TP-ParadigmPreprocess_mRNA	1	0	0
73	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0
74	TP-Paradigm_Preprocess_RNASeq	0	1	0
75	TP-ParadigmPreprocess_RNASeq	0	1	0
76	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1	0
77	TP-Paradigm_Report_Preprocess_mRNA	1	0	0
78	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0
79	TP-Paradigm_Report_Preprocess_RNASeq	0	1	0
80	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1	0
81	TP-Paradigm_RNASeq	0	1	0
82	TP-Paradigm_RNASeq_And_Copy_Number	0	1	0
83	TP-Pathway_FindEnrichedGenes	1	0	0
84	TP-Pathway_GSEA_mRNAseq	0	1	0
85	TP-Pathway_Hotnet	0	0	1
86	TP-Pathway_Overlaps_MSigDB_MutSig2CV	0	1	0
87	TP-Pathway_Paradigm_mRNA	1	0	0
88	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0
89	TP-Pathway_Paradigm_RNASeq	0	1	0
90	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1	0
91	TP-ProcessCoverageForMutSig2.0	0	1	0
92	TP-RPPA_Clustering_CNMF	0	1	0
93	TP-RPPA_Clustering_Consensus_Plus	0	1	0
	Total	26	66	1

This table generated on Fri Nov 20 19:47:41 2015

Broad GDAC Analyses Status analyses__2015_08_21__ucs Run for Tumor Type: UCS

Broad GDAC Analyses Status
analyses__2015_08_21__ucs Run for Tumor Type: UCS