[1] "ofn"       "-oTACC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/20124001/ACC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/19778621/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=90, common to both=90
[1] 82 90
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                4                86 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                4                86 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                82 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                82 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13                77 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13                77 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               12                78 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               12                78 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               13                77 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               13                77 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               15                75 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               15                75 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               37                53 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               37                53 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               33                57 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               33                57 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               57                33 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               57                33 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               53                37 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               53                37 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               18                72 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               18                72 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16                74 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16                74 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               48                42 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               48                42 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               48                42 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               48                42 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32                58 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32                58 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               38                52 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               38                52 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               20                70 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               20                70 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               29                61 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               29                61 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                25                 65 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                25                 65 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                26                 64 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                26                 64 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 85 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 85 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                 84 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                 84 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                64                 26 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                64                 26 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                64                 26 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                64                 26 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 84 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 84 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 69 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 69 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                 79 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                 79 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                49                 41 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                49                 41 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                47                 43 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                47                 43 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 85 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 85 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 7                 83 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 7                 83 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 84 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 84 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                 85 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                 85 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                56                 34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                56                 34 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                52                 38 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                52                 38 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                46                 44 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                46                 44 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                49                 41 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                49                 41 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                31                 59 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                31                 59 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 87 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 87 
[1] "XP GAIN MUTATION ANALYSIS"
[1] 3
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               42                48 
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               42                48 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               41                49 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               41                49 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               29                61 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               29                61 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               20                70 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               20                70 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               17                73 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               17                73 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15                75 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15                75 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                70 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                70 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               20                70 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               20                70 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               10                80 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               10                80 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               11                79 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               11                79 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8                82 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8                82 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7                83 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7                83 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19                71 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19                71 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22                68 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22                68 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5                85 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5                85 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6                84 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6                84 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               16                74 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               16                74 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12                78 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12                78 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               20                70 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               20                70 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                79 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                12                 78 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                12                 78 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 80 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 80 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                 66 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                 66 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                 67 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                 67 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                 85 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                 85 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                 86 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                 86 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                 51 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                 51 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 72 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 72 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                21                 69 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                21                 69 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 6                 84 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 6                 84 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 85 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 85 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                32                 58 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                32                 58 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                 66 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                 66 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                 53 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                 53 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                35                 55 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                35                 55 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 5                 85 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 5                 85 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 86 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 86 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 9                 81 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 9                 81 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 87 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 87 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                15                 75 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                15                 75 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                48                 42 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                48                 42 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               16                74 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               16                74 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               15                75 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               15                75 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 90 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 90 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=2, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        4      0      0      0
  1P GAIN WILD-TYPE     32     26     16     12
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                32
  CLUS_2               0                26
  CLUS_3               0                16
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        1      0      0      1      0
  1P GAIN WILD-TYPE     17     11     20     17     11
D1V2, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
D1V3, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    1  0
  1P GAIN WILD-TYPE 22 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1    0
  1P GAIN WILD-TYPE   22   22
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               0                22
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1P GAIN MUTATED        0      0      0      0      1      0      0      0
  1P GAIN WILD-TYPE      8      7      7      3      3      4      6      6
D1V4, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                1                44 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J6        TCGA-OR-A5J7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J8        TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JY        TCGA-OR-A5JZ        TCGA-OR-A5K0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K1        TCGA-OR-A5K3        TCGA-OR-A5K4        TCGA-OR-A5K5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K6        TCGA-OR-A5K8        TCGA-OR-A5KO        TCGA-OR-A5KU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LD        TCGA-OR-A5LG        TCGA-OR-A5LH        TCGA-OR-A5LJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LM        TCGA-OR-A5LN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LS        TCGA-OR-A5LT 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OU-A5PI        TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        2      0      0      0
  1P GAIN WILD-TYPE     22     13     17     23
D1V5, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                75 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5J9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG        TCGA-OR-A5JI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ        TCGA-OR-A5K0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3        TCGA-OR-A5K4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8        TCGA-OR-A5KO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG        TCGA-OR-A5LH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-PA-A5YG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        1      0      1      0
  1P GAIN WILD-TYPE     22     23      6     24
D1V6, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                75 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5J9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG        TCGA-OR-A5JI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ        TCGA-OR-A5K0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3        TCGA-OR-A5K4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8        TCGA-OR-A5KO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG        TCGA-OR-A5LH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-PA-A5YG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      1      0
  1P GAIN WILD-TYPE     35     15     26
D1V7, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        0      1      0      1      0
  1P GAIN WILD-TYPE     16     26     11     19      4
D1V8, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      1      0
  1P GAIN WILD-TYPE     27     21     27
D1V9, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                75 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-PA-A5YG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      0      1
  1P GAIN WILD-TYPE     38     24     13
D1V10, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                75 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-PA-A5YG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        7      0      1      0
  1Q GAIN WILD-TYPE     29     26     15     12
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                29
  CLUS_2               0                26
  CLUS_3               1                15
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        3      1      1      1      0
  1Q GAIN WILD-TYPE     15     10     19     17     11
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               1                10
  CLUS_3               1                19
  CLUS_4               1                17
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V3, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED    3  1
  1Q GAIN WILD-TYPE 20 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      3    1
  1Q GAIN WILD-TYPE   20   21
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2               1                21
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1Q GAIN MUTATED        2      1      0      0      1      0      0      0
  1Q GAIN WILD-TYPE      6      6      7      3      3      4      6      6
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               0                 6
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        4      2      0      0
  1Q GAIN WILD-TYPE     20     11     17     23
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                11
  CLUS_3               0                17
  CLUS_4               0                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        4      1      1      0
  1Q GAIN WILD-TYPE     19     22      6     24
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               1                22
  CLUS_3               1                 6
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      3      0
  1Q GAIN WILD-TYPE     33     13     26
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                33
  CLUS_2               3                13
  CLUS_3               0                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        0      2      0      4      0
  1Q GAIN WILD-TYPE     16     25     11     16      4
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                25
  CLUS_3               0                11
  CLUS_4               4                16
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      3      0
  1Q GAIN WILD-TYPE     25     19     27
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                25
  CLUS_2               3                19
  CLUS_3               0                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      1      1
  1Q GAIN WILD-TYPE     35     23     13
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2               1                23
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       11      1      1      0
  2P GAIN WILD-TYPE     25     25     15     12
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                25
  CLUS_2               1                25
  CLUS_3               1                15
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        7      1      0      1      0
  2P GAIN WILD-TYPE     11     10     20     17     11
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               1                10
  CLUS_3               0                20
  CLUS_4               1                17
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V3, binary
                   cls
clus                 0  1
  2P GAIN MUTATED    1  5
  2P GAIN WILD-TYPE 22 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      1    5
  2P GAIN WILD-TYPE   22   17
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2P GAIN MUTATED        1      1      1      2      0      0      0      1
  2P GAIN WILD-TYPE      7      6      6      1      4      4      6      5
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               2                 1
  CLUS_5               0                 4
  CLUS_6               0                 4
  CLUS_7               0                 6
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        7      0      0      2
  2P GAIN WILD-TYPE     17     13     17     21
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               0                13
  CLUS_3               0                17
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        8      0      1      0
  2P GAIN WILD-TYPE     15     23      6     24
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                15
  CLUS_2               0                23
  CLUS_3               1                 6
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        6      2      1
  2P GAIN WILD-TYPE     30     14     25
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                30
  CLUS_2               2                14
  CLUS_3               1                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        0      1      1      6      1
  2P GAIN WILD-TYPE     16     26     10     14      3
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                26
  CLUS_3               1                10
  CLUS_4               6                14
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        3      5      1
  2P GAIN WILD-TYPE     25     17     26
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                25
  CLUS_2               5                17
  CLUS_3               1                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        8      1      0
  2P GAIN WILD-TYPE     31     23     14
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                31
  CLUS_2               1                23
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        9      1      2      0
  2Q GAIN WILD-TYPE     27     25     14     12
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                27
  CLUS_2               1                25
  CLUS_3               2                14
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        6      0      0      1      0
  2Q GAIN WILD-TYPE     12     11     20     17     11
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2               0                11
  CLUS_3               0                20
  CLUS_4               1                17
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V3, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED    2  3
  2Q GAIN WILD-TYPE 21 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2    3
  2Q GAIN WILD-TYPE   21   19
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2Q GAIN MUTATED        1      1      1      2      0      0      0      0
  2Q GAIN WILD-TYPE      7      6      6      1      4      4      6      6
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               2                 1
  CLUS_5               0                 4
  CLUS_6               0                 4
  CLUS_7               0                 6
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6      0      0      1
  2Q GAIN WILD-TYPE     18     13     17     22
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                13
  CLUS_3               0                17
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6      0      1      0
  2Q GAIN WILD-TYPE     17     23      6     24
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2               0                23
  CLUS_3               1                 6
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        6      1      0
  2Q GAIN WILD-TYPE     30     15     26
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                30
  CLUS_2               1                15
  CLUS_3               0                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        0      0      1      6      0
  2Q GAIN WILD-TYPE     16     27     10     14      4
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                16
  CLUS_2               0                27
  CLUS_3               1                10
  CLUS_4               6                14
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        2      5      0
  2Q GAIN WILD-TYPE     26     17     27
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                26
  CLUS_2               5                17
  CLUS_3               0                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        7      0      0
  2Q GAIN WILD-TYPE     32     24     14
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                32
  CLUS_2               0                24
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        5      3      1      4
  3P GAIN WILD-TYPE     31     23     15      8
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                31
  CLUS_2               3                23
  CLUS_3               1                15
  CLUS_4               4                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        0      3      1      4      2
  3P GAIN WILD-TYPE     18      8     19     14      9
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                 8
  CLUS_3               1                19
  CLUS_4               4                14
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V3, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    5  3
  3P GAIN WILD-TYPE 18 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      5    3
  3P GAIN WILD-TYPE   18   19
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P GAIN MUTATED        1      1      1      0      1      2      1      1
  3P GAIN WILD-TYPE      7      6      6      3      3      2      5      5
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               2                 2
  CLUS_7               1                 5
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        1      3      2      4
  3P GAIN WILD-TYPE     23     10     15     19
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                10
  CLUS_3               2                15
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        1      3      1      5
  3P GAIN WILD-TYPE     22     20      6     19
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               3                20
  CLUS_3               1                 6
  CLUS_4               5                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      2      5
  3P GAIN WILD-TYPE     33     14     21
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                33
  CLUS_2               2                14
  CLUS_3               5                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        0      6      2      1      1
  3P GAIN WILD-TYPE     16     21      9     19      3
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                16
  CLUS_2               6                21
  CLUS_3               2                 9
  CLUS_4               1                19
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      2      5
  3P GAIN WILD-TYPE     25     20     22
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                25
  CLUS_2               2                20
  CLUS_3               5                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      5      2
  3P GAIN WILD-TYPE     36     19     12
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                36
  CLUS_2               5                19
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        5      3      3      4
  3Q GAIN WILD-TYPE     31     23     13      8
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                31
  CLUS_2               3                23
  CLUS_3               3                13
  CLUS_4               4                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        0      4      2      4      2
  3Q GAIN WILD-TYPE     18      7     18     14      9
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               0                18
  CLUS_2               4                 7
  CLUS_3               2                18
  CLUS_4               4                14
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V3, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED    6  4
  3Q GAIN WILD-TYPE 17 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      6    4
  3Q GAIN WILD-TYPE   17   18
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2               4                18
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q GAIN MUTATED        3      1      1      0      1      2      1      1
  3Q GAIN WILD-TYPE      5      6      6      3      3      2      5      5
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               2                 2
  CLUS_7               1                 5
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        1      5      2      4
  3Q GAIN WILD-TYPE     23      8     15     19
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               5                 8
  CLUS_3               2                15
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        2      4      1      5
  3Q GAIN WILD-TYPE     21     19      6     19
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2               4                19
  CLUS_3               1                 6
  CLUS_4               5                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      3      5
  3Q GAIN WILD-TYPE     32     13     21
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                32
  CLUS_2               3                13
  CLUS_3               5                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        0      6      2      3      1
  3Q GAIN WILD-TYPE     16     21      9     17      3
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               0                16
  CLUS_2               6                21
  CLUS_3               2                 9
  CLUS_4               3                17
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        5      2      5
  3Q GAIN WILD-TYPE     23     20     22
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                23
  CLUS_2               2                20
  CLUS_3               5                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        5      5      2
  3Q GAIN WILD-TYPE     34     19     12
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                34
  CLUS_2               5                19
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        4     13     12      8
  4P GAIN WILD-TYPE     32     13      4      4
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                32
  CLUS_2              13                13
  CLUS_3              12                 4
  CLUS_4               8                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        3      4     13      6      5
  4P GAIN WILD-TYPE     15      7      7     12      6
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               4                 7
  CLUS_3              13                 7
  CLUS_4               6                12
  CLUS_5               5                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V3, binary
                   cls
clus                 0  1
  4P GAIN MUTATED   11  9
  4P GAIN WILD-TYPE 12 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     11    9
  4P GAIN WILD-TYPE   12   13
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              11                12
  CLUS_2               9                13
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4P GAIN MUTATED        3      3      2      1      1      3      5      2
  4P GAIN WILD-TYPE      5      4      5      2      3      1      1      4
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               3                 4
  CLUS_3               2                 5
  CLUS_4               1                 2
  CLUS_5               1                 3
  CLUS_6               3                 1
  CLUS_7               5                 1
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        1      8     11     10
  4P GAIN WILD-TYPE     23      5      6     13
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               8                 5
  CLUS_3              11                 6
  CLUS_4              10                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2     15      0     13
  4P GAIN WILD-TYPE     21      8      7     11
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2              15                 8
  CLUS_3               0                 7
  CLUS_4              13                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       14      4     13
  4P GAIN WILD-TYPE     22     12     13
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14                22
  CLUS_2               4                12
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED       11     10      5      2      3
  4P GAIN WILD-TYPE      5     17      6     18      1
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              11                 5
  CLUS_2              10                17
  CLUS_3               5                 6
  CLUS_4               2                18
  CLUS_5               3                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       11      6     13
  4P GAIN WILD-TYPE     17     16     14
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              11                17
  CLUS_2               6                16
  CLUS_3              13                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       14     10      6
  4P GAIN WILD-TYPE     25     14      8
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14                25
  CLUS_2              10                14
  CLUS_3               6                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        3     12     11      7
  4Q GAIN WILD-TYPE     33     14      5      5
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                33
  CLUS_2              12                14
  CLUS_3              11                 5
  CLUS_4               7                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        2      4     12      6      4
  4Q GAIN WILD-TYPE     16      7      8     12      7
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               4                 7
  CLUS_3              12                 8
  CLUS_4               6                12
  CLUS_5               4                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V3, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    9  8
  4Q GAIN WILD-TYPE 14 14
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      9    8
  4Q GAIN WILD-TYPE   14   14
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               9                14
  CLUS_2               8                14
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4Q GAIN MUTATED        3      3      2      0      1      3      3      2
  4Q GAIN WILD-TYPE      5      4      5      3      3      1      3      4
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               3                 4
  CLUS_3               2                 5
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               3                 1
  CLUS_7               3                 3
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      8      9     10
  4Q GAIN WILD-TYPE     24      5      8     13
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                24
  CLUS_2               8                 5
  CLUS_3               9                 8
  CLUS_4              10                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        1     15      0     11
  4Q GAIN WILD-TYPE     22      8      7     13
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2              15                 8
  CLUS_3               0                 7
  CLUS_4              11                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13      4     11
  4Q GAIN WILD-TYPE     23     12     15
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13                23
  CLUS_2               4                12
  CLUS_3              11                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED       10      9      5      1      3
  4Q GAIN WILD-TYPE      6     18      6     19      1
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10                 6
  CLUS_2               9                18
  CLUS_3               5                 6
  CLUS_4               1                19
  CLUS_5               3                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       11      5     11
  4Q GAIN WILD-TYPE     17     17     16
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              11                17
  CLUS_2               5                17
  CLUS_3              11                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13      9      5
  4Q GAIN WILD-TYPE     26     15      9
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13                26
  CLUS_2               9                15
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       10     24     14      9
  5P GAIN WILD-TYPE     26      2      2      3
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              10                26
  CLUS_2              24                 2
  CLUS_3              14                 2
  CLUS_4               9                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        7      5     15     14      9
  5P GAIN WILD-TYPE     11      6      5      4      2
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               5                 6
  CLUS_3              15                 5
  CLUS_4              14                 4
  CLUS_5               9                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V3, binary
                   cls
clus                 0  1
  5P GAIN MUTATED   18 12
  5P GAIN WILD-TYPE  5 10
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     18   12
  5P GAIN WILD-TYPE    5   10
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              18                 5
  CLUS_2              12                10
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P GAIN MUTATED        4      5      6      1      4      4      5      1
  5P GAIN WILD-TYPE      4      2      1      2      0      0      1      5
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               5                 2
  CLUS_3               6                 1
  CLUS_4               1                 2
  CLUS_5               4                 0
  CLUS_6               4                 0
  CLUS_7               5                 1
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        7     10     14     18
  5P GAIN WILD-TYPE     17      3      3      5
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                 3
  CLUS_3              14                 3
  CLUS_4              18                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        6     18      3     22
  5P GAIN WILD-TYPE     17      5      4      2
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2              18                 5
  CLUS_3               3                 4
  CLUS_4              22                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       21      9     20
  5P GAIN WILD-TYPE     15      7      6
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              21                15
  CLUS_2               9                 7
  CLUS_3              20                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED       11     19      9      9      2
  5P GAIN WILD-TYPE      5      8      2     11      2
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              11                 5
  CLUS_2              19                 8
  CLUS_3               9                 2
  CLUS_4               9                11
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       18     10     21
  5P GAIN WILD-TYPE     10     12      6
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              18                10
  CLUS_2              10                12
  CLUS_3              21                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       22     18      9
  5P GAIN WILD-TYPE     17      6      5
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              22                17
  CLUS_2              18                 6
  CLUS_3               9                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        8     21     14     10
  5Q GAIN WILD-TYPE     28      5      2      2
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                28
  CLUS_2              21                 5
  CLUS_3              14                 2
  CLUS_4              10                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        7      4     17     11      9
  5Q GAIN WILD-TYPE     11      7      3      7      2
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               4                 7
  CLUS_3              17                 3
  CLUS_4              11                 7
  CLUS_5               9                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V3, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED   16 13
  5Q GAIN WILD-TYPE  7  9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     16   13
  5Q GAIN WILD-TYPE    7    9
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              16                 7
  CLUS_2              13                 9
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q GAIN MUTATED        3      6      5      1      4      3      5      2
  5Q GAIN WILD-TYPE      5      1      2      2      0      1      1      4
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               6                 1
  CLUS_3               5                 2
  CLUS_4               1                 2
  CLUS_5               4                 0
  CLUS_6               3                 1
  CLUS_7               5                 1
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        7     10     15     15
  5Q GAIN WILD-TYPE     17      3      2      8
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                 3
  CLUS_3              15                 2
  CLUS_4              15                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        5     19      3     20
  5Q GAIN WILD-TYPE     18      4      4      4
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              19                 4
  CLUS_3               3                 4
  CLUS_4              20                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       20      9     19
  5Q GAIN WILD-TYPE     16      7      7
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              20                16
  CLUS_2               9                 7
  CLUS_3              19                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED       10     19      9      8      2
  5Q GAIN WILD-TYPE      6      8      2     12      2
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              10                 6
  CLUS_2              19                 8
  CLUS_3               9                 2
  CLUS_4               8                12
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       16     11     20
  5Q GAIN WILD-TYPE     12     11      7
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              16                12
  CLUS_2              11                11
  CLUS_3              20                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       20     18      9
  5Q GAIN WILD-TYPE     19      6      5
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              20                19
  CLUS_2              18                 6
  CLUS_3               9                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        7      1      5      5
  6P GAIN WILD-TYPE     29     25     11      7
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                29
  CLUS_2               1                25
  CLUS_3               5                11
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        5      1      3      5      2
  6P GAIN WILD-TYPE     13     10     17     13      9
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2               1                10
  CLUS_3               3                17
  CLUS_4               5                13
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V3, binary
                   cls
clus                 0  1
  6P GAIN MUTATED    4  5
  6P GAIN WILD-TYPE 19 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      4    5
  6P GAIN WILD-TYPE   19   17
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6P GAIN MUTATED        1      2      2      1      1      1      1      0
  6P GAIN WILD-TYPE      7      5      5      2      3      3      5      6
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               2                 5
  CLUS_3               2                 5
  CLUS_4               1                 2
  CLUS_5               1                 3
  CLUS_6               1                 3
  CLUS_7               1                 5
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        6      0      6      3
  6P GAIN WILD-TYPE     18     13     11     20
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                13
  CLUS_3               6                11
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        4      4      3      4
  6P GAIN WILD-TYPE     19     19      4     20
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               4                19
  CLUS_3               3                 4
  CLUS_4               4                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       11      2      3
  6P GAIN WILD-TYPE     25     14     23
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                25
  CLUS_2               2                14
  CLUS_3               3                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        5      2      5      4      0
  6P GAIN WILD-TYPE     11     25      6     16      4
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                11
  CLUS_2               2                25
  CLUS_3               5                 6
  CLUS_4               4                16
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        8      3      4
  6P GAIN WILD-TYPE     20     19     23
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               8                20
  CLUS_2               3                19
  CLUS_3               4                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       10      2      3
  6P GAIN WILD-TYPE     29     22     11
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              10                29
  CLUS_2               2                22
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        8      1      3      4
  6Q GAIN WILD-TYPE     28     25     13      8
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                28
  CLUS_2               1                25
  CLUS_3               3                13
  CLUS_4               4                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        3      0      4      5      2
  6Q GAIN WILD-TYPE     15     11     16     13      9
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               0                11
  CLUS_3               4                16
  CLUS_4               5                13
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V3, binary
                   cls
clus                 0  1
  6Q GAIN MUTATED    5  3
  6Q GAIN WILD-TYPE 18 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      5    3
  6Q GAIN WILD-TYPE   18   19
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6Q GAIN MUTATED        1      1      3      0      1      1      1      0
  6Q GAIN WILD-TYPE      7      6      4      3      3      3      5      6
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               3                 4
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               1                 3
  CLUS_7               1                 5
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        5      0      5      4
  6Q GAIN WILD-TYPE     19     13     12     19
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               0                13
  CLUS_3               5                12
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        3      3      3      5
  6Q GAIN WILD-TYPE     20     20      4     19
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2               3                20
  CLUS_3               3                 4
  CLUS_4               5                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        9      1      4
  6Q GAIN WILD-TYPE     27     15     22
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                27
  CLUS_2               1                15
  CLUS_3               4                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        4      2      4      4      0
  6Q GAIN WILD-TYPE     12     25      7     16      4
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               4                12
  CLUS_2               2                25
  CLUS_3               4                 7
  CLUS_4               4                16
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        7      1      5
  6Q GAIN WILD-TYPE     21     21     22
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                21
  CLUS_2               1                21
  CLUS_3               5                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        8      2      3
  6Q GAIN WILD-TYPE     31     22     11
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                31
  CLUS_2               2                22
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        8     20     12      8
  7P GAIN WILD-TYPE     28      6      4      4
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               8                28
  CLUS_2              20                 6
  CLUS_3              12                 4
  CLUS_4               8                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        5      6     14     10      7
  7P GAIN WILD-TYPE     13      5      6      8      4
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2               6                 5
  CLUS_3              14                 6
  CLUS_4              10                 8
  CLUS_5               7                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V3, binary
                   cls
clus                 0  1
  7P GAIN MUTATED   16 13
  7P GAIN WILD-TYPE  7  9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     16   13
  7P GAIN WILD-TYPE    7    9
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                 7
  CLUS_2              13                 9
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7P GAIN MUTATED        5      7      5      1      3      3      4      1
  7P GAIN WILD-TYPE      3      0      2      2      1      1      2      5
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               7                 0
  CLUS_3               5                 2
  CLUS_4               1                 2
  CLUS_5               3                 1
  CLUS_6               3                 1
  CLUS_7               4                 2
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        6     12     13     11
  7P GAIN WILD-TYPE     18      1      4     12
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2              12                 1
  CLUS_3              13                 4
  CLUS_4              11                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        7     19      2     14
  7P GAIN WILD-TYPE     16      4      5     10
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2              19                 4
  CLUS_3               2                 5
  CLUS_4              14                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       20      9     13
  7P GAIN WILD-TYPE     16      7     13
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              20                16
  CLUS_2               9                 7
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       11     15      6      8      2
  7P GAIN WILD-TYPE      5     12      5     12      2
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              11                 5
  CLUS_2              15                12
  CLUS_3               6                 5
  CLUS_4               8                12
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       18      9     14
  7P GAIN WILD-TYPE     10     13     13
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              18                10
  CLUS_2               9                13
  CLUS_3              14                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       21     15      5
  7P GAIN WILD-TYPE     18      9      9
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                18
  CLUS_2              15                 9
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        7     20     13      8
  7Q GAIN WILD-TYPE     29      6      3      4
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                29
  CLUS_2              20                 6
  CLUS_3              13                 3
  CLUS_4               8                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        5      6     14     10      7
  7Q GAIN WILD-TYPE     13      5      6      8      4
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2               6                 5
  CLUS_3              14                 6
  CLUS_4              10                 8
  CLUS_5               7                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V3, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED   16 13
  7Q GAIN WILD-TYPE  7  9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     16   13
  7Q GAIN WILD-TYPE    7    9
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                 7
  CLUS_2              13                 9
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7Q GAIN MUTATED        6      6      5      1      3      3      4      1
  7Q GAIN WILD-TYPE      2      1      2      2      1      1      2      5
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                 2
  CLUS_2               6                 1
  CLUS_3               5                 2
  CLUS_4               1                 2
  CLUS_5               3                 1
  CLUS_6               3                 1
  CLUS_7               4                 2
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        5     13     13     11
  7Q GAIN WILD-TYPE     19      0      4     12
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2              13                 0
  CLUS_3              13                 4
  CLUS_4              11                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        6     20      2     14
  7Q GAIN WILD-TYPE     17      3      5     10
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2              20                 3
  CLUS_3               2                 5
  CLUS_4              14                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       20      9     13
  7Q GAIN WILD-TYPE     16      7     13
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                16
  CLUS_2               9                 7
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       11     16      6      7      2
  7Q GAIN WILD-TYPE      5     11      5     13      2
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              11                 5
  CLUS_2              16                11
  CLUS_3               6                 5
  CLUS_4               7                13
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       18      9     14
  7Q GAIN WILD-TYPE     10     13     13
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18                10
  CLUS_2               9                13
  CLUS_3              14                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       20     16      5
  7Q GAIN WILD-TYPE     19      8      9
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                19
  CLUS_2              16                 8
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        5     18      4      5
  8P GAIN WILD-TYPE     31      8     12      7
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                31
  CLUS_2              18                 8
  CLUS_3               4                12
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        7      2      4      9      6
  8P GAIN WILD-TYPE     11      9     16      9      5
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               2                 9
  CLUS_3               4                16
  CLUS_4               9                 9
  CLUS_5               6                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V3, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    9  5
  8P GAIN WILD-TYPE 14 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      9    5
  8P GAIN WILD-TYPE   14   17
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                14
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P GAIN MUTATED        2      2      3      1      1      3      2      0
  8P GAIN WILD-TYPE      6      5      4      2      3      1      4      6
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               2                 5
  CLUS_3               3                 4
  CLUS_4               1                 2
  CLUS_5               1                 3
  CLUS_6               3                 1
  CLUS_7               2                 4
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        5      4      6     12
  8P GAIN WILD-TYPE     19      9     11     11
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               4                 9
  CLUS_3               6                11
  CLUS_4              12                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        5      9      1     12
  8P GAIN WILD-TYPE     18     14      6     12
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2               9                14
  CLUS_3               1                 6
  CLUS_4              12                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       12      3     13
  8P GAIN WILD-TYPE     24     13     13
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                24
  CLUS_2               3                13
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        8     11      5      4      0
  8P GAIN WILD-TYPE      8     16      6     16      4
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               8                 8
  CLUS_2              11                16
  CLUS_3               5                 6
  CLUS_4               4                16
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       11      5     12
  8P GAIN WILD-TYPE     17     17     15
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                17
  CLUS_2               5                17
  CLUS_3              12                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       12     11      5
  8P GAIN WILD-TYPE     27     13      9
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                27
  CLUS_2              11                13
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        9     20      4      5
  8Q GAIN WILD-TYPE     27      6     12      7
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               9                27
  CLUS_2              20                 6
  CLUS_3               4                12
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        9      3      5      9      6
  8Q GAIN WILD-TYPE      9      8     15      9      5
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               9                 9
  CLUS_2               3                 8
  CLUS_3               5                15
  CLUS_4               9                 9
  CLUS_5               6                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V3, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    9  7
  8Q GAIN WILD-TYPE 14 15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      9    7
  8Q GAIN WILD-TYPE   14   15
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               9                14
  CLUS_2               7                15
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q GAIN MUTATED        3      3      3      1      1      3      2      0
  8Q GAIN WILD-TYPE      5      4      4      2      3      1      4      6
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               3                 4
  CLUS_3               3                 4
  CLUS_4               1                 2
  CLUS_5               1                 3
  CLUS_6               3                 1
  CLUS_7               2                 4
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        7      6      6     12
  8Q GAIN WILD-TYPE     17      7     11     11
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               6                 7
  CLUS_3               6                11
  CLUS_4              12                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        7     11      1     12
  8Q GAIN WILD-TYPE     16     12      6     12
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2              11                12
  CLUS_3               1                 6
  CLUS_4              12                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       14      5     13
  8Q GAIN WILD-TYPE     22     11     13
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                22
  CLUS_2               5                11
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        9     12      5      6      0
  8Q GAIN WILD-TYPE      7     15      6     14      4
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               9                 7
  CLUS_2              12                15
  CLUS_3               5                 6
  CLUS_4               6                14
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       12      7     13
  8Q GAIN WILD-TYPE     16     15     14
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              12                16
  CLUS_2               7                15
  CLUS_3              13                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       15     12      5
  8Q GAIN WILD-TYPE     24     12      9
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              15                24
  CLUS_2              12                12
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        2      4     10      4
  9P GAIN WILD-TYPE     34     22      6      8
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                34
  CLUS_2               4                22
  CLUS_3              10                 6
  CLUS_4               4                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      5      8      0      1
  9P GAIN WILD-TYPE     16      6     12     18     10
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               5                 6
  CLUS_3               8                12
  CLUS_4               0                18
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V3, binary
                   cls
clus                 0  1
  9P GAIN MUTATED    1  9
  9P GAIN WILD-TYPE 22 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      1    9
  9P GAIN WILD-TYPE   22   13
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               9                13
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P GAIN MUTATED        2      4      0      1      0      1      0      2
  9P GAIN WILD-TYPE      6      3      7      2      4      3      6      4
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               4                 3
  CLUS_3               0                 7
  CLUS_4               1                 2
  CLUS_5               0                 4
  CLUS_6               1                 3
  CLUS_7               0                 6
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        1      6      5      3
  9P GAIN WILD-TYPE     23      7     12     20
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               6                 7
  CLUS_3               5                12
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3     10      0      2
  9P GAIN WILD-TYPE     20     13      7     22
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2              10                13
  CLUS_3               0                 7
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        9      4      3
  9P GAIN WILD-TYPE     27     12     23
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               9                27
  CLUS_2               4                12
  CLUS_3               3                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        4      4      2      4      2
  9P GAIN WILD-TYPE     12     23      9     16      2
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                12
  CLUS_2               4                23
  CLUS_3               2                 9
  CLUS_4               4                16
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        8      4      4
  9P GAIN WILD-TYPE     20     18     23
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               8                20
  CLUS_2               4                18
  CLUS_3               4                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       11      4      1
  9P GAIN WILD-TYPE     28     20     13
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11                28
  CLUS_2               4                20
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        8      4     12      5
  9Q GAIN WILD-TYPE     28     22      4      7
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                28
  CLUS_2               4                22
  CLUS_3              12                 4
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        8      5      9      0      1
  9Q GAIN WILD-TYPE     10      6     11     18     10
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                10
  CLUS_2               5                 6
  CLUS_3               9                11
  CLUS_4               0                18
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V3, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    2 12
  9Q GAIN WILD-TYPE 21 10
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      2   12
  9Q GAIN WILD-TYPE   21   10
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2              12                10
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q GAIN MUTATED        5      4      0      1      1      1      0      2
  9Q GAIN WILD-TYPE      3      3      7      2      3      3      6      4
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               4                 3
  CLUS_3               0                 7
  CLUS_4               1                 2
  CLUS_5               1                 3
  CLUS_6               1                 3
  CLUS_7               0                 6
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        6      8      5      3
  9Q GAIN WILD-TYPE     18      5     12     20
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               8                 5
  CLUS_3               5                12
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        8     12      0      2
  9Q GAIN WILD-TYPE     15     11      7     22
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                15
  CLUS_2              12                11
  CLUS_3               0                 7
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       13      7      3
  9Q GAIN WILD-TYPE     23      9     23
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13                23
  CLUS_2               7                 9
  CLUS_3               3                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        5      7      2      6      3
  9Q GAIN WILD-TYPE     11     20      9     14      1
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5                11
  CLUS_2               7                20
  CLUS_3               2                 9
  CLUS_4               6                14
  CLUS_5               3                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       10      9      4
  9Q GAIN WILD-TYPE     18     13     23
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              10                18
  CLUS_2               9                13
  CLUS_3               4                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       15      7      1
  9Q GAIN WILD-TYPE     24     17     13
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15                24
  CLUS_2               7                17
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        7      5     11      2
  10P GAIN WILD-TYPE     29     21      5     10
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 29
  CLUS_2                5                 21
  CLUS_3               11                  5
  CLUS_4                2                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        6      5      9      2      1
  10P GAIN WILD-TYPE     12      6     11     16     10
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                5                  6
  CLUS_3                9                 11
  CLUS_4                2                 16
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V3, binary
                    cls
clus                  0  1
  10P GAIN MUTATED    3 11
  10P GAIN WILD-TYPE 20 11
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      3   11
  10P GAIN WILD-TYPE   20   11
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2               11                 11
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P GAIN MUTATED        6      3      0      2      1      1      0      1
  10P GAIN WILD-TYPE      2      4      7      1      3      3      6      5
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                3                  4
  CLUS_3                0                  7
  CLUS_4                2                  1
  CLUS_5                1                  3
  CLUS_6                1                  3
  CLUS_7                0                  6
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        6     11      4      2
  10P GAIN WILD-TYPE     18      2     13     21
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 18
  CLUS_2               11                  2
  CLUS_3                4                 13
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        7     14      1      1
  10P GAIN WILD-TYPE     16      9      6     23
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 16
  CLUS_2               14                  9
  CLUS_3                1                  6
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       13      7      3
  10P GAIN WILD-TYPE     23      9     23
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               13                 23
  CLUS_2                7                  9
  CLUS_3                3                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        5      6      2      8      2
  10P GAIN WILD-TYPE     11     21      9     12      2
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 11
  CLUS_2                6                 21
  CLUS_3                2                  9
  CLUS_4                8                 12
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        9     10      4
  10P GAIN WILD-TYPE     19     12     23
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                 19
  CLUS_2               10                 12
  CLUS_3                4                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       14      5      4
  10P GAIN WILD-TYPE     25     19     10
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               14                 25
  CLUS_2                5                 19
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        9      5     11      1
  10Q GAIN WILD-TYPE     27     21      5     11
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                9                 27
  CLUS_2                5                 21
  CLUS_3               11                  5
  CLUS_4                1                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        7      4      9      2      1
  10Q GAIN WILD-TYPE     11      7     11     16     10
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                4                  7
  CLUS_3                9                 11
  CLUS_4                2                 16
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V3, binary
                    cls
clus                  0  1
  10Q GAIN MUTATED    3 10
  10Q GAIN WILD-TYPE 20 12
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      3   10
  10Q GAIN WILD-TYPE   20   12
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2               10                 12
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10Q GAIN MUTATED        6      2      0      2      1      1      0      1
  10Q GAIN WILD-TYPE      2      5      7      1      3      3      6      5
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                2                  5
  CLUS_3                0                  7
  CLUS_4                2                  1
  CLUS_5                1                  3
  CLUS_6                1                  3
  CLUS_7                0                  6
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        7     11      3      2
  10Q GAIN WILD-TYPE     17      2     14     21
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2               11                  2
  CLUS_3                3                 14
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        8     13      1      1
  10Q GAIN WILD-TYPE     15     10      6     23
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                8                 15
  CLUS_2               13                 10
  CLUS_3                1                  6
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12      8      3
  10Q GAIN WILD-TYPE     24      8     23
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                 24
  CLUS_2                8                  8
  CLUS_3                3                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        5      7      1      8      2
  10Q GAIN WILD-TYPE     11     20     10     12      2
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 11
  CLUS_2                7                 20
  CLUS_3                1                 10
  CLUS_4                8                 12
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        8     11      4
  10Q GAIN WILD-TYPE     20     11     23
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                8                 20
  CLUS_2               11                 11
  CLUS_3                4                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       13      6      4
  10Q GAIN WILD-TYPE     26     18     10
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               13                 26
  CLUS_2                6                 18
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        5      0      0      0
  11P GAIN WILD-TYPE     31     26     16     12
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        1      0      0      1      0
  11P GAIN WILD-TYPE     17     11     20     17     11
D21V2, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
D21V3, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    1  1
  11P GAIN WILD-TYPE 22 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1    1
  11P GAIN WILD-TYPE   22   21
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                1                 21
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P GAIN MUTATED        1      0      0      0      1      0      0      0
  11P GAIN WILD-TYPE      7      7      7      3      3      4      6      6
D21V4, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 43 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JP         TCGA-OR-A5JR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5KO         TCGA-OR-A5KU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5LG         TCGA-OR-A5LH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LS         TCGA-OR-A5LT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-PA-A5YG         TCGA-PK-A5H9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      0      0      0
  11P GAIN WILD-TYPE     22     13     17     23
D21V5, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1      0      1      0
  11P GAIN WILD-TYPE     22     23      6     24
D21V6, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      1      0
  11P GAIN WILD-TYPE     35     15     26
D21V7, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        0      1      0      1      0
  11P GAIN WILD-TYPE     16     26     11     19      4
D21V8, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      2      0
  11P GAIN WILD-TYPE     28     20     27
D21V9, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      0      1
  11P GAIN WILD-TYPE     38     24     13
D21V10, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        5      0      1      0
  11Q GAIN WILD-TYPE     31     26     15     12
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                0                 26
  CLUS_3                1                 15
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        3      0      0      1      0
  11Q GAIN WILD-TYPE     15     11     20     17     11
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                0                 11
  CLUS_3                0                 20
  CLUS_4                1                 17
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V3, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    1  3
  11Q GAIN WILD-TYPE 22 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1    3
  11Q GAIN WILD-TYPE   22   19
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                3                 19
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q GAIN MUTATED        1      1      0      1      1      0      0      0
  11Q GAIN WILD-TYPE      7      6      7      2      3      4      6      6
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  6
  CLUS_3                0                  7
  CLUS_4                1                  2
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                0                  6
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        4      0      0      0
  11Q GAIN WILD-TYPE     20     13     17     23
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        3      0      1      0
  11Q GAIN WILD-TYPE     20     23      6     24
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                0                 23
  CLUS_3                1                  6
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        2      2      0
  11Q GAIN WILD-TYPE     34     14     26
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                 34
  CLUS_2                2                 14
  CLUS_3                0                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        0      1      0      3      0
  11Q GAIN WILD-TYPE     16     26     11     17      4
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                1                 26
  CLUS_3                0                 11
  CLUS_4                3                 17
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      4      0
  11Q GAIN WILD-TYPE     28     18     27
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 28
  CLUS_2                4                 18
  CLUS_3                0                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      0      1
  11Q GAIN WILD-TYPE     36     24     13
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                0                 24
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       14     26     15      9
  12P GAIN WILD-TYPE     22      0      1      3
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               14                 22
  CLUS_2               26                  0
  CLUS_3               15                  1
  CLUS_4                9                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       10      6     17     13      9
  12P GAIN WILD-TYPE      8      5      3      5      2
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                  8
  CLUS_2                6                  5
  CLUS_3               17                  3
  CLUS_4               13                  5
  CLUS_5                9                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V3, binary
                    cls
clus                  0  1
  12P GAIN MUTATED   17 15
  12P GAIN WILD-TYPE  6  7
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     17   15
  12P GAIN WILD-TYPE    6    7
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               17                  6
  CLUS_2               15                  7
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12P GAIN MUTATED        7      5      6      2      2      4      5      1
  12P GAIN WILD-TYPE      1      2      1      1      2      0      1      5
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                  1
  CLUS_2                5                  2
  CLUS_3                6                  1
  CLUS_4                2                  1
  CLUS_5                2                  2
  CLUS_6                4                  0
  CLUS_7                5                  1
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        9     13     14     18
  12P GAIN WILD-TYPE     15      0      3      5
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2               13                  0
  CLUS_3               14                  3
  CLUS_4               18                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       10     20      2     22
  12P GAIN WILD-TYPE     13      3      5      2
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                 13
  CLUS_2               20                  3
  CLUS_3                2                  5
  CLUS_4               22                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       25      9     21
  12P GAIN WILD-TYPE     11      7      5
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               25                 11
  CLUS_2                9                  7
  CLUS_3               21                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       14     20      8     11      2
  12P GAIN WILD-TYPE      2      7      3      9      2
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               14                  2
  CLUS_2               20                  7
  CLUS_3                8                  3
  CLUS_4               11                  9
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       20     12     22
  12P GAIN WILD-TYPE      8     10      5
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               20                  8
  CLUS_2               12                 10
  CLUS_3               22                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       25     20      9
  12P GAIN WILD-TYPE     14      4      5
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               25                 14
  CLUS_2               20                  4
  CLUS_3                9                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       13     26     16      9
  12Q GAIN WILD-TYPE     23      0      0      3
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                 23
  CLUS_2               26                  0
  CLUS_3               16                  0
  CLUS_4                9                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       11      6     17     13      9
  12Q GAIN WILD-TYPE      7      5      3      5      2
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               11                  7
  CLUS_2                6                  5
  CLUS_3               17                  3
  CLUS_4               13                  5
  CLUS_5                9                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V3, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED   18 16
  12Q GAIN WILD-TYPE  5  6
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     18   16
  12Q GAIN WILD-TYPE    5    6
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               18                  5
  CLUS_2               16                  6
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12Q GAIN MUTATED        7      6      6      3      2      4      5      1
  12Q GAIN WILD-TYPE      1      1      1      0      2      0      1      5
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                  1
  CLUS_2                6                  1
  CLUS_3                6                  1
  CLUS_4                3                  0
  CLUS_5                2                  2
  CLUS_6                4                  0
  CLUS_7                5                  1
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       10     13     14     18
  12Q GAIN WILD-TYPE     14      0      3      5
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               10                 14
  CLUS_2               13                  0
  CLUS_3               14                  3
  CLUS_4               18                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       11     20      2     22
  12Q GAIN WILD-TYPE     12      3      5      2
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               11                 12
  CLUS_2               20                  3
  CLUS_3                2                  5
  CLUS_4               22                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       26      9     21
  12Q GAIN WILD-TYPE     10      7      5
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               26                 10
  CLUS_2                9                  7
  CLUS_3               21                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       14     19      8     13      2
  12Q GAIN WILD-TYPE      2      8      3      7      2
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               14                  2
  CLUS_2               19                  8
  CLUS_3                8                  3
  CLUS_4               13                  7
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       20     13     22
  12Q GAIN WILD-TYPE      8      9      5
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                  8
  CLUS_2               13                  9
  CLUS_3               22                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       27     19      9
  12Q GAIN WILD-TYPE     12      5      5
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               27                 12
  CLUS_2               19                  5
  CLUS_3                9                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      2      2      1
  13Q GAIN WILD-TYPE     35     24     14     11
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                2                 24
  CLUS_3                2                 14
  CLUS_4                1                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        1      2      2      0      1
  13Q GAIN WILD-TYPE     17      9     18     18     10
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                  9
  CLUS_3                2                 18
  CLUS_4                0                 18
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V3, binary
                    cls
clus                  0  1
  13Q GAIN MUTATED    2  2
  13Q GAIN WILD-TYPE 21 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      2    2
  13Q GAIN WILD-TYPE   21   20
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  13Q GAIN MUTATED        1      2      0      0      0      0      1      0
  13Q GAIN WILD-TYPE      7      5      7      3      4      4      5      6
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  5
  CLUS_3                0                  7
  CLUS_4                0                  3
  CLUS_5                0                  4
  CLUS_6                0                  4
  CLUS_7                1                  5
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      1      4      0
  13Q GAIN WILD-TYPE     23     12     13     23
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                1                 12
  CLUS_3                4                 13
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        2      3      0      1
  13Q GAIN WILD-TYPE     21     20      7     23
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                3                 20
  CLUS_3                0                  7
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        4      2      0
  13Q GAIN WILD-TYPE     32     14     26
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                2                 14
  CLUS_3                0                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        2      2      1      1      0
  13Q GAIN WILD-TYPE     14     25     10     19      4
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                2                 25
  CLUS_3                1                 10
  CLUS_4                1                 19
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      3      0
  13Q GAIN WILD-TYPE     26     19     27
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 26
  CLUS_2                3                 19
  CLUS_3                0                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      2      0
  13Q GAIN WILD-TYPE     36     22     14
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                2                 22
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        6      4      9      2
  14Q GAIN WILD-TYPE     30     22      7     10
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 30
  CLUS_2                4                 22
  CLUS_3                9                  7
  CLUS_4                2                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        3      3      9      1      2
  14Q GAIN WILD-TYPE     15      8     11     17      9
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                3                  8
  CLUS_3                9                 11
  CLUS_4                1                 17
  CLUS_5                2                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V3, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    2  7
  14Q GAIN WILD-TYPE 21 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      2    7
  14Q GAIN WILD-TYPE   21   15
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                7                 15
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  14Q GAIN MUTATED        2      3      0      1      0      0      1      2
  14Q GAIN WILD-TYPE      6      4      7      2      4      4      5      4
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                3                  4
  CLUS_3                0                  7
  CLUS_4                1                  2
  CLUS_5                0                  4
  CLUS_6                0                  4
  CLUS_7                1                  5
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        2      6      8      1
  14Q GAIN WILD-TYPE     22      7      9     22
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                6                  7
  CLUS_3                8                  9
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        3     12      0      2
  14Q GAIN WILD-TYPE     20     11      7     22
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2               12                 11
  CLUS_3                0                  7
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       17      0      1
  14Q GAIN WILD-TYPE     19     16     25
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 19
  CLUS_2                0                 16
  CLUS_3                1                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        7      0      3      5      3
  14Q GAIN WILD-TYPE      9     27      8     15      1
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                7                  9
  CLUS_2                0                 27
  CLUS_3                3                  8
  CLUS_4                5                 15
  CLUS_5                3                  1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       14      2      1
  14Q GAIN WILD-TYPE     14     20     26
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               14                 14
  CLUS_2                2                 20
  CLUS_3                1                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       17      0      0
  14Q GAIN WILD-TYPE     22     24     14
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 22
  CLUS_2                0                 24
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        2      3      5      1
  15Q GAIN WILD-TYPE     34     23     11     11
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 34
  CLUS_2                3                 23
  CLUS_3                5                 11
  CLUS_4                1                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      2      6      1      1
  15Q GAIN WILD-TYPE     18      9     14     17     10
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                  9
  CLUS_3                6                 14
  CLUS_4                1                 17
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V3, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED    2  4
  15Q GAIN WILD-TYPE 21 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      2    4
  15Q GAIN WILD-TYPE   21   18
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                4                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  15Q GAIN MUTATED        1      2      0      0      1      0      1      1
  15Q GAIN WILD-TYPE      7      5      7      3      3      4      5      5
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  5
  CLUS_3                0                  7
  CLUS_4                0                  3
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                1                  5
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        0      3      5      2
  15Q GAIN WILD-TYPE     24     10     12     21
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                3                 10
  CLUS_3                5                 12
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      8      0      1
  15Q GAIN WILD-TYPE     22     15      7     23
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                8                 15
  CLUS_3                0                  7
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        7      1      2
  15Q GAIN WILD-TYPE     29     15     24
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                 29
  CLUS_2                1                 15
  CLUS_3                2                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        6      1      1      0      2
  15Q GAIN WILD-TYPE     10     26     10     20      2
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 10
  CLUS_2                1                 26
  CLUS_3                1                 10
  CLUS_4                0                 20
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        5      2      2
  15Q GAIN WILD-TYPE     23     20     25
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 23
  CLUS_2                2                 20
  CLUS_3                2                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        7      1      1
  15Q GAIN WILD-TYPE     32     23     13
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                1                 23
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        6     26     11      6
  16P GAIN WILD-TYPE     30      0      5      6
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 30
  CLUS_2               26                  0
  CLUS_3               11                  5
  CLUS_4                6                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        4      6     16     10      6
  16P GAIN WILD-TYPE     14      5      4      8      5
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                6                  5
  CLUS_3               16                  4
  CLUS_4               10                  8
  CLUS_5                6                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V3, binary
                    cls
clus                  0  1
  16P GAIN MUTATED   12 12
  16P GAIN WILD-TYPE 11 10
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     12   12
  16P GAIN WILD-TYPE   11   10
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                 11
  CLUS_2               12                 10
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P GAIN MUTATED        3      7      4      0      1      3      4      2
  16P GAIN WILD-TYPE      5      0      3      3      3      1      2      4
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                7                  0
  CLUS_3                4                  3
  CLUS_4                0                  3
  CLUS_5                1                  3
  CLUS_6                3                  1
  CLUS_7                4                  2
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        3     10     13     16
  16P GAIN WILD-TYPE     21      3      4      7
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2               10                  3
  CLUS_3               13                  4
  CLUS_4               16                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        4     20      0     18
  16P GAIN WILD-TYPE     19      3      7      6
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2               20                  3
  CLUS_3                0                  7
  CLUS_4               18                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       17      6     19
  16P GAIN WILD-TYPE     19     10      7
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 19
  CLUS_2                6                 10
  CLUS_3               19                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       12     16      6      5      3
  16P GAIN WILD-TYPE      4     11      5     15      1
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                  4
  CLUS_2               16                 11
  CLUS_3                6                  5
  CLUS_4                5                 15
  CLUS_5                3                  1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       15      7     19
  16P GAIN WILD-TYPE     13     15      8
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               15                 13
  CLUS_2                7                 15
  CLUS_3               19                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       18     16      7
  16P GAIN WILD-TYPE     21      8      7
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               18                 21
  CLUS_2               16                  8
  CLUS_3                7                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        5     25     11      6
  16Q GAIN WILD-TYPE     31      1      5      6
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 31
  CLUS_2               25                  1
  CLUS_3               11                  5
  CLUS_4                6                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        4      5     16     11      6
  16Q GAIN WILD-TYPE     14      6      4      7      5
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                5                  6
  CLUS_3               16                  4
  CLUS_4               11                  7
  CLUS_5                6                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V3, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED   13 12
  16Q GAIN WILD-TYPE 10 10
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     13   12
  16Q GAIN WILD-TYPE   10   10
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               13                 10
  CLUS_2               12                 10
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q GAIN MUTATED        4      6      4      0      2      3      4      2
  16Q GAIN WILD-TYPE      4      1      3      3      2      1      2      4
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                6                  1
  CLUS_3                4                  3
  CLUS_4                0                  3
  CLUS_5                2                  2
  CLUS_6                3                  1
  CLUS_7                4                  2
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        4      9     13     16
  16Q GAIN WILD-TYPE     20      4      4      7
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                9                  4
  CLUS_3               13                  4
  CLUS_4               16                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        4     19      1     18
  16Q GAIN WILD-TYPE     19      4      6      6
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2               19                  4
  CLUS_3                1                  6
  CLUS_4               18                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       18      5     19
  16Q GAIN WILD-TYPE     18     11      7
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               18                 18
  CLUS_2                5                 11
  CLUS_3               19                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED       13     16      6      5      2
  16Q GAIN WILD-TYPE      3     11      5     15      2
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               13                  3
  CLUS_2               16                 11
  CLUS_3                6                  5
  CLUS_4                5                 15
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       17      6     18
  16Q GAIN WILD-TYPE     11     16      9
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               17                 11
  CLUS_2                6                 16
  CLUS_3               18                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       18     15      8
  16Q GAIN WILD-TYPE     21      9      6
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               18                 21
  CLUS_2               15                  9
  CLUS_3                8                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        3      0      0      2
  17P GAIN WILD-TYPE     33     26     16     10
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 33
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                2                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      1      0      1      1
  17P GAIN WILD-TYPE     18     10     20     17     10
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                 10
  CLUS_3                0                 20
  CLUS_4                1                 17
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V3, binary
                    cls
clus                  0  1
  17P GAIN MUTATED    0  2
  17P GAIN WILD-TYPE 23 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0    2
  17P GAIN WILD-TYPE   23   20
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17P GAIN MUTATED        0      0      0      0      1      1      0      0
  17P GAIN WILD-TYPE      8      7      7      3      3      3      6      6
D30V4, multiclass
[1] "Remove cluster labels:" "17P GAIN MUTATED"      
clus
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 2                 43 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JR         TCGA-OR-A5JS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K3         TCGA-OR-A5K4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KU         TCGA-OR-A5KW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LG         TCGA-OR-A5LH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LS         TCGA-OU-A5PI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-PK-A5HA 
"17P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1      0      0      2
  17P GAIN WILD-TYPE     23     13     17     21
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        0      0      1      2
  17P GAIN WILD-TYPE     23     23      6     22
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                0                 23
  CLUS_3                1                  6
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      1      2
  17P GAIN WILD-TYPE     36     15     24
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 36
  CLUS_2                1                 15
  CLUS_3                2                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      1      1      1      0
  17P GAIN WILD-TYPE     16     26     10     19      4
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                1                 26
  CLUS_3                1                 10
  CLUS_4                1                 19
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      0      3
  17P GAIN WILD-TYPE     28     22     24
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 28
  CLUS_2                0                 22
  CLUS_3                3                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      1      2
  17P GAIN WILD-TYPE     39     23     12
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                1                 23
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        4      0      0      3
  17Q GAIN WILD-TYPE     32     26     16      9
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                3                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        0      1      0      1      1
  17Q GAIN WILD-TYPE     18     10     20     17     10
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                 10
  CLUS_3                0                 20
  CLUS_4                1                 17
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V3, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED    0  2
  17Q GAIN WILD-TYPE 23 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      0    2
  17Q GAIN WILD-TYPE   23   20
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17Q GAIN MUTATED        0      0      0      0      1      1      0      0
  17Q GAIN WILD-TYPE      8      7      7      3      3      3      6      6
D31V4, multiclass
[1] "Remove cluster labels:" "17Q GAIN MUTATED"      
clus
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 2                 43 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JR         TCGA-OR-A5JS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K3         TCGA-OR-A5K4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KU         TCGA-OR-A5KW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LG         TCGA-OR-A5LH 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LS         TCGA-OU-A5PI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA 
"17Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        1      0      0      2
  17Q GAIN WILD-TYPE     23     13     17     21
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        0      0      1      2
  17Q GAIN WILD-TYPE     23     23      6     22
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                0                 23
  CLUS_3                1                  6
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      1      2
  17Q GAIN WILD-TYPE     36     15     24
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 36
  CLUS_2                1                 15
  CLUS_3                2                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        0      1      1      1      0
  17Q GAIN WILD-TYPE     16     26     10     19      4
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                1                 26
  CLUS_3                1                 10
  CLUS_4                1                 19
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      0      3
  17Q GAIN WILD-TYPE     28     22     24
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 28
  CLUS_2                0                 22
  CLUS_3                3                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      1      2
  17Q GAIN WILD-TYPE     39     23     12
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                1                 23
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        5      1      0      0
  18P GAIN WILD-TYPE     31     25     16     12
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                1                 25
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      0      0      1      0
  18P GAIN WILD-TYPE     17     11     20     17     11
D32V2, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
D32V3, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    0  2
  18P GAIN WILD-TYPE 23 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      0    2
  18P GAIN WILD-TYPE   23   20
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P GAIN MUTATED        1      0      0      0      1      0      0      0
  18P GAIN WILD-TYPE      7      7      7      3      3      4      6      6
D32V4, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 43 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JR         TCGA-OR-A5JS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KU         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        2      0      0      0
  18P GAIN WILD-TYPE     22     13     17     23
D32V5, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JA         TCGA-OR-A5JB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      0      1      0
  18P GAIN WILD-TYPE     22     23      6     24
D32V6, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JA         TCGA-OR-A5JB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      1      0
  18P GAIN WILD-TYPE     35     15     26
D32V7, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        0      0      0      2      0
  18P GAIN WILD-TYPE     16     27     11     18      4
D32V8, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0      1      1
  18P GAIN WILD-TYPE     28     21     26
D32V9, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      0      1
  18P GAIN WILD-TYPE     38     24     13
D32V10, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        4      1      0      0
  18Q GAIN WILD-TYPE     32     25     16     12
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                1                 25
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        1      0      0      0      0
  18Q GAIN WILD-TYPE     17     11     20     18     11
D33V2, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
D33V3, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    0  1
  18Q GAIN WILD-TYPE 23 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      0    1
  18Q GAIN WILD-TYPE   23   21
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                1                 21
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q GAIN MUTATED        1      0      0      0      0      0      0      0
  18Q GAIN WILD-TYPE      7      7      7      3      4      4      6      6
D33V4, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 44 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JP         TCGA-OR-A5JR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5KO         TCGA-OR-A5KU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      0      0      0
  18Q GAIN WILD-TYPE     23     13     17     23
D33V5, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      0      0      0
  18Q GAIN WILD-TYPE     22     23      7     24
D33V6, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      0
  18Q GAIN WILD-TYPE     35     16     26
D33V7, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        0      0      0      1      0
  18Q GAIN WILD-TYPE     16     27     11     19      4
D33V8, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      1      0
  18Q GAIN WILD-TYPE     28     21     27
D33V9, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      0
  18Q GAIN WILD-TYPE     38     24     14
D33V10, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" 

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       16     16     15      9
  19P GAIN WILD-TYPE     20     10      1      3
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               16                 20
  CLUS_2               16                 10
  CLUS_3               15                  1
  CLUS_4                9                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       13      8     16      7      5
  19P GAIN WILD-TYPE      5      3      4     11      6
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                  5
  CLUS_2                8                  3
  CLUS_3               16                  4
  CLUS_4                7                 11
  CLUS_5                5                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V3, binary
                    cls
clus                  0  1
  19P GAIN MUTATED   13 18
  19P GAIN WILD-TYPE 10  4
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     13   18
  19P GAIN WILD-TYPE   10    4
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                 10
  CLUS_2               18                  4
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19P GAIN MUTATED        8      7      4      2      1      3      4      2
  19P GAIN WILD-TYPE      0      0      3      1      3      1      2      4
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                  0
  CLUS_2                7                  0
  CLUS_3                4                  3
  CLUS_4                2                  1
  CLUS_5                1                  3
  CLUS_6                3                  1
  CLUS_7                4                  2
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       11     13     13     11
  19P GAIN WILD-TYPE     13      0      4     12
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               13                  0
  CLUS_3               13                  4
  CLUS_4               11                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       14     21      1     12
  19P GAIN WILD-TYPE      9      2      6     12
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               14                  9
  CLUS_2               21                  2
  CLUS_3                1                  6
  CLUS_4               12                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       25     10     14
  19P GAIN WILD-TYPE     11      6     12
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               25                 11
  CLUS_2               10                  6
  CLUS_3               14                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       13     15      6     12      3
  19P GAIN WILD-TYPE      3     12      5      8      1
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                  3
  CLUS_2               15                 12
  CLUS_3                6                  5
  CLUS_4               12                  8
  CLUS_5                3                  1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       19     14     15
  19P GAIN WILD-TYPE      9      8     12
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               19                  9
  CLUS_2               14                  8
  CLUS_3               15                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       27     15      6
  19P GAIN WILD-TYPE     12      9      8
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               27                 12
  CLUS_2               15                  9
  CLUS_3                6                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       13     16     16      7
  19Q GAIN WILD-TYPE     23     10      0      5
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 23
  CLUS_2               16                 10
  CLUS_3               16                  0
  CLUS_4                7                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       12      6     16      7      4
  19Q GAIN WILD-TYPE      6      5      4     11      7
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               12                  6
  CLUS_2                6                  5
  CLUS_3               16                  4
  CLUS_4                7                 11
  CLUS_5                4                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V3, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED   13 15
  19Q GAIN WILD-TYPE 10  7
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     13   15
  19Q GAIN WILD-TYPE   10    7
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 10
  CLUS_2               15                  7
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q GAIN MUTATED        7      6      4      3      1      2      4      1
  19Q GAIN WILD-TYPE      1      1      3      0      3      2      2      5
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                  1
  CLUS_2                6                  1
  CLUS_3                4                  3
  CLUS_4                3                  0
  CLUS_5                1                  3
  CLUS_6                2                  2
  CLUS_7                4                  2
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       10     13     12      9
  19Q GAIN WILD-TYPE     14      0      5     14
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                 14
  CLUS_2               13                  0
  CLUS_3               12                  5
  CLUS_4                9                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       12     20      1     11
  19Q GAIN WILD-TYPE     11      3      6     13
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               12                 11
  CLUS_2               20                  3
  CLUS_3                1                  6
  CLUS_4               11                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       25      8     12
  19Q GAIN WILD-TYPE     11      8     14
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               25                 11
  CLUS_2                8                  8
  CLUS_3               12                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       13     13      4     13      2
  19Q GAIN WILD-TYPE      3     14      7      7      2
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                  3
  CLUS_2               13                 14
  CLUS_3                4                  7
  CLUS_4               13                  7
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       18     13     13
  19Q GAIN WILD-TYPE     10      9     14
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               18                 10
  CLUS_2               13                  9
  CLUS_3               13                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       26     13      5
  19Q GAIN WILD-TYPE     13     11      9
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               26                 13
  CLUS_2               13                 11
  CLUS_3                5                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        6     22     11      7
  20P GAIN WILD-TYPE     30      4      5      5
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 30
  CLUS_2               22                  4
  CLUS_3               11                  5
  CLUS_4                7                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        6      4     12     12      6
  20P GAIN WILD-TYPE     12      7      8      6      5
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                4                  7
  CLUS_3               12                  8
  CLUS_4               12                  6
  CLUS_5                6                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V3, binary
                    cls
clus                  0  1
  20P GAIN MUTATED   17  6
  20P GAIN WILD-TYPE  6 16
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     17    6
  20P GAIN WILD-TYPE    6   16
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               17                  6
  CLUS_2                6                 16
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P GAIN MUTATED        5      2      6      1      1      4      4      0
  20P GAIN WILD-TYPE      3      5      1      2      3      0      2      6
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                2                  5
  CLUS_3                6                  1
  CLUS_4                1                  2
  CLUS_5                1                  3
  CLUS_6                4                  0
  CLUS_7                4                  2
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4      9      8     18
  20P GAIN WILD-TYPE     20      4      9      5
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                9                  4
  CLUS_3                8                  9
  CLUS_4               18                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        6     12      1     20
  20P GAIN WILD-TYPE     17     11      6      4
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 17
  CLUS_2               12                 11
  CLUS_3                1                  6
  CLUS_4               20                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       13      7     20
  20P GAIN WILD-TYPE     23      9      6
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 23
  CLUS_2                7                  9
  CLUS_3               20                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        8     18      7      6      1
  20P GAIN WILD-TYPE      8      9      4     14      3
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                  8
  CLUS_2               18                  9
  CLUS_3                7                  4
  CLUS_4                6                 14
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       10      9     20
  20P GAIN WILD-TYPE     18     13      7
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                 18
  CLUS_2                9                 13
  CLUS_3               20                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       13     18      8
  20P GAIN WILD-TYPE     26      6      6
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 26
  CLUS_2               18                  6
  CLUS_3                8                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        8     22     12      7
  20Q GAIN WILD-TYPE     28      4      4      5
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                8                 28
  CLUS_2               22                  4
  CLUS_3               12                  4
  CLUS_4                7                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        6      4     14     13      6
  20Q GAIN WILD-TYPE     12      7      6      5      5
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                4                  7
  CLUS_3               14                  6
  CLUS_4               13                  5
  CLUS_5                6                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V3, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   17  8
  20Q GAIN WILD-TYPE  6 14
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     17    8
  20Q GAIN WILD-TYPE    6   14
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               17                  6
  CLUS_2                8                 14
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q GAIN MUTATED        5      2      6      1      2      4      4      1
  20Q GAIN WILD-TYPE      3      5      1      2      2      0      2      5
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                2                  5
  CLUS_3                6                  1
  CLUS_4                1                  2
  CLUS_5                2                  2
  CLUS_6                4                  0
  CLUS_7                4                  2
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        5     11      8     18
  20Q GAIN WILD-TYPE     19      2      9      5
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2               11                  2
  CLUS_3                8                  9
  CLUS_4               18                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        6     14      2     20
  20Q GAIN WILD-TYPE     17      9      5      4
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 17
  CLUS_2               14                  9
  CLUS_3                2                  5
  CLUS_4               20                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       15      8     20
  20Q GAIN WILD-TYPE     21      8      6
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               15                 21
  CLUS_2                8                  8
  CLUS_3               20                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        9     18      7      7      2
  20Q GAIN WILD-TYPE      7      9      4     13      2
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                  7
  CLUS_2               18                  9
  CLUS_3                7                  4
  CLUS_4                7                 13
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       12      9     21
  20Q GAIN WILD-TYPE     16     13      6
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               12                 16
  CLUS_2                9                 13
  CLUS_3               21                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       15     18      9
  20Q GAIN WILD-TYPE     24      6      5
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               15                 24
  CLUS_2               18                  6
  CLUS_3                9                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        9      8     11      3
  21Q GAIN WILD-TYPE     27     18      5      9
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                9                 27
  CLUS_2                8                 18
  CLUS_3               11                  5
  CLUS_4                3                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        8      2     12      2      2
  21Q GAIN WILD-TYPE     10      9      8     16      9
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 10
  CLUS_2                2                  9
  CLUS_3               12                  8
  CLUS_4                2                 16
  CLUS_5                2                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V3, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    5  9
  21Q GAIN WILD-TYPE 18 13
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      5    9
  21Q GAIN WILD-TYPE   18   13
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                9                 13
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q GAIN MUTATED        5      3      1      2      1      0      1      1
  21Q GAIN WILD-TYPE      3      4      6      1      3      4      5      5
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                3                  4
  CLUS_3                1                  6
  CLUS_4                2                  1
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                1                  5
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        7      9      6      4
  21Q GAIN WILD-TYPE     17      4     11     19
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                9                  4
  CLUS_3                6                 11
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        7     15      1      3
  21Q GAIN WILD-TYPE     16      8      6     21
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 16
  CLUS_2               15                  8
  CLUS_3                1                  6
  CLUS_4                3                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       18      4      4
  21Q GAIN WILD-TYPE     18     12     22
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                 18
  CLUS_2                4                 12
  CLUS_3                4                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED       10      4      4      6      2
  21Q GAIN WILD-TYPE      6     23      7     14      2
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                  6
  CLUS_2                4                 23
  CLUS_3                4                  7
  CLUS_4                6                 14
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       15      7      3
  21Q GAIN WILD-TYPE     13     15     24
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 13
  CLUS_2                7                 15
  CLUS_3                3                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       17      4      4
  21Q GAIN WILD-TYPE     22     20     10
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               17                 22
  CLUS_2                4                 20
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        1      1      0      1
  22Q GAIN WILD-TYPE     35     25     16     11
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                1                 25
  CLUS_3                0                 16
  CLUS_4                1                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        0      0      1      0      1
  22Q GAIN WILD-TYPE     18     11     19     18     10
D39V2, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
D39V3, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    1  0
  22Q GAIN WILD-TYPE 22 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1    0
  22Q GAIN WILD-TYPE   22   22
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                0                 22
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q GAIN MUTATED        0      0      0      0      0      0      1      0
  22Q GAIN WILD-TYPE      8      7      7      3      4      4      5      6
D39V4, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 1                 44 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JP         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5KO         TCGA-OR-A5KU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5LD         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      1      1      0
  22Q GAIN WILD-TYPE     24     12     16     23
D39V5, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JK         TCGA-OR-A5JL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      1      0      1
  22Q GAIN WILD-TYPE     23     22      7     23
D39V6, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JK         TCGA-OR-A5JL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      0      1
  22Q GAIN WILD-TYPE     35     16     25
D39V7, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      1      0      0      0
  22Q GAIN WILD-TYPE     15     26     11     20      4
D39V8, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      0      1
  22Q GAIN WILD-TYPE     27     22     26
D39V9, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      1      0
  22Q GAIN WILD-TYPE     38     23     14
D39V10, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 

Clustering(40) Variable = XP GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        6     22      9      5
  XP GAIN WILD-TYPE     30      4      7      7
D40V1, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               6                30
  CLUS_2              22                 4
  CLUS_3               9                 7
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        5      7      9     10      7
  XP GAIN WILD-TYPE     13      4     11      8      4
D40V2, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2               7                 4
  CLUS_3               9                11
  CLUS_4              10                 8
  CLUS_5               7                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V3, binary
                   cls
clus                 0  1
  XP GAIN MUTATED   13 12
  XP GAIN WILD-TYPE 10 10
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XP GAIN MUTATED     13   12
  XP GAIN WILD-TYPE   10   10
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              13                10
  CLUS_2              12                10
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XP GAIN MUTATED        6      5      5      0      2      3      4      0
  XP GAIN WILD-TYPE      2      2      2      3      2      1      2      6
D40V4, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               6                 2
  CLUS_2               5                 2
  CLUS_3               5                 2
  CLUS_4               0                 3
  CLUS_5               2                 2
  CLUS_6               3                 1
  CLUS_7               4                 2
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        4     10     11     12
  XP GAIN WILD-TYPE     20      3      6     11
D40V5, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2              10                 3
  CLUS_3              11                 6
  CLUS_4              12                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        5     14      2     16
  XP GAIN WILD-TYPE     18      9      5      8
D40V6, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              14                 9
  CLUS_3               2                 5
  CLUS_4              16                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       17      8     13
  XP GAIN WILD-TYPE     19      8     13
D40V7, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              17                19
  CLUS_2               8                 8
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED       10     15      7      5      1
  XP GAIN WILD-TYPE      6     12      4     15      3
D40V8, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              10                 6
  CLUS_2              15                12
  CLUS_3               7                 4
  CLUS_4               5                15
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       15      8     14
  XP GAIN WILD-TYPE     13     14     13
D40V9, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              15                13
  CLUS_2               8                14
  CLUS_3              14                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       17     15      5
  XP GAIN WILD-TYPE     22      9      9
D40V10, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              17                22
  CLUS_2              15                 9
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        7     21      8      5
  XQ GAIN WILD-TYPE     29      5      8      7
D41V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7                29
  CLUS_2              21                 5
  CLUS_3               8                 8
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        4      6      9     10      7
  XQ GAIN WILD-TYPE     14      5     11      8      4
D41V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                14
  CLUS_2               6                 5
  CLUS_3               9                11
  CLUS_4              10                 8
  CLUS_5               7                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V3, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED   13 11
  XQ GAIN WILD-TYPE 10 11
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     13   11
  XQ GAIN WILD-TYPE   10   11
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              13                10
  CLUS_2              11                11
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ GAIN MUTATED        6      4      5      0      2      3      4      0
  XQ GAIN WILD-TYPE      2      3      2      3      2      1      2      6
D41V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6                 2
  CLUS_2               4                 3
  CLUS_3               5                 2
  CLUS_4               0                 3
  CLUS_5               2                 2
  CLUS_6               3                 1
  CLUS_7               4                 2
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        4     10     10     12
  XQ GAIN WILD-TYPE     20      3      7     11
D41V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2              10                 3
  CLUS_3              10                 7
  CLUS_4              12                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        5     13      2     16
  XQ GAIN WILD-TYPE     18     10      5      8
D41V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              13                10
  CLUS_3               2                 5
  CLUS_4              16                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       15      8     13
  XQ GAIN WILD-TYPE     21      8     13
D41V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15                21
  CLUS_2               8                 8
  CLUS_3              13                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        8     15      7      5      1
  XQ GAIN WILD-TYPE      8     12      4     15      3
D41V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                 8
  CLUS_2              15                12
  CLUS_3               7                 4
  CLUS_4               5                15
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       14      7     14
  XQ GAIN WILD-TYPE     14     15     13
D41V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              14                14
  CLUS_2               7                15
  CLUS_3              14                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       15     15      5
  XQ GAIN WILD-TYPE     24      9      9
D41V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15                24
  CLUS_2              15                 9
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       13      4      6      6
  1P LOSS WILD-TYPE     23     22     10      6
D42V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                23
  CLUS_2               4                22
  CLUS_3               6                10
  CLUS_4               6                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        8      3      9      2      4
  1P LOSS WILD-TYPE     10      8     11     16      7
D42V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                10
  CLUS_2               3                 8
  CLUS_3               9                11
  CLUS_4               2                16
  CLUS_5               4                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V3, binary
                   cls
clus                 0  1
  1P LOSS MUTATED    8  8
  1P LOSS WILD-TYPE 15 14
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      8    8
  1P LOSS WILD-TYPE   15   14
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               8                14
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1P LOSS MUTATED        2      1      1      2      1      1      3      5
  1P LOSS WILD-TYPE      6      6      6      1      3      3      3      1
D42V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               2                 1
  CLUS_5               1                 3
  CLUS_6               1                 3
  CLUS_7               3                 3
  CLUS_8               5                 1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       11      3      4      8
  1P LOSS WILD-TYPE     13     10     13     15
D42V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2               3                10
  CLUS_3               4                13
  CLUS_4               8                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       12      7      0      7
  1P LOSS WILD-TYPE     11     16      7     17
D42V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                11
  CLUS_2               7                16
  CLUS_3               0                 7
  CLUS_4               7                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       11      4     11
  1P LOSS WILD-TYPE     25     12     15
D42V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                25
  CLUS_2               4                12
  CLUS_3              11                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        5      9      2      7      3
  1P LOSS WILD-TYPE     11     18      9     13      1
D42V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                11
  CLUS_2               9                18
  CLUS_3               2                 9
  CLUS_4               7                13
  CLUS_5               3                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        4     10     11
  1P LOSS WILD-TYPE     24     12     16
D42V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                24
  CLUS_2              10                12
  CLUS_3              11                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       12      8      5
  1P LOSS WILD-TYPE     27     16      9
D42V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                27
  CLUS_2               8                16
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        6      4      5      5
  1Q LOSS WILD-TYPE     30     22     11      7
D43V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               4                22
  CLUS_3               5                11
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        6      0      7      2      2
  1Q LOSS WILD-TYPE     12     11     13     16      9
D43V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                12
  CLUS_2               0                11
  CLUS_3               7                13
  CLUS_4               2                16
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V3, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED    4  3
  1Q LOSS WILD-TYPE 19 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      4    3
  1Q LOSS WILD-TYPE   19   19
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1Q LOSS MUTATED        0      0      0      2      1      0      2      2
  1Q LOSS WILD-TYPE      8      7      7      1      3      4      4      4
D43V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 7
  CLUS_3               0                 7
  CLUS_4               2                 1
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               2                 4
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        6      2      4      5
  1Q LOSS WILD-TYPE     18     11     13     18
D43V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               2                11
  CLUS_3               4                13
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        6      6      0      5
  1Q LOSS WILD-TYPE     17     17      7     19
D43V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               6                17
  CLUS_3               0                 7
  CLUS_4               5                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      2      8
  1Q LOSS WILD-TYPE     29     14     18
D43V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               2                14
  CLUS_3               8                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        4      7      1      4      1
  1Q LOSS WILD-TYPE     12     20     10     16      3
D43V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2               7                20
  CLUS_3               1                10
  CLUS_4               4                16
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        2      6      8
  1Q LOSS WILD-TYPE     26     16     19
D43V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                26
  CLUS_2               6                16
  CLUS_3               8                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        6      6      4
  1Q LOSS WILD-TYPE     33     18     10
D43V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               6                18
  CLUS_3               4                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        4      2      5      6
  2P LOSS WILD-TYPE     32     24     11      6
D44V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                32
  CLUS_2               2                24
  CLUS_3               5                11
  CLUS_4               6                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      1      7      2      5
  2P LOSS WILD-TYPE     17     10     13     16      6
D44V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                10
  CLUS_3               7                13
  CLUS_4               2                16
  CLUS_5               5                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V3, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    6  4
  2P LOSS WILD-TYPE 17 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      6    4
  2P LOSS WILD-TYPE   17   18
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               4                18
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2P LOSS MUTATED        1      1      1      1      0      1      2      3
  2P LOSS WILD-TYPE      7      6      6      2      4      3      4      3
D44V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               1                 2
  CLUS_5               0                 4
  CLUS_6               1                 3
  CLUS_7               2                 4
  CLUS_8               3                 3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      3      5      5
  2P LOSS WILD-TYPE     21     10     12     18
D44V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                10
  CLUS_3               5                12
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      7      0      6
  2P LOSS WILD-TYPE     20     16      7     18
D44V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               7                16
  CLUS_3               0                 7
  CLUS_4               6                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        8      0      8
  2P LOSS WILD-TYPE     28     16     18
D44V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8                28
  CLUS_2               0                16
  CLUS_3               8                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        5      5      2      3      1
  2P LOSS WILD-TYPE     11     22      9     17      3
D44V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                11
  CLUS_2               5                22
  CLUS_3               2                 9
  CLUS_4               3                17
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        6      2      8
  2P LOSS WILD-TYPE     22     20     19
D44V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6                22
  CLUS_2               2                20
  CLUS_3               8                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        8      4      4
  2P LOSS WILD-TYPE     31     20     10
D44V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8                31
  CLUS_2               4                20
  CLUS_3               4                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        3      2      4      6
  2Q LOSS WILD-TYPE     33     24     12      6
D45V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                33
  CLUS_2               2                24
  CLUS_3               4                12
  CLUS_4               6                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        0      0      7      2      5
  2Q LOSS WILD-TYPE     18     11     13     16      6
D45V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                11
  CLUS_3               7                13
  CLUS_4               2                16
  CLUS_5               5                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V3, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    4  4
  2Q LOSS WILD-TYPE 19 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      4    4
  2Q LOSS WILD-TYPE   19   18
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               4                18
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2Q LOSS MUTATED        1      1      1      0      0      1      2      2
  2Q LOSS WILD-TYPE      7      6      6      3      4      3      4      4
D45V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               0                 3
  CLUS_5               0                 4
  CLUS_6               1                 3
  CLUS_7               2                 4
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        1      3      5      5
  2Q LOSS WILD-TYPE     23     10     12     18
D45V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                10
  CLUS_3               5                12
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        1      7      0      6
  2Q LOSS WILD-TYPE     22     16      7     18
D45V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                22
  CLUS_2               7                16
  CLUS_3               0                 7
  CLUS_4               6                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6      0      8
  2Q LOSS WILD-TYPE     30     16     18
D45V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               0                16
  CLUS_3               8                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        4      5      2      2      1
  2Q LOSS WILD-TYPE     12     22      9     18      3
D45V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2               5                22
  CLUS_3               2                 9
  CLUS_4               2                18
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5      1      8
  2Q LOSS WILD-TYPE     23     21     19
D45V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                23
  CLUS_2               1                21
  CLUS_3               8                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6      4      4
  2Q LOSS WILD-TYPE     33     20     10
D45V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               4                20
  CLUS_3               4                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        8      3      6      3
  3P LOSS WILD-TYPE     28     23     10      9
D46V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8                28
  CLUS_2               3                23
  CLUS_3               6                10
  CLUS_4               3                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        5      1      8      2      1
  3P LOSS WILD-TYPE     13     10     12     16     10
D46V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               1                10
  CLUS_3               8                12
  CLUS_4               2                16
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V3, binary
                   cls
clus                 0  1
  3P LOSS MUTATED    3  5
  3P LOSS WILD-TYPE 20 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      3    5
  3P LOSS WILD-TYPE   20   17
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P LOSS MUTATED        1      1      0      2      1      0      1      2
  3P LOSS WILD-TYPE      7      6      7      1      3      4      5      4
D46V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               2                 1
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               1                 5
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        6      1      7      3
  3P LOSS WILD-TYPE     18     12     10     20
D46V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               1                12
  CLUS_3               7                10
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        6      8      1      2
  3P LOSS WILD-TYPE     17     15      6     22
D46V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               8                15
  CLUS_3               1                 6
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       10      3      4
  3P LOSS WILD-TYPE     26     13     22
D46V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10                26
  CLUS_2               3                13
  CLUS_3               4                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        4      4      1      7      1
  3P LOSS WILD-TYPE     12     23     10     13      3
D46V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2               4                23
  CLUS_3               1                10
  CLUS_4               7                13
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7      5      4
  3P LOSS WILD-TYPE     21     17     23
D46V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                21
  CLUS_2               5                17
  CLUS_3               4                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       11      3      2
  3P LOSS WILD-TYPE     28     21     12
D46V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11                28
  CLUS_2               3                21
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       10      2      5      3
  3Q LOSS WILD-TYPE     26     24     11      9
D47V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                26
  CLUS_2               2                24
  CLUS_3               5                11
  CLUS_4               3                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        7      1      6      2      1
  3Q LOSS WILD-TYPE     11     10     14     16     10
D47V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                11
  CLUS_2               1                10
  CLUS_3               6                14
  CLUS_4               2                16
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V3, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    3  6
  3Q LOSS WILD-TYPE 20 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      3    6
  3Q LOSS WILD-TYPE   20   16
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               6                16
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q LOSS MUTATED        1      1      1      2      1      0      1      2
  3Q LOSS WILD-TYPE      7      6      6      1      3      4      5      4
D47V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               2                 1
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               1                 5
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        7      0      7      3
  3Q LOSS WILD-TYPE     17     13     10     20
D47V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               0                13
  CLUS_3               7                10
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        8      7      1      1
  3Q LOSS WILD-TYPE     15     16      6     23
D47V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               7                16
  CLUS_3               1                 6
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       11      3      3
  3Q LOSS WILD-TYPE     25     13     23
D47V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                25
  CLUS_2               3                13
  CLUS_3               3                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        4      3      2      7      1
  3Q LOSS WILD-TYPE     12     24      9     13      3
D47V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2               3                24
  CLUS_3               2                 9
  CLUS_4               7                13
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        7      6      3
  3Q LOSS WILD-TYPE     21     16     24
D47V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                21
  CLUS_2               6                16
  CLUS_3               3                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       12      3      1
  3Q LOSS WILD-TYPE     27     21     13
D47V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              12                27
  CLUS_2               3                21
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        7      1      0      2
  4P LOSS WILD-TYPE     29     25     16     10
D48V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               1                25
  CLUS_3               0                16
  CLUS_4               2                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        5      1      1      1      1
  4P LOSS WILD-TYPE     13     10     19     17     10
D48V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               1                10
  CLUS_3               1                19
  CLUS_4               1                17
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V3, binary
                   cls
clus                 0  1
  4P LOSS MUTATED    2  3
  4P LOSS WILD-TYPE 21 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      2    3
  4P LOSS WILD-TYPE   21   19
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4P LOSS MUTATED        1      1      1      0      1      0      1      0
  4P LOSS WILD-TYPE      7      6      6      3      3      4      5      6
D48V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               1                 5
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        7      0      1      1
  4P LOSS WILD-TYPE     17     13     16     22
D48V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        6      1      1      1
  4P LOSS WILD-TYPE     17     22      6     23
D48V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               1                22
  CLUS_3               1                 6
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      3      1
  4P LOSS WILD-TYPE     31     13     25
D48V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                31
  CLUS_2               3                13
  CLUS_3               1                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        1      4      1      3      0
  4P LOSS WILD-TYPE     15     23     10     17      4
D48V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                23
  CLUS_3               1                10
  CLUS_4               3                17
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        2      6      1
  4P LOSS WILD-TYPE     26     16     26
D48V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                26
  CLUS_2               6                16
  CLUS_3               1                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      3      1
  4P LOSS WILD-TYPE     34     21     13
D48V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                34
  CLUS_2               3                21
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        7      1      1      2
  4Q LOSS WILD-TYPE     29     25     15     10
D49V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               1                25
  CLUS_3               1                15
  CLUS_4               2                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        6      1      1      1      1
  4Q LOSS WILD-TYPE     12     10     19     17     10
D49V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                12
  CLUS_2               1                10
  CLUS_3               1                19
  CLUS_4               1                17
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V3, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED    2  4
  4Q LOSS WILD-TYPE 21 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      2    4
  4Q LOSS WILD-TYPE   21   18
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               4                18
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4Q LOSS MUTATED        1      1      1      1      1      0      1      0
  4Q LOSS WILD-TYPE      7      6      6      2      3      4      5      6
D49V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               1                 6
  CLUS_4               1                 2
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               1                 5
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        8      0      1      1
  4Q LOSS WILD-TYPE     16     13     16     22
D49V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        7      1      1      1
  4Q LOSS WILD-TYPE     16     22      6     23
D49V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               1                22
  CLUS_3               1                 6
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6      3      1
  4Q LOSS WILD-TYPE     30     13     25
D49V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               3                13
  CLUS_3               1                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        1      4      1      4      0
  4Q LOSS WILD-TYPE     15     23     10     16      4
D49V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                23
  CLUS_3               1                10
  CLUS_4               4                16
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        2      7      1
  4Q LOSS WILD-TYPE     26     15     26
D49V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               2                26
  CLUS_2               7                15
  CLUS_3               1                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6      3      1
  4Q LOSS WILD-TYPE     33     21     13
D49V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               3                21
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        6      1      1      0
  5P LOSS WILD-TYPE     30     25     15     12
D50V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               1                25
  CLUS_3               1                15
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      3      1      0      0
  5P LOSS WILD-TYPE     15      8     19     18     11
D50V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               3                 8
  CLUS_3               1                19
  CLUS_4               0                18
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V3, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    3  1
  5P LOSS WILD-TYPE 20 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3    1
  5P LOSS WILD-TYPE   20   21
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               1                21
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P LOSS MUTATED        1      0      0      1      0      0      0      2
  5P LOSS WILD-TYPE      7      7      7      2      4      4      6      4
D50V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 7
  CLUS_3               0                 7
  CLUS_4               1                 2
  CLUS_5               0                 4
  CLUS_6               0                 4
  CLUS_7               0                 6
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        4      2      0      1
  5P LOSS WILD-TYPE     20     11     17     22
D50V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                11
  CLUS_3               0                17
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        6      1      0      0
  5P LOSS WILD-TYPE     17     22      7     24
D50V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               1                22
  CLUS_3               0                 7
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      2      2
  5P LOSS WILD-TYPE     33     14     24
D50V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                33
  CLUS_2               2                14
  CLUS_3               2                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      2      0      1      1
  5P LOSS WILD-TYPE     13     25     11     19      3
D50V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2               2                25
  CLUS_3               0                11
  CLUS_4               1                19
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      3      2
  5P LOSS WILD-TYPE     26     19     25
D50V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                26
  CLUS_2               3                19
  CLUS_3               2                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        4      2      1
  5P LOSS WILD-TYPE     35     22     13
D50V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                35
  CLUS_2               2                22
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      2      1      0
  5Q LOSS WILD-TYPE     32     24     15     12
D51V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                32
  CLUS_2               2                24
  CLUS_3               1                15
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        3      1      1      1      0
  5Q LOSS WILD-TYPE     15     10     19     17     11
D51V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               1                10
  CLUS_3               1                19
  CLUS_4               1                17
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V3, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    2  0
  5Q LOSS WILD-TYPE 21 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      2    0
  5Q LOSS WILD-TYPE   21   22
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               0                22
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q LOSS MUTATED        0      0      0      1      0      0      0      1
  5Q LOSS WILD-TYPE      8      7      7      2      4      4      6      5
D51V4, multiclass
[1] "Remove cluster labels:" "5Q LOSS MUTATED"       
clus
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                2                43 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J6        TCGA-OR-A5J7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5J8        TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JY        TCGA-OR-A5JZ        TCGA-OR-A5K0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5K1        TCGA-OR-A5K3        TCGA-OR-A5K4        TCGA-OR-A5K5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5K6        TCGA-OR-A5K8        TCGA-OR-A5KO        TCGA-OR-A5KU 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KY        TCGA-OR-A5KZ        TCGA-OR-A5LD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-P6-A5OG 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      1      0      1
  5Q LOSS WILD-TYPE     20     12     17     22
D51V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               1                12
  CLUS_3               0                17
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      2      0      0
  5Q LOSS WILD-TYPE     19     21      7     24
D51V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               2                21
  CLUS_3               0                 7
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      1
  5Q LOSS WILD-TYPE     32     15     25
D51V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                32
  CLUS_2               1                15
  CLUS_3               1                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        4      1      0      1      0
  5Q LOSS WILD-TYPE     12     26     11     19      4
D51V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2               1                26
  CLUS_3               0                11
  CLUS_4               1                19
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        3      2      1
  5Q LOSS WILD-TYPE     25     20     26
D51V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                25
  CLUS_2               2                20
  CLUS_3               1                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      1
  5Q LOSS WILD-TYPE     35     23     13
D51V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                35
  CLUS_2               1                23
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       10      2      3      4
  6P LOSS WILD-TYPE     26     24     13      8
D52V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                26
  CLUS_2               2                24
  CLUS_3               3                13
  CLUS_4               4                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        5      2      3      3      3
  6P LOSS WILD-TYPE     13      9     17     15      8
D52V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               2                 9
  CLUS_3               3                17
  CLUS_4               3                15
  CLUS_5               3                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V3, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    4  5
  6P LOSS WILD-TYPE 19 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      4    5
  6P LOSS WILD-TYPE   19   17
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6P LOSS MUTATED        1      0      0      1      2      1      2      2
  6P LOSS WILD-TYPE      7      7      7      2      2      3      4      4
D52V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 7
  CLUS_3               0                 7
  CLUS_4               1                 2
  CLUS_5               2                 2
  CLUS_6               1                 3
  CLUS_7               2                 4
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        7      2      2      5
  6P LOSS WILD-TYPE     17     11     15     18
D52V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               2                11
  CLUS_3               2                15
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        7      4      1      4
  6P LOSS WILD-TYPE     16     19      6     20
D52V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               4                19
  CLUS_3               1                 6
  CLUS_4               4                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        9      2      5
  6P LOSS WILD-TYPE     27     14     21
D52V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9                27
  CLUS_2               2                14
  CLUS_3               5                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        1      5      1      7      2
  6P LOSS WILD-TYPE     15     22     10     13      2
D52V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               5                22
  CLUS_3               1                10
  CLUS_4               7                13
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        5      6      5
  6P LOSS WILD-TYPE     23     16     22
D52V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               5                23
  CLUS_2               6                16
  CLUS_3               5                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       10      3      3
  6P LOSS WILD-TYPE     29     21     11
D52V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                29
  CLUS_2               3                21
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       11      2      4      5
  6Q LOSS WILD-TYPE     25     24     12      7
D53V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              11                25
  CLUS_2               2                24
  CLUS_3               4                12
  CLUS_4               5                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        5      3      3      4      3
  6Q LOSS WILD-TYPE     13      8     17     14      8
D53V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               3                 8
  CLUS_3               3                17
  CLUS_4               4                14
  CLUS_5               3                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V3, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED    4  7
  6Q LOSS WILD-TYPE 19 15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      4    7
  6Q LOSS WILD-TYPE   19   15
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               7                15
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6Q LOSS MUTATED        1      1      0      2      2      1      2      2
  6Q LOSS WILD-TYPE      7      6      7      1      2      3      4      4
D53V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               2                 1
  CLUS_5               2                 2
  CLUS_6               1                 3
  CLUS_7               2                 4
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        8      2      3      5
  6Q LOSS WILD-TYPE     16     11     14     18
D53V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               2                11
  CLUS_3               3                14
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        7      5      2      4
  6Q LOSS WILD-TYPE     16     18      5     20
D53V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               5                18
  CLUS_3               2                 5
  CLUS_4               4                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       10      3      5
  6Q LOSS WILD-TYPE     26     13     21
D53V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              10                26
  CLUS_2               3                13
  CLUS_3               5                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        1      6      2      7      2
  6Q LOSS WILD-TYPE     15     21      9     13      2
D53V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                21
  CLUS_3               2                 9
  CLUS_4               7                13
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        6      7      5
  6Q LOSS WILD-TYPE     22     15     22
D53V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               6                22
  CLUS_2               7                15
  CLUS_3               5                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       11      3      4
  6Q LOSS WILD-TYPE     28     21     10
D53V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              11                28
  CLUS_2               3                21
  CLUS_3               4                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        3      0      1      1
  7P LOSS WILD-TYPE     33     26     15     11
D54V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                33
  CLUS_2               0                26
  CLUS_3               1                15
  CLUS_4               1                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        2      1      1      0      0
  7P LOSS WILD-TYPE     16     10     19     18     11
D54V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               1                10
  CLUS_3               1                19
  CLUS_4               0                18
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V3, binary
                   cls
clus                 0  1
  7P LOSS MUTATED    0  3
  7P LOSS WILD-TYPE 23 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      0    3
  7P LOSS WILD-TYPE   23   19
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                23
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7P LOSS MUTATED        1      0      0      1      0      1      0      0
  7P LOSS WILD-TYPE      7      7      7      2      4      3      6      6
D54V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 7
  CLUS_3               0                 7
  CLUS_4               1                 2
  CLUS_5               0                 4
  CLUS_6               1                 3
  CLUS_7               0                 6
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        2      0      1      1
  7P LOSS WILD-TYPE     22     13     16     22
D54V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                22
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        2      1      0      1
  7P LOSS WILD-TYPE     21     22      7     23
D54V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               1                22
  CLUS_3               0                 7
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      0      2
  7P LOSS WILD-TYPE     34     16     24
D54V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                34
  CLUS_2               0                16
  CLUS_3               2                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        1      0      1      2      0
  7P LOSS WILD-TYPE     15     27     10     18      4
D54V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               0                27
  CLUS_3               1                10
  CLUS_4               2                18
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        1      1      2
  7P LOSS WILD-TYPE     27     21     25
D54V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                27
  CLUS_2               1                21
  CLUS_3               2                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      0      2
  7P LOSS WILD-TYPE     37     24     12
D54V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2               0                24
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        4      0      1      1
  7Q LOSS WILD-TYPE     32     26     15     11
D55V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                32
  CLUS_2               0                26
  CLUS_3               1                15
  CLUS_4               1                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        3      1      1      0      0
  7Q LOSS WILD-TYPE     15     10     19     18     11
D55V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               1                10
  CLUS_3               1                19
  CLUS_4               0                18
  CLUS_5               0                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V3, binary
                   cls
clus                 0  1
  7Q LOSS MUTATED    0  3
  7Q LOSS WILD-TYPE 23 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      0    3
  7Q LOSS WILD-TYPE   23   19
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                23
  CLUS_2               3                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7Q LOSS MUTATED        1      1      0      0      0      1      0      0
  7Q LOSS WILD-TYPE      7      6      7      3      4      3      6      6
D55V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               0                 3
  CLUS_5               0                 4
  CLUS_6               1                 3
  CLUS_7               0                 6
  CLUS_8               0                 6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        3      0      1      1
  7Q LOSS WILD-TYPE     21     13     16     22
D55V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        3      1      0      1
  7Q LOSS WILD-TYPE     20     22      7     23
D55V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               1                22
  CLUS_3               0                 7
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        2      1      2
  7Q LOSS WILD-TYPE     34     15     24
D55V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                34
  CLUS_2               1                15
  CLUS_3               2                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        1      0      1      3      0
  7Q LOSS WILD-TYPE     15     27     10     17      4
D55V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               0                27
  CLUS_3               1                10
  CLUS_4               3                17
  CLUS_5               0                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      2      2
  7Q LOSS WILD-TYPE     27     20     25
D55V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                27
  CLUS_2               2                20
  CLUS_3               2                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      0      2
  7Q LOSS WILD-TYPE     36     24     12
D55V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                36
  CLUS_2               0                24
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        8      0      6      2
  8P LOSS WILD-TYPE     28     26     10     10
D56V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                28
  CLUS_2               0                26
  CLUS_3               6                10
  CLUS_4               2                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        2      3      6      1      1
  8P LOSS WILD-TYPE     16      8     14     17     10
D56V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               3                 8
  CLUS_3               6                14
  CLUS_4               1                17
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V3, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    3  6
  8P LOSS WILD-TYPE 20 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      3    6
  8P LOSS WILD-TYPE   20   16
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               6                16
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P LOSS MUTATED        1      1      0      2      0      0      0      5
  8P LOSS WILD-TYPE      7      6      7      1      4      4      6      1
D56V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               2                 1
  CLUS_5               0                 4
  CLUS_6               0                 4
  CLUS_7               0                 6
  CLUS_8               5                 1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        5      2      5      1
  8P LOSS WILD-TYPE     19     11     12     22
D56V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               2                11
  CLUS_3               5                12
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        5      6      1      1
  8P LOSS WILD-TYPE     18     17      6     23
D56V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               6                17
  CLUS_3               1                 6
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        9      2      2
  8P LOSS WILD-TYPE     27     14     24
D56V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               9                27
  CLUS_2               2                14
  CLUS_3               2                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        2      2      1      5      3
  8P LOSS WILD-TYPE     14     25     10     15      1
D56V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                25
  CLUS_3               1                10
  CLUS_4               5                15
  CLUS_5               3                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        6      5      2
  8P LOSS WILD-TYPE     22     17     25
D56V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                22
  CLUS_2               5                17
  CLUS_3               2                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       11      1      1
  8P LOSS WILD-TYPE     28     23     13
D56V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              11                28
  CLUS_2               1                23
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        4      0      6      2
  8Q LOSS WILD-TYPE     32     26     10     10
D57V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                32
  CLUS_2               0                26
  CLUS_3               6                10
  CLUS_4               2                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        2      1      6      0      1
  8Q LOSS WILD-TYPE     16     10     14     18     10
D57V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               1                10
  CLUS_3               6                14
  CLUS_4               0                18
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V3, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    2  5
  8Q LOSS WILD-TYPE 21 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    5
  8Q LOSS WILD-TYPE   21   17
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q LOSS MUTATED        1      1      0      2      0      0      0      3
  8Q LOSS WILD-TYPE      7      6      7      1      4      4      6      3
D57V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               2                 1
  CLUS_5               0                 4
  CLUS_6               0                 4
  CLUS_7               0                 6
  CLUS_8               3                 3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      2      5      0
  8Q LOSS WILD-TYPE     21     11     12     23
D57V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               2                11
  CLUS_3               5                12
  CLUS_4               0                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      6      0      1
  8Q LOSS WILD-TYPE     20     17      7     23
D57V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               6                17
  CLUS_3               0                 7
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        8      1      1
  8Q LOSS WILD-TYPE     28     15     25
D57V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8                28
  CLUS_2               1                15
  CLUS_3               1                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        1      1      1      5      2
  8Q LOSS WILD-TYPE     15     26     10     15      2
D57V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                26
  CLUS_3               1                10
  CLUS_4               5                15
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        5      4      1
  8Q LOSS WILD-TYPE     23     18     26
D57V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                23
  CLUS_2               4                18
  CLUS_3               1                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        9      1      0
  8Q LOSS WILD-TYPE     30     23     14
D57V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9                30
  CLUS_2               1                23
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       15      2      3      0
  9P LOSS WILD-TYPE     21     24     13     12
D58V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              15                21
  CLUS_2               2                24
  CLUS_3               3                13
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        9      3      2      4      1
  9P LOSS WILD-TYPE      9      8     18     14     10
D58V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               9                 9
  CLUS_2               3                 8
  CLUS_3               2                18
  CLUS_4               4                14
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V3, binary
                   cls
clus                 0  1
  9P LOSS MUTATED    5  7
  9P LOSS WILD-TYPE 18 15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      5    7
  9P LOSS WILD-TYPE   18   15
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               7                15
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P LOSS MUTATED        2      1      0      1      3      0      3      2
  9P LOSS WILD-TYPE      6      6      7      2      1      4      3      4
D58V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               1                 2
  CLUS_5               3                 1
  CLUS_6               0                 4
  CLUS_7               3                 3
  CLUS_8               2                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       14      1      3      1
  9P LOSS WILD-TYPE     10     12     14     22
D58V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                10
  CLUS_2               1                12
  CLUS_3               3                14
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       12      4      2      1
  9P LOSS WILD-TYPE     11     19      5     23
D58V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              12                11
  CLUS_2               4                19
  CLUS_3               2                 5
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        9      8      2
  9P LOSS WILD-TYPE     27      8     24
D58V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               9                27
  CLUS_2               8                 8
  CLUS_3               2                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        4      6      0      8      1
  9P LOSS WILD-TYPE     12     21     11     12      3
D58V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2               6                21
  CLUS_3               0                11
  CLUS_4               8                12
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        4     11      3
  9P LOSS WILD-TYPE     24     11     24
D58V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                24
  CLUS_2              11                11
  CLUS_3               3                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       10      5      3
  9P LOSS WILD-TYPE     29     19     11
D58V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              10                29
  CLUS_2               5                19
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        7      2      2      0
  9Q LOSS WILD-TYPE     29     24     14     12
D59V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               2                24
  CLUS_3               2                14
  CLUS_4               0                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        2      2      2      3      1
  9Q LOSS WILD-TYPE     16      9     18     15     10
D59V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               2                 9
  CLUS_3               2                18
  CLUS_4               3                15
  CLUS_5               1                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V3, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    3  2
  9Q LOSS WILD-TYPE 20 20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3    2
  9Q LOSS WILD-TYPE   20   20
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               2                20
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q LOSS MUTATED        0      0      0      0      1      0      3      1
  9Q LOSS WILD-TYPE      8      7      7      3      3      4      3      5
D59V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 7
  CLUS_3               0                 7
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               3                 3
  CLUS_8               1                 5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        6      0      3      1
  9Q LOSS WILD-TYPE     18     13     14     22
D59V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                13
  CLUS_3               3                14
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        5      3      1      1
  9Q LOSS WILD-TYPE     18     20      6     23
D59V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               3                20
  CLUS_3               1                 6
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      3      2
  9Q LOSS WILD-TYPE     31     13     24
D59V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                31
  CLUS_2               3                13
  CLUS_3               2                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        3      3      0      3      1
  9Q LOSS WILD-TYPE     13     24     11     17      3
D59V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2               3                24
  CLUS_3               0                11
  CLUS_4               3                17
  CLUS_5               1                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        2      5      2
  9Q LOSS WILD-TYPE     26     17     25
D59V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                26
  CLUS_2               5                17
  CLUS_3               2                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      2      2
  9Q LOSS WILD-TYPE     34     22     12
D59V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                34
  CLUS_2               2                22
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        5      1      4      2
  10P LOSS WILD-TYPE     31     25     12     10
D60V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                1                 25
  CLUS_3                4                 12
  CLUS_4                2                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        3      0      4      1      2
  10P LOSS WILD-TYPE     15     11     16     17      9
D60V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                0                 11
  CLUS_3                4                 16
  CLUS_4                1                 17
  CLUS_5                2                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V3, binary
                    cls
clus                  0  1
  10P LOSS MUTATED    3  2
  10P LOSS WILD-TYPE 20 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      3    2
  10P LOSS WILD-TYPE   20   20
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P LOSS MUTATED        0      1      0      0      1      0      3      0
  10P LOSS WILD-TYPE      8      6      7      3      3      4      3      6
D60V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  6
  CLUS_3                0                  7
  CLUS_4                0                  3
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                3                  3
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        3      0      4      2
  10P LOSS WILD-TYPE     21     13     13     21
D60V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                4                 13
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        3      3      0      3
  10P LOSS WILD-TYPE     20     20      7     21
D60V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                3                 20
  CLUS_3                0                  7
  CLUS_4                3                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        6      1      3
  10P LOSS WILD-TYPE     30     15     23
D60V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 30
  CLUS_2                1                 15
  CLUS_3                3                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        3      4      0      3      0
  10P LOSS WILD-TYPE     13     23     11     17      4
D60V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                4                 23
  CLUS_3                0                 11
  CLUS_4                3                 17
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        3      3      3
  10P LOSS WILD-TYPE     25     19     24
D60V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 25
  CLUS_2                3                 19
  CLUS_3                3                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        5      4      0
  10P LOSS WILD-TYPE     34     20     14
D60V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                4                 20
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        5      1      2      2
  10Q LOSS WILD-TYPE     31     25     14     10
D61V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                1                 25
  CLUS_3                2                 14
  CLUS_4                2                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        2      0      3      1      2
  10Q LOSS WILD-TYPE     16     11     17     17      9
D61V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                0                 11
  CLUS_3                3                 17
  CLUS_4                1                 17
  CLUS_5                2                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V3, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED    2  2
  10Q LOSS WILD-TYPE 21 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      2    2
  10Q LOSS WILD-TYPE   21   20
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10Q LOSS MUTATED        0      1      0      0      1      0      2      0
  10Q LOSS WILD-TYPE      8      6      7      3      3      4      4      6
D61V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  6
  CLUS_3                0                  7
  CLUS_4                0                  3
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                2                  4
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        3      0      3      2
  10Q LOSS WILD-TYPE     21     13     14     21
D61V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                3                 14
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        3      2      0      3
  10Q LOSS WILD-TYPE     20     21      7     21
D61V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                2                 21
  CLUS_3                0                  7
  CLUS_4                3                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      1      3
  10Q LOSS WILD-TYPE     32     15     23
D61V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                1                 15
  CLUS_3                3                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        1      4      0      3      0
  10Q LOSS WILD-TYPE     15     23     11     17      4
D61V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                4                 23
  CLUS_3                0                 11
  CLUS_4                3                 17
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        3      2      3
  10Q LOSS WILD-TYPE     25     20     24
D61V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 25
  CLUS_2                2                 20
  CLUS_3                3                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      4      0
  10Q LOSS WILD-TYPE     35     20     14
D61V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                4                 20
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        7      3      7      7
  11P LOSS WILD-TYPE     29     23      9      5
D62V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 29
  CLUS_2                3                 23
  CLUS_3                7                  9
  CLUS_4                7                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        4      1     11      2      4
  11P LOSS WILD-TYPE     14     10      9     16      7
D62V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                1                 10
  CLUS_3               11                  9
  CLUS_4                2                 16
  CLUS_5                4                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V3, binary
                    cls
clus                  0  1
  11P LOSS MUTATED    6  5
  11P LOSS WILD-TYPE 17 17
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      6    5
  11P LOSS WILD-TYPE   17   17
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                5                 17
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P LOSS MUTATED        1      1      1      1      1      1      2      3
  11P LOSS WILD-TYPE      7      6      6      2      3      3      4      3
D62V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  6
  CLUS_3                1                  6
  CLUS_4                1                  2
  CLUS_5                1                  3
  CLUS_6                1                  3
  CLUS_7                2                  4
  CLUS_8                3                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        5      2      8      7
  11P LOSS WILD-TYPE     19     11      9     16
D62V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                2                 11
  CLUS_3                8                  9
  CLUS_4                7                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        5      9      0      8
  11P LOSS WILD-TYPE     18     14      7     16
D62V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                9                 14
  CLUS_3                0                  7
  CLUS_4                8                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       11      2      9
  11P LOSS WILD-TYPE     25     14     17
D62V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               11                 25
  CLUS_2                2                 14
  CLUS_3                9                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        4      7      3      6      2
  11P LOSS WILD-TYPE     12     20      8     14      2
D62V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                 12
  CLUS_2                7                 20
  CLUS_3                3                  8
  CLUS_4                6                 14
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      5      9
  11P LOSS WILD-TYPE     21     17     18
D62V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 21
  CLUS_2                5                 17
  CLUS_3                9                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       11      6      4
  11P LOSS WILD-TYPE     28     18     10
D62V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                6                 18
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        7      3      6      7
  11Q LOSS WILD-TYPE     29     23     10      5
D63V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 29
  CLUS_2                3                 23
  CLUS_3                6                 10
  CLUS_4                7                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        2      1     11      2      5
  11Q LOSS WILD-TYPE     16     10      9     16      6
D63V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                1                 10
  CLUS_3               11                  9
  CLUS_4                2                 16
  CLUS_5                5                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V3, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED    5  5
  11Q LOSS WILD-TYPE 18 17
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      5    5
  11Q LOSS WILD-TYPE   18   17
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                5                 17
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q LOSS MUTATED        1      1      1      0      0      1      3      3
  11Q LOSS WILD-TYPE      7      6      6      3      4      3      3      3
D63V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  6
  CLUS_3                1                  6
  CLUS_4                0                  3
  CLUS_5                0                  4
  CLUS_6                1                  3
  CLUS_7                3                  3
  CLUS_8                3                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        4      2      8      7
  11Q LOSS WILD-TYPE     20     11      9     16
D63V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                2                 11
  CLUS_3                8                  9
  CLUS_4                7                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        4      9      0      8
  11Q LOSS WILD-TYPE     19     14      7     16
D63V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                9                 14
  CLUS_3                0                  7
  CLUS_4                8                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       11      1      9
  11Q LOSS WILD-TYPE     25     15     17
D63V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               11                 25
  CLUS_2                1                 15
  CLUS_3                9                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        4      6      3      6      2
  11Q LOSS WILD-TYPE     12     21      8     14      2
D63V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 12
  CLUS_2                6                 21
  CLUS_3                3                  8
  CLUS_4                6                 14
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        7      4      9
  11Q LOSS WILD-TYPE     21     18     18
D63V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 21
  CLUS_2                4                 18
  CLUS_3                9                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       11      5      4
  11Q LOSS WILD-TYPE     28     19     10
D63V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                5                 19
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        5      0      0      0
  12P LOSS WILD-TYPE     31     26     16     12
D64V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        0      2      1      2      0
  12P LOSS WILD-TYPE     18      9     19     16     11
D64V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                  9
  CLUS_3                1                 19
  CLUS_4                2                 16
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V3, binary
                    cls
clus                  0  1
  12P LOSS MUTATED    2  1
  12P LOSS WILD-TYPE 21 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2    1
  12P LOSS WILD-TYPE   21   21
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                 21
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12P LOSS MUTATED        0      0      0      0      1      0      0      2
  12P LOSS WILD-TYPE      8      7      7      3      3      4      6      4
D64V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                0                  7
  CLUS_3                0                  7
  CLUS_4                0                  3
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                0                  6
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        3      0      1      1
  12P LOSS WILD-TYPE     21     13     16     22
D64V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                1                 16
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        2      1      2      0
  12P LOSS WILD-TYPE     21     22      5     24
D64V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                 22
  CLUS_3                2                  5
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      3      1
  12P LOSS WILD-TYPE     35     13     25
D64V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                3                 13
  CLUS_3                1                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        1      2      0      1      1
  12P LOSS WILD-TYPE     15     25     11     19      3
D64V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 25
  CLUS_3                0                 11
  CLUS_4                1                 19
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      3      1
  12P LOSS WILD-TYPE     27     19     26
D64V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 27
  CLUS_2                3                 19
  CLUS_3                1                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        3      0      2
  12P LOSS WILD-TYPE     36     24     12
D64V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                0                 24
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        4      0      0      0
  12Q LOSS WILD-TYPE     32     26     16     12
D65V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        0      2      0      2      0
  12Q LOSS WILD-TYPE     18      9     20     16     11
D65V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                  9
  CLUS_3                0                 20
  CLUS_4                2                 16
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V3, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    2  1
  12Q LOSS WILD-TYPE 21 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2    1
  12Q LOSS WILD-TYPE   21   21
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                 21
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12Q LOSS MUTATED        0      0      0      0      1      0      0      2
  12Q LOSS WILD-TYPE      8      7      7      3      3      4      6      4
D65V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                0                  7
  CLUS_3                0                  7
  CLUS_4                0                  3
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                0                  6
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      0      0      1
  12Q LOSS WILD-TYPE     21     13     17     22
D65V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        2      0      2      0
  12Q LOSS WILD-TYPE     21     23      5     24
D65V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                0                 23
  CLUS_3                2                  5
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      2      1
  12Q LOSS WILD-TYPE     35     14     25
D65V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                2                 14
  CLUS_3                1                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        1      2      0      0      1
  12Q LOSS WILD-TYPE     15     25     11     20      3
D65V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 25
  CLUS_3                0                 11
  CLUS_4                0                 20
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      2      1
  12Q LOSS WILD-TYPE     27     20     26
D65V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 27
  CLUS_2                2                 20
  CLUS_3                1                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      0      2
  12Q LOSS WILD-TYPE     37     24     12
D65V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                0                 24
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       19      5      7      8
  13Q LOSS WILD-TYPE     17     21      9      4
D66V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               19                 17
  CLUS_2                5                 21
  CLUS_3                7                  9
  CLUS_4                8                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        9      1     11      5      4
  13Q LOSS WILD-TYPE      9     10      9     13      7
D66V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                9                  9
  CLUS_2                1                 10
  CLUS_3               11                  9
  CLUS_4                5                 13
  CLUS_5                4                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V3, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED    7 10
  13Q LOSS WILD-TYPE 16 12
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      7   10
  13Q LOSS WILD-TYPE   16   12
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                7                 16
  CLUS_2               10                 12
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  13Q LOSS MUTATED        3      2      2      2      2      1      2      3
  13Q LOSS WILD-TYPE      5      5      5      1      2      3      4      3
D66V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                2                  5
  CLUS_3                2                  5
  CLUS_4                2                  1
  CLUS_5                2                  2
  CLUS_6                1                  3
  CLUS_7                2                  4
  CLUS_8                3                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       11      3      6      9
  13Q LOSS WILD-TYPE     13     10     11     14
D66V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                3                 10
  CLUS_3                6                 11
  CLUS_4                9                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       10      9      2      8
  13Q LOSS WILD-TYPE     13     14      5     16
D66V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               10                 13
  CLUS_2                9                 14
  CLUS_3                2                  5
  CLUS_4                8                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       14      5     11
  13Q LOSS WILD-TYPE     22     11     15
D66V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                 22
  CLUS_2                5                 11
  CLUS_3               11                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        5     10      2     11      2
  13Q LOSS WILD-TYPE     11     17      9      9      2
D66V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                 11
  CLUS_2               10                 17
  CLUS_3                2                  9
  CLUS_4               11                  9
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        9     10     11
  13Q LOSS WILD-TYPE     19     12     16
D66V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                9                 19
  CLUS_2               10                 12
  CLUS_3               11                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       17      7      6
  13Q LOSS WILD-TYPE     22     17      8
D66V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               17                 22
  CLUS_2                7                 17
  CLUS_3                6                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        8      3      1      6
  14Q LOSS WILD-TYPE     28     23     15      6
D67V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 28
  CLUS_2                3                 23
  CLUS_3                1                 15
  CLUS_4                6                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        5      1      2      5      3
  14Q LOSS WILD-TYPE     13     10     18     13      8
D67V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                1                 10
  CLUS_3                2                 18
  CLUS_4                5                 13
  CLUS_5                3                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V3, binary
                    cls
clus                  0  1
  14Q LOSS MUTATED    6  4
  14Q LOSS WILD-TYPE 17 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      6    4
  14Q LOSS WILD-TYPE   17   18
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                4                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  14Q LOSS MUTATED        1      0      2      1      3      2      1      0
  14Q LOSS WILD-TYPE      7      7      5      2      1      2      5      6
D67V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  7
  CLUS_3                2                  5
  CLUS_4                1                  2
  CLUS_5                3                  1
  CLUS_6                2                  2
  CLUS_7                1                  5
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        7      0      1      8
  14Q LOSS WILD-TYPE     17     13     16     15
D67V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                0                 13
  CLUS_3                1                 16
  CLUS_4                8                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        5      1      3      7
  14Q LOSS WILD-TYPE     18     22      4     17
D67V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                1                 22
  CLUS_3                3                  4
  CLUS_4                7                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5      4      7
  14Q LOSS WILD-TYPE     31     12     19
D67V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                4                 12
  CLUS_3                7                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        2      8      3      3      0
  14Q LOSS WILD-TYPE     14     19      8     17      4
D67V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                8                 19
  CLUS_3                3                  8
  CLUS_4                3                 17
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3      5      8
  14Q LOSS WILD-TYPE     25     17     19
D67V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 25
  CLUS_2                5                 17
  CLUS_3                8                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5      6      5
  14Q LOSS WILD-TYPE     34     18      9
D67V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                6                 18
  CLUS_3                5                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       10      2      4      5
  15Q LOSS WILD-TYPE     26     24     12      7
D68V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 26
  CLUS_2                2                 24
  CLUS_3                4                 12
  CLUS_4                5                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        7      1      5      3      2
  15Q LOSS WILD-TYPE     11     10     15     15      9
D68V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                1                 10
  CLUS_3                5                 15
  CLUS_4                3                 15
  CLUS_5                2                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V3, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED    5  4
  15Q LOSS WILD-TYPE 18 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      5    4
  15Q LOSS WILD-TYPE   18   18
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                4                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  15Q LOSS MUTATED        2      0      1      2      1      1      1      1
  15Q LOSS WILD-TYPE      6      7      6      1      3      3      5      5
D68V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  7
  CLUS_3                1                  6
  CLUS_4                2                  1
  CLUS_5                1                  3
  CLUS_6                1                  3
  CLUS_7                1                  5
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        9      2      1      6
  15Q LOSS WILD-TYPE     15     11     16     17
D68V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                2                 11
  CLUS_3                1                 16
  CLUS_4                6                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        7      2      2      7
  15Q LOSS WILD-TYPE     16     21      5     17
D68V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                2                 21
  CLUS_3                2                  5
  CLUS_4                7                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9      2      7
  15Q LOSS WILD-TYPE     27     14     19
D68V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 27
  CLUS_2                2                 14
  CLUS_3                7                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        0      7      2      8      1
  15Q LOSS WILD-TYPE     16     20      9     12      3
D68V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                7                 20
  CLUS_3                2                  9
  CLUS_4                8                 12
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        4      7      7
  15Q LOSS WILD-TYPE     24     15     20
D68V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                 24
  CLUS_2                7                 15
  CLUS_3                7                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9      5      4
  15Q LOSS WILD-TYPE     30     19     10
D68V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 30
  CLUS_2                5                 19
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        5      0      1      0
  16P LOSS WILD-TYPE     31     26     15     12
D69V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                0                 26
  CLUS_3                1                 15
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        4      0      0      2      0
  16P LOSS WILD-TYPE     14     11     20     16     11
D69V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                0                 11
  CLUS_3                0                 20
  CLUS_4                2                 16
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V3, binary
                    cls
clus                  0  1
  16P LOSS MUTATED    2  3
  16P LOSS WILD-TYPE 21 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2    3
  16P LOSS WILD-TYPE   21   19
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                3                 19
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P LOSS MUTATED        2      0      0      1      2      0      0      0
  16P LOSS WILD-TYPE      6      7      7      2      2      4      6      6
D69V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  7
  CLUS_3                0                  7
  CLUS_4                1                  2
  CLUS_5                2                  2
  CLUS_6                0                  4
  CLUS_7                0                  6
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        6      0      0      0
  16P LOSS WILD-TYPE     18     13     17     23
D69V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        4      0      2      0
  16P LOSS WILD-TYPE     19     23      5     24
D69V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                0                 23
  CLUS_3                2                  5
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      4      0
  16P LOSS WILD-TYPE     34     12     26
D69V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 34
  CLUS_2                4                 12
  CLUS_3                0                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        0      4      0      2      0
  16P LOSS WILD-TYPE     16     23     11     18      4
D69V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                4                 23
  CLUS_3                0                 11
  CLUS_4                2                 18
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      6      0
  16P LOSS WILD-TYPE     28     16     27
D69V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 28
  CLUS_2                6                 16
  CLUS_3                0                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      2      2
  16P LOSS WILD-TYPE     37     22     12
D69V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                2                 22
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        3      0      2      0
  16Q LOSS WILD-TYPE     33     26     14     12
D70V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 33
  CLUS_2                0                 26
  CLUS_3                2                 14
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        4      0      1      0      0
  16Q LOSS WILD-TYPE     14     11     19     18     11
D70V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                0                 11
  CLUS_3                1                 19
  CLUS_4                0                 18
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V3, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED    1  3
  16Q LOSS WILD-TYPE 22 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      1    3
  16Q LOSS WILD-TYPE   22   19
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                3                 19
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q LOSS MUTATED        2      0      0      1      1      0      0      0
  16Q LOSS WILD-TYPE      6      7      7      2      3      4      6      6
D70V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  7
  CLUS_3                0                  7
  CLUS_4                1                  2
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                0                  6
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        4      1      0      0
  16Q LOSS WILD-TYPE     20     12     17     23
D70V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                 12
  CLUS_3                0                 17
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        4      1      0      0
  16Q LOSS WILD-TYPE     19     22      7     24
D70V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                1                 22
  CLUS_3                0                  7
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      2      0
  16Q LOSS WILD-TYPE     33     14     26
D70V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 33
  CLUS_2                2                 14
  CLUS_3                0                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        0      2      0      2      1
  16Q LOSS WILD-TYPE     16     25     11     18      3
D70V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                2                 25
  CLUS_3                0                 11
  CLUS_4                2                 18
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      5      0
  16Q LOSS WILD-TYPE     28     17     27
D70V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 28
  CLUS_2                5                 17
  CLUS_3                0                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      2      0
  16Q LOSS WILD-TYPE     36     22     14
D70V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                2                 22
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       16      3     10      3
  17P LOSS WILD-TYPE     20     23      6      9
D71V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               16                 20
  CLUS_2                3                 23
  CLUS_3               10                  6
  CLUS_4                3                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       11      0     12      4      1
  17P LOSS WILD-TYPE      7     11      8     14     10
D71V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                  7
  CLUS_2                0                 11
  CLUS_3               12                  8
  CLUS_4                4                 14
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V3, binary
                    cls
clus                  0  1
  17P LOSS MUTATED    6  9
  17P LOSS WILD-TYPE 17 13
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      6    9
  17P LOSS WILD-TYPE   17   13
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                9                 13
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17P LOSS MUTATED        2      3      1      3      1      0      3      2
  17P LOSS WILD-TYPE      6      4      6      0      3      4      3      4
D71V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                3                  4
  CLUS_3                1                  6
  CLUS_4                3                  0
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                3                  3
  CLUS_8                2                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       14      4      7      3
  17P LOSS WILD-TYPE     10      9     10     20
D71V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                 10
  CLUS_2                4                  9
  CLUS_3                7                 10
  CLUS_4                3                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       12     11      2      3
  17P LOSS WILD-TYPE     11     12      5     21
D71V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                 11
  CLUS_2               11                 12
  CLUS_3                2                  5
  CLUS_4                3                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       17      6      5
  17P LOSS WILD-TYPE     19     10     21
D71V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                 19
  CLUS_2                6                 10
  CLUS_3                5                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        5      8      0     13      2
  17P LOSS WILD-TYPE     11     19     11      7      2
D71V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                 11
  CLUS_2                8                 19
  CLUS_3                0                 11
  CLUS_4               13                  7
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        9     13      5
  17P LOSS WILD-TYPE     19      9     22
D71V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                9                 19
  CLUS_2               13                  9
  CLUS_3                5                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18      6      3
  17P LOSS WILD-TYPE     21     18     11
D71V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                 21
  CLUS_2                6                 18
  CLUS_3                3                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       10      3      9      2
  17Q LOSS WILD-TYPE     26     23      7     10
D72V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                 26
  CLUS_2                3                 23
  CLUS_3                9                  7
  CLUS_4                2                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        7      1     12      3      1
  17Q LOSS WILD-TYPE     11     10      8     15     10
D72V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                1                 10
  CLUS_3               12                  8
  CLUS_4                3                 15
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V3, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    6  8
  17Q LOSS WILD-TYPE 17 14
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      6    8
  17Q LOSS WILD-TYPE   17   14
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                8                 14
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17Q LOSS MUTATED        2      2      1      2      1      0      3      3
  17Q LOSS WILD-TYPE      6      5      6      1      3      4      3      3
D72V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                2                  5
  CLUS_3                1                  6
  CLUS_4                2                  1
  CLUS_5                1                  3
  CLUS_6                0                  4
  CLUS_7                3                  3
  CLUS_8                3                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       10      4      7      3
  17Q LOSS WILD-TYPE     14      9     10     20
D72V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                4                  9
  CLUS_3                7                 10
  CLUS_4                3                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        9     11      1      3
  17Q LOSS WILD-TYPE     14     12      6     21
D72V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2               11                 12
  CLUS_3                1                  6
  CLUS_4                3                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       16      3      5
  17Q LOSS WILD-TYPE     20     13     21
D72V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                 20
  CLUS_2                3                 13
  CLUS_3                5                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        6      6      0     10      2
  17Q LOSS WILD-TYPE     10     21     11     10      2
D72V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 10
  CLUS_2                6                 21
  CLUS_3                0                 11
  CLUS_4               10                 10
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        9      9      5
  17Q LOSS WILD-TYPE     19     13     22
D72V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 19
  CLUS_2                9                 13
  CLUS_3                5                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       16      5      2
  17Q LOSS WILD-TYPE     23     19     12
D72V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                 23
  CLUS_2                5                 19
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       16      5      8      8
  18P LOSS WILD-TYPE     20     21      8      4
D73V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               16                 20
  CLUS_2                5                 21
  CLUS_3                8                  8
  CLUS_4                8                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        7      3     13      7      4
  18P LOSS WILD-TYPE     11      8      7     11      7
D73V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                3                  8
  CLUS_3               13                  7
  CLUS_4                7                 11
  CLUS_5                4                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V3, binary
                    cls
clus                  0  1
  18P LOSS MUTATED    9 11
  18P LOSS WILD-TYPE 14 11
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      9   11
  18P LOSS WILD-TYPE   14   11
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2               11                 11
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P LOSS MUTATED        1      4      3      2      2      2      3      3
  18P LOSS WILD-TYPE      7      3      4      1      2      2      3      3
D73V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                4                  3
  CLUS_3                3                  4
  CLUS_4                2                  1
  CLUS_5                2                  2
  CLUS_6                2                  2
  CLUS_7                3                  3
  CLUS_8                3                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       11      4      8     11
  18P LOSS WILD-TYPE     13      9      9     12
D73V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                4                  9
  CLUS_3                8                  9
  CLUS_4               11                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        9     12      4      9
  18P LOSS WILD-TYPE     14     11      3     15
D73V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2               12                 11
  CLUS_3                4                  3
  CLUS_4                9                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       15      6     13
  18P LOSS WILD-TYPE     21     10     13
D73V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                 21
  CLUS_2                6                 10
  CLUS_3               13                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        5     11      5     11      2
  18P LOSS WILD-TYPE     11     16      6      9      2
D73V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                 11
  CLUS_2               11                 16
  CLUS_3                5                  6
  CLUS_4               11                  9
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        9     11     13
  18P LOSS WILD-TYPE     19     11     14
D73V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 19
  CLUS_2               11                 11
  CLUS_3               13                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       17      8      8
  18P LOSS WILD-TYPE     22     16      6
D73V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               17                 22
  CLUS_2                8                 16
  CLUS_3                8                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       15      5      7      8
  18Q LOSS WILD-TYPE     21     21      9      4
D74V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               15                 21
  CLUS_2                5                 21
  CLUS_3                7                  9
  CLUS_4                8                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        6      4     12      6      4
  18Q LOSS WILD-TYPE     12      7      8     12      7
D74V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                4                  7
  CLUS_3               12                  8
  CLUS_4                6                 12
  CLUS_5                4                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V3, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED   10  9
  18Q LOSS WILD-TYPE 13 13
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     10    9
  18Q LOSS WILD-TYPE   13   13
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 13
  CLUS_2                9                 13
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q LOSS MUTATED        1      2      3      2      2      2      3      4
  18Q LOSS WILD-TYPE      7      5      4      1      2      2      3      2
D74V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  5
  CLUS_3                3                  4
  CLUS_4                2                  1
  CLUS_5                2                  2
  CLUS_6                2                  2
  CLUS_7                3                  3
  CLUS_8                4                  2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       10      4      7     11
  18Q LOSS WILD-TYPE     14      9     10     12
D74V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                4                  9
  CLUS_3                7                 10
  CLUS_4               11                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        9     11      3      9
  18Q LOSS WILD-TYPE     14     12      4     15
D74V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2               11                 12
  CLUS_3                3                  4
  CLUS_4                9                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       14      5     13
  18Q LOSS WILD-TYPE     22     11     13
D74V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               14                 22
  CLUS_2                5                 11
  CLUS_3               13                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        5     11      5      9      2
  18Q LOSS WILD-TYPE     11     16      6     11      2
D74V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                 11
  CLUS_2               11                 16
  CLUS_3                5                  6
  CLUS_4                9                 11
  CLUS_5                2                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        8     10     13
  18Q LOSS WILD-TYPE     20     12     14
D74V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                8                 20
  CLUS_2               10                 12
  CLUS_3               13                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       15      8      8
  18Q LOSS WILD-TYPE     24     16      6
D74V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               15                 24
  CLUS_2                8                 16
  CLUS_3                8                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        5      0      0      0
  19P LOSS WILD-TYPE     31     26     16     12
D75V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      0      0      2      0
  19P LOSS WILD-TYPE     17     11     20     16     11
D75V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                 11
  CLUS_3                0                 20
  CLUS_4                2                 16
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V3, binary
                    cls
clus                  0  1
  19P LOSS MUTATED    1  0
  19P LOSS WILD-TYPE 22 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      1    0
  19P LOSS WILD-TYPE   22   22
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                0                 22
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19P LOSS MUTATED        0      0      0      0      1      0      0      0
  19P LOSS WILD-TYPE      8      7      7      3      3      4      6      6
D75V4, multiclass
[1] "Remove cluster labels:" "19P LOSS MUTATED"      
clus
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 1                 44 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JP         TCGA-OR-A5JR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5KO         TCGA-OR-A5KU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5LD         TCGA-OR-A5LG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        3      0      0      0
  19P LOSS WILD-TYPE     21     13     17     23
D75V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        1      0      2      0
  19P LOSS WILD-TYPE     22     23      5     24
D75V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                0                 23
  CLUS_3                2                  5
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      2      0
  19P LOSS WILD-TYPE     35     14     26
D75V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                2                 14
  CLUS_3                0                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      2      0      0      0
  19P LOSS WILD-TYPE     15     25     11     20      4
D75V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 25
  CLUS_3                0                 11
  CLUS_4                0                 20
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      2      0
  19P LOSS WILD-TYPE     27     20     27
D75V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 27
  CLUS_2                2                 20
  CLUS_3                0                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      0      2
  19P LOSS WILD-TYPE     38     24     12
D75V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                0                 24
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        4      0      0      0
  19Q LOSS WILD-TYPE     32     26     16     12
D76V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                0                 26
  CLUS_3                0                 16
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      1      0      1      0
  19Q LOSS WILD-TYPE     17     10     20     17     11
D76V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                 10
  CLUS_3                0                 20
  CLUS_4                1                 17
  CLUS_5                0                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V3, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    1  1
  19Q LOSS WILD-TYPE 22 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      1    1
  19Q LOSS WILD-TYPE   22   21
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                1                 21
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q LOSS MUTATED        0      0      0      0      1      0      0      1
  19Q LOSS WILD-TYPE      8      7      7      3      3      4      6      5
D76V4, multiclass
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 43 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JP         TCGA-OR-A5JR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5KO         TCGA-OR-A5KU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5LD         TCGA-OR-A5LG 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LS         TCGA-OR-A5LT 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-PA-A5YG         TCGA-PK-A5H9 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-PK-A5HA 
"19Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        2      0      0      1
  19Q LOSS WILD-TYPE     22     13     17     22
D76V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        2      0      1      0
  19Q LOSS WILD-TYPE     21     23      6     24
D76V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                0                 23
  CLUS_3                1                  6
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      1
  19Q LOSS WILD-TYPE     35     15     25
D76V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                1                 15
  CLUS_3                1                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      1      0      0      1
  19Q LOSS WILD-TYPE     15     26     11     20      3
D76V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                1                 26
  CLUS_3                0                 11
  CLUS_4                0                 20
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      1
  19Q LOSS WILD-TYPE     27     21     26
D76V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 27
  CLUS_2                1                 21
  CLUS_3                1                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2      0      1
  19Q LOSS WILD-TYPE     37     24     13
D76V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                0                 24
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        6      0      3      0
  20P LOSS WILD-TYPE     30     26     13     12
D77V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                 30
  CLUS_2                0                 26
  CLUS_3                3                 13
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        3      0      3      0      1
  20P LOSS WILD-TYPE     15     11     17     18     10
D77V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                0                 11
  CLUS_3                3                 17
  CLUS_4                0                 18
  CLUS_5                1                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V3, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    0  5
  20P LOSS WILD-TYPE 23 17
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      0    5
  20P LOSS WILD-TYPE   23   17
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                5                 17
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P LOSS MUTATED        1      1      0      1      0      0      1      1
  20P LOSS WILD-TYPE      7      6      7      2      4      4      5      5
D77V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  6
  CLUS_3                0                  7
  CLUS_4                1                  2
  CLUS_5                0                  4
  CLUS_6                0                  4
  CLUS_7                1                  5
  CLUS_8                1                  5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      1      2      0
  20P LOSS WILD-TYPE     20     12     15     23
D77V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                 12
  CLUS_3                2                 15
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      3      0      0
  20P LOSS WILD-TYPE     19     20      7     24
D77V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                3                 20
  CLUS_3                0                  7
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      3      0
  20P LOSS WILD-TYPE     32     13     26
D77V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                3                 13
  CLUS_3                0                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        1      2      0      3      1
  20P LOSS WILD-TYPE     15     25     11     17      3
D77V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 25
  CLUS_3                0                 11
  CLUS_4                3                 17
  CLUS_5                1                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        2      5      0
  20P LOSS WILD-TYPE     26     17     27
D77V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 26
  CLUS_2                5                 17
  CLUS_3                0                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        5      2      0
  20P LOSS WILD-TYPE     34     22     14
D77V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                2                 22
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      0      2      0
  20Q LOSS WILD-TYPE     35     26     14     12
D78V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                0                 26
  CLUS_3                2                 14
  CLUS_4                0                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      1      0      0
  20Q LOSS WILD-TYPE     17     11     19     18     11
D78V2, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
D78V3, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    0  2
  20Q LOSS WILD-TYPE 23 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0    2
  20Q LOSS WILD-TYPE   23   20
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q LOSS MUTATED        0      1      0      1      0      0      0      0
  20Q LOSS WILD-TYPE      8      6      7      2      4      4      6      6
D78V4, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 43 
        TCGA-OR-A5J2         TCGA-OR-A5J3         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5KO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      0      1      0
  20Q LOSS WILD-TYPE     23     13     16     23
D78V5, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JB         TCGA-OR-A5JC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      1      0      0
  20Q LOSS WILD-TYPE     22     22      7     24
D78V6, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JB         TCGA-OR-A5JC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      0      0
  20Q LOSS WILD-TYPE     34     16     26
D78V7, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      0      1      0
  20Q LOSS WILD-TYPE     15     27     11     19      4
D78V8, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        1      1      0
  20Q LOSS WILD-TYPE     27     21     27
D78V9, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      0      0
  20Q LOSS WILD-TYPE     37     24     14
D78V10, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 

Clustering(79) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        8      2      1      4
  21Q LOSS WILD-TYPE     28     24     15      8
D79V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                 28
  CLUS_2                2                 24
  CLUS_3                1                 15
  CLUS_4                4                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        4      0      2      3      3
  21Q LOSS WILD-TYPE     14     11     18     15      8
D79V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                0                 11
  CLUS_3                2                 18
  CLUS_4                3                 15
  CLUS_5                3                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V3, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED    5  2
  21Q LOSS WILD-TYPE 18 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      5    2
  21Q LOSS WILD-TYPE   18   20
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                2                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q LOSS MUTATED        0      1      1      0      3      1      1      0
  21Q LOSS WILD-TYPE      8      6      6      3      1      3      5      6
D79V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  6
  CLUS_3                1                  6
  CLUS_4                0                  3
  CLUS_5                3                  1
  CLUS_6                1                  3
  CLUS_7                1                  5
  CLUS_8                0                  6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        6      0      2      4
  21Q LOSS WILD-TYPE     18     13     15     19
D79V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                0                 13
  CLUS_3                2                 15
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        4      1      2      5
  21Q LOSS WILD-TYPE     19     22      5     19
D79V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                1                 22
  CLUS_3                2                  5
  CLUS_4                5                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      4      5
  21Q LOSS WILD-TYPE     33     12     21
D79V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 33
  CLUS_2                4                 12
  CLUS_3                5                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        1      7      1      3      0
  21Q LOSS WILD-TYPE     15     20     10     17      4
D79V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                7                 20
  CLUS_3                1                 10
  CLUS_4                3                 17
  CLUS_5                0                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        1      5      6
  21Q LOSS WILD-TYPE     27     17     21
D79V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                1                 27
  CLUS_2                5                 17
  CLUS_3                6                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      5      4
  21Q LOSS WILD-TYPE     36     19     10
D79V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                5                 19
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       22      7     11      8
  22Q LOSS WILD-TYPE     14     19      5      4
D80V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               22                 14
  CLUS_2                7                 19
  CLUS_3               11                  5
  CLUS_4                8                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       13      4     13      8      3
  22Q LOSS WILD-TYPE      5      7      7     10      8
D80V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               13                  5
  CLUS_2                4                  7
  CLUS_3               13                  7
  CLUS_4                8                 10
  CLUS_5                3                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D80V3, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED   12 14
  22Q LOSS WILD-TYPE 11  8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     12   14
  22Q LOSS WILD-TYPE   11    8
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 11
  CLUS_2               14                  8
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q LOSS MUTATED        5      4      2      3      3      3      2      4
  22Q LOSS WILD-TYPE      3      3      5      0      1      1      4      2
D80V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                4                  3
  CLUS_3                2                  5
  CLUS_4                3                  0
  CLUS_5                3                  1
  CLUS_6                3                  1
  CLUS_7                2                  4
  CLUS_8                4                  2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       15      7      7     12
  22Q LOSS WILD-TYPE      9      6     10     11
D80V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               15                  9
  CLUS_2                7                  6
  CLUS_3                7                 10
  CLUS_4               12                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       14     13      5      9
  22Q LOSS WILD-TYPE      9     10      2     15
D80V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               14                  9
  CLUS_2               13                 10
  CLUS_3                5                  2
  CLUS_4                9                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       20      8     13
  22Q LOSS WILD-TYPE     16      8     13
D80V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               20                 16
  CLUS_2                8                  8
  CLUS_3               13                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        8     13      5     12      3
  22Q LOSS WILD-TYPE      8     14      6      8      1
D80V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                  8
  CLUS_2               13                 14
  CLUS_3                5                  6
  CLUS_4               12                  8
  CLUS_5                3                  1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       13     13     14
  22Q LOSS WILD-TYPE     15      9     13
D80V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               13                 15
  CLUS_2               13                  9
  CLUS_3               14                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       20     10     10
  22Q LOSS WILD-TYPE     19     14      4
D80V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               20                 19
  CLUS_2               10                 14
  CLUS_3               10                  4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       14      0      0      2
  XP LOSS WILD-TYPE     22     26     16     10
D81V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              14                22
  CLUS_2               0                26
  CLUS_3               0                16
  CLUS_4               2                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        5      3      3      1      2
  XP LOSS WILD-TYPE     13      8     17     17      9
D81V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               3                 8
  CLUS_3               3                17
  CLUS_4               1                17
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D81V3, binary
                   cls
clus                 0  1
  XP LOSS MUTATED    3  5
  XP LOSS WILD-TYPE 20 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XP LOSS MUTATED      3    5
  XP LOSS WILD-TYPE   20   17
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               5                17
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XP LOSS MUTATED        1      0      1      0      1      0      1      4
  XP LOSS WILD-TYPE      7      7      6      3      3      4      5      2
D81V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 7
  CLUS_3               1                 6
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               1                 5
  CLUS_8               4                 2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        9      0      2      3
  XP LOSS WILD-TYPE     15     13     15     20
D81V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               0                13
  CLUS_3               2                15
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        9      2      1      2
  XP LOSS WILD-TYPE     14     21      6     22
D81V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               9                14
  CLUS_2               2                21
  CLUS_3               1                 6
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        6      4      4
  XP LOSS WILD-TYPE     30     12     22
D81V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               4                12
  CLUS_3               4                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        1      6      0      5      2
  XP LOSS WILD-TYPE     15     21     11     15      2
D81V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                21
  CLUS_3               0                11
  CLUS_4               5                15
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        3      7      4
  XP LOSS WILD-TYPE     25     15     23
D81V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                25
  CLUS_2               7                15
  CLUS_3               4                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        8      4      2
  XP LOSS WILD-TYPE     31     20     12
D81V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               8                31
  CLUS_2               4                20
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       12      1      0      2
  XQ LOSS WILD-TYPE     24     25     16     10
D82V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                24
  CLUS_2               1                25
  CLUS_3               0                16
  CLUS_4               2                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        5      4      2      1      2
  XQ LOSS WILD-TYPE     13      7     18     17      9
D82V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               4                 7
  CLUS_3               2                18
  CLUS_4               1                17
  CLUS_5               2                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D82V3, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED    2  6
  XQ LOSS WILD-TYPE 21 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    6
  XQ LOSS WILD-TYPE   21   16
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               6                16
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ LOSS MUTATED        1      1      0      0      1      0      1      4
  XQ LOSS WILD-TYPE      7      6      7      3      3      4      5      2
D82V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 6
  CLUS_3               0                 7
  CLUS_4               0                 3
  CLUS_5               1                 3
  CLUS_6               0                 4
  CLUS_7               1                 5
  CLUS_8               4                 2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        9      0      3      2
  XQ LOSS WILD-TYPE     15     13     14     21
D82V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               0                13
  CLUS_3               3                14
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        9      3      1      1
  XQ LOSS WILD-TYPE     14     20      6     23
D82V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                14
  CLUS_2               3                20
  CLUS_3               1                 6
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7      4      3
  XQ LOSS WILD-TYPE     29     12     23
D82V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               4                12
  CLUS_3               3                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        2      5      0      5      2
  XQ LOSS WILD-TYPE     14     22     11     15      2
D82V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                14
  CLUS_2               5                22
  CLUS_3               0                11
  CLUS_4               5                15
  CLUS_5               2                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4      7      3
  XQ LOSS WILD-TYPE     24     15     24
D82V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                24
  CLUS_2               7                15
  CLUS_3               3                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        9      3      2
  XQ LOSS WILD-TYPE     30     21     12
D82V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                30
  CLUS_2               3                21
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
