gene1	gene2	pval	qval
PIK3CA	14q-Del	0.000109	1
PIK3CA	Amp_19q12	0.000109	1
Amp_10p15.1	Del_16q24.3	0.000121	1
CDH1	Del_3p21.31	0.000142	1
PIK3CA	Del_5q11.2	0.000181	1
CDH1	Del_8p23.2	0.000193	1
PIK3CA	Del_13q14.2	0.00021	1
Amp_19q12	Del_16q24.3	0.00021	1
CDH1	Amp_17q23.1	0.000217	1
PIK3CA	Del_2q37.3	0.000229	1
PIK3CA	Del_5q21.3	0.000238	1
16q-Del	Amp_10p15.1	0.000249	1
CDH1	20p-Amp	0.000266	1
CDH1	Del_9p23	0.00027	1
PIK3CA	Amp_12p13.33	0.000273	1
CDH1	Amp_17q12	0.000286	1
CDH1	Del_5q11.2	0.000344	1
PIK3CA	Amp_6p23	0.000393	1
PIK3CA	8q-Amp	0.000411	1
Amp_3q26.32	Del_16q24.3	0.000427	1
Amp_12p13.33	Del_16q24.3	0.000453	1
CDH1	Del_19p13.3	0.000458	1
TP53	22q-Del	0.000514	1
TP53	Del_1p22.1	0.000523	1
CDH1	Del_11p15.5	0.000564	1
CDH1	Amp_15q26.3	0.000685	1
CDH1	Del_10q26.3	0.000821	1
CDH1	Del_2q37.3	0.00084	1
TP53	Del_6q15	0.000896	1
PIK3CA	5q-Del	0.000926	1
NCOR1	Del_6q15	0.00105	1
MAP3K1	Amp_6p23	0.00109	1
CDH1	5q-Del	0.00112	1
16p-Amp	17p-Del	0.0014	1
20p-Amp	Del_20p13	0.00145	1
CDH1	Del_4p16.3	0.00173	1
CDH1	Amp_13q34	0.00183	1
PIK3CA	Del_9q34.2	0.00207	1
PIK3CA	Del_9q21.11	0.00216	1
PIK3CA	Del_4p16.3	0.00228	1
CDH1	Amp_12p13.33	0.00231	1
16q-Del	Amp_20q13.2	0.00241	1
PIK3CA	Del_10q26.3	0.00257	1
CDH1	Amp_19q12	0.00258	1
16q-Del	Amp_3q26.32	0.0026	1
Amp_1q44	Amp_8p11.23	0.00271	1
CDH1	Amp_10p15.1	0.00283	1
MAP3K1	Del_17p12	0.00284	1
CDH1	8q-Amp	0.00289	1
Amp_1q21.3	Del_21q11.2	0.00291	1
PIK3CA	Del_19p13.3	0.00313	1
MAP3K1	Amp_10p15.1	0.00326	1
1q-Amp	Del_19p13.3	0.0037	1
1q-Amp	Amp_8p11.23	0.00384	1
8q-Amp	4q-Del	0.00399	1
CDH1	Del_20p13	0.004	1
PIK3CA	Del_6p25.3	0.00404	1
CDH1	4p-Del	0.00417	1
Del_5q11.2	Del_16q24.3	0.00434	1
GPS2	Amp_1q44	0.00451	1
1q-Del	Amp_1q44	0.00451	1
TP53	6q-Del	0.00485	1
GATA3	Del_5q21.3	0.005	1
PIK3CA	Amp_1p22.3	0.00503	1
GPS2	Amp_1q21.3	0.0052	1
1q-Amp	Del_11p15.5	0.0052	1
1q-Del	Amp_1q21.3	0.0052	1
CDH1	Amp_3p25.1	0.00549	1
MLL3	Amp_17q23.1	0.00603	1
MAP3K1	17p-Del	0.0063	1
GATA3	PIK3CA	0.00653	1
PIK3CA	4p-Del	0.00653	1
Amp_1p22.3	Del_9p23	0.00688	1
GATA3	Amp_10p15.1	0.007	1
TP53	Amp_1q44	0.00704	1
CDH1	Del_6p25.3	0.00721	1
MLL3	Del_20p13	0.00721	1
PIK3CA	Amp_13q34	0.00724	1
PIK3CA	8p-Amp	0.00789	1
PIK3CA	Del_9p21.3	0.00848	1
PIK3CA	Del_11p15.5	0.00858	1
PIK3CA	16p-Del	0.00859	1
1q-Amp	Del_3p21.31	0.00888	1
Amp_1q21.3	Del_3p21.31	0.00894	1
Amp_1q44	Del_21q11.2	0.00907	1
TP53	16p-Amp	0.00914	1
PIK3CA	Del_6q15	0.0095	1
GATA3	Del_4q35.1	0.00955	1
MAP3K1	Amp_17q12	0.0101	1
PIK3CA	13q-Del	0.0101	1
Amp_1p22.3	Del_9p21.3	0.0101	1
CDH1	13q-Del	0.0106	1
TBX3	Del_1p36.13	0.0107	1
Amp_8p11.23	Del_17q21.31	0.0109	1
CDH1	Del_1p36.13	0.011	1
PIK3CA	Del_15q13.1	0.011	1
TP53	1p-Del	0.011	1
MAP3K1	5q-Del	0.0111	1
PIK3CA	Amp_19q13.42	0.0112	1
MYH9	8q-Amp	0.0114	1
CDH1	Del_4q35.1	0.0116	1
CDH1	Del_15q13.1	0.0116	1
CDH1	Amp_6q21	0.0117	1
CDH1	Amp_19q13.42	0.0117	1
EYS	22q-Del	0.0117	1
16p-Amp	Del_17p12	0.0118	1
22q-Del	Amp_6q21	0.0122	1
CDH1	Del_13q14.2	0.0126	1
16p-Amp	16p-Del	0.0127	1
CDH1	9p-Del	0.013	1
1q-Amp	Del_21q11.2	0.013	1
GATA3	8q-Amp	0.0132	1
GATA3	Amp_8p11.21	0.0132	1
PTEN	Del_15q13.1	0.0132	1
FOXA1	TP53	0.0133	1
CASZ1	Del_11q23.3	0.0134	1
16q-Del	Del_5q21.3	0.0134	1
16q-Del	Del_5q11.2	0.0138	1
MAP3K1	Amp_3q26.32	0.0139	1
16q-Del	Amp_19q12	0.0141	1
PTEN	16p-Amp	0.0144	1
RUNX1	Del_8p23.2	0.0145	1
MAP2K4	Del_19p13.3	0.0147	1
PIK3CA	Del_19q13.32	0.0148	1
MLL3	Amp_17q12	0.0149	1
PIK3CA	9q-Del	0.015	1
Amp_1q21.3	Del_8p23.2	0.0152	1
MAP2K4	TP53	0.0154	1
NF1	Amp_8p11.21	0.0154	1
1q-Amp	Del_8p23.2	0.0156	1
1q-Amp	Del_4p16.3	0.0162	1
Amp_11q13.3	Amp_13q34	0.0163	1
MLL3	Del_11q25	0.0164	1
GATA3	5q-Del	0.017	1
NCOR1	Del_10q26.3	0.017	1
16p-Amp	Del_12q24.31	0.017	1
Amp_13q34	Del_6q15	0.0175	1
RUNX1	Amp_8q24.21	0.0176	1
16q-Del	Amp_8q24.21	0.0176	1
5p-Amp	Del_22q13.32	0.0178	1
Amp_6q21	Del_22q13.32	0.0178	1
MAP3K1	Del_19p13.3	0.0179	1
16p-Amp	Del_17q21.31	0.0181	1
GATA3	Amp_8q24.21	0.0183	1
PIK3CA	1q-Del	0.0189	1
GATA3	Amp_3q26.32	0.0192	1
MAP3K1	Del_10q26.3	0.0193	1
1q-Amp	Del_5q21.3	0.0195	1
Amp_1q21.3	Del_12p13.1	0.0195	1
MAP3K1	Del_12q23.1	0.0196	1
MAP3K1	Del_12q24.31	0.0196	1
PIK3CA	Del_6q27	0.0198	1
1q-Amp	Del_9p23	0.02	1
Del_5q21.3	Del_16q24.3	0.0202	1
NCOR1	6q-Del	0.0203	1
PIK3CA	Amp_11p13	0.0205	1
SPEN	Amp_8p11.23	0.0205	1
GATA3	4q-Del	0.0206	1
22q-Del	Amp_10p15.1	0.021	1
MAP3K1	Del_6q27	0.0211	1
MAP2K4	13q-Del	0.0212	1
MLL3	1p-Del	0.0215	1
PIK3CA	Amp_8p11.21	0.0217	1
CDH1	8p-Del	0.0218	1
ARID1A	TP53	0.022	1
8p-Amp	4q-Del	0.022	1
Amp_19q13.42	Del_16q24.3	0.0223	1
1q-Amp	Amp_8q24.21	0.0227	1
1q-Amp	16p-Del	0.023	1
CTCF	TP53	0.0233	1
FOXA1	Del_9p21.3	0.0237	1
NF1	8q-Amp	0.0241	1
NF1	22q-Del	0.0241	1
MAP2K4	Del_5q11.2	0.0242	1
GATA3	Amp_19q12	0.0244	1
Amp_10p15.1	Del_6q15	0.0246	1
APC	Del_22q13.32	0.0249	1
16q-Del	Amp_12p13.33	0.0252	1
Amp_1q21.3	Del_19q13.32	0.0257	1
GPRIN2	Del_11q23.3	0.0262	1
ZMYM3	Amp_11q13.3	0.0262	1
MAP3K1	Del_19q13.32	0.027	1
MAP3K1	Del_4q35.1	0.0273	1
MAP3K1	Del_15q13.1	0.0273	1
PIK3CA	Amp_20q13.2	0.0278	1
CBFB	Del_3p21.31	0.0279	1
GATA3	Del_10q26.3	0.0279	1
PIK3CA	Del_21q11.2	0.0283	1
MAP3K1	17q-Del	0.0287	1
Amp_1q21.3	Del_11p15.5	0.0288	1
PIK3CA	Del_11q25	0.0289	1
Amp_1q21.3	Del_17p12	0.0296	1
1q-Amp	1q-Del	0.0298	1
CDH1	Del_19q13.32	0.0299	1
MAP3K1	Amp_1q21.3	0.0301	1
PIK3CA	17q-Amp	0.0302	1
NF1	Del_14q24.1	0.0307	1
TBX3	Del_14q24.1	0.0307	1
TP53	Del_11q13.1	0.0307	1
Amp_3q26.32	Del_11q13.1	0.0308	1
PIK3CA	Amp_8p11.23	0.031	1
CASZ1	Del_13q14.2	0.0318	1
FRMPD2	Del_13q14.2	0.0318	1
PTEN	Amp_8q24.21	0.032	1
CDH1	Amp_6p23	0.0323	1
CDH1	Amp_8p11.21	0.0327	1
GATA3	Del_12q24.31	0.0327	1
PIK3CA	Amp_17q12	0.0327	1
Amp_1q21.3	Del_20p13	0.0328	1
CDH1	7p-Amp	0.0331	1
MAP3K1	Del_17q21.31	0.0331	1
TP53	Del_22q13.32	0.0336	1
NF1	Amp_1q21.3	0.034	1
5p-Amp	22q-Del	0.034	1
PTEN	Del_5q21.3	0.0341	1
MAP3K1	Del_5q21.3	0.0342	1
PIK3CA	Del_1p36.13	0.0342	1
Amp_1q21.3	Del_9p23	0.0344	1
CDKN1B	Amp_8q24.21	0.0345	1
MUC6	Amp_1q21.3	0.0345	1
Amp_13q34	Del_16q24.3	0.0346	1
1q-Amp	4p-Del	0.0347	1
Amp_17q12	Del_16q24.3	0.035	1
20p-Amp	16q-Del	0.0358	1
TBX3	Del_4q35.1	0.036	1
CDH1	4q-Del	0.0365	1
MLL3	22q-Del	0.0365	1
16p-Amp	14q-Del	0.0365	1
16p-Amp	17q-Del	0.0365	1
1q-Amp	Del_2q37.3	0.0369	1
NF1	Amp_8p11.23	0.0372	1
16p-Amp	Del_4p16.3	0.0374	1
1q-Amp	4q-Del	0.0375	1
TBL1XR1	TP53	0.0376	1
NCOR1	Del_9q34.2	0.0378	1
8p-Del	Amp_1p22.3	0.0378	1
Amp_17q12	Del_10q23.31	0.0379	1
CDH1	GATA3	0.038	1
MAP3K1	Amp_1q44	0.0387	1
Amp_1q44	Del_2q37.3	0.0394	1
Amp_17q12	Del_6p25.3	0.0394	1
CDH1	Del_9q21.11	0.0397	1
TBL1XR1	Del_17p12	0.0397	1
Amp_6q21	Del_6q15	0.0397	1
RB1	Del_16q24.3	0.04	1
MLL3	Del_22q13.32	0.0401	1
GATA3	Del_5q11.2	0.0407	1
MYB	Del_13q14.2	0.0415	1
PIK3CA	Del_9p23	0.0417	1
FBXW7	22q-Del	0.0421	1
Amp_1q21.3	Amp_15q26.3	0.0424	1
Amp_11q13.3	Del_5q21.3	0.0425	1
FOXA1	Del_9p23	0.0427	1
MLL3	Del_5q21.3	0.0428	1
NCOR1	Del_6p25.3	0.0431	1
MED23	TP53	0.0433	1
CDH1	Amp_11p13	0.0436	1
NF1	Del_4p16.3	0.0437	1
TBX3	Del_4p16.3	0.0437	1
CBFB	Del_18q23	0.0441	1
PIK3CA	Del_8p23.2	0.0441	1
16q-Del	Amp_10q22.3	0.0446	1
TP53	Del_11q25	0.0447	1
MYB	Del_8p23.2	0.0448	1
CBFB	Del_17q21.31	0.0453	1
SF3B1	Amp_8q24.21	0.0455	1
MLL3	15q-Del	0.0456	1
MYB	Amp_8p11.23	0.0458	1
NCOR1	Del_14q24.1	0.046	1
NCOR1	Del_6q27	0.0465	1
PTEN	Del_2q37.3	0.0472	1
16q-Del	Amp_13q34	0.0476	1
CTCF	Del_8p23.2	0.0479	1
TBX3	Amp_3q26.32	0.0481	1
1p-Del	Amp_6p23	0.049	1
8p-Del	Amp_1q21.3	0.049	1
11q-Del	Amp_3q26.32	0.0491	1
RB1	Amp_8p11.23	0.0494	1
CASZ1	Amp_8p11.21	0.05	1
NCOR1	22q-Del	0.0507	1
CDH1	Del_17q21.31	0.0511	1
MAP3K1	NCOR1	0.0513	1
16p-Amp	9q-Del	0.0514	1
17q-Amp	17q-Del	0.0518	1
1q-Amp	Amp_15q26.3	0.052	1
PIK3CA	Del_11q23.3	0.0527	1
1q-Amp	6q-Del	0.0527	1
Amp_14q21.1	Del_16q24.3	0.0527	1
16p-Amp	Del_4q35.1	0.0536	1
NLGN3	Del_13q14.2	0.0542	1
CDH1	Del_17p12	0.0545	1
MYB	Amp_11q13.3	0.0546	1
TBL1XR1	Amp_8q24.21	0.0546	1
Amp_20q13.2	Del_16q24.3	0.0548	1
Amp_1p22.3	Amp_17q12	0.0552	1
CDH1	Del_9q34.2	0.0557	1
TP53	17q-Amp	0.0558	1
MAP3K1	Del_11p15.5	0.0564	1
SPEN	Del_13q14.2	0.0566	1
16p-Amp	Del_5q21.3	0.0568	1
PIK3CA	9p-Del	0.0572	1
TBX3	Del_6q27	0.0577	1
RUNX1	8p-Del	0.0579	1
5p-Amp	Del_1p36.13	0.0579	1
TBX3	4p-Del	0.0581	1
7p-Amp	Del_6q27	0.0583	1
NCOR1	Amp_12q15	0.0584	1
16p-Amp	Del_6q27	0.0585	1
CBFB	Del_11p15.5	0.059	1
CBFB	Del_14q24.1	0.059	1
MAP3K1	11p-Del	0.0591	1
FGFR2	Amp_8p11.23	0.0593	1
FBXW7	Amp_17q12	0.0594	1
7q-Amp	Amp_17q23.1	0.0594	1
CDH1	9q-Del	0.0598	1
TBX3	18p-Del	0.06	1
PTEN	Del_12p13.1	0.0601	1
MAP3K1	16p-Del	0.0602	1
CDH1	17q-Amp	0.0603	1
CDH1	Amp_4q13.3	0.0603	1
CBFB	TP53	0.0606	1
GATA3	Amp_6p23	0.0608	1
Amp_1p22.3	Amp_11q13.3	0.0608	1
Amp_1q21.3	Amp_8p11.23	0.0608	1
NF1	Amp_8q24.21	0.0612	1
1q-Amp	Amp_11p13	0.0613	1
ERBB2	Amp_11q13.3	0.0619	1
NF1	Del_22q13.32	0.0619	1
RB1	Amp_11q13.3	0.0619	1
TBX3	Del_22q13.32	0.0619	1
1q-Amp	Del_9p21.3	0.0619	1
PIK3CA	6q-Del	0.0622	1
16q-Del	Amp_17q23.1	0.0627	1
8q-Amp	Del_17q21.31	0.0629	1
RBMX	22q-Del	0.0644	1
NCOR1	Amp_8q24.21	0.0646	1
1q-Amp	Del_22q13.32	0.0647	1
Amp_12p13.33	Del_17p12	0.065	1
TBX3	Amp_20q13.2	0.0651	1
16p-Amp	Del_12q23.1	0.0651	1
16q-Del	Amp_12q15	0.0652	1
16q-Del	Amp_14q21.1	0.0657	1
KCNN3	Del_11q25	0.066	1
16p-Amp	9p-Del	0.0661	1
SPEN	TP53	0.0667	1
Amp_11p13	Del_16q24.3	0.0667	1
PIK3CA	Amp_4q13.3	0.067	1
MYB	8p-Del	0.0671	1
TP53	Amp_17q23.1	0.0674	1
CDH1	Amp_14q21.1	0.0678	1
MLL3	Del_2q37.3	0.0679	1
MLL3	Del_6q27	0.0684	1
16q-Del	Amp_19q13.42	0.0686	1
GATA3	Amp_12p13.33	0.0687	1
SF3B1	Del_1p36.13	0.069	1
Amp_11q13.3	Del_5q11.2	0.0694	1
TBX3	20p-Amp	0.0702	1
PTEN	17q-Del	0.0706	1
GPS2	Del_13q14.2	0.0708	1
NCOR1	8q-Amp	0.0708	1
16p-Amp	4p-Del	0.0708	1
SF3B1	8q-Amp	0.071	1
Amp_8p11.21	Del_17q21.31	0.0715	1
TBX3	Del_3p21.31	0.0716	1
TBX3	Del_9p21.3	0.0716	1
C17orf95	Amp_1q21.3	0.0728	1
Amp_1q21.3	Amp_20q13.2	0.0731	1
17p-Del	Amp_12p13.33	0.0732	1
PTEN	Amp_12q15	0.0734	1
1q-Amp	Del_6q15	0.0735	1
SPEN	Del_2q37.3	0.0736	1
1q-Amp	Del_10q23.31	0.0736	1
MAP3K1	Amp_6q21	0.0738	1
Amp_1q44	Del_12p13.1	0.074	1
TP53	Del_6q27	0.0744	1
TBX3	Del_5q21.3	0.0748	1
GATA3	Amp_6q21	0.076	1
Amp_1q44	Del_8p23.2	0.076	1
CBFB	Del_8p23.2	0.0763	1
CDKN1B	Amp_8p11.23	0.0768	1
Amp_1q21.3	Del_9p21.3	0.0768	1
MAP2K4	Del_12p13.1	0.0769	1
GATA3	8p-Amp	0.0778	1
1q-Amp	Del_5q11.2	0.078	1
Amp_3q26.32	Del_6q15	0.0783	1
MED23	13q-Del	0.0785	1
CBFB	Del_4p16.3	0.0786	1
16p-Amp	Del_6q15	0.079	1
17p-Del	Amp_1q21.3	0.079	1
FGFR2	Amp_8p11.21	0.0795	1
IRS4	Del_22q13.32	0.0795	1
MAP3K1	Del_11q25	0.0795	1
MLL3	Amp_8p11.21	0.08	1
Amp_6p23	Del_16q24.3	0.0803	1
RUNX1	Amp_17q23.1	0.0804	1
16p-Amp	4q-Del	0.0804	1
CDH1	Del_12p13.1	0.0807	1
TBL1XR1	8q-Amp	0.0817	1
5p-Amp	Del_21q11.2	0.0817	1
14q-Del	Amp_19q13.42	0.0817	1
ARID1A	Del_9p21.3	0.0818	1
FGFR2	Amp_20q13.2	0.0818	1
FRMPD2	Del_11q23.3	0.0827	1
RBMX	Del_11q23.3	0.0827	1
PTEN	15q-Del	0.0828	1
PIK3CA	Del_3p21.31	0.0829	1
NCOR1	Del_22q13.32	0.0832	1
18q-Del	Amp_6q21	0.0832	1
Amp_8q24.21	Del_16q24.3	0.0833	1
MYB	Del_17p12	0.0836	1
TGS1	Del_17p12	0.0836	1
MAP3K1	Amp_13q34	0.084	1
NLGN3	8p-Del	0.0842	1
APC	Del_13q14.2	0.0843	1
CBFB	Amp_3q26.32	0.0849	1
7p-Amp	Del_12q23.1	0.0857	1
7p-Amp	Del_12q24.31	0.0857	1
ZFP36L2	1q-Amp	0.0858	1
Amp_19q13.42	Del_7q36.1	0.0859	1
Amp_17q12	Del_14q24.1	0.086	1
16p-Amp	6q-Del	0.0865	1
FOXA1	9p-Del	0.0867	1
5p-Amp	6q-Del	0.087	1
Amp_6p23	Del_1p22.1	0.087	1
FBXW7	Del_9p21.3	0.088	1
1q-Amp	Del_17q21.31	0.0889	1
TBX3	22q-Del	0.089	1
GATA3	Del_4p16.3	0.0896	1
CDH1	8p-Amp	0.0901	1
CDH1	18p-Del	0.0901	1
TBL1XR1	17p-Del	0.0901	1
17q-Amp	18p-Del	0.0905	1
MYH9	TP53	0.0914	1
SF3B1	TP53	0.0914	1
PTEN	Del_5q11.2	0.0918	1
1q-Amp	Del_20p13	0.0918	1
TAF1L	Amp_11q13.3	0.092	1
RUNX1	Amp_8p11.23	0.0924	1
CDH1	Del_18q23	0.0926	1
PTEN	Amp_1q21.3	0.0929	1
Amp_12p13.33	Del_6q15	0.0932	1
PIK3CA	Del_11q13.1	0.0935	1
17q-Del	Amp_11q13.3	0.0936	1
MED23	Amp_8q24.21	0.0937	1
17q-Amp	18q-Del	0.0938	1
18q-Del	Amp_4q13.3	0.0938	1
1q-Amp	17p-Del	0.094	1
20p-Amp	Del_22q13.32	0.094	1
CBFB	Del_10q23.31	0.0941	1
Amp_10p15.1	Del_9p23	0.0941	1
CASZ1	13q-Del	0.0942	1
FRMPD2	13q-Del	0.0942	1
1q-Amp	8p-Del	0.0942	1
CDH1	Del_14q24.1	0.0944	1
MLL3	Del_12p13.1	0.0946	1
16q-Del	Amp_17q12	0.0949	1
Amp_1q21.3	Del_10q23.31	0.0953	1
TBX3	Del_13q14.2	0.0955	1
TBX3	Del_2q37.3	0.0959	1
1q-Amp	5q-Del	0.0959	1
17q-Amp	Amp_6q21	0.0962	1
CBFB	Del_10q26.3	0.0966	1
1p-Del	Amp_19p13.12	0.0966	1
MUC6	Del_1p36.13	0.0967	1
SPEN	4q-Del	0.0969	1
7q-Amp	4q-Del	0.0969	1
HRNR	Amp_20q13.2	0.0973	1
16p-Amp	11q-Del	0.0977	1
MAP3K1	Del_5q11.2	0.0978	1
MLL3	Del_11q23.3	0.0982	1
CBFB	13q-Del	0.0983	1
CDH1	Amp_8p11.23	0.0985	1
IRS4	22q-Del	0.0985	1
CASZ1	Del_6q15	0.0989	1
FRMPD2	Del_6q15	0.0989	1
RBMX	Del_6q15	0.0989	1
CBFB	4p-Del	0.0991	1
TFE3	Del_11q23.3	0.0991	1
GATA3	Amp_11q13.3	0.0993	1
RUNX1	Del_18q23	0.0994	1
MUC6	Amp_1q44	0.1	1
16p-Amp	Del_2q37.3	0.1	1
Amp_10q22.3	Del_11q13.1	0.1	1
MLL3	11q-Del	0.101	1
6q-Del	Amp_13q34	0.101	1
CBFB	18p-Del	0.102	1
ERBB2	16p-Amp	0.102	1
EYS	Del_13q14.2	0.102	1
NCOR1	Amp_19q13.42	0.102	1
ERBB2	Amp_17q23.1	0.103	1
GPS2	Amp_20q13.2	0.103	1
NCOR1	Del_8p23.2	0.103	1
SPEN	13q-Del	0.103	1
TFE3	16q-Del	0.103	1
8q-Amp	22q-Del	0.103	1
Amp_10q22.3	Del_6q27	0.103	1
APC	Del_18q23	0.104	1
ERBB2	20q-Amp	0.104	1
MED23	Del_9p21.3	0.104	1
SPEN	17q-Del	0.104	1
1p-Del	Amp_19q12	0.105	1
8p-Del	Amp_1q44	0.105	1
IRS4	TP53	0.106	1
NLGN3	TP53	0.106	1
PIK3CA	11p-Del	0.106	1
22q-Del	Amp_3q26.32	0.106	1
Amp_1q21.3	Del_17q21.31	0.106	1
Amp_10p15.1	Del_11q23.3	0.106	1
Amp_11q13.3	Del_14q24.1	0.106	1
CASZ1	Del_6q27	0.107	1
CDH1	17q-Del	0.107	1
CDH1	Del_21q11.2	0.107	1
RBMX	Del_6q27	0.107	1
16p-Amp	11p-Del	0.107	1
20p-Amp	22q-Del	0.107	1
TGS1	Del_11q23.3	0.108	1
7q-Amp	Del_11p15.5	0.108	1
1p-Del	Amp_10q22.3	0.108	1
NCOR1	Amp_8p11.23	0.109	1
TAF1L	Del_8p23.2	0.109	1
CASZ1	Del_11q25	0.11	1
MAP2K4	Del_1p36.13	0.11	1
RUNX1	Del_9p23	0.11	1
MAP2K4	Amp_11q14.1	0.111	1
MAP3K1	Del_11q23.3	0.111	1
MLL3	Del_9q21.11	0.111	1
SPEN	Del_6q15	0.111	1
ACTL6B	PIK3CA	0.112	1
APC	Del_9p23	0.112	1
CTCF	Del_9p23	0.112	1
ERBB2	Del_4p16.3	0.112	1
ERBB2	Del_5q11.2	0.112	1
ZBTB7C	Amp_8q24.21	0.112	1
Amp_12q15	Del_16q24.3	0.112	1
MYB	13q-Del	0.113	1
MAP3K1	Amp_17q23.1	0.114	1
MAP3K1	Amp_20q13.2	0.114	1
PTEN	5q-Del	0.114	1
Amp_12p13.33	Del_6q27	0.114	1
KDM6A	Amp_8p11.23	0.115	1
TAF1L	8p-Del	0.115	1
16p-Del	Amp_20q13.2	0.115	1
1p-Del	Amp_4q13.3	0.115	1
FOXA1	Amp_6p23	0.116	1
GATA3	Del_6p25.3	0.116	1
17q-Amp	Del_5q21.3	0.116	1
RUNX1	Del_9q21.11	0.117	1
TCP11	Del_17p12	0.117	1
KDM6A	TP53	0.118	1
MAP3K1	Amp_1p22.3	0.118	1
PIK3CA	Amp_11q14.1	0.118	1
PTEN	Amp_11p13	0.118	1
ERBB2	Amp_3q26.32	0.119	1
EYS	6q-Del	0.119	1
FRMPD2	Del_8p23.2	0.119	1
MYB	Del_16q24.3	0.119	1
SPEN	15q-Del	0.119	1
SPEN	Del_20p13	0.119	1
ERBB2	Amp_8q24.21	0.12	1
17q-Amp	Del_12q24.31	0.12	1
EYS	Del_6q15	0.121	1
RUNX1	17q-Del	0.121	1
TFE3	Del_11q25	0.121	1
7p-Amp	Del_1p22.1	0.121	1
CBFB	Del_5q21.3	0.122	1
FBXW7	Del_17q21.31	0.122	1
MAP2K4	Del_4p16.3	0.122	1
MAP2K4	Del_9p21.3	0.122	1
MAP3K1	Del_13q14.2	0.123	1
PAX2	Amp_1q21.3	0.123	1
PTEN	5p-Amp	0.123	1
TBX3	4q-Del	0.123	1
TBX3	Del_9p23	0.123	1
5q-Del	Amp_1q44	0.123	1
CASZ1	11q-Del	0.124	1
CTCF	Del_19p13.3	0.124	1
FRMPD2	11q-Del	0.124	1
MLL3	Del_7q36.1	0.124	1
RBMX	11q-Del	0.124	1
SPEN	Del_15q13.1	0.124	1
7p-Amp	Amp_17q23.1	0.124	1
Amp_11q13.3	Amp_15q26.3	0.124	1
ERBB2	Amp_10p15.1	0.125	1
EYS	16q-Del	0.125	1
GPS2	Amp_17q23.1	0.125	1
PTEN	Del_22q13.32	0.125	1
6q-Del	Del_12q23.1	0.125	1
CTCF	Amp_8q24.21	0.126	1
IL1RAP	Del_22q13.32	0.126	1
MLL3	Del_1p22.1	0.126	1
PTEN	Amp_17q12	0.126	1
SPEN	Del_6q27	0.126	1
7q-Amp	Del_6q27	0.126	1
NF1	Del_9q21.11	0.127	1
NLGN3	Amp_17q12	0.127	1
PIK3CA	Del_18q23	0.127	1
TBL1XR1	Del_8p23.2	0.127	1
TBX3	Amp_12p13.33	0.127	1
CBFB	Amp_6p23	0.128	1
CTCF	Del_11p15.5	0.128	1
CTCF	Del_14q24.1	0.128	1
MYH9	Del_11p15.5	0.128	1
8q-Amp	4p-Del	0.128	1
CTCF	Amp_8p11.21	0.129	1
FBXW7	Del_9p23	0.129	1
KDM6A	Del_9p23	0.129	1
MYH9	Amp_8p11.21	0.129	1
MYH9	Del_22q13.32	0.129	1
NF1	Del_11q25	0.129	1
PIK3R1	Del_13q14.2	0.129	1
TBL1XR1	Amp_20q13.2	0.129	1
Amp_19q13.42	Del_1p36.13	0.129	1
APC	Del_11q23.3	0.13	1
ERBB2	Del_10q23.31	0.13	1
MLL3	Amp_6p23	0.13	1
PIK3CA	11q-Del	0.13	1
TAF1L	16p-Amp	0.13	1
NF1	14q-Del	0.131	1
NF1	Amp_19q12	0.131	1
NF1	Del_21q11.2	0.131	1
TBX3	14q-Del	0.131	1
1q-Amp	Del_11q23.3	0.131	1
CASZ1	Amp_8q24.21	0.132	1
SMAD2	Amp_8q24.21	0.132	1
TBL1XR1	8p-Del	0.132	1
4q-Del	Amp_11q13.3	0.132	1
ARID1A	4q-Del	0.133	1
CTCF	Amp_20q13.2	0.133	1
ERBB2	Del_10q26.3	0.133	1
GATA3	Del_10q23.31	0.133	1
PTEN	Amp_13q34	0.133	1
Amp_15q26.3	Del_16q24.3	0.133	1
KDM6A	Del_16q24.3	0.134	1
NF1	Amp_17q12	0.134	1
TP53	Amp_1q21.3	0.134	1
17q-Amp	Del_14q24.1	0.134	1
4q-Del	Amp_1q21.3	0.134	1
Amp_19q13.42	Del_4p16.3	0.134	1
FBXW7	Amp_11q13.3	0.135	1
MYB	Del_1p36.13	0.135	1
TGS1	Del_1p36.13	0.135	1
Amp_10q22.3	Del_16q24.3	0.135	1
CBFB	Del_11q25	0.136	1
ERBB2	GATA3	0.136	1
NLGN3	13q-Del	0.136	1
1q-Amp	Del_15q13.1	0.136	1
ARID1A	Del_9p23	0.137	1
MAP2K4	5q-Del	0.137	1
RUNX1	15q-Del	0.137	1
17p-Del	Amp_10q22.3	0.137	1
CBFB	Del_9p21.3	0.138	1
KRAS	Del_11q23.3	0.138	1
TCP11	Del_11q23.3	0.138	1
20q-Amp	Amp_13q34	0.138	1
14q-Del	Amp_17q12	0.138	1
CASZ1	8q-Amp	0.139	1
ERBB2	8p-Amp	0.139	1
ZFP36L2	Amp_1q44	0.139	1
Amp_1q44	Del_9p21.3	0.139	1
Amp_11p13	Del_9p23	0.139	1
CASZ1	Amp_1q44	0.14	1
FOXA1	Del_9q34.2	0.14	1
PIK3CA	Amp_19p13.12	0.14	1
PIK3R1	Amp_8p11.23	0.14	1
TGS1	Del_11q25	0.14	1
APC	Del_4q35.1	0.141	1
FBXW7	Del_19p13.3	0.141	1
KDM6A	Del_19p13.3	0.141	1
MAP2K4	Amp_10p15.1	0.141	1
MYH9	Del_4q35.1	0.141	1
16p-Amp	Del_14q24.1	0.141	1
CDH1	7q-Amp	0.142	1
GPRIN2	Del_6q15	0.142	1
NCOR1	Del_1p36.13	0.142	1
Amp_1p22.3	Del_11q23.3	0.142	1
CDH1	Amp_19p13.12	0.143	1
SMAD2	8q-Amp	0.143	1
CDH1	Del_10q23.31	0.144	1
MYB	Del_3p21.31	0.144	1
MYB	Del_9p21.3	0.144	1
Amp_11p13	Del_2q37.3	0.144	1
PTEN	Del_17q21.31	0.145	1
Amp_19q12	Del_1p36.13	0.145	1
FBXW7	Del_11p15.5	0.146	1
KDM6A	Del_14q24.1	0.146	1
SPEN	Del_4p16.3	0.146	1
SPEN	Del_5q11.2	0.146	1
TGS1	11q-Del	0.146	1
ZMYM3	Del_14q24.1	0.146	1
Amp_1q44	Del_17q21.31	0.146	1
IRS4	16q-Del	0.147	1
TBX3	Del_11p15.5	0.147	1
MAP2K4	Amp_6q21	0.148	1
MAP3K1	Del_7p22.3	0.148	1
MED23	Del_9p23	0.148	1
CBFB	Del_2q37.3	0.149	1
RUNX1	Amp_20q13.2	0.149	1
ZFP36L2	Amp_1q21.3	0.149	1
17q-Amp	7p-Amp	0.149	1
6q-Del	Del_4q35.1	0.149	1
CBFB	8p-Del	0.15	1
CTCF	20q-Amp	0.15	1
IL1RAP	22q-Del	0.15	1
MAP3K1	11q-Del	0.15	1
1q-Amp	Del_17p12	0.15	1
MAP2K4	Amp_11q13.3	0.151	1
7p-Amp	14q-Del	0.151	1
Amp_1q44	Amp_15q26.3	0.151	1
Amp_8p11.23	Amp_15q26.3	0.151	1
5p-Amp	11q-Del	0.152	1
5p-Amp	Del_2q37.3	0.152	1
16q-Del	Del_10q23.31	0.152	1
CBFB	11p-Del	0.153	1
CBFB	Del_9q34.2	0.153	1
MAP2K4	Del_10q26.3	0.153	1
MAP3K1	Del_18q23	0.153	1
RUNX1	8q-Amp	0.153	1
TAF1L	Amp_1p22.3	0.153	1
Amp_1q44	Amp_8q24.21	0.153	1
CASZ1	Amp_1q21.3	0.154	1
CDH1	Del_22q13.32	0.154	1
MLL3	Del_14q24.1	0.154	1
PTEN	Del_6q15	0.154	1
16p-Amp	Del_3p21.31	0.154	1
16p-Amp	Del_9p21.3	0.154	1
17q-Amp	Del_2q37.3	0.154	1
Amp_1q44	Del_9p23	0.154	1
ACTL6B	Amp_1q21.3	0.155	1
ARID1A	Del_19p13.3	0.155	1
CDH1	CTCF	0.155	1
1q-Amp	Del_19q13.32	0.155	1
Amp_11q14.1	Del_12p13.1	0.155	1
ERBB2	20p-Amp	0.156	1
GATA3	Del_6q27	0.156	1
GPS2	1q-Amp	0.156	1
NCOR1	7p-Amp	0.156	1
RB1	Del_11q13.1	0.156	1
5q-Del	Del_16q24.3	0.156	1
HRNR	Amp_6q21	0.157	1
HRNR	Amp_19q13.42	0.157	1
MAP3K1	Del_6q15	0.157	1
SPEN	Amp_17q23.1	0.157	1
TFE3	Del_13q14.2	0.157	1
ZNF362	Del_16q24.3	0.157	1
Amp_4q13.3	Del_22q13.32	0.157	1
APC	Del_4p16.3	0.158	1
MAP2K4	4p-Del	0.158	1
MYH9	Del_4p16.3	0.158	1
MYH9	Del_5q11.2	0.158	1
ARID1A	Del_20p13	0.159	1
TPP2	Del_22q13.32	0.159	1
5p-Amp	11p-Del	0.159	1
CASZ1	Del_18q23	0.16	1
FRMPD2	Del_18q23	0.16	1
GPRIN2	Del_1p36.13	0.16	1
IRS4	Del_1p36.13	0.16	1
NLGN3	Del_1p36.13	0.16	1
14q-Del	Amp_11q13.3	0.16	1
MYH9	Del_1p22.1	0.161	1
Amp_19p13.12	Del_16q24.3	0.161	1
CDH1	Del_6q15	0.162	1
FRMPD2	Del_17q21.31	0.162	1
RBMX	Del_17q21.31	0.162	1
RUNX1	20q-Amp	0.162	1
RUNX1	Amp_11q14.1	0.162	1
SPEN	Amp_1p22.3	0.162	1
APC	22q-Del	0.163	1
ERBB2	Del_5q21.3	0.163	1
EYS	Amp_8p11.21	0.163	1
EYS	Del_22q13.32	0.163	1
GPS2	13q-Del	0.163	1
IRS4	Del_16q24.3	0.163	1
MYH9	22q-Del	0.163	1
KRAS	Del_11q25	0.164	1
TCP11	Del_11q25	0.164	1
Amp_8p11.21	Amp_15q26.3	0.164	1
FBXW7	16p-Amp	0.166	1
KDM6A	16p-Amp	0.166	1
MED23	Del_11p15.5	0.166	1
MUC6	Del_11p15.5	0.166	1
NF1	Del_4q35.1	0.166	1
SMAD2	Amp_8p11.23	0.166	1
TBX3	Del_15q13.1	0.166	1
1q-Amp	Amp_13q34	0.166	1
CTCF	Amp_3q26.32	0.167	1
GATA3	14q-Del	0.167	1
MLL3	Del_7p22.3	0.167	1
TBX3	Amp_15q26.3	0.167	1
16p-Amp	Amp_17q23.1	0.167	1
CDH1	Amp_10q22.3	0.168	1
FOXA1	4q-Del	0.168	1
Amp_3q26.32	Del_6q27	0.168	1
GPRIN2	Del_3p21.31	0.169	1
IRS4	Del_9p21.3	0.169	1
MUC6	1q-Amp	0.169	1
Amp_4q13.3	Amp_19p13.12	0.169	1
MAP3K1	6q-Del	0.17	1
RBMX	Del_9p23	0.17	1
Amp_1q44	Amp_12q15	0.17	1
CTCF	Amp_1p22.3	0.171	1
GATA3	Del_7p22.3	0.171	1
GPRIN2	11q-Del	0.171	1
IRS4	11q-Del	0.171	1
APC	Del_11q25	0.172	1
GATA3	Del_11p15.5	0.172	1
FOXA1	Del_9q21.11	0.173	1
PIK3CA	Del_4q35.1	0.173	1
20p-Amp	Del_12p13.1	0.173	1
SF3B1	Amp_10p15.1	0.174	1
PTEN	Del_19q13.32	0.175	1
GATA3	Amp_11p13	0.176	1
GPRIN2	Del_11q25	0.176	1
FOXA1	Del_21q11.2	0.177	1
GATA3	Del_1p22.1	0.177	1
MLL3	Amp_15q26.3	0.177	1
NCOR1	Amp_8p11.21	0.177	1
PTEN	22q-Del	0.177	1
20q-Amp	16q-Del	0.177	1
KDM6A	Del_5q11.2	0.178	1
ZMYM3	Del_5q11.2	0.178	1
11q-Del	Amp_10p15.1	0.178	1
MAP3K1	Del_9p23	0.179	1
MLL3	11p-Del	0.179	1
MLL3	Del_9q34.2	0.179	1
6q-Del	Amp_12p13.33	0.179	1
APC	Del_10q23.31	0.18	1
EYS	Amp_1q21.3	0.18	1
MYH9	Del_10q23.31	0.18	1
CDKN1B	Del_11q23.3	0.181	1
FBXW7	Del_1p22.1	0.181	1
1q-Amp	Del_11q13.1	0.181	1
16q-Del	Amp_11p13	0.181	1
ARID1A	Del_4q35.1	0.182	1
CBFB	MAP3K1	0.182	1
CBFB	4q-Del	0.182	1
RUNX1	Amp_11p13	0.182	1
MYB	Amp_8q24.21	0.183	1
20p-Amp	Del_19q13.32	0.183	1
5p-Amp	Del_6q15	0.183	1
APC	9p-Del	0.184	1
CTCF	9p-Del	0.184	1
MYH9	9p-Del	0.184	1
PIK3CA	7q-Amp	0.184	1
RAB42	Del_8p23.2	0.184	1
RB1	16q-Del	0.184	1
ZBTB7C	Del_8p23.2	0.184	1
ZFP36L2	Amp_11q13.3	0.184	1
MLL3	8p-Amp	0.185	1
MLL3	18p-Del	0.185	1
NCOR1	Del_13q14.2	0.185	1
SPEN	4p-Del	0.185	1
7q-Amp	4p-Del	0.185	1
CBFB	Amp_12p13.33	0.186	1
CBFB	Del_9q21.11	0.186	1
GATA3	Del_13q14.2	0.186	1
NF1	Del_11q23.3	0.186	1
TBX3	Del_11q23.3	0.186	1
TPP2	22q-Del	0.186	1
APC	4p-Del	0.187	1
CTCF	GATA3	0.187	1
MLL3	Del_15q13.1	0.187	1
MYH9	4p-Del	0.187	1
PIK3CA	18q-Del	0.187	1
PIK3R1	16p-Amp	0.187	1
SF3B1	4p-Del	0.187	1
RUNX1	5p-Amp	0.188	1
RUNX1	Amp_6q21	0.188	1
RUNX1	Amp_19q13.42	0.188	1
TBX3	5q-Del	0.188	1
Amp_4q13.3	Del_12p13.1	0.188	1
FRMPD2	Del_11p15.5	0.189	1
FRMPD2	Del_14q24.1	0.189	1
MAP3K1	Amp_10q22.3	0.189	1
MYB	17p-Del	0.189	1
PTPN22	Del_1p36.13	0.189	1
RBMX	Del_14q24.1	0.189	1
RUNX1	Del_9p21.3	0.189	1
SP3	8q-Amp	0.189	1
TGS1	17p-Del	0.189	1
CDH1	22q-Del	0.19	1
MED23	Amp_20q13.2	0.19	1
MUC6	Amp_20q13.2	0.19	1
7q-Amp	18p-Del	0.19	1
APC	18p-Del	0.191	1
CBFB	14q-Del	0.191	1
CBFB	17q-Del	0.191	1
CBFB	Amp_19q12	0.191	1
KDM6A	Amp_1p22.3	0.191	1
MYH9	8p-Amp	0.191	1
MYH9	18p-Del	0.191	1
NF1	Del_5q11.2	0.191	1
SF3B1	8p-Amp	0.191	1
TBX3	Del_5q11.2	0.191	1
5p-Amp	Del_11p15.5	0.191	1
CDC42EP1	Del_11q23.3	0.192	1
NBPF9	Del_11q23.3	0.192	1
NCOR1	Amp_10q22.3	0.193	1
NF1	Del_1p36.13	0.193	1
8p-Amp	Del_17q21.31	0.193	1
APC	18q-Del	0.194	1
MLL3	Del_17q21.31	0.194	1
MYH9	18q-Del	0.194	1
TBX3	Amp_11p13	0.194	1
8q-Amp	Del_3p21.31	0.194	1
18p-Del	Amp_6q21	0.194	1
9p-Del	Amp_1p22.3	0.194	1
Amp_17q23.1	Del_16q24.3	0.194	1
MYB	Del_9p23	0.195	1
Amp_1p22.3	Amp_17q23.1	0.195	1
CDH1	MUC6	0.196	1
IL1RAP	13q-Del	0.196	1
EYS	4q-Del	0.197	1
FOXA1	15q-Del	0.197	1
FOXA1	9q-Del	0.197	1
MAP2K4	Del_5q21.3	0.197	1
RBMX	Amp_11q13.3	0.197	1
1q-Amp	Amp_12p13.33	0.197	1
MLL3	Del_6q15	0.198	1
RUNX1	Amp_10p15.1	0.198	1
SF3B1	6q-Del	0.198	1
CDKN1B	Del_9p21.3	0.199	1
16p-Amp	Del_13q14.2	0.199	1
20q-Amp	Amp_1q21.3	0.199	1
ARID1A	5q-Del	0.2	1
FRMPD2	Del_17p12	0.2	1
MAP3K1	Amp_11p13	0.2	1
MED23	Del_5q11.2	0.2	1
MED23	Del_11q23.3	0.2	1
MLL3	Amp_8p11.23	0.2	1
NF1	5p-Amp	0.2	1
NF1	Amp_19q13.42	0.2	1
SMAD2	Amp_8p11.21	0.2	1
SPEN	6q-Del	0.2	1
1q-Amp	Del_11q25	0.2	1
11p-Del	Amp_14q21.1	0.2	1
Amp_14q21.1	Del_9q34.2	0.2	1
CDKN1B	11q-Del	0.201	1
MAP3K1	Amp_4q13.3	0.201	1
PTPN22	11q-Del	0.201	1
ZMYM3	Del_10q23.31	0.201	1
22q-Del	Amp_10q22.3	0.201	1
CDH1	Del_6q27	0.202	1
HRNR	Del_8p23.2	0.202	1
KRAS	Amp_8q24.21	0.202	1
SP3	Amp_8q24.21	0.202	1
TCP11	17p-Del	0.202	1
MAP2K4	Del_19q13.32	0.203	1
1q-Amp	Del_7p22.3	0.203	1
CASZ1	Del_4q35.1	0.204	1
CASZ1	Del_15q13.1	0.204	1
FBXW7	9p-Del	0.204	1
KDM6A	9p-Del	0.204	1
SMAD2	Amp_20q13.2	0.204	1
9p-Del	Amp_10p15.1	0.204	1
KRAS	Del_13q14.2	0.205	1
PTEN	Amp_11q13.3	0.205	1
TAF1L	Amp_6p23	0.205	1
TCP11	Del_13q14.2	0.205	1
16q-Del	Amp_4q13.3	0.205	1
Amp_19q13.42	Del_12q23.1	0.205	1
Amp_19q13.42	Del_12q24.31	0.205	1
MAP2K4	Del_9p23	0.206	1
PAX2	PIK3CA	0.206	1
ARID1A	Del_4p16.3	0.208	1
17q-Amp	Amp_12p13.33	0.208	1
Amp_3p25.1	Del_11q13.1	0.208	1
AQP12A	Amp_1q44	0.209	1
CBFB	Del_9p23	0.209	1
CTCF	20p-Amp	0.209	1
FOXA1	Del_19p13.3	0.209	1
KDM6A	Del_11q25	0.209	1
MYB	Del_19p13.3	0.209	1
NLGN3	Del_8p23.2	0.209	1
TGS1	Del_19p13.3	0.209	1
16p-Amp	Del_19p13.3	0.209	1
5p-Amp	Del_16q24.3	0.209	1
6q-Del	Amp_6q21	0.209	1
Amp_1p22.3	Amp_4q13.3	0.209	1
Amp_6q21	Del_16q24.3	0.209	1
MLL3	Amp_10q22.3	0.21	1
MUC6	Amp_3q26.32	0.21	1
CBFB	9q-Del	0.211	1
MAP3K1	Amp_19q13.42	0.211	1
ARID1A	Amp_6q21	0.212	1
CBFB	Del_13q14.2	0.212	1
GPRIN2	Del_18q23	0.212	1
RUNX1	9p-Del	0.212	1
16p-Amp	8p-Del	0.213	1
NF1	11q-Del	0.214	1
PIK3CA	17q-Del	0.214	1
SPEN	Amp_8q24.21	0.214	1
KRAS	Amp_8p11.23	0.215	1
MAP3K1	Del_1p36.13	0.215	1
MLL3	5q-Del	0.215	1
SP3	Amp_8p11.23	0.215	1
17q-Amp	14q-Del	0.215	1
Amp_12p13.33	Amp_17q12	0.215	1
CBFB	Del_11q23.3	0.216	1
CTCF	8q-Amp	0.216	1
RUNX1	Del_17p12	0.216	1
Amp_13q34	Del_12p13.1	0.216	1
FOXA1	Del_14q24.1	0.217	1
MUC6	Amp_10p15.1	0.217	1
MYH9	Del_5q21.3	0.217	1
9p-Del	Amp_1q21.3	0.217	1
Amp_12p13.33	Del_1p22.1	0.217	1
FOXA1	Amp_15q26.3	0.218	1
MAP2K4	Amp_3p25.1	0.218	1
MAP2K4	Del_7p22.3	0.218	1
PTEN	8q-Amp	0.218	1
1q-Amp	Del_6q27	0.218	1
20p-Amp	Del_16q24.3	0.218	1
FBXW7	6q-Del	0.219	1
1q-Amp	17q-Del	0.219	1
Amp_1p22.3	Amp_15q26.3	0.219	1
NCOR1	13q-Del	0.22	1
NCOR1	Amp_12p13.33	0.22	1
RB1	Amp_8p11.21	0.22	1
RBMX	Del_22q13.32	0.22	1
16p-Amp	Del_19q13.32	0.22	1
7q-Amp	Amp_17q12	0.22	1
8q-Amp	Del_22q13.32	0.22	1
Amp_1p22.3	Del_17q21.31	0.221	1
AQP12A	Amp_1q21.3	0.222	1
CDC42EP1	Del_11q25	0.222	1
CDKN1B	Del_11q25	0.222	1
NBPF9	Del_11q25	0.222	1
PTPN22	Del_11q25	0.222	1
RUFY1	Amp_1q21.3	0.222	1
SP3	Amp_1q21.3	0.222	1
Amp_4q13.3	Del_7q36.1	0.222	1
HRNR	8p-Del	0.223	1
IRS4	Del_9p23	0.223	1
ZFP36L1	Amp_17q12	0.223	1
1p-Del	Del_6p25.3	0.223	1
Amp_1q44	Del_6q15	0.223	1
Amp_14q21.1	Del_6p25.3	0.223	1
Amp_17q12	Del_12q24.31	0.223	1
CASZ1	Del_4p16.3	0.224	1
CBFB	Amp_8q24.21	0.224	1
FRMPD2	Del_4p16.3	0.224	1
GATA3	Amp_17q12	0.224	1
18p-Del	Amp_10p15.1	0.224	1
GATA3	Amp_10q22.3	0.225	1
SPEN	Del_19q13.32	0.225	1
TBX3	1p-Del	0.225	1
TBX3	Del_10q23.31	0.225	1
7q-Amp	Del_19q13.32	0.225	1
14q-Del	Amp_17q23.1	0.225	1
CDH1	Amp_12q15	0.226	1
CDH1	Del_7q36.1	0.226	1
ERBB2	Amp_20q13.2	0.226	1
PTEN	Del_6p25.3	0.226	1
RB1	Amp_20q13.2	0.226	1
17q-Amp	Del_18q23	0.226	1
20q-Amp	Del_19q13.32	0.226	1
6q-Del	Amp_3q26.32	0.226	1
MED23	9p-Del	0.227	1
NCOR1	14q-Del	0.227	1
NCOR1	Del_21q11.2	0.227	1
17q-Amp	Del_10q23.31	0.227	1
1q-Amp	22q-Del	0.227	1
8p-Amp	Del_4q35.1	0.227	1
16q-Del	Amp_6p23	0.227	1
FRMPD2	Del_1p22.1	0.228	1
1q-Amp	9q-Del	0.228	1
CDH1	11p-Del	0.229	1
GATA3	Amp_8p11.23	0.229	1
PTEN	Amp_4q13.3	0.229	1
SPEN	Del_17q21.31	0.229	1
16p-Amp	Del_11p15.5	0.229	1
7q-Amp	Del_17q21.31	0.229	1
15q-Del	Amp_11q13.3	0.229	1
16q-Del	Del_4p16.3	0.229	1
APC	13q-Del	0.23	1
CBFB	Del_19p13.3	0.23	1
MAP3K1	RB1	0.23	1
MYH9	13q-Del	0.23	1
TBX3	9p-Del	0.23	1
TBX3	Del_10q26.3	0.23	1
Amp_11q13.3	Del_15q13.1	0.23	1
ERBB2	Del_11q25	0.231	1
FBXW7	Del_11q13.1	0.231	1
FRMPD2	8p-Del	0.231	1
GATA3	MED23	0.231	1
GATA3	PIK3R1	0.231	1
MED23	Amp_17q23.1	0.231	1
MYB	Del_4q35.1	0.231	1
MYB	Del_15q13.1	0.231	1
TGS1	Del_15q13.1	0.231	1
ZMYM3	Del_11q13.1	0.231	1
17q-Amp	Del_17q21.31	0.231	1
APC	TP53	0.232	1
CDH1	17p-Del	0.232	1
NCOR1	TP53	0.232	1
NF1	Del_8p23.2	0.232	1
NF1	Del_12q23.1	0.232	1
NF1	Del_12q24.31	0.232	1
PIK3CA	15q-Del	0.232	1
SPEN	Del_22q13.32	0.232	1
TBX3	Del_8p23.2	0.232	1
TBX3	Del_12q23.1	0.232	1
TBX3	Del_12q24.31	0.232	1
VCPIP1	Del_11q23.3	0.232	1
5p-Amp	Del_11q13.1	0.232	1
ARID1A	Amp_10p15.1	0.233	1
CBFB	Amp_15q26.3	0.233	1
CDH1	16p-Amp	0.233	1
ERBB2	8p-Del	0.233	1
RB1	8p-Del	0.233	1
TBX3	Amp_8q24.21	0.233	1
MAP2K4	Amp_19p13.12	0.234	1
MLL3	Del_4p16.3	0.234	1
SF3B1	Del_16q24.3	0.234	1
4q-Del	Amp_8p11.23	0.234	1
ERBB2	Amp_12p13.33	0.235	1
KRAS	Amp_11q13.3	0.235	1
MUC6	8p-Amp	0.235	1
MUC6	18p-Del	0.235	1
NF1	4p-Del	0.235	1
PIK3R1	8p-Amp	0.235	1
RUFY1	Amp_11q13.3	0.235	1
18q-Del	Amp_10p15.1	0.235	1
GPRIN2	Del_13q14.2	0.236	1
KCNN3	11q-Del	0.236	1
TBX3	Amp_8p11.23	0.236	1
VCPIP1	11q-Del	0.236	1
5p-Amp	Del_7q36.1	0.237	1
22q-Del	Amp_11p13	0.237	1
CASZ1	Amp_1p22.3	0.238	1
NF1	TP53	0.238	1
PIK3CA	Amp_6q21	0.238	1
TBX3	TP53	0.238	1
TGS1	16p-Amp	0.238	1
20p-Amp	Del_14q24.1	0.238	1
IRS4	Del_19p13.3	0.239	1
MED23	Amp_1q44	0.239	1
NCDN	Del_17p12	0.239	1
NLGN3	Del_19p13.3	0.239	1
SF3B1	17p-Del	0.239	1
SPEN	Del_8p23.2	0.239	1
TP53	Amp_11q13.3	0.239	1
APC	Del_6q15	0.24	1
ERBB2	17q-Del	0.24	1
ERBB2	Amp_19q12	0.24	1
ERBB2	Del_21q11.2	0.24	1
FOXA1	Del_4q35.1	0.24	1
FOXA1	Del_15q13.1	0.24	1
KCNN3	16q-Del	0.24	1
MYH9	Del_6q15	0.24	1
SPEN	Amp_3p25.1	0.24	1
SPEN	Del_7p22.3	0.24	1
17p-Del	Amp_1p22.3	0.24	1
MYB	Amp_11q14.1	0.241	1
NF1	8p-Amp	0.241	1
TGS1	Amp_11q14.1	0.241	1
MAP3K1	Amp_12q15	0.242	1
MAP3K1	Del_7q36.1	0.242	1
SMAD2	Del_8p23.2	0.242	1
USP36	Del_6q15	0.242	1
1p-Del	Del_12q24.31	0.242	1
Amp_14q21.1	Del_12q23.1	0.242	1
Amp_14q21.1	Del_12q24.31	0.242	1
MUC6	6q-Del	0.243	1
NCOR1	Del_10q23.31	0.243	1
TAF1L	Amp_1q21.3	0.243	1
ACTL6B	Del_18q23	0.244	1
ARID1A	Del_12q23.1	0.245	1
FGFR2	Del_11p15.5	0.245	1
GPRIN2	Del_14q24.1	0.245	1
IRS4	Del_11p15.5	0.245	1
IRS4	Del_14q24.1	0.245	1
MAP3K1	Del_3p21.31	0.245	1
MAP3K1	Del_9p21.3	0.245	1
MYH9	Del_13q14.2	0.245	1
NLGN3	Del_11p15.5	0.245	1
NLGN3	Del_14q24.1	0.245	1
PIK3CA	4q-Del	0.245	1
RB1	Amp_12q15	0.245	1
SPEN	Del_9p23	0.245	1
6q-Del	Amp_10q22.3	0.245	1
KDM6A	Amp_17q12	0.246	1
TBX3	18q-Del	0.246	1
TP53	ZFP36L1	0.246	1
6q-Del	Amp_10p15.1	0.246	1
CDKN1B	Del_17q21.31	0.247	1
KDM6A	Amp_6p23	0.247	1
FGFR2	Amp_8q24.21	0.248	1
IRS4	Amp_8q24.21	0.248	1
NLGN3	Amp_8q24.21	0.248	1
1q-Amp	Amp_11q14.1	0.248	1
1q-Amp	Del_6p25.3	0.248	1
Amp_11p13	Del_9p21.3	0.248	1
Amp_19q13.42	Del_5q21.3	0.248	1
ARID1A	9p-Del	0.249	1
SPEN	8p-Del	0.249	1
NCOR1	9p-Del	0.25	1
PTEN	1q-Amp	0.25	1
RUNX1	20p-Amp	0.25	1
16q-Del	5q-Del	0.25	1
MAP2K4	11p-Del	0.251	1
MAP2K4	Del_9q34.2	0.251	1
RUNX1	Amp_11q13.3	0.251	1
SF3B1	Del_2q37.3	0.251	1
AQP12A	Amp_8p11.21	0.252	1
KRAS	Amp_8p11.21	0.252	1
KRAS	Del_22q13.32	0.252	1
MYB	Del_4p16.3	0.252	1
MYB	Del_5q11.2	0.252	1
SP3	Amp_8p11.21	0.252	1
TBX3	6q-Del	0.252	1
TCP11	Del_22q13.32	0.252	1
TGS1	Del_4p16.3	0.252	1
TGS1	Del_5q11.2	0.252	1
17q-Del	Amp_19q12	0.252	1
GATA3	Del_12q23.1	0.253	1
ARID1A	4p-Del	0.254	1
FOXA1	Amp_6q21	0.254	1
TPP2	Del_6q27	0.254	1
9q-Del	Amp_11p13	0.254	1
MED23	20p-Amp	0.255	1
MUC6	Del_11q13.1	0.255	1
MYB	Del_1p22.1	0.255	1
16p-Amp	Del_1p22.1	0.255	1
8q-Amp	Del_18q23	0.255	1
APC	Del_9q34.2	0.256	1
CDKN1B	Del_9p23	0.256	1
GATA3	4p-Del	0.256	1
KRAS	Amp_20q13.2	0.256	1
MLL3	Del_19p13.3	0.256	1
MYH9	11p-Del	0.256	1
MYH9	Del_9q34.2	0.256	1
PTPN22	Del_9p23	0.256	1
SF3B1	Del_9q34.2	0.256	1
1q-Amp	9p-Del	0.256	1
1q-Amp	Del_10q26.3	0.256	1
8q-Amp	9q-Del	0.256	1
17q-Del	Amp_1p22.3	0.256	1
Amp_1q44	Amp_19q13.42	0.256	1
CASZ1	GATA3	0.257	1
CASZ1	4p-Del	0.257	1
CBFB	5q-Del	0.257	1
FRMPD2	4p-Del	0.257	1
MAP3K1	Amp_14q21.1	0.257	1
NCOR1	9q-Del	0.257	1
RUNX1	7p-Amp	0.257	1
SPEN	Amp_19p13.12	0.257	1
Amp_3q26.32	Del_11q23.3	0.257	1
Amp_10q22.3	Del_22q13.32	0.257	1
Amp_11p13	Del_22q13.32	0.258	1
1q-Amp	Del_4q35.1	0.259	1
IRS4	Amp_1q44	0.26	1
MAP2K4	Amp_4q13.3	0.26	1
MED23	Amp_1q21.3	0.26	1
NLGN3	Amp_1q44	0.26	1
CASZ1	18p-Del	0.261	1
CDKN1B	8q-Amp	0.261	1
FRMPD2	18p-Del	0.261	1
GPRIN2	Del_15q13.1	0.261	1
GPS2	8q-Amp	0.261	1
IRS4	Del_4q35.1	0.261	1
NLGN3	Del_4q35.1	0.261	1
RBMX	18p-Del	0.261	1
1q-Amp	Amp_19p13.12	0.261	1
6q-Del	Amp_4q13.3	0.261	1
ERBB2	Del_20p13	0.262	1
MLL3	16p-Del	0.262	1
MLL3	Del_1p36.13	0.262	1
TBX3	Del_19q13.32	0.262	1
TGS1	Amp_3q26.32	0.262	1
CBFB	Del_4q35.1	0.263	1
CBFB	Del_15q13.1	0.263	1
FRMPD2	22q-Del	0.263	1
NCOR1	8p-Amp	0.263	1
NCOR1	18p-Del	0.263	1
14q-Del	Amp_12q15	0.263	1
CBFB	Amp_11p13	0.264	1
CTCF	Amp_8p11.23	0.264	1
MYH9	Amp_8p11.23	0.264	1
TPP2	Del_1p36.13	0.264	1
USP36	Del_1p36.13	0.264	1
CASZ1	18q-Del	0.265	1
FRMPD2	18q-Del	0.265	1
PTEN	8p-Del	0.265	1
RBMX	18q-Del	0.265	1
5p-Amp	Amp_6p23	0.265	1
CDH1	15q-Del	0.266	1
ERBB2	Del_18q23	0.266	1
HRNR	Amp_8p11.23	0.266	1
HRNR	Del_11q25	0.266	1
MYB	Amp_20q13.2	0.266	1
5p-Amp	Del_3p21.31	0.266	1
EYS	Amp_8p11.23	0.267	1
FGFR2	16p-Amp	0.268	1
FOXA1	Amp_13q34	0.268	1
CASZ1	6q-Del	0.269	1
FRMPD2	6q-Del	0.269	1
MLL3	Amp_1p22.3	0.269	1
MYH9	Amp_8q24.21	0.269	1
PTEN	Amp_3q26.32	0.269	1
PTEN	Amp_19q12	0.269	1
PTEN	Del_21q11.2	0.269	1
RBMX	6q-Del	0.269	1
5p-Amp	Del_7p22.3	0.269	1
CBFB	5p-Amp	0.27	1
CBFB	Amp_6q21	0.27	1
CBFB	Amp_19q13.42	0.27	1
ERBB2	Del_17q21.31	0.27	1
FOXA1	Del_4p16.3	0.27	1
FOXA1	Del_5q11.2	0.27	1
RUNX1	Amp_17q12	0.27	1
SF3B1	Del_6p25.3	0.27	1
TBX3	7p-Amp	0.27	1
TGS1	Amp_10p15.1	0.27	1
Amp_6q21	Amp_8p11.23	0.27	1
MAP2K4	Del_4q35.1	0.271	1
17p-Del	Amp_1q44	0.271	1
APC	Del_1p36.13	0.272	1
CDKN1B	Del_8p23.2	0.272	1
FGFR2	20q-Amp	0.272	1
GPRIN2	20q-Amp	0.272	1
GPS2	Del_8p23.2	0.272	1
MYH9	Del_1p36.13	0.272	1
NLGN3	Amp_11q14.1	0.272	1
SPEN	Del_19p13.3	0.272	1
CDH1	Del_7p22.3	0.273	1
FBXW7	Del_6q15	0.273	1
HRNR	22q-Del	0.273	1
KDM6A	Del_6q15	0.273	1
CBFB	Amp_11q13.3	0.274	1
FOXA1	Del_6q27	0.274	1
TAF1L	Amp_12p13.33	0.274	1
ZMYM3	Del_2q37.3	0.274	1
ZNF362	16q-Del	0.274	1
17q-Amp	17p-Del	0.274	1
SPEN	Amp_10q22.3	0.275	1
TPP2	Del_3p21.31	0.275	1
USP36	Del_9p21.3	0.275	1
20q-Amp	Del_12p13.1	0.275	1
14q-Del	Amp_14q21.1	0.275	1
MAP3K1	15q-Del	0.276	1
MAP3K1	Del_20p13	0.276	1
PIK3CA	SMAD4	0.276	1
PTEN	Del_7q36.1	0.276	1
GATA3	MAP3K1	0.277	1
MAP3K1	4p-Del	0.277	1
Amp_19q12	Del_9p21.3	0.277	1
C17orf95	Amp_8p11.23	0.278	1
CBFB	Amp_11q14.1	0.278	1
MYB	Del_10q23.31	0.278	1
NF1	Amp_3p25.1	0.278	1
NF1	Del_7p22.3	0.278	1
TBX3	Del_7p22.3	0.278	1
7q-Amp	Del_2q37.3	0.278	1
CDH1	NLGN3	0.279	1
CDKN1B	Del_14q24.1	0.279	1
FBXW7	11p-Del	0.279	1
FBXW7	Del_9q34.2	0.279	1
GPS2	Del_11p15.5	0.279	1
KDM6A	Del_9q34.2	0.279	1
MUC6	PIK3CA	0.279	1
PIK3CA	PIK3R1	0.279	1
TAF1L	Del_21q11.2	0.279	1
ZMYM3	11p-Del	0.279	1
ZMYM3	Del_9q34.2	0.279	1
Amp_19q13.42	Del_1p22.1	0.279	1
FRMPD2	Del_11q13.1	0.281	1
MYB	9p-Del	0.281	1
MYB	Del_10q26.3	0.281	1
NF1	Del_5q21.3	0.281	1
TBL1XR1	Del_18q23	0.281	1
5p-Amp	Del_11q23.3	0.281	1
FOXA1	1p-Del	0.282	1
GPRIN2	Del_4p16.3	0.282	1
GPRIN2	Del_5q11.2	0.282	1
IRS4	Del_5q11.2	0.282	1
MED23	Amp_17q12	0.282	1
NF1	Amp_11q13.3	0.282	1
NLGN3	Del_4p16.3	0.282	1
NLGN3	Del_5q11.2	0.282	1
RUNX1	Amp_19p13.12	0.282	1
TFE3	13q-Del	0.282	1
APC	Amp_1q44	0.283	1
ARID1A	7p-Amp	0.283	1
CTCF	Amp_1q44	0.283	1
FOXA1	Amp_20q13.2	0.283	1
HRNR	Amp_17q23.1	0.283	1
KRAS	Del_16q24.3	0.283	1
CBFB	Amp_13q34	0.284	1
KRAS	22q-Del	0.284	1
SPEN	Del_14q24.1	0.284	1
TCP11	22q-Del	0.284	1
17q-Amp	7q-Amp	0.284	1
7q-Amp	Amp_4q13.3	0.284	1
Amp_1p22.3	Del_17p12	0.284	1
ERBB2	Amp_15q26.3	0.285	1
FOXA1	Amp_3q26.32	0.285	1
GATA3	MYB	0.285	1
MYB	4p-Del	0.285	1
TAF1L	Amp_12q15	0.285	1
TGS1	4p-Del	0.285	1
FGFR2	Del_1p22.1	0.286	1
IRS4	Del_1p22.1	0.286	1
NLGN3	Del_1p22.1	0.286	1
16p-Amp	Amp_19p13.12	0.286	1
5p-Amp	13q-Del	0.286	1
APC	Del_9p21.3	0.287	1
CDKN1B	Del_13q14.2	0.287	1
CTCF	Del_9p21.3	0.287	1
EYS	Del_16q24.3	0.287	1
MYH9	Del_9p21.3	0.287	1
6q-Del	Amp_15q26.3	0.287	1
ICOSLG	Amp_17q23.1	0.288	1
KRAS	Amp_17q23.1	0.288	1
RUFY1	Amp_17q23.1	0.288	1
ZMYM3	Del_13q14.2	0.288	1
17q-Amp	Del_3p21.31	0.288	1
Amp_13q34	Del_7p22.3	0.288	1
Amp_19q12	Del_12q24.31	0.288	1
ARID1A	Del_11q13.1	0.289	1
MYB	18p-Del	0.289	1
PIK3CA	Del_17p12	0.289	1
RUNX1	Del_11q23.3	0.289	1
SMAD2	Del_6q15	0.289	1
8p-Amp	Del_18q23	0.289	1
8q-Amp	18p-Del	0.289	1
CASZ1	Del_5q21.3	0.29	1
PTEN	Del_8p23.2	0.29	1
1q-Amp	Del_1p36.13	0.29	1
Amp_1q21.3	Amp_12q15	0.29	1
APC	11q-Del	0.291	1
APC	4q-Del	0.291	1
FBXW7	Del_6q27	0.291	1
MYH9	4q-Del	0.291	1
RUNX1	Amp_8p11.21	0.291	1
SF3B1	4q-Del	0.291	1
TBX3	Del_18q23	0.291	1
ZMYM3	Del_6q27	0.291	1
CDH1	18q-Del	0.292	1
GATA3	16p-Del	0.292	1
5p-Amp	Del_11q25	0.292	1
Amp_13q34	Amp_17q12	0.292	1
MYB	18q-Del	0.293	1
NCOR1	7q-Amp	0.293	1
5q-Del	Amp_11q13.3	0.293	1
Amp_19q12	Del_6q15	0.293	1
GPRIN2	Amp_3q26.32	0.294	1
IL1RAP	Del_9p23	0.294	1
TBL1XR1	Del_9p23	0.294	1
ZMYM3	Del_6p25.3	0.294	1
17q-Del	Amp_1q44	0.294	1
9p-Del	Amp_19q12	0.294	1
Amp_4q13.3	Del_14q24.1	0.294	1
Amp_8p11.23	Del_4q35.1	0.294	1
NF1	Amp_19p13.12	0.295	1
TBX3	Amp_19p13.12	0.295	1
Amp_1q44	Del_22q13.32	0.295	1
ACTL6B	Del_15q13.1	0.296	1
APC	Del_9q21.11	0.296	1
CDKN1B	Del_15q13.1	0.296	1
CTCF	Amp_12p13.33	0.296	1
CTCF	Del_9q21.11	0.296	1
FOXA1	Amp_10p15.1	0.296	1
GATA3	Del_6q15	0.296	1
GPS2	Del_4q35.1	0.296	1
GPS2	Del_15q13.1	0.296	1
MYH9	Amp_12p13.33	0.296	1
MYH9	Del_9q21.11	0.296	1
SF3B1	Del_9q21.11	0.296	1
22q-Del	Amp_17q12	0.296	1
CASZ1	Amp_6p23	0.298	1
RBMX	Amp_6p23	0.298	1
TBX3	Amp_17q12	0.298	1
1q-Amp	Del_12p13.1	0.298	1
Amp_8p11.23	Del_7q36.1	0.298	1
Amp_12q15	Del_10q23.31	0.298	1
EYS	13q-Del	0.299	1
MED23	Del_2q37.3	0.299	1
PIK3R1	Del_2q37.3	0.299	1
MAP2K4	PTEN	0.3	1
Amp_19p13.12	Del_6q15	0.3	1
APC	14q-Del	0.301	1
APC	Amp_19q12	0.301	1
APC	Del_21q11.2	0.301	1
ARID1A	Del_5q21.3	0.301	1
CTCF	14q-Del	0.301	1
CTCF	17q-Del	0.301	1
CTCF	Amp_19q12	0.301	1
CTCF	Del_21q11.2	0.301	1
MAP2K4	MAP3K1	0.301	1
MAP2K4	4q-Del	0.301	1
MYB	Del_11q23.3	0.301	1
MYH9	Del_21q11.2	0.301	1
NCOR1	Del_19p13.3	0.301	1
NLGN3	Amp_10p15.1	0.301	1
PTEN	Del_20p13	0.301	1
SF3B1	17q-Del	0.301	1
SF3B1	Amp_19q12	0.301	1
SF3B1	Del_21q11.2	0.301	1
SMAD2	Del_6q27	0.302	1
SPEN	22q-Del	0.302	1
CDKN1B	16p-Amp	0.303	1
FRMPD2	Del_11q25	0.303	1
MED23	8q-Amp	0.303	1
PIK3CA	20q-Amp	0.303	1
PIK3CA	Amp_10q22.3	0.303	1
PIK3R1	8q-Amp	0.303	1
PTPN22	Amp_8p11.23	0.303	1
RBMX	Del_11q25	0.303	1
Amp_1p22.3	Amp_11q14.1	0.303	1
CBFB	Del_6q27	0.304	1
GATA3	17q-Del	0.304	1
HRNR	16p-Amp	0.304	1
MED23	11p-Del	0.304	1
MED23	Del_9q34.2	0.304	1
ZMYM3	Del_12p13.1	0.304	1
16p-Amp	Amp_10p15.1	0.304	1
Amp_10q22.3	Del_17p12	0.304	1
CBFB	Del_12q24.31	0.305	1
ACTL6B	20q-Amp	0.306	1
APC	Amp_1q21.3	0.306	1
CDKN1B	Amp_11q14.1	0.306	1
FBXW7	Del_1p36.13	0.306	1
GPS2	20q-Amp	0.306	1
HRNR	11q-Del	0.306	1
SF3B1	Amp_1q21.3	0.306	1
SPEN	Del_6p25.3	0.306	1
APC	Amp_12q15	0.307	1
CTCF	MLL3	0.307	1
CTCF	Amp_12q15	0.307	1
ERBB2	Del_19p13.3	0.307	1
FBXW7	Amp_8p11.23	0.307	1
ZMYM3	Amp_8p11.23	0.307	1
PTEN	Del_16q24.3	0.308	1
ARID1A	Amp_19p13.12	0.309	1
FGFR2	Del_10q23.31	0.309	1
GPRIN2	Del_10q23.31	0.309	1
IRS4	Del_10q23.31	0.309	1
MAP2K4	Amp_12p13.33	0.309	1
MAP2K4	Del_9q21.11	0.309	1
MLL3	9q-Del	0.309	1
NLGN3	Del_10q23.31	0.309	1
RUNX1	17q-Amp	0.309	1
Amp_6p23	Del_11q13.1	0.309	1
C17orf95	Amp_1q44	0.31	1
CBFB	Amp_8p11.21	0.31	1
ERBB2	5q-Del	0.31	1
RBMX	Amp_1q44	0.31	1
TGS1	Del_11q13.1	0.31	1
FOXA1	Amp_8q24.21	0.311	1
HRNR	20q-Amp	0.311	1
NCOR1	Del_3p21.31	0.311	1
NLGN3	Del_17p12	0.311	1
16p-Amp	Del_11q13.1	0.311	1
1q-Amp	14q-Del	0.311	1
ERBB2	Del_8p23.2	0.312	1
MYB	16q-Del	0.312	1
MYB	Amp_17q23.1	0.312	1
TGS1	Amp_17q23.1	0.312	1
ZFP36L2	Del_1p36.13	0.312	1
Amp_1p22.3	Del_20p13	0.312	1
CDH1	PTPN22	0.313	1
CDH1	1q-Del	0.313	1
GPRIN2	Amp_20q13.2	0.313	1
IRS4	9p-Del	0.313	1
MAP3K1	Amp_11q13.3	0.313	1
NF1	Amp_10q22.3	0.313	1
NLGN3	Del_10q26.3	0.313	1
TBX3	Amp_10q22.3	0.313	1
Amp_1q44	Amp_11p13	0.313	1
SF3B1	16q-Del	0.314	1
SPEN	Del_4q35.1	0.314	1
17q-Amp	5q-Del	0.314	1
MAP2K4	14q-Del	0.316	1
MAP2K4	Amp_19q12	0.316	1
MAP2K4	Del_1p22.1	0.316	1
RB1	Del_11p15.5	0.316	1
CDKN1B	Del_5q11.2	0.317	1
GPRIN2	4p-Del	0.317	1
GPS2	Del_4p16.3	0.317	1
GPS2	Del_5q11.2	0.317	1
IRS4	4p-Del	0.317	1
NLGN3	4p-Del	0.317	1
PTPN22	Del_5q11.2	0.317	1
TBL1XR1	Del_11p15.5	0.317	1
7p-Amp	Del_10q23.31	0.317	1
Amp_15q26.3	Del_11q13.1	0.317	1
C17orf95	Amp_8p11.21	0.318	1
RUNX1	Del_19p13.3	0.318	1
FOXA1	GATA3	0.319	1
FOXA1	4p-Del	0.319	1
GATA3	Del_7q36.1	0.319	1
MLL3	4p-Del	0.319	1
MUC6	Del_6p25.3	0.319	1
PIK3R1	Del_6p25.3	0.319	1
7p-Amp	Del_3p21.31	0.319	1
4p-Del	Amp_12q15	0.319	1
CBFB	Amp_10p15.1	0.32	1
FBXW7	Del_9q21.11	0.32	1
SMAD4	TP53	0.32	1
ZMYM3	Del_9q21.11	0.32	1
FGFR2	8p-Amp	0.321	1
GPRIN2	18p-Del	0.321	1
IRS4	18p-Del	0.321	1
PTPN22	Del_1p22.1	0.321	1
7q-Amp	Del_12p13.1	0.321	1
PIK3CA	Amp_1q21.3	0.322	1
RBMX	Amp_17q12	0.322	1
RUNX1	Del_9q34.2	0.322	1
NF1	13q-Del	0.323	1
ZFP36L2	Del_3p21.31	0.323	1
APC	15q-Del	0.324	1
APC	9q-Del	0.324	1
CDH1	HRNR	0.324	1
CDH1	MAP3K1	0.324	1
CTCF	15q-Del	0.324	1
CTCF	9q-Del	0.324	1
ERBB2	5p-Amp	0.324	1
ERBB2	Amp_19q13.42	0.324	1
MYH9	15q-Del	0.324	1
MYH9	9q-Del	0.324	1
PTEN	7q-Amp	0.324	1
SF3B1	9q-Del	0.324	1
TPP2	Del_18q23	0.324	1
ERBB2	Del_13q14.2	0.325	1
FBXW7	17q-Del	0.325	1
FBXW7	Del_21q11.2	0.325	1
GPRIN2	18q-Del	0.325	1
IRS4	18q-Del	0.325	1
KDM6A	14q-Del	0.325	1
KDM6A	Del_21q11.2	0.325	1
KRAS	Amp_17q12	0.325	1
RUFY1	Amp_17q12	0.325	1
TCP11	Amp_17q12	0.325	1
ZMYM3	14q-Del	0.325	1
ZMYM3	Del_21q11.2	0.325	1
16p-Amp	Del_21q11.2	0.325	1
8p-Amp	Del_19q13.32	0.325	1
18q-Del	Amp_19q12	0.325	1
9p-Del	Amp_11p13	0.325	1
Amp_11p13	Del_10q26.3	0.325	1
CDC42EP1	8p-Del	0.326	1
FBXW7	11q-Del	0.326	1
FRMPD2	Del_2q37.3	0.326	1
SPEN	Del_9p21.3	0.326	1
TAF1L	Amp_15q26.3	0.326	1
TFE3	11q-Del	0.326	1
ZFP36L2	11q-Del	0.326	1
ZMYM3	11q-Del	0.326	1
7q-Amp	Del_3p21.31	0.326	1
CDKN1B	Amp_3q26.32	0.328	1
FOXA1	7p-Amp	0.328	1
KRAS	Del_8p23.2	0.328	1
NCOR1	5q-Del	0.328	1
RUFY1	Del_8p23.2	0.328	1
TGS1	Amp_6p23	0.328	1
13q-Del	Amp_13q34	0.328	1
GPRIN2	6q-Del	0.329	1
MUC6	17p-Del	0.329	1
20q-Amp	Del_12q24.31	0.329	1
Amp_1p22.3	Amp_20q13.2	0.329	1
NCDN	8q-Amp	0.33	1
RUNX1	Del_14q24.1	0.33	1
ZBTB7C	8q-Amp	0.33	1
ZNF362	8q-Amp	0.33	1
17q-Amp	Del_15q13.1	0.33	1
FRMPD2	11p-Del	0.331	1
FRMPD2	Del_9q34.2	0.331	1
GATA3	Del_9q34.2	0.331	1
GPS2	Amp_8q24.21	0.331	1
HRNR	Del_4p16.3	0.331	1
HRNR	Del_5q11.2	0.331	1
KDM6A	Amp_12q15	0.331	1
KDM6A	Del_7q36.1	0.331	1
GPS2	Amp_1p22.3	0.332	1
PTPN22	Amp_1p22.3	0.332	1
16p-Amp	Del_9q34.2	0.332	1
7q-Amp	11q-Del	0.332	1
1q-Del	Amp_1p22.3	0.332	1
Amp_1q21.3	Del_22q13.32	0.332	1
Amp_19q12	Del_9p23	0.332	1
Amp_1p22.3	Del_8p23.2	0.333	1
CDKN1B	Amp_11q13.3	0.334	1
GPS2	Amp_11q13.3	0.334	1
HRNR	17q-Del	0.334	1
IL1RAP	Del_4q35.1	0.334	1
NCOR1	8p-Del	0.334	1
NF1	Del_2q37.3	0.334	1
TBL1XR1	Del_15q13.1	0.334	1
VCPIP1	Del_15q13.1	0.334	1
MAP3K1	Del_4p16.3	0.335	1
PTEN	Del_6q27	0.335	1
17q-Del	Amp_11q14.1	0.335	1
Amp_19q12	Del_6q27	0.335	1
EYS	Del_6q27	0.336	1
GPS2	Amp_10p15.1	0.336	1
MAP3K1	SPEN	0.336	1
MED23	Del_13q14.2	0.336	1
PTEN	Amp_17q23.1	0.336	1
PTPN22	Amp_10p15.1	0.336	1
20p-Amp	16p-Del	0.336	1
CBFB	Del_19q13.32	0.337	1
FOXA1	6q-Del	0.337	1
FOXA1	Del_7p22.3	0.337	1
RUNX1	Del_6q27	0.337	1
USP36	Del_9p23	0.337	1
5p-Amp	17p-Del	0.337	1
8p-Amp	Del_3p21.31	0.337	1
CBFB	9p-Del	0.338	1
ERBB2	Amp_13q34	0.338	1
GATA3	17p-Del	0.338	1
KRAS	13q-Del	0.338	1
RUFY1	13q-Del	0.338	1
TCP11	13q-Del	0.338	1
TP53	Amp_8p11.23	0.338	1
Amp_10p15.1	Amp_11q13.3	0.338	1
Amp_19q13.42	Del_14q24.1	0.338	1
TBX3	Del_6q15	0.339	1
KCNN3	17p-Del	0.34	1
KDM6A	Amp_8q24.21	0.34	1
MAP2K4	Amp_17q12	0.34	1
PIK3CA	5p-Amp	0.34	1
Amp_10q22.3	Amp_13q34	0.34	1
KCNN3	16p-Amp	0.341	1
MYH9	Amp_20q13.2	0.341	1
PTEN	TP53	0.341	1
TBX3	Del_9q34.2	0.341	1
ERBB2	Del_4q35.1	0.342	1
FGFR2	20p-Amp	0.342	1
FGFR2	Del_11q13.1	0.342	1
GPRIN2	20p-Amp	0.342	1
HRNR	Amp_12q15	0.342	1
NF1	8p-Del	0.343	1
NF1	Del_19p13.3	0.343	1
TBX3	8p-Del	0.343	1
ACTL6B	Amp_1q44	0.344	1
NCDN	17p-Del	0.344	1
RAB42	17p-Del	0.344	1
RUNX1	TP53	0.344	1
SPEN	Amp_12p13.33	0.344	1
18p-Del	Amp_11p13	0.344	1
CBFB	7p-Amp	0.345	1
HRNR	MAP2K4	0.345	1
IL1RAP	20q-Amp	0.345	1
KRAS	Del_6q15	0.345	1
MAP3K1	Del_1p22.1	0.345	1
MED23	Amp_12p13.33	0.345	1
MED23	Del_1p36.13	0.345	1
MED23	Del_9q21.11	0.345	1
PIK3R1	Amp_12p13.33	0.345	1
RUFY1	Del_6q15	0.345	1
TBL1XR1	20q-Amp	0.345	1
TCP11	Del_6q15	0.345	1
16p-Amp	17q-Amp	0.345	1
CASZ1	Del_6p25.3	0.346	1
FRMPD2	Del_6p25.3	0.346	1
IL1RAP	Del_13q14.2	0.346	1
KCNN3	Del_13q14.2	0.346	1
RBMX	Del_6p25.3	0.346	1
TBL1XR1	Del_13q14.2	0.346	1
5p-Amp	Del_6q27	0.346	1
Amp_15q26.3	Del_1p22.1	0.346	1
ERBB2	Del_11q23.3	0.347	1
17p-Del	Amp_10p15.1	0.347	1
CDKN1B	9p-Del	0.348	1
CDKN1B	Del_10q26.3	0.348	1
CTCF	8p-Del	0.348	1
FBXW7	15q-Del	0.348	1
FBXW7	9q-Del	0.348	1
KDM6A	9q-Del	0.348	1
KDM6A	Del_20p13	0.348	1
NCDN	Del_13q14.2	0.348	1
NCOR1	5p-Amp	0.348	1
NCOR1	Amp_6q21	0.348	1
NF1	16q-Del	0.348	1
PTPN22	9p-Del	0.348	1
SF3B1	Amp_15q26.3	0.348	1
ZBTB7C	Del_13q14.2	0.348	1
ZMYM3	9q-Del	0.348	1
ZMYM3	Del_20p13	0.348	1
14q-Del	Amp_15q26.3	0.348	1
Amp_10q22.3	Del_6q15	0.348	1
ERBB2	Amp_8p11.23	0.349	1
8q-Amp	Del_4p16.3	0.349	1
FOXA1	Amp_17q23.1	0.35	1
MAP2K4	9q-Del	0.35	1
MAP2K4	Del_20p13	0.35	1
Amp_1q44	Del_20p13	0.35	1
Amp_19q13.42	Del_13q14.2	0.35	1
GPRIN2	Del_5q21.3	0.351	1
MED23	14q-Del	0.351	1
MED23	Amp_19q12	0.351	1
MLL3	6q-Del	0.351	1
MUC6	Amp_19q12	0.351	1
PIK3R1	14q-Del	0.351	1
Amp_8p11.23	Del_6p25.3	0.351	1
CDH1	KCNN3	0.352	1
ERBB2	Amp_14q21.1	0.352	1
GATA3	Amp_3p25.1	0.352	1
GPS2	4p-Del	0.352	1
SPEN	14q-Del	0.352	1
SPEN	Amp_11q13.3	0.352	1
SPEN	Del_21q11.2	0.352	1
17q-Amp	Amp_11q14.1	0.352	1
7q-Amp	14q-Del	0.352	1
7q-Amp	Del_21q11.2	0.352	1
CBFB	Amp_3p25.1	0.353	1
CBFB	Del_7p22.3	0.353	1
MAP3K1	13q-Del	0.353	1
MUC6	Del_17p12	0.353	1
TAF1L	Del_16q24.3	0.353	1
TPP2	Del_19p13.3	0.353	1
1q-Amp	Del_9q34.2	0.353	1
7q-Amp	Del_4p16.3	0.353	1
6q-Del	Amp_1q44	0.353	1
Amp_1p22.3	Del_1p22.1	0.353	1
Amp_1p22.3	Del_3p21.31	0.353	1
ARID1A	13q-Del	0.354	1
EYS	Del_19q13.32	0.354	1
FOXA1	Del_13q14.2	0.354	1
MAP3K1	1q-Amp	0.354	1
ARID1A	Del_2q37.3	0.355	1
CDC42EP1	Amp_17q23.1	0.355	1
MAP3K1	Amp_3p25.1	0.355	1
ACTL6B	18p-Del	0.356	1
CBFB	18q-Del	0.356	1
FBXW7	Del_11q23.3	0.356	1
FRMPD2	Del_12p13.1	0.356	1
GPS2	8p-Amp	0.356	1
KDM6A	Del_11q23.3	0.356	1
MED23	Amp_12q15	0.356	1
MUC6	Amp_8p11.23	0.356	1
MYB	Del_2q37.3	0.356	1
TBL1XR1	Del_5q11.2	0.356	1
TGS1	Del_2q37.3	0.356	1
VCPIP1	Del_4p16.3	0.356	1
VCPIP1	Del_5q11.2	0.356	1
8p-Amp	1q-Del	0.356	1
Amp_1q44	Del_5q21.3	0.356	1
MAP2K4	Del_10q23.31	0.357	1
RB1	20q-Amp	0.357	1
RB1	Amp_11q14.1	0.357	1
16q-Del	Amp_19p13.12	0.357	1
AQP12A	Del_6q27	0.358	1
HRNR	Amp_1p22.3	0.358	1
KRAS	Del_6q27	0.358	1
RUFY1	Del_6q27	0.358	1
7p-Amp	Del_11p15.5	0.358	1
1p-Del	Amp_15q26.3	0.358	1
CTCF	Del_18q23	0.359	1
MYH9	Del_18q23	0.359	1
NCDN	Amp_8p11.23	0.359	1
PAX2	Amp_8p11.23	0.359	1
RUNX1	Del_1p36.13	0.359	1
SF3B1	Del_18q23	0.359	1
ZBTB7C	Amp_8p11.23	0.359	1
ACTL6B	18q-Del	0.36	1
EYS	Del_17p12	0.36	1
MYB	Del_11q25	0.36	1
NLGN3	Amp_6p23	0.36	1
SPEN	Del_7q36.1	0.36	1
TPP2	Del_14q24.1	0.36	1
USP36	Del_11p15.5	0.36	1
ZFP36L1	Del_11p15.5	0.36	1
7p-Amp	6q-Del	0.36	1
7p-Amp	Del_21q11.2	0.36	1
7q-Amp	Del_1p22.1	0.36	1
7q-Amp	Del_7q36.1	0.36	1
CDKN1B	Amp_8p11.21	0.361	1
NLGN3	Amp_17q23.1	0.361	1
TGS1	11p-Del	0.361	1
5p-Amp	18p-Del	0.361	1
IL1RAP	Amp_8p11.23	0.362	1
PTEN	Amp_1q44	0.362	1
RUNX1	Del_4q35.1	0.362	1
TBL1XR1	Amp_8p11.23	0.362	1
Amp_1q44	Del_5q11.2	0.362	1
MLL3	Del_13q14.2	0.363	1
GATA3	Del_20p13	0.364	1
NLGN3	Del_11q23.3	0.364	1
PTPN22	Amp_1q21.3	0.364	1
TBX3	Del_6p25.3	0.364	1
AQP12A	PIK3CA	0.365	1
MAP2K4	9p-Del	0.365	1
MED23	11q-Del	0.365	1
MUC6	11q-Del	0.365	1
PTPN22	6q-Del	0.365	1
Amp_1q44	Del_3p21.31	0.365	1
HRNR	Del_22q13.32	0.366	1
16p-Amp	5q-Del	0.366	1
ACTL6B	Amp_20q13.2	0.367	1
CASZ1	4q-Del	0.367	1
FRMPD2	MAP3K1	0.367	1
FRMPD2	4q-Del	0.367	1
KDM6A	Del_8p23.2	0.367	1
MAP2K4	Amp_8q24.21	0.367	1
MYB	Amp_17q12	0.367	1
NF1	Del_6q27	0.367	1
PTEN	Del_19p13.3	0.367	1
TBL1XR1	Amp_3q26.32	0.367	1
Amp_1q21.3	Del_10q26.3	0.367	1
CDH1	RB1	0.368	1
NCOR1	Amp_13q34	0.368	1
16p-Amp	Del_9p23	0.368	1
1q-Amp	Amp_4q13.3	0.368	1
ERBB2	13q-Del	0.369	1
FOXA1	Del_5q21.3	0.369	1
KDM6A	16q-Del	0.369	1
KRAS	Del_1p36.13	0.369	1
MAP3K1	Del_14q24.1	0.369	1
RB1	13q-Del	0.369	1
TCP11	Del_1p36.13	0.369	1
Amp_10p15.1	Del_9p21.3	0.369	1
ARID1A	Del_6q15	0.37	1
CDKN1B	TP53	0.37	1
EYS	GATA3	0.37	1
EYS	4p-Del	0.37	1
FRMPD2	Del_6q27	0.37	1
GPS2	TP53	0.37	1
HRNR	Amp_17q12	0.37	1
MED23	1q-Amp	0.37	1
PIK3CA	1p-Del	0.37	1
PIK3CA	Amp_14q21.1	0.37	1
20p-Amp	Del_1p22.1	0.37	1
CBFB	Amp_19p13.12	0.371	1
EYS	Del_7p22.3	0.371	1
VCPIP1	Amp_1p22.3	0.371	1
5p-Amp	18q-Del	0.371	1
8q-Amp	14q-Del	0.371	1
22q-Del	Amp_4q13.3	0.372	1
5q-Del	Amp_20q13.2	0.372	1
CDKN1B	8p-Del	0.373	1
FRMPD2	Del_9q21.11	0.373	1
GPS2	8p-Del	0.373	1
MED23	15q-Del	0.373	1
MED23	9q-Del	0.373	1
TFE3	Del_18q23	0.373	1
17q-Amp	11p-Del	0.373	1
20p-Amp	17p-Del	0.373	1
1q-Del	8p-Del	0.373	1
APC	5q-Del	0.374	1
EYS	Del_8p23.2	0.374	1
MAP3K1	RUNX1	0.374	1
MYH9	5q-Del	0.374	1
NCOR1	20q-Amp	0.374	1
NCOR1	Amp_11q14.1	0.374	1
SF3B1	5q-Del	0.374	1
SPEN	Amp_3q26.32	0.374	1
TBL1XR1	Amp_10p15.1	0.375	1
EYS	8p-Amp	0.376	1
MYB	Del_6p25.3	0.376	1
PIK3CA	RB1	0.376	1
17q-Amp	Del_5q11.2	0.376	1
7p-Amp	Del_17p12	0.376	1
ARID1A	PTEN	0.377	1
CDKN1B	Del_11q13.1	0.377	1
GPS2	20p-Amp	0.377	1
PTPN22	Del_11q13.1	0.377	1
Amp_19q12	Del_1p22.1	0.377	1
CASZ1	17q-Del	0.378	1
FRMPD2	14q-Del	0.378	1
FRMPD2	17q-Del	0.378	1
MYH9	Del_9p23	0.378	1
NF1	Del_13q14.2	0.378	1
RBMX	14q-Del	0.378	1
RBMX	17q-Del	0.378	1
TAF1L	Del_11p15.5	0.378	1
USP36	Del_15q13.1	0.378	1
ZFP36L1	Del_4q35.1	0.378	1
FBXW7	Amp_8p11.21	0.379	1
FBXW7	Del_22q13.32	0.379	1
KDM6A	Del_22q13.32	0.379	1
TAF1L	Amp_13q34	0.379	1
TBX3	Del_12p13.1	0.379	1
ZMYM3	Del_22q13.32	0.379	1
16p-Amp	Del_6p25.3	0.379	1
Amp_6q21	Del_1p36.13	0.379	1
CTCF	Amp_11p13	0.38	1
KRAS	Del_3p21.31	0.38	1
KRAS	Del_9p21.3	0.38	1
MYH9	Amp_11p13	0.38	1
RUNX1	Del_11q25	0.38	1
SP3	Del_3p21.31	0.38	1
SP3	Del_9p21.3	0.38	1
ZMYM3	Amp_1q21.3	0.38	1
CBFB	Del_11q13.1	0.381	1
PTEN	Del_11p15.5	0.381	1
PTEN	Del_14q24.1	0.381	1
RAB42	Amp_11q13.3	0.381	1
ARID1A	Del_11p15.5	0.382	1
ARID1A	Del_14q24.1	0.382	1
FOXA1	Amp_4q13.3	0.382	1
RUNX1	Amp_12p13.33	0.382	1
FRMPD2	17p-Del	0.383	1
IL1RAP	Del_10q23.31	0.383	1
KRAS	11q-Del	0.383	1
MAP2K4	RUNX1	0.383	1
PIK3CA	17p-Del	0.383	1
RB1	Del_6q15	0.383	1
RBMX	17p-Del	0.383	1
SP3	11q-Del	0.383	1
TCP11	11q-Del	0.383	1
Amp_3q26.32	Del_9q21.11	0.383	1
Amp_4q13.3	Del_16q24.3	0.383	1
CASZ1	Del_7q36.1	0.384	1
RBMX	Amp_12q15	0.384	1
RBMX	Del_7q36.1	0.384	1
SPEN	8q-Amp	0.384	1
9p-Del	Amp_1q44	0.384	1
Amp_8p11.23	Del_15q13.1	0.384	1
MAP2K4	Amp_15q26.3	0.385	1
MAP3K1	4q-Del	0.385	1
MLL3	Del_11q13.1	0.385	1
CASZ1	Del_1p36.13	0.386	1
CDKN1B	Del_5q21.3	0.386	1
GPS2	Del_5q21.3	0.386	1
MYB	Del_12p13.1	0.386	1
PTPN22	Del_5q21.3	0.386	1
RBMX	Del_1p36.13	0.386	1
17q-Amp	Del_12q23.1	0.386	1
7q-Amp	Del_20p13	0.386	1
8p-Amp	Del_6p25.3	0.386	1
4q-Del	Amp_8p11.21	0.386	1
Amp_4q13.3	Del_12q24.31	0.386	1
APC	5p-Amp	0.387	1
APC	Amp_6q21	0.387	1
CTCF	Amp_6q21	0.387	1
HRNR	9p-Del	0.387	1
IL1RAP	9p-Del	0.387	1
KDM6A	Amp_20q13.2	0.387	1
MYH9	5p-Amp	0.387	1
MYH9	Amp_19q13.42	0.387	1
NF1	Del_15q13.1	0.387	1
PTEN	Del_3p21.31	0.387	1
SF3B1	Amp_6q21	0.387	1
TBL1XR1	9p-Del	0.387	1
VCPIP1	9p-Del	0.387	1
ZMYM3	Amp_20q13.2	0.387	1
5p-Amp	Del_17p12	0.387	1
CBFB	17p-Del	0.388	1
CBFB	Amp_17q23.1	0.388	1
GPRIN2	Del_2q37.3	0.388	1
IRS4	Del_2q37.3	0.388	1
MAP3K1	Amp_19p13.12	0.388	1
NLGN3	Del_2q37.3	0.388	1
PTEN	Amp_6p23	0.388	1
SPEN	Amp_10p15.1	0.388	1
1q-Amp	Amp_3q26.32	0.388	1
9p-Del	Amp_8p11.21	0.388	1
CBFB	Amp_10q22.3	0.389	1
MAP2K4	Amp_1q44	0.39	1
NCOR1	Amp_14q21.1	0.39	1
RUNX1	Amp_19q12	0.39	1
RUNX1	Del_21q11.2	0.39	1
16p-Amp	Del_20p13	0.39	1
Amp_1q44	Amp_17q12	0.39	1
Amp_8p11.23	Del_5q21.3	0.39	1
ERBB2	Del_19q13.32	0.391	1
GATA3	IL1RAP	0.391	1
GATA3	TBL1XR1	0.391	1
KCNN3	4p-Del	0.391	1
VCPIP1	4p-Del	0.391	1
CDC42EP1	Amp_17q12	0.392	1
FOXA1	NCOR1	0.392	1
GATA3	Del_1p36.13	0.392	1
MLL3	Amp_8q24.21	0.392	1
NBPF9	Amp_17q12	0.392	1
GPRIN2	11p-Del	0.393	1
GPRIN2	Del_9q34.2	0.393	1
IRS4	11p-Del	0.393	1
IRS4	Del_9q34.2	0.393	1
NLGN3	11p-Del	0.393	1
NLGN3	Del_9q34.2	0.393	1
PTEN	Amp_19q13.42	0.393	1
5p-Amp	Amp_8p11.23	0.393	1
GATA3	Del_18q23	0.394	1
KCNN3	PIK3CA	0.394	1
PIK3CA	VCPIP1	0.394	1
TBL1XR1	Amp_11q13.3	0.394	1
CDKN1B	Amp_6p23	0.395	1
FBXW7	8p-Del	0.395	1
GPS2	Amp_6p23	0.395	1
IL1RAP	18p-Del	0.395	1
KCNN3	8p-Amp	0.395	1
KDM6A	8p-Del	0.395	1
NF1	4q-Del	0.395	1
TBL1XR1	8p-Amp	0.395	1
TBL1XR1	18p-Del	0.395	1
VCPIP1	8p-Amp	0.395	1
1q-Amp	11q-Del	0.395	1
18p-Del	Amp_6p23	0.395	1
ACTL6B	1q-Amp	0.396	1
CDH1	USP36	0.396	1
ERBB2	Amp_1p22.3	0.396	1
FBXW7	Del_18q23	0.396	1
PIK3R1	Amp_11q13.3	0.396	1
MED23	Amp_15q26.3	0.397	1
MYB	4q-Del	0.397	1
MYB	Del_6q15	0.397	1
NCOR1	Del_4p16.3	0.397	1
FBXW7	5q-Del	0.398	1
KDM6A	5q-Del	0.398	1
MLL3	8q-Amp	0.398	1
ZMYM3	5q-Del	0.398	1
ERBB2	7p-Amp	0.399	1
IL1RAP	18q-Del	0.399	1
RB1	7p-Amp	0.399	1
TBL1XR1	18q-Del	0.399	1
TPP2	Del_4p16.3	0.399	1
USP36	Del_4p16.3	0.399	1
Amp_8p11.23	Del_12p13.1	0.399	1
CTCF	Amp_17q23.1	0.4	1
NCDN	Amp_8p11.21	0.4	1
NF1	16p-Amp	0.4	1
RAB42	Del_22q13.32	0.4	1
ZBTB7C	Amp_8p11.21	0.4	1
ZBTB7C	Del_22q13.32	0.4	1
7p-Amp	Del_15q13.1	0.4	1
11q-Del	Amp_12p13.33	0.4	1
APC	Amp_13q34	0.401	1
CASZ1	15q-Del	0.401	1
CASZ1	Del_20p13	0.401	1
CTCF	Amp_13q34	0.401	1
FRMPD2	15q-Del	0.401	1
FRMPD2	Del_20p13	0.401	1
MYH9	Amp_13q34	0.401	1
RBMX	Del_20p13	0.401	1
SPEN	Amp_8p11.21	0.401	1
TAF1L	Del_12q23.1	0.401	1
TAF1L	Del_12q24.31	0.401	1
Amp_1q44	Del_11p15.5	0.401	1
Amp_14q21.1	Del_10q23.31	0.401	1
MYB	Amp_12p13.33	0.402	1
MYB	Del_9q21.11	0.402	1
RUNX1	Del_4p16.3	0.402	1
RUNX1	Del_5q11.2	0.402	1
SF3B1	Del_19p13.3	0.402	1
TGS1	Amp_12p13.33	0.402	1
Amp_10q22.3	Del_12p13.1	0.402	1
CASZ1	Del_3p21.31	0.403	1
CASZ1	Del_9p21.3	0.403	1
FRMPD2	Del_3p21.31	0.403	1
NF1	Amp_12p13.33	0.403	1
RBMX	Del_9p21.3	0.403	1
TFE3	Del_19p13.3	0.403	1
USP36	Del_1p22.1	0.403	1
7q-Amp	Del_10q23.31	0.403	1
PAX2	Amp_20q13.2	0.404	1
PTEN	17p-Del	0.404	1
RAB42	Amp_20q13.2	0.404	1
TAF1L	Del_15q13.1	0.404	1
5p-Amp	Amp_13q34	0.404	1
7p-Amp	Amp_19p13.12	0.404	1
8p-Amp	4p-Del	0.404	1
PIK3CA	8p-Del	0.405	1
16p-Amp	Del_15q13.1	0.406	1
NF1	Amp_11q14.1	0.407	1
RB1	Del_6q27	0.407	1
RUNX1	7q-Amp	0.407	1
TBX3	20q-Amp	0.407	1
ERBB2	Amp_3p25.1	0.408	1
IRS4	Del_6p25.3	0.408	1
MYB	17q-Del	0.408	1
MYB	Amp_19q12	0.408	1
MYB	Del_21q11.2	0.408	1
NLGN3	Del_6p25.3	0.408	1
RAB42	8p-Del	0.408	1
RB1	Amp_3p25.1	0.408	1
TGS1	Amp_19q12	0.408	1
TPP2	17p-Del	0.408	1
ZBTB7C	8p-Del	0.408	1
18q-Del	Amp_6p23	0.408	1
Amp_6p23	Del_19q13.32	0.408	1
RUNX1	Del_1p22.1	0.409	1
SMAD2	Del_14q24.1	0.409	1
SMAD4	Del_11p15.5	0.409	1
SMAD4	Del_14q24.1	0.409	1
TBX3	Del_17p12	0.409	1
TFE3	Del_11p15.5	0.409	1
TFE3	Del_14q24.1	0.409	1
TP53	Del_1p36.13	0.409	1
ZFP36L2	Del_14q24.1	0.409	1
16q-Del	Del_10q26.3	0.409	1
4p-Del	Amp_8p11.21	0.409	1
Amp_4q13.3	Del_6q27	0.409	1
Amp_6q21	Amp_8p11.21	0.409	1
SP3	TP53	0.41	1
TP53	7q-Amp	0.41	1
Amp_1p22.3	Del_21q11.2	0.41	1
CASZ1	Amp_8p11.23	0.411	1
FBXW7	Amp_19q13.42	0.411	1
FRMPD2	Amp_8p11.23	0.411	1
KDM6A	5p-Amp	0.411	1
KDM6A	Amp_19q13.42	0.411	1
MAP3K1	14q-Del	0.411	1
MAP3K1	Amp_19q12	0.411	1
MAP3K1	Del_21q11.2	0.411	1
RBMX	Amp_8p11.23	0.411	1
TBX3	Del_21q11.2	0.411	1
TPP2	Amp_3q26.32	0.411	1
ZFP36L1	Amp_3q26.32	0.411	1
16p-Amp	Del_12p13.1	0.411	1
Amp_10q22.3	Del_1p36.13	0.411	1
APC	Del_14q24.1	0.412	1
C17orf95	Del_6q15	0.412	1
HRNR	Del_17q21.31	0.412	1
MAP3K1	Del_10q23.31	0.412	1
MYH9	Del_14q24.1	0.412	1
SF3B1	Del_11p15.5	0.412	1
SPEN	Amp_20q13.2	0.412	1
11p-Del	Amp_3q26.32	0.412	1
Amp_1q44	Amp_4q13.3	0.412	1
Amp_6q21	Del_11q13.1	0.412	1
Amp_19q13.42	Del_3p21.31	0.412	1
MYB	Amp_12q15	0.413	1
MYB	Del_7q36.1	0.413	1
NCOR1	Amp_11q13.3	0.413	1
TGS1	Del_7q36.1	0.413	1
16p-Amp	Amp_17q12	0.413	1
5p-Amp	Del_17q21.31	0.413	1
8q-Amp	Del_9p21.3	0.413	1
TPP2	Del_13q14.2	0.414	1
ZMYM3	Del_9p23	0.414	1
1q-Amp	Amp_19q12	0.414	1
4p-Del	Amp_8p11.23	0.414	1
Amp_1q44	Del_17p12	0.414	1
Amp_19q12	Del_11q23.3	0.414	1
CDKN1B	Amp_17q23.1	0.415	1
HRNR	PIK3CA	0.415	1
MLL3	Amp_3q26.32	0.415	1
Amp_8p11.23	Del_4p16.3	0.415	1
APC	Amp_14q21.1	0.416	1
CTCF	Amp_14q21.1	0.416	1
IL1RAP	20p-Amp	0.416	1
KCNN3	Del_11q13.1	0.416	1
MYH9	1p-Del	0.416	1
MYH9	Amp_14q21.1	0.416	1
PTEN	Amp_20q13.2	0.416	1
SF3B1	1p-Del	0.416	1
SF3B1	Amp_14q21.1	0.416	1
TBL1XR1	20p-Amp	0.416	1
TGS1	Del_6q27	0.416	1
Amp_1q44	Amp_8p11.21	0.416	1
Amp_14q21.1	Del_14q24.1	0.416	1
17q-Del	Amp_6p23	0.417	1
GPRIN2	Del_12p13.1	0.418	1
IRS4	Del_12p13.1	0.418	1
NLGN3	Del_12p13.1	0.418	1
1q-Amp	Del_13q14.2	0.418	1
20q-Amp	16p-Del	0.418	1
NF1	Del_7q36.1	0.419	1
RBMX	Del_17p12	0.419	1
SP3	Del_17p12	0.419	1
TBX3	Del_7q36.1	0.419	1
NF1	7q-Amp	0.42	1
TAF1L	Amp_11q14.1	0.42	1
TBX3	7q-Amp	0.42	1
20q-Amp	Del_4q35.1	0.42	1
GATA3	1p-Del	0.421	1
11q-Del	Amp_6q21	0.421	1
NCOR1	Amp_3q26.32	0.422	1
PIK3R1	Amp_8q24.21	0.422	1
TBL1XR1	Amp_8p11.21	0.422	1
VCPIP1	Del_22q13.32	0.422	1
4p-Del	Amp_11q13.3	0.422	1
ACTL6B	Del_2q37.3	0.423	1
APC	Del_12q23.1	0.423	1
APC	Del_12q24.31	0.423	1
APC	Del_16q24.3	0.423	1
CDKN1B	Del_2q37.3	0.423	1
CTCF	Del_12q23.1	0.423	1
GPS2	Del_2q37.3	0.423	1
MED23	5q-Del	0.423	1
MYH9	Del_12q23.1	0.423	1
MYH9	Del_12q24.31	0.423	1
RUNX1	Amp_3q26.32	0.423	1
TBX3	Del_11q25	0.423	1
16q-Del	Amp_6q21	0.423	1
ARID1A	Amp_12p13.33	0.424	1
FOXA1	Del_2q37.3	0.424	1
MAP3K1	9p-Del	0.424	1
RUNX1	Del_20p13	0.424	1
C17orf95	Del_6q27	0.425	1
ERBB2	Amp_19p13.12	0.425	1
FGFR2	Del_11q25	0.425	1
FRMPD2	Amp_15q26.3	0.425	1
IL1RAP	Del_5q21.3	0.425	1
NBPF9	Del_6q27	0.425	1
NLGN3	Del_11q25	0.425	1
RB1	Amp_19p13.12	0.425	1
SPEN	8p-Amp	0.425	1
TBL1XR1	Del_5q21.3	0.425	1
VCPIP1	Del_5q21.3	0.425	1
ZMYM3	Amp_13q34	0.425	1
1q-Amp	Del_1p22.1	0.425	1
ERBB2	4p-Del	0.426	1
FBXW7	Del_11q25	0.426	1
SPEN	17p-Del	0.426	1
TPP2	Del_10q23.31	0.426	1
ZMYM3	Del_11q25	0.426	1
Amp_1p22.3	Amp_12q15	0.426	1
Amp_8p11.23	Amp_10p15.1	0.426	1
SMAD2	Del_4q35.1	0.427	1
TFE3	Del_15q13.1	0.427	1
ZFP36L2	Del_4q35.1	0.427	1
ZFP36L2	Del_15q13.1	0.427	1
CDKN1B	11p-Del	0.428	1
CDKN1B	Del_9q34.2	0.428	1
GPS2	Del_9q34.2	0.428	1
IL1RAP	Amp_20q13.2	0.428	1
MAP2K4	Amp_1q21.3	0.428	1
PTPN22	11p-Del	0.428	1
FGFR2	MAP3K1	0.429	1
GPRIN2	MAP3K1	0.429	1
GPRIN2	4q-Del	0.429	1
IRS4	MAP3K1	0.429	1
IRS4	4q-Del	0.429	1
NLGN3	4q-Del	0.429	1
SPEN	Del_17p12	0.429	1
7q-Amp	Del_17p12	0.429	1
Amp_10p15.1	Del_22q13.32	0.429	1
KRAS	Del_18q23	0.43	1
MED23	Amp_8p11.21	0.43	1
MED23	Amp_11p13	0.43	1
MYB	15q-Del	0.43	1
MYB	9q-Del	0.43	1
MYB	Del_20p13	0.43	1
NCOR1	Del_18q23	0.43	1
PIK3R1	Amp_8p11.21	0.43	1
PIK3R1	Amp_11p13	0.43	1
RUNX1	Amp_1p22.3	0.43	1
SP3	Del_18q23	0.43	1
TGS1	15q-Del	0.43	1
TPP2	Del_10q26.3	0.43	1
USP36	9p-Del	0.43	1
Amp_11p13	Del_7q36.1	0.43	1
Del_1p22.1	Del_5q11.2	0.43	1
AQP12A	1q-Amp	0.431	1
RUFY1	1q-Amp	0.431	1
TPP2	Amp_8p11.23	0.431	1
USP36	Amp_8p11.23	0.431	1
1p-Del	Amp_19q13.42	0.431	1
ARID1A	Amp_19q12	0.432	1
CDH1	5p-Amp	0.432	1
ERBB2	18p-Del	0.432	1
HRNR	Del_9p23	0.432	1
RAB42	22q-Del	0.432	1
RB1	18p-Del	0.432	1
ZBTB7C	22q-Del	0.432	1
20q-Amp	Amp_1p22.3	0.432	1
EYS	Amp_6p23	0.433	1
KRAS	Del_17q21.31	0.433	1
MAP2K4	Amp_11p13	0.433	1
TCP11	Del_17q21.31	0.433	1
5p-Amp	17q-Del	0.433	1
ARID1A	7q-Amp	0.434	1
CDH1	16p-Del	0.434	1
ERBB2	Amp_8p11.21	0.434	1
FGFR2	Amp_12p13.33	0.434	1
GPRIN2	Amp_12p13.33	0.434	1
GPRIN2	Del_9q21.11	0.434	1
IL1RAP	8p-Del	0.434	1
IRS4	Amp_12p13.33	0.434	1
IRS4	Del_9q21.11	0.434	1
NF1	Del_1p22.1	0.434	1
NLGN3	Del_9q21.11	0.434	1
PIK3CA	Amp_12q15	0.434	1
SMAD4	16p-Amp	0.434	1
TBL1XR1	Amp_6p23	0.434	1
TBX3	Del_1p22.1	0.434	1
TFE3	16p-Amp	0.434	1
TPP2	4p-Del	0.434	1
USP36	4p-Del	0.434	1
VCPIP1	Amp_6p23	0.434	1
8q-Amp	9p-Del	0.434	1
Amp_4q13.3	Del_10q23.31	0.434	1
GPRIN2	13q-Del	0.435	1
IRS4	13q-Del	0.435	1
MUC6	Del_18q23	0.435	1
16p-Amp	Del_18q23	0.435	1
15q-Del	Amp_17q12	0.435	1
9q-Del	Amp_17q12	0.435	1
Amp_17q12	Del_20p13	0.435	1
C17orf95	Del_1p36.13	0.436	1
CASZ1	1q-Amp	0.436	1
FRMPD2	1q-Amp	0.436	1
MED23	5p-Amp	0.436	1
MED23	Amp_6q21	0.436	1
MED23	Amp_19q13.42	0.436	1
PIK3R1	Amp_6q21	0.436	1
PTPN22	Del_11q23.3	0.436	1
RAB42	Amp_17q23.1	0.436	1
RBMX	1q-Amp	0.436	1
TAF1L	Del_5q11.2	0.436	1
ZNF362	Amp_17q23.1	0.436	1
17p-Del	Amp_19q12	0.436	1
ARID1A	22q-Del	0.437	1
SMAD2	20q-Amp	0.437	1
SMAD4	Amp_11q14.1	0.437	1
TFE3	20q-Amp	0.437	1
ZFP36L2	20q-Amp	0.437	1
ZFP36L2	Amp_11q14.1	0.437	1
7q-Amp	Del_13q14.2	0.437	1
APC	Del_15q13.1	0.438	1
CDC42EP1	Del_8p23.2	0.438	1
CTCF	Del_4q35.1	0.438	1
ERBB2	18q-Del	0.438	1
MED23	Del_8p23.2	0.438	1
MLL3	Amp_12p13.33	0.438	1
MYH9	Del_15q13.1	0.438	1
NCOR1	Del_12p13.1	0.438	1
PIK3R1	Amp_1q44	0.438	1
SF3B1	Del_4q35.1	0.438	1
SF3B1	Del_15q13.1	0.438	1
TPP2	18p-Del	0.438	1
USP36	8p-Amp	0.438	1
USP36	18p-Del	0.438	1
16p-Amp	Amp_3p25.1	0.438	1
CBFB	PTEN	0.439	1
FBXW7	1p-Del	0.439	1
FBXW7	Amp_14q21.1	0.439	1
FGFR2	14q-Del	0.439	1
FGFR2	Del_21q11.2	0.439	1
GPRIN2	14q-Del	0.439	1
GPRIN2	Amp_19q12	0.439	1
IRS4	14q-Del	0.439	1
IRS4	Del_21q11.2	0.439	1
KDM6A	22q-Del	0.439	1
MED23	Del_17q21.31	0.439	1
NCOR1	Amp_10p15.1	0.439	1
NLGN3	14q-Del	0.439	1
NLGN3	Amp_19q12	0.439	1
ZMYM3	1p-Del	0.439	1
ZMYM3	Amp_14q21.1	0.439	1
FGFR2	Del_8p23.2	0.44	1
FRMPD2	Del_16q24.3	0.44	1
GPRIN2	Del_8p23.2	0.44	1
MAP3K1	17q-Amp	0.44	1
RBMX	Del_16q24.3	0.44	1
ZFP36L1	Del_8p23.2	0.44	1
ZNF362	Amp_8q24.21	0.44	1
Amp_1q21.3	Del_2q37.3	0.44	1
HRNR	20p-Amp	0.441	1
PTEN	20q-Amp	0.442	1
TAF1L	Del_1p22.1	0.442	1
TPP2	18q-Del	0.442	1
USP36	18q-Del	0.442	1
16p-Del	Amp_1q44	0.442	1
Amp_10q22.3	Del_21q11.2	0.442	1
CDKN1B	Del_6p25.3	0.443	1
ERBB2	Amp_10q22.3	0.443	1
ICOSLG	Del_9p23	0.443	1
KRAS	Del_9p23	0.443	1
SP3	Del_9p23	0.443	1
TCP11	Del_9p23	0.443	1
1q-Del	Del_6p25.3	0.443	1
Amp_8p11.23	Del_3p21.31	0.443	1
CDH1	ZFP36L2	0.444	1
MAP2K4	5p-Amp	0.444	1
NF1	15q-Del	0.444	1
NF1	9q-Del	0.444	1
RB1	6q-Del	0.444	1
TAF1L	Amp_8p11.23	0.444	1
TBX3	15q-Del	0.444	1
TBX3	9q-Del	0.444	1
TBX3	Del_20p13	0.444	1
Amp_3p25.1	Amp_10q22.3	0.444	1
IRS4	Del_7q36.1	0.445	1
MED23	8p-Del	0.445	1
NLGN3	Amp_12q15	0.445	1
8p-Del	Amp_12p13.33	0.445	1
FGFR2	Del_6q15	0.446	1
NLGN3	Del_6q15	0.446	1
RUNX1	TBX3	0.446	1
TPP2	6q-Del	0.446	1
USP36	6q-Del	0.446	1
20p-Amp	Amp_13q34	0.446	1
7p-Amp	Amp_4q13.3	0.446	1
Amp_13q34	Del_11q13.1	0.446	1
CDC42EP1	Del_3p21.31	0.447	1
CDC42EP1	Del_9p21.3	0.447	1
FBXW7	Amp_17q23.1	0.447	1
KDM6A	Del_12q23.1	0.447	1
PTEN	Del_12q23.1	0.447	1
ZMYM3	Amp_17q23.1	0.447	1
ZMYM3	Del_12q24.31	0.447	1
NF1	Amp_3q26.32	0.448	1
SMAD2	Del_4p16.3	0.448	1
SMAD2	Del_5q11.2	0.448	1
TAF1L	Amp_3p25.1	0.448	1
TFE3	Del_5q11.2	0.448	1
ZFP36L2	Del_4p16.3	0.448	1
11q-Del	Amp_10q22.3	0.448	1
APC	16p-Amp	0.449	1
MYH9	16p-Amp	0.449	1
PAX2	Amp_1q44	0.449	1
SF3B1	Del_17p12	0.449	1
TGS1	Del_13q14.2	0.449	1
ZMYM3	Del_11p15.5	0.449	1
ZNF362	Amp_1q44	0.449	1
C17orf95	11q-Del	0.45	1
CASZ1	5q-Del	0.45	1
CDC42EP1	11q-Del	0.45	1
FRMPD2	Amp_11q13.3	0.45	1
MED23	Amp_13q34	0.45	1
NBPF9	11q-Del	0.45	1
PIK3R1	Amp_13q34	0.45	1
HRNR	Amp_11p13	0.451	1
18q-Del	Amp_15q26.3	0.451	1
Amp_11q14.1	Amp_13q34	0.451	1
ERBB2	17q-Amp	0.452	1
MLL3	14q-Del	0.452	1
MLL3	17q-Del	0.452	1
MLL3	Amp_19q12	0.452	1
MYB	11q-Del	0.452	1
RB1	17q-Amp	0.452	1
RB1	Amp_4q13.3	0.452	1
SMAD4	Del_1p22.1	0.452	1
TFE3	Del_1p22.1	0.452	1
ZFP36L2	Del_1p22.1	0.452	1
CDKN1B	Del_12p13.1	0.453	1
GPS2	Del_12p13.1	0.453	1
PIK3R1	Del_9p23	0.453	1
5p-Amp	Del_1p22.1	0.453	1
APC	20q-Amp	0.454	1
APC	Del_19q13.32	0.454	1
ARID1A	Del_5q11.2	0.454	1
CTCF	Amp_11q14.1	0.454	1
MYB	Amp_15q26.3	0.454	1
MYH9	20q-Amp	0.454	1
MYH9	Amp_11q14.1	0.454	1
MYH9	Del_19q13.32	0.454	1
SF3B1	Del_19q13.32	0.454	1
TGS1	Amp_15q26.3	0.454	1
6q-Del	Del_5q11.2	0.454	1
Amp_1q21.3	Amp_4q13.3	0.454	1
FOXA1	MAP2K4	0.455	1
MAP2K4	Del_11p15.5	0.456	1
MAP2K4	Del_14q24.1	0.456	1
NF1	Amp_1p22.3	0.456	1
CASZ1	Amp_11p13	0.457	1
HRNR	Del_5q21.3	0.457	1
MAP3K1	Amp_11q14.1	0.457	1
8q-Amp	Del_9q21.11	0.458	1
Amp_13q34	Del_9p21.3	0.458	1
APC	Amp_8q24.21	0.459	1
KRAS	Del_19p13.3	0.459	1
RUNX1	Del_10q26.3	0.459	1
SMAD2	Amp_3q26.32	0.459	1
SPEN	5q-Del	0.459	1
TCP11	Del_19p13.3	0.459	1
TFE3	Amp_3q26.32	0.459	1
ZFP36L1	20p-Amp	0.459	1
ZFP36L2	Amp_3q26.32	0.459	1
7p-Amp	Del_17q21.31	0.459	1
RUNX1	Amp_15q26.3	0.46	1
14q-Del	Amp_4q13.3	0.46	1
18p-Del	Amp_4q13.3	0.46	1
Amp_3q26.32	Del_19q13.32	0.46	1
ARID1A	Del_1p22.1	0.461	1
NCOR1	Del_9p23	0.461	1
TBL1XR1	Del_2q37.3	0.461	1
1q-Amp	Amp_8p11.21	0.461	1
Amp_17q23.1	Amp_19q12	0.461	1
CTCF	7p-Amp	0.462	1
FGFR2	Del_20p13	0.462	1
GPRIN2	15q-Del	0.462	1
GPRIN2	Del_20p13	0.462	1
IRS4	15q-Del	0.462	1
IRS4	9q-Del	0.462	1
KCNN3	Del_17p12	0.462	1
MYH9	7p-Amp	0.462	1
NLGN3	9q-Del	0.462	1
NLGN3	Del_20p13	0.462	1
Amp_1p22.3	Del_11q25	0.462	1
CASZ1	Amp_6q21	0.463	1
CASZ1	Amp_19q13.42	0.463	1
CDKN1B	MAP3K1	0.463	1
FRMPD2	5p-Amp	0.463	1
FRMPD2	Amp_6q21	0.463	1
FRMPD2	Amp_19q13.42	0.463	1
GPS2	4q-Del	0.463	1
RB1	20p-Amp	0.463	1
RBMX	Amp_19q13.42	0.463	1
SP3	Del_11q23.3	0.463	1
TAF1L	Del_6q15	0.463	1
TBX3	Amp_10p15.1	0.463	1
ZNF362	Amp_1q21.3	0.463	1
16p-Amp	Del_9q21.11	0.463	1
16p-Amp	Del_10q23.31	0.463	1
MAP2K4	Amp_13q34	0.464	1
MUC6	Amp_14q21.1	0.464	1
PIK3R1	1p-Del	0.464	1
SPEN	Del_11q13.1	0.464	1
7q-Amp	Del_11q25	0.464	1
ARID1A	15q-Del	0.465	1
EYS	Amp_1q44	0.465	1
FGFR2	Del_6q27	0.465	1
GPRIN2	Del_6q27	0.465	1
ICOSLG	Del_14q24.1	0.465	1
KCNN3	Amp_1q21.3	0.465	1
KRAS	Del_11p15.5	0.465	1
KRAS	Del_14q24.1	0.465	1
NLGN3	Del_6q27	0.465	1
TCP11	Del_11p15.5	0.465	1
TCP11	Del_14q24.1	0.465	1
ZFP36L2	8q-Amp	0.465	1
GATA3	Del_15q13.1	0.466	1
IL1RAP	Del_9q34.2	0.466	1
KCNN3	11p-Del	0.466	1
RUNX1	4p-Del	0.466	1
TBL1XR1	Del_9q34.2	0.466	1
VCPIP1	11p-Del	0.466	1
APC	1q-Amp	0.467	1
FOXA1	HRNR	0.467	1
SMAD2	Amp_10p15.1	0.467	1
17q-Amp	Del_9p21.3	0.467	1
1q-Amp	Amp_10q22.3	0.467	1
16q-Del	Amp_15q26.3	0.467	1
ACTL6B	Amp_12p13.33	0.468	1
ACTL6B	Del_9q21.11	0.468	1
CBFB	Amp_17q12	0.468	1
CDKN1B	Amp_12p13.33	0.468	1
CDKN1B	Del_9q21.11	0.468	1
GPS2	Amp_12p13.33	0.468	1
GPS2	Del_9q21.11	0.468	1
NCOR1	Del_9q21.11	0.468	1
PTPN22	Amp_12p13.33	0.468	1
FOXA1	Del_11p15.5	0.469	1
KCNN3	22q-Del	0.469	1
VCPIP1	22q-Del	0.469	1
1q-Amp	Del_14q24.1	0.469	1
APC	Amp_3p25.1	0.47	1
APC	Del_5q11.2	0.47	1
APC	Del_7p22.3	0.47	1
CTCF	Amp_3p25.1	0.47	1
CTCF	Amp_17q12	0.47	1
CTCF	Del_4p16.3	0.47	1
CTCF	Del_5q11.2	0.47	1
CTCF	Del_7p22.3	0.47	1
MYH9	Amp_3p25.1	0.47	1
MYH9	Del_7p22.3	0.47	1
SF3B1	Del_4p16.3	0.47	1
SF3B1	Del_7p22.3	0.47	1
17q-Amp	Del_7q36.1	0.47	1
CBFB	MAP2K4	0.471	1
CDKN1B	Amp_17q12	0.471	1
GPS2	Amp_17q12	0.471	1
AQP12A	16q-Del	0.472	1
KRAS	16q-Del	0.472	1
MAP2K4	Del_3p21.31	0.472	1
MAP3K1	1p-Del	0.472	1
MUC6	Del_12q23.1	0.472	1
MUC6	Del_12q24.31	0.472	1
PIK3R1	Del_12q24.31	0.472	1
SP3	16q-Del	0.472	1
8p-Del	Amp_10p15.1	0.472	1
Amp_1p22.3	Del_6p25.3	0.472	1
NCOR1	4p-Del	0.473	1
RAB42	Amp_17q12	0.473	1
SF3B1	Del_13q14.2	0.473	1
ZBTB7C	Amp_17q12	0.473	1
20q-Amp	Amp_15q26.3	0.473	1
ACTL6B	14q-Del	0.474	1
ACTL6B	17q-Del	0.474	1
CDKN1B	14q-Del	0.474	1
CDKN1B	Del_21q11.2	0.474	1
FOXA1	Del_6q15	0.474	1
GPS2	14q-Del	0.474	1
GPS2	17q-Del	0.474	1
GPS2	Amp_19q12	0.474	1
HRNR	Amp_6p23	0.474	1
KDM6A	Del_4q35.1	0.474	1
KDM6A	Del_15q13.1	0.474	1
PIK3CA	Del_12p13.1	0.474	1
PTPN22	14q-Del	0.474	1
PTPN22	Amp_19q12	0.474	1
RUNX1	8p-Amp	0.474	1
SMAD4	Del_10q23.31	0.474	1
TAF1L	16q-Del	0.474	1
ZMYM3	Del_15q13.1	0.474	1
11q-Del	Amp_4q13.3	0.474	1
1q-Del	Amp_19q12	0.474	1
16p-Amp	16q-Del	0.475	1
20p-Amp	4p-Del	0.475	1
APC	Del_1p22.1	0.476	1
CTCF	Del_1p22.1	0.476	1
GPRIN2	Amp_8q24.21	0.476	1
KCNN3	1q-Amp	0.476	1
MLL3	Amp_13q34	0.476	1
RBMX	Del_18q23	0.476	1
SF3B1	Del_1p22.1	0.476	1
TAF1L	Del_10q23.31	0.476	1
TBL1XR1	Amp_17q23.1	0.476	1
TPP2	Amp_6p23	0.476	1
ZFP36L1	Amp_6p23	0.476	1
FBXW7	Del_19q13.32	0.477	1
FRMPD2	Amp_13q34	0.477	1
KDM6A	Del_19q13.32	0.477	1
MED23	Del_19p13.3	0.477	1
RBMX	Amp_13q34	0.477	1
NCOR1	17q-Del	0.478	1
SMAD4	9p-Del	0.478	1
ZFP36L2	Del_10q26.3	0.478	1
ACTL6B	Amp_12q15	0.479	1
CDKN1B	Amp_12q15	0.479	1
CDKN1B	Del_7q36.1	0.479	1
FOXA1	7q-Amp	0.479	1
GPS2	MLL3	0.479	1
GPS2	Amp_12q15	0.479	1
GPS2	Del_7q36.1	0.479	1
MAP2K4	11q-Del	0.479	1
MLL3	1q-Del	0.479	1
MYB	TP53	0.479	1
MYB	5q-Del	0.479	1
PTPN22	Del_7q36.1	0.479	1
SPEN	5p-Amp	0.479	1
SPEN	Amp_6q21	0.479	1
TGS1	5q-Del	0.479	1
1q-Del	Del_7q36.1	0.479	1
FGFR2	8q-Amp	0.48	1
HRNR	Del_11q23.3	0.48	1
NLGN3	8q-Amp	0.48	1
SPEN	Del_5q21.3	0.48	1
16p-Amp	Amp_19q12	0.48	1
8p-Amp	14q-Del	0.48	1
8p-Amp	22q-Del	0.48	1
Amp_13q34	Amp_20q13.2	0.48	1
VCPIP1	Del_6p25.3	0.481	1
Amp_3q26.32	Amp_8p11.23	0.481	1
Amp_8p11.21	Del_18q23	0.481	1
EYS	11p-Del	0.482	1
GATA3	SMAD2	0.482	1
HRNR	Amp_13q34	0.482	1
KRAS	Del_4q35.1	0.482	1
KRAS	Del_15q13.1	0.482	1
RUNX1	18q-Del	0.482	1
SP3	Del_4q35.1	0.482	1
SP3	Del_15q13.1	0.482	1
TCP11	Del_4q35.1	0.482	1
ZFP36L2	4p-Del	0.482	1
16p-Amp	1p-Del	0.482	1
5p-Amp	Del_20p13	0.482	1
Amp_14q21.1	Del_11q13.1	0.482	1
Amp_1q21.3	Amp_17q12	0.483	1
FRMPD2	Amp_8p11.21	0.484	1
FRMPD2	Del_22q13.32	0.484	1
PIK3CA	7p-Amp	0.484	1
8q-Amp	Amp_1q44	0.484	1
5q-Del	Amp_17q12	0.484	1
Amp_17q12	Del_15q13.1	0.484	1
FBXW7	7p-Amp	0.485	1
GPRIN2	Amp_15q26.3	0.485	1
KDM6A	7p-Amp	0.485	1
NCDN	13q-Del	0.485	1
NLGN3	Amp_15q26.3	0.485	1
PTEN	16q-Del	0.485	1
TGS1	Amp_11p13	0.485	1
ZBTB7C	13q-Del	0.485	1
Amp_11q13.3	Del_12q24.31	0.485	1
MAP2K4	1p-Del	0.486	1
MAP2K4	Amp_14q21.1	0.486	1
MLL3	TP53	0.486	1
PIK3CA	USP36	0.486	1
SMAD2	8p-Amp	0.486	1
TFE3	8p-Amp	0.486	1
TFE3	18p-Del	0.486	1
TP53	Del_7q36.1	0.486	1
ZFP36L2	8p-Amp	0.486	1
ZFP36L2	17p-Del	0.486	1
ZFP36L2	18p-Del	0.486	1
Amp_1q44	Amp_19q12	0.486	1
APC	Amp_3q26.32	0.487	1
APC	Amp_19p13.12	0.487	1
CTCF	Amp_19p13.12	0.487	1
HRNR	Amp_1q21.3	0.487	1
MED23	Del_11q25	0.487	1
MED23	Del_14q24.1	0.487	1
PIK3R1	Del_11p15.5	0.487	1
PIK3R1	Del_14q24.1	0.487	1
SF3B1	Amp_19p13.12	0.487	1
TAF1L	Del_6q27	0.487	1
TFE3	Del_16q24.3	0.487	1
7p-Amp	Del_2q37.3	0.487	1
7q-Amp	22q-Del	0.487	1
NCOR1	Del_7q36.1	0.488	1
Amp_1q44	Amp_10q22.3	0.488	1
CDKN1B	13q-Del	0.489	1
GATA3	13q-Del	0.489	1
PIK3R1	22q-Del	0.489	1
PTPN22	13q-Del	0.489	1
RUFY1	16p-Amp	0.489	1
TCP11	16p-Amp	0.489	1
8p-Amp	Del_11q13.1	0.489	1
GATA3	Del_11q25	0.49	1
GPRIN2	Amp_1q44	0.49	1
IL1RAP	Del_12p13.1	0.49	1
TFE3	18q-Del	0.49	1
ZFP36L2	18q-Del	0.49	1
ZMYM3	20q-Amp	0.49	1
ZMYM3	8q-Amp	0.49	1
CASZ1	1p-Del	0.491	1
CASZ1	Amp_14q21.1	0.491	1
FRMPD2	1p-Del	0.491	1
FRMPD2	Amp_14q21.1	0.491	1
NCOR1	18q-Del	0.491	1
Amp_11p13	Del_19q13.32	0.491	1
Amp_11q14.1	Amp_14q21.1	0.491	1
Amp_13q34	Del_1p22.1	0.491	1
APC	Amp_1p22.3	0.492	1
CASZ1	Amp_20q13.2	0.492	1
GATA3	NF1	0.492	1
KRAS	20q-Amp	0.492	1
KRAS	Amp_11q14.1	0.492	1
MYB	5p-Amp	0.492	1
MYB	Amp_6q21	0.492	1
MYB	Amp_19q13.42	0.492	1
SF3B1	Amp_1p22.3	0.492	1
TCP11	Amp_11q14.1	0.492	1
TGS1	5p-Amp	0.492	1
TGS1	Amp_19q13.42	0.492	1
16p-Amp	Del_5q11.2	0.492	1
20q-Amp	Del_5q21.3	0.492	1
15q-Del	Amp_8p11.23	0.492	1
Amp_1q21.3	Del_19p13.3	0.492	1
CBFB	Del_12p13.1	0.493	1
CBFB	Del_17p12	0.493	1
KDM6A	Del_7p22.3	0.493	1
MAP2K4	Del_15q13.1	0.493	1
NCDN	Del_6q15	0.493	1
RAB42	Del_6q15	0.493	1
SF3B1	13q-Del	0.493	1
ZMYM3	Amp_3p25.1	0.493	1
ZMYM3	Del_7p22.3	0.493	1
17q-Amp	Del_11p15.5	0.493	1
Amp_4q13.3	Del_11p15.5	0.493	1
NCOR1	Del_9p21.3	0.494	1
SMAD2	6q-Del	0.494	1
TAF1L	18p-Del	0.494	1
ACTL6B	15q-Del	0.495	1
ACTL6B	9q-Del	0.495	1
CASZ1	Del_9p23	0.495	1
CBFB	7q-Amp	0.495	1
CDKN1B	15q-Del	0.495	1
CDKN1B	9q-Del	0.495	1
CDKN1B	Del_20p13	0.495	1
FRMPD2	Del_9p23	0.495	1
GPS2	15q-Del	0.495	1
GPS2	9q-Del	0.495	1
PTPN22	15q-Del	0.495	1
USP36	Amp_20q13.2	0.495	1
7p-Amp	11q-Del	0.495	1
CASZ1	16q-Del	0.496	1
FRMPD2	16q-Del	0.496	1
Amp_11p13	Del_10q23.31	0.496	1
Amp_11q13.3	Del_12p13.1	0.496	1
Amp_20q13.2	Del_5q21.3	0.496	1
GPRIN2	Del_9p21.3	0.497	1
IRS4	Del_3p21.31	0.497	1
NLGN3	Del_9p21.3	0.497	1
RUNX1	13q-Del	0.497	1
RUNX1	Del_17q21.31	0.497	1
SPEN	Amp_6p23	0.497	1
7p-Amp	11p-Del	0.497	1
Amp_6q21	Del_6q27	0.497	1
CTCF	Amp_10p15.1	0.498	1
ERBB2	8q-Amp	0.498	1
FRMPD2	Del_12q24.31	0.498	1
RBMX	Del_12q23.1	0.498	1
16p-Amp	Del_7q36.1	0.498	1
AQP12A	CDH1	0.499	1
CASZ1	8p-Del	0.499	1
CDH1	RUFY1	0.499	1
MLL3	Del_9p23	0.499	1
TBX3	8p-Amp	0.499	1
FOXA1	14q-Del	0.5	1
FOXA1	17q-Del	0.5	1
GPS2	Del_6q15	0.5	1
IL1RAP	MAP3K1	0.5	1
IL1RAP	4q-Del	0.5	1
KCNN3	4q-Del	0.5	1
MAP3K1	VCPIP1	0.5	1
RB1	Del_8p23.2	0.5	1
TAF1L	18q-Del	0.5	1
TP53	Amp_11q14.1	0.5	1
VCPIP1	4q-Del	0.5	1
8p-Amp	Del_9q34.2	0.5	1
Amp_1q21.3	Del_6p25.3	0.5	1
Del_9q21.11	Del_12q24.31	0.5	1
NLGN3	11q-Del	0.501	1
TPP2	8p-Del	0.501	1
Amp_17q12	Del_22q13.32	0.501	1
AQP12A	Amp_8q24.21	0.502	1
HRNR	Del_3p21.31	0.502	1
MED23	Del_19q13.32	0.502	1
RUFY1	Amp_8q24.21	0.502	1
17q-Amp	15q-Del	0.502	1
17q-Amp	Del_20p13	0.502	1
9q-Del	Amp_4q13.3	0.502	1
Amp_4q13.3	Del_20p13	0.502	1
Amp_10p15.1	Del_1p22.1	0.502	1
AQP12A	Del_5q11.2	0.503	1
FOXA1	RUNX1	0.503	1
HRNR	1p-Del	0.503	1
ICOSLG	Del_4p16.3	0.503	1
KRAS	Del_4p16.3	0.503	1
KRAS	Del_5q11.2	0.503	1
MAP2K4	Del_2q37.3	0.503	1
SP3	Del_4p16.3	0.503	1
SP3	Del_5q11.2	0.503	1
TCP11	Del_4p16.3	0.503	1
TCP11	Del_5q11.2	0.503	1
USP36	Del_2q37.3	0.503	1
5p-Amp	Del_19q13.32	0.503	1
4q-Del	Amp_1q44	0.503	1
APC	Amp_10q22.3	0.504	1
CTCF	Amp_1q21.3	0.504	1
FOXA1	8q-Amp	0.504	1
MYH9	Amp_10q22.3	0.504	1
SF3B1	Amp_10q22.3	0.504	1
6q-Del	Amp_19q12	0.504	1
Amp_11q13.3	Del_4q35.1	0.504	1
MYB	Amp_13q34	0.505	1
NCDN	Del_6q27	0.505	1
PAX2	Del_6q27	0.505	1
PTEN	7p-Amp	0.505	1
RAB42	Del_6q27	0.505	1
TGS1	Amp_13q34	0.505	1
4p-Del	Amp_1q44	0.505	1
Amp_10q22.3	Amp_11q13.3	0.505	1
FBXW7	Del_4p16.3	0.506	1
IL1RAP	Amp_12p13.33	0.506	1
IL1RAP	Del_9q21.11	0.506	1
KDM6A	Del_4p16.3	0.506	1
KRAS	Del_1p22.1	0.506	1
SF3B1	Del_6q15	0.506	1
SMAD2	20p-Amp	0.506	1
SMAD4	Del_11q13.1	0.506	1
TAF1L	6q-Del	0.506	1
TAF1L	Del_1p36.13	0.506	1
TBL1XR1	Amp_12p13.33	0.506	1
TBL1XR1	Del_9q21.11	0.506	1
TCP11	Del_1p22.1	0.506	1
TFE3	20p-Amp	0.506	1
TFE3	Del_11q13.1	0.506	1
ZFP36L2	20p-Amp	0.506	1
ZFP36L2	Del_11q13.1	0.506	1
ZMYM3	Del_4p16.3	0.506	1
17q-Amp	Del_11q13.1	0.506	1
Amp_4q13.3	Del_11q13.1	0.506	1
CDC42EP1	Del_9p23	0.507	1
PTEN	Amp_10p15.1	0.507	1
SPEN	Del_1p36.13	0.507	1
ZFP36L1	11p-Del	0.507	1
8q-Amp	18q-Del	0.507	1
9q-Del	Amp_1q21.3	0.507	1
Amp_8p11.21	Del_4q35.1	0.507	1
Amp_14q21.1	Del_7q36.1	0.507	1
FOXA1	Amp_12q15	0.508	1
FOXA1	Del_7q36.1	0.508	1
GATA3	Del_19p13.3	0.508	1
RUNX1	17p-Del	0.508	1
SMAD4	Amp_8p11.23	0.508	1
Amp_12q15	Del_2q37.3	0.508	1
GPRIN2	5q-Del	0.509	1
MAP2K4	Del_22q13.32	0.509	1
MED23	7p-Amp	0.509	1
MUC6	7p-Amp	0.509	1
NLGN3	5q-Del	0.509	1
PTEN	Del_17p12	0.509	1
SPEN	Del_11p15.5	0.509	1
KDM6A	Amp_19p13.12	0.51	1
MAP3K1	20p-Amp	0.51	1
20p-Amp	4q-Del	0.51	1
7p-Amp	17p-Del	0.51	1
Amp_1q44	Amp_19p13.12	0.51	1
CDH1	1p-Del	0.511	1
IL1RAP	14q-Del	0.511	1
IL1RAP	17q-Del	0.511	1
IL1RAP	Amp_19q12	0.511	1
IL1RAP	Del_21q11.2	0.511	1
KCNN3	17q-Del	0.511	1
KCNN3	Amp_19q12	0.511	1
SP3	Del_11q25	0.511	1
TBL1XR1	17q-Del	0.511	1
TBL1XR1	Amp_19q12	0.511	1
TBL1XR1	Del_21q11.2	0.511	1
VCPIP1	14q-Del	0.511	1
VCPIP1	Del_21q11.2	0.511	1
Amp_1p22.3	Amp_3p25.1	0.511	1
Del_12q23.1	Del_21q11.2	0.511	1
MED23	Del_15q13.1	0.512	1
RUFY1	Amp_1q44	0.512	1
TCP11	Amp_1q44	0.512	1
16p-Amp	Del_1p36.13	0.512	1
APC	Amp_4q13.3	0.513	1
ARID1A	PIK3CA	0.513	1
CTCF	17q-Amp	0.513	1
CTCF	Amp_4q13.3	0.513	1
ICOSLG	Amp_3q26.32	0.513	1
IRS4	Amp_1q21.3	0.513	1
IRS4	Del_13q14.2	0.513	1
KRAS	Amp_3q26.32	0.513	1
MYH9	Amp_4q13.3	0.513	1
NLGN3	Amp_1q21.3	0.513	1
SF3B1	Amp_4q13.3	0.513	1
SP3	Amp_3q26.32	0.513	1
CDH1	14q-Del	0.514	1
HRNR	8q-Amp	0.514	1
HRNR	Del_12q24.31	0.514	1
NF1	6q-Del	0.514	1
SMAD2	Del_5q21.3	0.514	1
TBX3	Amp_8p11.21	0.514	1
KDM6A	Del_17p12	0.515	1
RAB42	Del_1p36.13	0.515	1
RUNX1	Del_6q15	0.515	1
SF3B1	9p-Del	0.515	1
ZBTB7C	Del_1p36.13	0.515	1
ZMYM3	Del_17p12	0.515	1
ZNF362	Del_1p36.13	0.515	1
CASZ1	Del_8p23.2	0.516	1
GPRIN2	Amp_11p13	0.516	1
IL1RAP	Del_7q36.1	0.516	1
IL1RAP	Del_11q23.3	0.516	1
KCNN3	MLL3	0.516	1
KCNN3	Amp_12q15	0.516	1
KCNN3	Del_7q36.1	0.516	1
KCNN3	Del_11q23.3	0.516	1
MAP2K4	20q-Amp	0.516	1
NLGN3	Amp_11p13	0.516	1
RBMX	Del_8p23.2	0.516	1
TBL1XR1	Amp_12q15	0.516	1
VCPIP1	Del_7q36.1	0.516	1
ZMYM3	Amp_17q12	0.516	1
Amp_1q21.3	Amp_19q13.42	0.516	1
AQP12A	Amp_1p22.3	0.517	1
MED23	Del_7p22.3	0.517	1
MUC6	Amp_3p25.1	0.517	1
NCOR1	Del_11p15.5	0.517	1
NF1	5q-Del	0.517	1
PIK3R1	Amp_3p25.1	0.517	1
RUFY1	Amp_1p22.3	0.517	1
SP3	Amp_1p22.3	0.517	1
CDKN1B	Amp_15q26.3	0.518	1
EYS	Del_12p13.1	0.518	1
FRMPD2	Del_19p13.3	0.518	1
MYB	1p-Del	0.518	1
MYB	Amp_14q21.1	0.518	1
TGS1	1p-Del	0.518	1
TGS1	Amp_14q21.1	0.518	1
Amp_11p13	Del_9q34.2	0.518	1
ACTL6B	Del_6q27	0.519	1
CDKN1B	Del_6q27	0.519	1
PTPN22	Del_6q27	0.519	1
RUNX1	Del_13q14.2	0.519	1
FOXA1	Amp_11q14.1	0.52	1
MAP2K4	Amp_20q13.2	0.52	1
NCOR1	Del_20p13	0.52	1
Amp_10q22.3	Amp_17q23.1	0.52	1
CTCF	4p-Del	0.521	1
FBXW7	17p-Del	0.521	1
GATA3	MYH9	0.521	1
KRAS	Amp_10p15.1	0.521	1
MYB	Del_18q23	0.521	1
PIK3CA	PTEN	0.521	1
SP3	Amp_10p15.1	0.521	1
SPEN	Amp_14q21.1	0.521	1
TPP2	Del_6p25.3	0.521	1
CTCF	NCOR1	0.522	1
FGFR2	5p-Amp	0.522	1
FGFR2	Amp_19q13.42	0.522	1
GPRIN2	Amp_6q21	0.522	1
GPRIN2	Amp_19q13.42	0.522	1
IRS4	5p-Amp	0.522	1
KDM6A	Amp_3q26.32	0.522	1
NLGN3	5p-Amp	0.522	1
NLGN3	Amp_6q21	0.522	1
NLGN3	Amp_19q13.42	0.522	1
ZMYM3	Amp_3q26.32	0.522	1
C17orf95	Del_19p13.3	0.523	1
CDC42EP1	Del_19p13.3	0.523	1
ERBB2	MAP2K4	0.523	1
MAP2K4	RB1	0.523	1
MLL3	Del_12q23.1	0.523	1
SMAD2	Amp_6p23	0.523	1
SMAD4	Amp_6p23	0.523	1
TFE3	Amp_6p23	0.523	1
7p-Amp	Del_13q14.2	0.523	1
CBFB	Del_21q11.2	0.524	1
PIK3CA	Amp_11q13.3	0.524	1
TAF1L	20p-Amp	0.524	1
TAF1L	Del_11q13.1	0.524	1
16p-Amp	18q-Del	0.524	1
MYB	Del_12q23.1	0.525	1
MYB	Del_12q24.31	0.525	1
MYB	Del_17q21.31	0.525	1
NF1	Amp_20q13.2	0.525	1
RAB42	Del_3p21.31	0.525	1
RAB42	Del_9p21.3	0.525	1
TGS1	Del_12q23.1	0.525	1
ZBTB7C	Del_3p21.31	0.525	1
ZBTB7C	Del_9p21.3	0.525	1
ARID1A	18p-Del	0.526	1
SPEN	Del_11q23.3	0.526	1
TAF1L	Del_9p21.3	0.526	1
8p-Amp	16p-Del	0.526	1
9p-Del	Amp_19q13.42	0.526	1
Amp_19q13.42	Del_10q26.3	0.526	1
APC	8p-Amp	0.527	1
CASZ1	Del_19q13.32	0.527	1
CTCF	8p-Amp	0.527	1
CTCF	18p-Del	0.527	1
FBXW7	Amp_10q22.3	0.527	1
FRMPD2	Del_19q13.32	0.527	1
KDM6A	Amp_10q22.3	0.527	1
NCOR1	20p-Amp	0.527	1
NCOR1	Del_11q13.1	0.527	1
NF1	Amp_11p13	0.527	1
RBMX	Del_19q13.32	0.527	1
SF3B1	18p-Del	0.527	1
TBX3	Del_17q21.31	0.527	1
VCPIP1	16q-Del	0.527	1
Amp_1q44	Del_4p16.3	0.527	1
AQP12A	Del_10q23.31	0.528	1
CASZ1	Del_11p15.5	0.528	1
CASZ1	Del_14q24.1	0.528	1
ICOSLG	Del_10q23.31	0.528	1
KRAS	Del_10q23.31	0.528	1
MED23	20q-Amp	0.528	1
MED23	Amp_11q14.1	0.528	1
MUC6	20q-Amp	0.528	1
MUC6	Amp_11q14.1	0.528	1
NCDN	11q-Del	0.528	1
RAB42	Del_16q24.3	0.528	1
RUNX1	Del_5q21.3	0.528	1
TCP11	Del_10q23.31	0.528	1
ZNF362	11q-Del	0.528	1
7p-Amp	Del_10q26.3	0.528	1
Amp_8p11.21	Del_3p21.31	0.528	1
C17orf95	Del_11p15.5	0.529	1
CDC42EP1	Del_11p15.5	0.529	1
CDC42EP1	Del_14q24.1	0.529	1
ERBB2	Del_2q37.3	0.529	1
FBXW7	Del_13q14.2	0.529	1
FRMPD2	Amp_1q44	0.529	1
KDM6A	Del_13q14.2	0.529	1
RB1	Del_2q37.3	0.529	1
TAF1L	Del_22q13.32	0.529	1
7p-Amp	Del_6p25.3	0.529	1
Amp_13q34	Del_19q13.32	0.529	1
Amp_15q26.3	Amp_17q12	0.529	1
APC	Del_6q27	0.53	1
CBFB	Amp_20q13.2	0.53	1
MAP2K4	Del_13q14.2	0.53	1
RUNX1	Del_16q24.3	0.53	1
TBL1XR1	Amp_17q12	0.53	1
Amp_20q13.2	Del_4q35.1	0.53	1
CBFB	NF1	0.531	1
CDH1	MAP2K4	0.531	1
PIK3CA	Del_12q24.31	0.531	1
SPEN	Del_12q23.1	0.531	1
TBX3	13q-Del	0.531	1
TPP2	Del_12p13.1	0.531	1
ZFP36L1	Del_12p13.1	0.531	1
7q-Amp	Del_12q23.1	0.531	1
7q-Amp	Del_12q24.31	0.531	1
16q-Del	4p-Del	0.531	1
Amp_14q21.1	Del_1p22.1	0.531	1
AQP12A	Del_10q26.3	0.532	1
CBFB	Amp_12q15	0.532	1
CTCF	18q-Del	0.532	1
EYS	Del_14q24.1	0.532	1
ICOSLG	Del_10q26.3	0.532	1
IL1RAP	15q-Del	0.532	1
IL1RAP	9q-Del	0.532	1
KCNN3	Del_20p13	0.532	1
KRAS	9p-Del	0.532	1
KRAS	Del_10q26.3	0.532	1
SF3B1	18q-Del	0.532	1
SP3	9p-Del	0.532	1
TBL1XR1	15q-Del	0.532	1
TBL1XR1	9q-Del	0.532	1
TCP11	9p-Del	0.532	1
TCP11	Del_10q26.3	0.532	1
VCPIP1	15q-Del	0.532	1
VCPIP1	9q-Del	0.532	1
VCPIP1	Del_20p13	0.532	1
7q-Amp	Del_8p23.2	0.532	1
Amp_3p25.1	Del_11q23.3	0.532	1
EYS	MAP3K1	0.533	1
GPRIN2	Amp_8p11.23	0.533	1
IRS4	Amp_8p11.23	0.533	1
MED23	Amp_19p13.12	0.533	1
MUC6	Amp_19p13.12	0.533	1
NLGN3	Amp_8p11.23	0.533	1
SPEN	Del_3p21.31	0.533	1
5q-Del	6q-Del	0.533	1
Amp_3q26.32	Del_11q25	0.533	1
CDKN1B	Del_1p36.13	0.534	1
GPS2	Del_1p36.13	0.534	1
APC	16q-Del	0.535	1
CASZ1	7p-Amp	0.535	1
EYS	RUNX1	0.535	1
FBXW7	17q-Amp	0.535	1
FBXW7	Amp_4q13.3	0.535	1
FGFR2	Amp_13q34	0.535	1
FRMPD2	7p-Amp	0.535	1
GATA3	ICOSLG	0.535	1
GATA3	KRAS	0.535	1
ICOSLG	4p-Del	0.535	1
KDM6A	Amp_4q13.3	0.535	1
KRAS	4p-Del	0.535	1
NLGN3	Amp_13q34	0.535	1
ZMYM3	17q-Amp	0.535	1
ZMYM3	Amp_4q13.3	0.535	1
GATA3	5p-Amp	0.536	1
NF1	Amp_6q21	0.536	1
TAF1L	Del_5q21.3	0.536	1
TBX3	Amp_6q21	0.536	1
Amp_10q22.3	Amp_11q14.1	0.536	1
RUNX1	Amp_13q34	0.537	1
20q-Amp	22q-Del	0.537	1
8p-Amp	Del_22q13.32	0.537	1
APC	6q-Del	0.538	1
KDM6A	13q-Del	0.538	1
MYH9	6q-Del	0.538	1
NCOR1	17q-Amp	0.538	1
RB1	Del_18q23	0.538	1
TAF1L	Amp_20q13.2	0.538	1
ZMYM3	13q-Del	0.538	1
AQP12A	8p-Amp	0.539	1
C17orf95	1q-Amp	0.539	1
ICOSLG	8p-Amp	0.539	1
KRAS	8p-Amp	0.539	1
KRAS	18p-Del	0.539	1
SP3	8p-Amp	0.539	1
SP3	18p-Del	0.539	1
TCP11	8p-Amp	0.539	1
17p-Del	Amp_8p11.21	0.539	1
Amp_17q12	Del_9q34.2	0.539	1
EYS	Del_9q21.11	0.541	1
MAP3K1	TPP2	0.541	1
MYH9	16p-Del	0.541	1
TPP2	4q-Del	0.541	1
USP36	4q-Del	0.541	1
ZFP36L1	4q-Del	0.541	1
1q-Amp	Amp_6q21	0.541	1
20p-Amp	14q-Del	0.541	1
CASZ1	22q-Del	0.542	1
CASZ1	Amp_3p25.1	0.542	1
CASZ1	Del_7p22.3	0.542	1
CDKN1B	5q-Del	0.542	1
FRMPD2	Amp_3p25.1	0.542	1
GPS2	5q-Del	0.542	1
MYB	Amp_8p11.21	0.542	1
MYB	Del_22q13.32	0.542	1
PTEN	Amp_19p13.12	0.542	1
PTPN22	5q-Del	0.542	1
RBMX	Amp_3p25.1	0.542	1
RBMX	Del_7p22.3	0.542	1
TGS1	Del_22q13.32	0.542	1
ZFP36L1	Amp_17q23.1	0.542	1
KRAS	18q-Del	0.543	1
MUC6	Del_4p16.3	0.543	1
RB1	Del_17q21.31	0.543	1
SP3	18q-Del	0.543	1
Amp_4q13.3	Amp_6p23	0.543	1
Amp_12p13.33	Del_8p23.2	0.543	1
Amp_12q15	Del_4p16.3	0.543	1
Amp_14q21.1	Del_11q25	0.543	1
KDM6A	Del_10q23.31	0.544	1
MAP3K1	8p-Del	0.544	1
RUNX1	Amp_6p23	0.544	1
SMAD4	Del_8p23.2	0.544	1
ERBB2	7q-Amp	0.545	1
NCOR1	Del_5q21.3	0.545	1
RB1	7q-Amp	0.545	1
TPP2	Amp_12p13.33	0.546	1
USP36	Amp_8q24.21	0.546	1
ZFP36L1	Amp_12p13.33	0.546	1
5p-Amp	16q-Del	0.546	1
AQP12A	6q-Del	0.547	1
FOXA1	Del_3p21.31	0.547	1
KCNN3	13q-Del	0.547	1
KRAS	6q-Del	0.547	1
RUFY1	6q-Del	0.547	1
TBL1XR1	13q-Del	0.547	1
6q-Del	Del_19q13.32	0.547	1
CDKN1B	Amp_11p13	0.548	1
EYS	14q-Del	0.548	1
EYS	Amp_19q12	0.548	1
FGFR2	1p-Del	0.548	1
GPRIN2	1p-Del	0.548	1
GPRIN2	Amp_14q21.1	0.548	1
GPS2	Amp_11p13	0.548	1
IRS4	1p-Del	0.548	1
IRS4	Amp_14q21.1	0.548	1
MED23	Del_1p22.1	0.548	1
MUC6	Del_1p22.1	0.548	1
NLGN3	1p-Del	0.548	1
NLGN3	Amp_14q21.1	0.548	1
PIK3R1	Del_1p22.1	0.548	1
PTPN22	Amp_11p13	0.548	1
SMAD2	Del_2q37.3	0.548	1
SPEN	Amp_1q21.3	0.548	1
Amp_11q14.1	Del_15q13.1	0.548	1
CDH1	Del_1p22.1	0.549	1
CDKN1B	Del_3p21.31	0.549	1
GATA3	18p-Del	0.549	1
GPS2	Del_3p21.31	0.549	1
GPS2	Del_9p21.3	0.549	1
20q-Amp	5q-Del	0.549	1
Amp_8p11.23	Amp_17q12	0.549	1
CBFB	20q-Amp	0.55	1
CTCF	PTEN	0.55	1
KDM6A	Del_10q26.3	0.55	1
MUC6	Amp_10q22.3	0.55	1
MYH9	PTEN	0.55	1
PIK3R1	Amp_10q22.3	0.55	1
PTPN22	8q-Amp	0.55	1
RB1	Del_11q23.3	0.55	1
RBMX	Amp_17q23.1	0.55	1
TPP2	14q-Del	0.55	1
TPP2	17q-Del	0.55	1
TPP2	Del_21q11.2	0.55	1
ZFP36L1	Amp_19q12	0.55	1
ZFP36L1	Del_21q11.2	0.55	1
ZMYM3	9p-Del	0.55	1
ZMYM3	Del_10q26.3	0.55	1
1q-Amp	13q-Del	0.55	1
8q-Amp	1q-Del	0.55	1
6q-Del	Amp_11p13	0.55	1
Amp_10q22.3	Del_11q23.3	0.55	1
C17orf95	16p-Amp	0.551	1
7p-Amp	Del_12p13.1	0.551	1
ZMYM3	Del_6q15	0.552	1
AQP12A	8q-Amp	0.553	1
KRAS	8q-Amp	0.553	1
RUFY1	8q-Amp	0.553	1
SMAD2	Del_9q34.2	0.553	1
SMAD4	11p-Del	0.553	1
SMAD4	Del_9q34.2	0.553	1
TBL1XR1	Amp_15q26.3	0.553	1
TFE3	11p-Del	0.553	1
VCPIP1	Amp_15q26.3	0.553	1
ZFP36L2	11p-Del	0.553	1
ZFP36L2	Del_9q34.2	0.553	1
1p-Del	8p-Del	0.553	1
C17orf95	Amp_11q14.1	0.554	1
CDC42EP1	20q-Amp	0.554	1
CDKN1B	5p-Amp	0.554	1
CDKN1B	Amp_6q21	0.554	1
CDKN1B	Amp_19q13.42	0.554	1
GPS2	5p-Amp	0.554	1
GPS2	Amp_19q13.42	0.554	1
MYB	Del_19q13.32	0.554	1
NBPF9	Amp_11q14.1	0.554	1
PTPN22	5p-Amp	0.554	1
PTPN22	Amp_6q21	0.554	1
RBMX	Amp_1q21.3	0.554	1
TGS1	Del_19q13.32	0.554	1
5p-Amp	1q-Del	0.554	1
1q-Del	Amp_19q13.42	0.554	1
9q-Del	Amp_1q44	0.554	1
FBXW7	GATA3	0.555	1
FBXW7	4p-Del	0.555	1
KDM6A	4p-Del	0.555	1
MLL3	ZFP36L1	0.555	1
NLGN3	Del_12q23.1	0.555	1
PIK3CA	Amp_3q26.32	0.555	1
USP36	Del_7q36.1	0.555	1
ZFP36L1	Del_7q36.1	0.555	1
ZMYM3	4p-Del	0.555	1
1p-Del	Del_19q13.32	0.555	1
Amp_1q21.3	Amp_19p13.12	0.555	1
APC	20p-Amp	0.556	1
ARID1A	5p-Amp	0.556	1
CBFB	Del_20p13	0.556	1
CTCF	Del_11q13.1	0.556	1
EYS	Amp_12q15	0.556	1
MYH9	20p-Amp	0.556	1
NF1	Amp_13q34	0.556	1
SF3B1	Del_11q13.1	0.556	1
SPEN	Del_9q34.2	0.556	1
TBX3	Amp_13q34	0.556	1
7q-Amp	11p-Del	0.556	1
16q-Del	Del_21q11.2	0.556	1
RB1	Del_6p25.3	0.557	1
RUNX1	1p-Del	0.557	1
RUNX1	Amp_14q21.1	0.557	1
16q-Del	Amp_3p25.1	0.557	1
Amp_1q21.3	Del_14q24.1	0.557	1
CASZ1	Amp_19p13.12	0.558	1
FRMPD2	Amp_19p13.12	0.558	1
HRNR	Del_19q13.32	0.558	1
IL1RAP	Del_6q15	0.558	1
KRAS	20p-Amp	0.558	1
KRAS	Del_11q13.1	0.558	1
MED23	17q-Amp	0.558	1
MED23	Amp_4q13.3	0.558	1
MUC6	Amp_4q13.3	0.558	1
PIK3R1	17q-Amp	0.558	1
RBMX	Amp_19p13.12	0.558	1
SP3	Del_11q13.1	0.558	1
TBL1XR1	Del_6q15	0.558	1
TCP11	Del_11q13.1	0.558	1
Amp_1q44	Amp_13q34	0.558	1
GATA3	Del_3p21.31	0.559	1
KCNN3	Del_16q24.3	0.559	1
MED23	Amp_3q26.32	0.559	1
VCPIP1	Del_16q24.3	0.559	1
18q-Del	Amp_8p11.21	0.559	1
HRNR	Del_6p25.3	0.56	1
MAP2K4	TAF1L	0.56	1
RUNX1	22q-Del	0.56	1
CDH1	NBPF9	0.561	1
FBXW7	18p-Del	0.561	1
KDM6A	8p-Amp	0.561	1
MYB	7p-Amp	0.561	1
TGS1	7p-Amp	0.561	1
20p-Amp	Del_15q13.1	0.561	1
Amp_1p22.3	Amp_14q21.1	0.561	1
Del_4q35.1	Del_11q13.1	0.561	1
FRMPD2	16p-Amp	0.562	1
KDM6A	16p-Del	0.562	1
RBMX	16p-Amp	0.562	1
ZMYM3	Amp_1q44	0.562	1
GATA3	18q-Del	0.563	1
MAP2K4	Amp_3q26.32	0.563	1
20q-Amp	Del_20p13	0.563	1
8p-Amp	Del_4p16.3	0.563	1
C17orf95	Del_4p16.3	0.564	1
C17orf95	Del_5q11.2	0.564	1
CDC42EP1	Del_4p16.3	0.564	1
CDC42EP1	Del_5q11.2	0.564	1
MED23	Amp_1p22.3	0.564	1
MUC6	Amp_1p22.3	0.564	1
NBPF9	Del_4p16.3	0.564	1
NCOR1	Amp_6p23	0.564	1
PIK3CA	Del_17q21.31	0.564	1
PIK3R1	Amp_17q12	0.564	1
SMAD2	Del_22q13.32	0.564	1
SMAD4	Amp_8p11.21	0.564	1
TFE3	Del_22q13.32	0.564	1
8q-Amp	8p-Del	0.564	1
ARID1A	Amp_20q13.2	0.565	1
RUNX1	Del_11p15.5	0.565	1
1q-Amp	1p-Del	0.565	1
5p-Amp	Amp_19p13.12	0.565	1
AQP12A	Del_5q21.3	0.566	1
CDKN1B	Amp_13q34	0.566	1
FBXW7	18q-Del	0.566	1
KRAS	Del_5q21.3	0.566	1
PTEN	6q-Del	0.566	1
PTPN22	Amp_13q34	0.566	1
SMAD2	Del_6p25.3	0.566	1
SMAD4	Del_6p25.3	0.566	1
SP3	Del_5q21.3	0.566	1
TCP11	Del_5q21.3	0.566	1
TFE3	Del_6p25.3	0.566	1
20p-Amp	5q-Del	0.566	1
16p-Del	Amp_4q13.3	0.566	1
Amp_4q13.3	Del_11q25	0.566	1
Amp_20q13.2	Del_12q24.31	0.566	1
C17orf95	Del_1p22.1	0.567	1
CASZ1	20q-Amp	0.567	1
CDC42EP1	Del_1p22.1	0.567	1
FRMPD2	Amp_11q14.1	0.567	1
GATA3	Del_12p13.1	0.567	1
HRNR	1q-Amp	0.567	1
IRS4	Del_18q23	0.567	1
MED23	NCOR1	0.567	1
RBMX	Amp_11q14.1	0.567	1
APC	Del_3p21.31	0.568	1
APC	Del_5q21.3	0.568	1
CTCF	Del_3p21.31	0.568	1
CTCF	Del_5q21.3	0.568	1
MYH9	Del_3p21.31	0.568	1
NF1	Amp_6p23	0.568	1
SF3B1	Del_3p21.31	0.568	1
SF3B1	Del_5q21.3	0.568	1
SF3B1	Del_9p21.3	0.568	1
SPEN	20q-Amp	0.568	1
TBX3	Amp_6p23	0.568	1
8p-Amp	Amp_3p25.1	0.568	1
6q-Del	Amp_19q13.42	0.568	1
Amp_1q44	Del_4q35.1	0.568	1
Amp_6q21	Del_8p23.2	0.568	1
Amp_6q21	Del_9p21.3	0.568	1
C17orf95	Del_11q23.3	0.569	1
HRNR	Del_13q14.2	0.569	1
IRS4	Del_17p12	0.569	1
MED23	Amp_10p15.1	0.569	1
MYB	Del_7p22.3	0.569	1
PIK3CA	RUNX1	0.569	1
PIK3R1	Amp_10p15.1	0.569	1
20q-Amp	Del_22q13.32	0.569	1
CBFB	Del_5q11.2	0.57	1
MYB	Del_11p15.5	0.57	1
MYB	Del_14q24.1	0.57	1
NCDN	Del_18q23	0.57	1
RAB42	Del_18q23	0.57	1
TFE3	Amp_20q13.2	0.57	1
ZNF362	Del_18q23	0.57	1
EYS	1q-Amp	0.571	1
GPRIN2	Amp_11q13.3	0.571	1
HRNR	Amp_8q24.21	0.571	1
NLGN3	Amp_11q13.3	0.571	1
TPP2	15q-Del	0.571	1
TPP2	Del_20p13	0.571	1
USP36	15q-Del	0.571	1
1p-Del	Amp_10p15.1	0.571	1
Amp_10q22.3	Del_1p22.1	0.571	1
MAP3K1	7p-Amp	0.572	1
NCDN	Del_8p23.2	0.572	1
NLGN3	Del_17q21.31	0.572	1
ZMYM3	6q-Del	0.572	1
ZNF362	Del_8p23.2	0.572	1
AQP12A	17p-Del	0.573	1
CTCF	11q-Del	0.573	1
GATA3	Amp_13q34	0.573	1
MYH9	11q-Del	0.573	1
NCDN	Del_17q21.31	0.573	1
PAX2	Del_17q21.31	0.573	1
PTEN	Amp_8p11.21	0.573	1
RAB42	Del_17q21.31	0.573	1
SP3	17p-Del	0.573	1
ZNF362	Del_17q21.31	0.573	1
Amp_1q44	Del_19p13.3	0.573	1
AQP12A	Amp_6p23	0.574	1
CASZ1	Amp_10q22.3	0.574	1
IL1RAP	Del_11q25	0.574	1
KDM6A	Del_6q27	0.574	1
KRAS	Amp_6p23	0.574	1
NCOR1	16p-Amp	0.574	1
RBMX	Amp_10q22.3	0.574	1
SP3	Amp_6p23	0.574	1
TAF1L	Amp_8q24.21	0.574	1
VCPIP1	Del_11q25	0.574	1
4p-Del	Amp_1q21.3	0.574	1
Amp_1q21.3	Del_9q34.2	0.574	1
CASZ1	PIK3CA	0.575	1
PTPN22	17p-Del	0.575	1
SMAD2	8p-Del	0.575	1
SMAD2	Del_12p13.1	0.575	1
SMAD4	8p-Del	0.575	1
TFE3	8p-Del	0.575	1
ZFP36L2	Del_12p13.1	0.575	1
IL1RAP	5q-Del	0.576	1
TBL1XR1	5q-Del	0.576	1
TBX3	Amp_14q21.1	0.576	1
VCPIP1	5q-Del	0.576	1
VCPIP1	Del_6q27	0.576	1
8q-Amp	Del_9q34.2	0.576	1
13q-Del	Amp_6q21	0.576	1
C17orf95	Amp_1p22.3	0.577	1
CDC42EP1	Amp_1p22.3	0.577	1
CDH1	RBMX	0.577	1
GATA3	6q-Del	0.577	1
MAP2K4	Del_8p23.2	0.577	1
5p-Amp	8p-Del	0.577	1
18q-Del	Del_7p22.3	0.577	1
4p-Del	6q-Del	0.577	1
AQP12A	Del_13q14.2	0.578	1
SP3	Del_13q14.2	0.578	1
Amp_3q26.32	Amp_12q15	0.578	1
ACTL6B	Amp_14q21.1	0.579	1
CDKN1B	1p-Del	0.579	1
CDKN1B	Amp_14q21.1	0.579	1
EYS	15q-Del	0.579	1
PTPN22	1p-Del	0.579	1
8p-Amp	Del_12p13.1	0.579	1
1q-Del	Amp_14q21.1	0.579	1
APC	Amp_6p23	0.58	1
CTCF	MAP2K4	0.58	1
MAP2K4	MYH9	0.58	1
MAP2K4	SF3B1	0.58	1
MED23	Del_10q23.31	0.58	1
MUC6	Del_10q23.31	0.58	1
MYH9	Amp_6p23	0.58	1
PIK3R1	Del_10q23.31	0.58	1
PTEN	17q-Amp	0.58	1
SF3B1	Amp_6p23	0.58	1
SF3B1	Amp_8p11.21	0.58	1
SF3B1	Del_22q13.32	0.58	1
TBX3	Del_19p13.3	0.58	1
ACTL6B	Del_13q14.2	0.581	1
C17orf95	Amp_10p15.1	0.581	1
NBPF9	Amp_10p15.1	0.581	1
PTPN22	Del_13q14.2	0.581	1
RAB42	Del_9p23	0.581	1
TAF1L	7q-Amp	0.581	1
ZBTB7C	Del_9p23	0.581	1
20p-Amp	Del_17p12	0.581	1
17p-Del	Amp_12q15	0.581	1
Amp_19p13.12	Del_10q23.31	0.581	1
CASZ1	Amp_4q13.3	0.582	1
CASZ1	Del_5q11.2	0.582	1
FBXW7	Del_8p23.2	0.582	1
FGFR2	Del_19q13.32	0.582	1
FRMPD2	Amp_4q13.3	0.582	1
FRMPD2	Del_5q11.2	0.582	1
GPRIN2	Del_19q13.32	0.582	1
IL1RAP	Amp_11p13	0.582	1
IRS4	Del_19q13.32	0.582	1
KCNN3	Amp_11p13	0.582	1
NLGN3	Del_19q13.32	0.582	1
PIK3CA	18p-Del	0.582	1
RBMX	Amp_4q13.3	0.582	1
TBL1XR1	Amp_11p13	0.582	1
VCPIP1	Amp_11p13	0.582	1
ZMYM3	Del_8p23.2	0.582	1
16p-Amp	13q-Del	0.582	1
7q-Amp	Del_6p25.3	0.582	1
Amp_12q15	Del_5q21.3	0.582	1
Del_5q11.2	Del_6q15	0.582	1
NCOR1	Amp_17q23.1	0.583	1
TP53	11p-Del	0.583	1
ZMYM3	Del_11q23.3	0.583	1
7q-Amp	Del_22q13.32	0.583	1
Amp_1q21.3	Amp_17q23.1	0.583	1
EYS	8p-Del	0.584	1
GPRIN2	Del_9p23	0.584	1
MAP3K1	SMAD2	0.584	1
MAP3K1	TFE3	0.584	1
MYB	Amp_19p13.12	0.584	1
NLGN3	Del_9p23	0.584	1
PIK3CA	Del_1p22.1	0.584	1
TGS1	Amp_19p13.12	0.584	1
ZFP36L2	4q-Del	0.584	1
CDKN1B	Del_12q23.1	0.585	1
ERBB2	4q-Del	0.585	1
GPRIN2	1q-Amp	0.585	1
GPS2	Del_12q23.1	0.585	1
GPS2	Del_12q24.31	0.585	1
MED23	Del_10q26.3	0.585	1
NLGN3	1q-Amp	0.585	1
PIK3R1	Del_10q26.3	0.585	1
RB1	4q-Del	0.585	1
20q-Amp	Del_17q21.31	0.585	1
1q-Del	Del_12q24.31	0.585	1
Amp_10q22.3	Amp_11p13	0.585	1
MAP3K1	Amp_12p13.33	0.586	1
MUC6	13q-Del	0.586	1
PIK3R1	13q-Del	0.586	1
C17orf95	Del_10q23.31	0.587	1
CDC42EP1	Del_10q23.31	0.587	1
FOXA1	Del_10q23.31	0.587	1
RBMX	Del_1p22.1	0.587	1
TAF1L	Del_2q37.3	0.587	1
20p-Amp	Del_5q21.3	0.587	1
5q-Del	Amp_19q13.42	0.587	1
Amp_13q34	Del_11q23.3	0.587	1
Amp_17q12	Del_9q21.11	0.587	1
APC	Amp_20q13.2	0.588	1
CBFB	11q-Del	0.588	1
IL1RAP	Amp_19q13.42	0.588	1
KCNN3	5p-Amp	0.588	1
SF3B1	Amp_20q13.2	0.588	1
TBL1XR1	5p-Amp	0.588	1
TBL1XR1	Amp_6q21	0.588	1
TBL1XR1	Amp_19q13.42	0.588	1
FGFR2	7p-Amp	0.589	1
GPRIN2	7p-Amp	0.589	1
KDM6A	Del_11q13.1	0.589	1
MLL3	Del_19q13.32	0.589	1
NF1	Del_16q24.3	0.589	1
SMAD2	Amp_12p13.33	0.589	1
SMAD2	Del_9q21.11	0.589	1
SMAD4	Amp_12p13.33	0.589	1
SMAD4	Del_9q21.11	0.589	1
TFE3	Amp_12p13.33	0.589	1
ZFP36L2	Amp_12p13.33	0.589	1
ZMYM3	20p-Amp	0.589	1
8q-Amp	Del_4q35.1	0.589	1
17p-Del	Amp_14q21.1	0.589	1
Del_7q36.1	Del_19q13.32	0.589	1
CTCF	HRNR	0.59	1
ERBB2	Amp_17q12	0.59	1
HRNR	MYH9	0.59	1
HRNR	SF3B1	0.59	1
IL1RAP	Del_1p36.13	0.59	1
MAP2K4	Del_18q23	0.59	1
VCPIP1	Del_1p36.13	0.59	1
7q-Amp	Del_5q11.2	0.59	1
Amp_1p22.3	Del_7q36.1	0.59	1
Amp_17q12	Del_4q35.1	0.59	1
CDC42EP1	9p-Del	0.591	1
CDC42EP1	Del_10q26.3	0.591	1
GATA3	MUC6	0.591	1
TAF1L	Amp_1q44	0.591	1
TPP2	Amp_15q26.3	0.591	1
ZFP36L1	Amp_15q26.3	0.591	1
11p-Del	Amp_10q22.3	0.591	1
ARID1A	RB1	0.592	1
PTEN	Del_11q13.1	0.592	1
RB1	Amp_12p13.33	0.592	1
AQP12A	Amp_8p11.23	0.593	1
CDH1	Amp_1p22.3	0.593	1
MED23	PTEN	0.593	1
MUC6	PTEN	0.593	1
RUNX1	Del_2q37.3	0.593	1
SMAD2	14q-Del	0.593	1
SMAD2	Amp_19q12	0.593	1
SMAD4	14q-Del	0.593	1
SMAD4	Amp_19q12	0.593	1
TAF1L	11p-Del	0.593	1
TAF1L	Del_9q34.2	0.593	1
TFE3	14q-Del	0.593	1
TFE3	Amp_19q12	0.593	1
TP53	Amp_12q15	0.593	1
USP36	Amp_17q12	0.593	1
ZFP36L2	14q-Del	0.593	1
ZFP36L2	17q-Del	0.593	1
ZFP36L2	Amp_19q12	0.593	1
ZFP36L2	Del_21q11.2	0.593	1
17q-Amp	Del_1p22.1	0.593	1
Amp_1q21.3	Del_11q23.3	0.593	1
Amp_4q13.3	Del_1p22.1	0.593	1
Amp_10p15.1	Del_17q21.31	0.593	1
ARID1A	17p-Del	0.594	1
C17orf95	GATA3	0.594	1
C17orf95	4p-Del	0.594	1
CDC42EP1	GATA3	0.594	1
CDC42EP1	4p-Del	0.594	1
CDH1	EYS	0.594	1
GATA3	NBPF9	0.594	1
HRNR	13q-Del	0.594	1
MAP2K4	Del_21q11.2	0.594	1
NBPF9	4p-Del	0.594	1
5p-Amp	Del_12p13.1	0.594	1
Amp_19q13.42	Del_12p13.1	0.594	1
ARID1A	1p-Del	0.595	1
ARID1A	Amp_14q21.1	0.595	1
NCDN	Del_19p13.3	0.595	1
RAB42	Del_19p13.3	0.595	1
TAF1L	22q-Del	0.595	1
ZBTB7C	Del_19p13.3	0.595	1
22q-Del	Amp_1q21.3	0.595	1
Amp_17q12	Del_5q11.2	0.595	1
Amp_19p13.12	Del_11q25	0.595	1
CTCF	Del_11q25	0.596	1
FGFR2	Del_7p22.3	0.596	1
GPRIN2	Del_7p22.3	0.596	1
HRNR	MAP3K1	0.596	1
IRS4	Amp_3p25.1	0.596	1
IRS4	Del_7p22.3	0.596	1
MED23	8p-Amp	0.596	1
NLGN3	Amp_3p25.1	0.596	1
NLGN3	Del_7p22.3	0.596	1
RUNX1	Del_3p21.31	0.596	1
SPEN	Amp_17q12	0.596	1
CASZ1	Amp_3q26.32	0.597	1
FRMPD2	Amp_3q26.32	0.597	1
GATA3	Del_17p12	0.597	1
MAP2K4	Del_17q21.31	0.597	1
MYB	22q-Del	0.597	1
TGS1	22q-Del	0.597	1
17q-Amp	Del_22q13.32	0.597	1
5p-Amp	Amp_10q22.3	0.597	1
Amp_4q13.3	Amp_8p11.21	0.597	1
Amp_4q13.3	Del_18q23	0.597	1
AQP12A	Del_2q37.3	0.598	1
C17orf95	18p-Del	0.598	1
CDC42EP1	8p-Amp	0.598	1
CDC42EP1	18p-Del	0.598	1
ICOSLG	Del_2q37.3	0.598	1
KRAS	Del_2q37.3	0.598	1
MLL3	ZFP36L2	0.598	1
MUC6	Del_6q15	0.598	1
SMAD2	Amp_12q15	0.598	1
SMAD2	Del_7q36.1	0.598	1
SP3	Del_2q37.3	0.598	1
SPEN	Del_1p22.1	0.598	1
TCP11	Del_2q37.3	0.598	1
TFE3	Amp_12q15	0.598	1
1q-Amp	Del_9q21.11	0.598	1
ERBB2	Del_11p15.5	0.599	1
ERBB2	Del_14q24.1	0.599	1
GATA3	Amp_19p13.12	0.599	1
KCNN3	Amp_13q34	0.599	1
MYB	Amp_10q22.3	0.599	1
TBL1XR1	Amp_13q34	0.599	1
VCPIP1	Amp_13q34	0.599	1
7q-Amp	17p-Del	0.599	1
11q-Del	Amp_1p22.3	0.599	1
CTCF	7q-Amp	0.6	1
EYS	Del_4p16.3	0.6	1
FOXA1	5q-Del	0.6	1
MYH9	7q-Amp	0.6	1
RB1	Amp_19q12	0.6	1
RB1	Del_21q11.2	0.6	1
RUNX1	Del_15q13.1	0.6	1
Amp_20q13.2	Del_7q36.1	0.6	1
C17orf95	18q-Del	0.601	1
CDC42EP1	18q-Del	0.601	1
CDH1	Del_11q23.3	0.601	1
EYS	8q-Amp	0.601	1
FBXW7	Del_5q21.3	0.601	1
MLL3	Amp_10p15.1	0.601	1
NCDN	Del_11p15.5	0.601	1
NF1	1q-Amp	0.601	1
RAB42	Del_11p15.5	0.601	1
RAB42	Del_14q24.1	0.601	1
RUNX1	11p-Del	0.601	1
ZBTB7C	Del_14q24.1	0.601	1
ZMYM3	Del_5q21.3	0.601	1
9p-Del	Amp_14q21.1	0.601	1
GPRIN2	Amp_8p11.21	0.602	1
ICOSLG	Del_9q34.2	0.602	1
IRS4	Amp_8p11.21	0.602	1
KRAS	11p-Del	0.602	1
KRAS	Del_9q34.2	0.602	1
MUC6	18q-Del	0.602	1
NLGN3	Amp_8p11.21	0.602	1
NLGN3	Del_22q13.32	0.602	1
SP3	11p-Del	0.602	1
SP3	Del_9q34.2	0.602	1
TCP11	11p-Del	0.602	1
TCP11	Del_9q34.2	0.602	1
ZFP36L1	Del_11q23.3	0.602	1
8q-Amp	Del_12p13.1	0.602	1
Amp_8p11.21	Del_11p15.5	0.602	1
Amp_12p13.33	Del_11q23.3	0.602	1
HRNR	Amp_10p15.1	0.603	1
MAP2K4	Amp_12q15	0.603	1
4q-Del	Amp_11p13	0.603	1
HRNR	Amp_19p13.12	0.604	1
IL1RAP	Del_3p21.31	0.604	1
IL1RAP	Del_9p21.3	0.604	1
TBL1XR1	Del_9p21.3	0.604	1
VCPIP1	Del_3p21.31	0.604	1
VCPIP1	Del_9p21.3	0.604	1
C17orf95	6q-Del	0.605	1
NBPF9	6q-Del	0.605	1
Amp_19q13.42	Del_9p23	0.605	1
Del_16q24.3	Del_21q11.2	0.605	1
EYS	Del_1p22.1	0.606	1
FGFR2	Del_19p13.3	0.606	1
NCDN	PIK3CA	0.606	1
PIK3CA	RAB42	0.606	1
7p-Amp	Amp_12q15	0.606	1
CASZ1	Amp_10p15.1	0.607	1
MYB	17q-Amp	0.607	1
MYB	Amp_4q13.3	0.607	1
PIK3R1	6q-Del	0.607	1
SMAD2	22q-Del	0.607	1
SP3	Del_16q24.3	0.607	1
TCP11	Del_16q24.3	0.607	1
TGS1	Amp_4q13.3	0.607	1
16q-Del	Del_19p13.3	0.607	1
Amp_3q26.32	Del_1p22.1	0.607	1
IL1RAP	11q-Del	0.608	1
MYB	20q-Amp	0.608	1
NCOR1	Del_5q11.2	0.608	1
TBL1XR1	11q-Del	0.608	1
TBX3	Amp_17q23.1	0.608	1
8q-Amp	Del_10q23.31	0.608	1
Amp_17q23.1	Del_14q24.1	0.608	1
FOXA1	Amp_11p13	0.609	1
MED23	Amp_8p11.23	0.609	1
NLGN3	Amp_20q13.2	0.609	1
RUNX1	Del_19q13.32	0.609	1
TPP2	13q-Del	0.609	1
5p-Amp	Del_13q14.2	0.609	1
Amp_19p13.12	Del_11q23.3	0.609	1
TGS1	Amp_8q24.21	0.61	1
17q-Amp	Del_9q34.2	0.61	1
11p-Del	Amp_4q13.3	0.61	1
FBXW7	Del_3p21.31	0.611	1
GPRIN2	Amp_19p13.12	0.611	1
NLGN3	Amp_19p13.12	0.611	1
ZMYM3	Del_9p21.3	0.611	1
16p-Amp	Del_10q26.3	0.611	1
Amp_17q23.1	Del_7q36.1	0.611	1
CBFB	EYS	0.612	1
CDKN1B	Del_19q13.32	0.612	1
FBXW7	Amp_6p23	0.612	1
GPS2	Del_19q13.32	0.612	1
IL1RAP	1p-Del	0.612	1
IL1RAP	Amp_14q21.1	0.612	1
KCNN3	Amp_14q21.1	0.612	1
MAP2K4	Amp_10q22.3	0.612	1
PTEN	Amp_8p11.23	0.612	1
PTPN22	Del_19q13.32	0.612	1
SMAD2	9q-Del	0.612	1
SMAD4	15q-Del	0.612	1
SMAD4	9q-Del	0.612	1
TAF1L	Del_18q23	0.612	1
TBL1XR1	1p-Del	0.612	1
TBL1XR1	Amp_14q21.1	0.612	1
TFE3	15q-Del	0.612	1
VCPIP1	Amp_14q21.1	0.612	1
ZFP36L2	15q-Del	0.612	1
ZFP36L2	9q-Del	0.612	1
ZFP36L2	Del_20p13	0.612	1
ZMYM3	Amp_6p23	0.612	1
MAP2K4	Del_6q27	0.613	1
TAF1L	Del_6p25.3	0.613	1
TP53	7p-Amp	0.613	1
ZFP36L1	5q-Del	0.613	1
ZFP36L2	Amp_17q23.1	0.613	1
17q-Amp	5p-Amp	0.613	1
8p-Amp	Del_11q25	0.613	1
FRMPD2	Amp_17q12	0.614	1
ICOSLG	Del_6p25.3	0.614	1
KRAS	Del_6p25.3	0.614	1
MLL3	4q-Del	0.614	1
RUFY1	Del_6p25.3	0.614	1
RUNX1	16p-Amp	0.614	1
SP3	Del_6p25.3	0.614	1
C17orf95	Del_11q13.1	0.615	1
CDC42EP1	20p-Amp	0.615	1
CDC42EP1	Del_11q13.1	0.615	1
FGFR2	Del_14q24.1	0.615	1
GPRIN2	Del_11p15.5	0.615	1
KDM6A	11q-Del	0.615	1
MAP2K4	16q-Del	0.615	1
NBPF9	20p-Amp	0.615	1
NBPF9	Del_11q13.1	0.615	1
NCDN	Del_15q13.1	0.615	1
PAX2	Del_15q13.1	0.615	1
RAB42	Del_4q35.1	0.615	1
RAB42	Del_15q13.1	0.615	1
TAF1L	1q-Amp	0.615	1
ZBTB7C	Del_4q35.1	0.615	1
ZNF362	Del_15q13.1	0.615	1
20p-Amp	Amp_1q21.3	0.615	1
8p-Amp	Amp_15q26.3	0.615	1
18p-Del	Amp_15q26.3	0.615	1
Amp_1p22.3	Del_22q13.32	0.615	1
Amp_1q21.3	Del_11q13.1	0.615	1
Amp_11p13	Del_9q21.11	0.615	1
CDKN1B	Del_18q23	0.616	1
FGFR2	8p-Del	0.616	1
FGFR2	Del_16q24.3	0.616	1
GPRIN2	8p-Del	0.616	1
PTEN	Amp_15q26.3	0.616	1
20p-Amp	Amp_3p25.1	0.616	1
APC	Del_2q37.3	0.617	1
CDH1	MYB	0.617	1
FRMPD2	Del_10q23.31	0.617	1
MAP3K1	7q-Amp	0.617	1
MLL3	8p-Del	0.617	1
MYH9	Del_2q37.3	0.617	1
RB1	Amp_1q44	0.617	1
TP53	18q-Del	0.617	1
CDKN1B	7p-Amp	0.618	1
FOXA1	5p-Amp	0.618	1
IL1RAP	Del_12q23.1	0.618	1
IL1RAP	Del_12q24.31	0.618	1
MAP2K4	18p-Del	0.618	1
NCOR1	Amp_11p13	0.618	1
PTPN22	7p-Amp	0.618	1
TBL1XR1	Del_12q23.1	0.618	1
TBL1XR1	Del_12q24.31	0.618	1
TPP2	Amp_11p13	0.618	1
VCPIP1	Del_12q23.1	0.618	1
ZFP36L1	Amp_11p13	0.618	1
1q-Amp	8q-Amp	0.618	1
5p-Amp	4q-Del	0.618	1
4q-Del	Amp_19q13.42	0.618	1
TPP2	Del_6q15	0.619	1
Amp_17q23.1	Del_5q11.2	0.619	1
ACTL6B	Del_17q21.31	0.62	1
CDH1	Del_11q25	0.62	1
FBXW7	7q-Amp	0.62	1
KDM6A	7q-Amp	0.62	1
PIK3R1	Del_6q27	0.62	1
Amp_8p11.23	Amp_19q12	0.62	1
APC	RUNX1	0.621	1
MAP2K4	MUC6	0.621	1
MAP2K4	PIK3R1	0.621	1
RAB42	16p-Amp	0.621	1
7p-Amp	Del_11q25	0.621	1
AQP12A	Del_12p13.1	0.622	1
CASZ1	9p-Del	0.622	1
CDC42EP1	Del_5q21.3	0.622	1
FRMPD2	Del_10q26.3	0.622	1
ICOSLG	Del_12p13.1	0.622	1
IL1RAP	Del_8p23.2	0.622	1
KRAS	Del_12p13.1	0.622	1
MLL3	Amp_3p25.1	0.622	1
PIK3CA	TBX3	0.622	1
RBMX	9p-Del	0.622	1
RUFY1	Del_12p13.1	0.622	1
TCP11	Del_12p13.1	0.622	1
20p-Amp	Del_1p36.13	0.622	1
11p-Del	Del_12p13.1	0.622	1
Amp_12q15	Del_7p22.3	0.622	1
APC	11p-Del	0.623	1
CTCF	11p-Del	0.623	1
CTCF	Del_9q34.2	0.623	1
KCNN3	8q-Amp	0.623	1
MUC6	20p-Amp	0.623	1
PIK3R1	20p-Amp	0.623	1
SF3B1	11p-Del	0.623	1
VCPIP1	8q-Amp	0.623	1
EYS	11q-Del	0.624	1
MLL3	Amp_11q13.3	0.624	1
NF1	11p-Del	0.624	1
NF1	Del_9q34.2	0.624	1
PAX2	20q-Amp	0.624	1
RAB42	20q-Amp	0.624	1
RAB42	Amp_11q14.1	0.624	1
TPP2	Amp_6q21	0.624	1
ZBTB7C	Amp_11q14.1	0.624	1
5q-Del	Amp_12q15	0.624	1
ACTL6B	Amp_3p25.1	0.625	1
ACTL6B	Del_7p22.3	0.625	1
ARID1A	TAF1L	0.625	1
CDKN1B	Amp_3p25.1	0.625	1
CDKN1B	Del_7p22.3	0.625	1
EYS	Amp_1p22.3	0.625	1
GPS2	Amp_3p25.1	0.625	1
GPS2	Del_7p22.3	0.625	1
MAP2K4	17q-Amp	0.625	1
CBFB	Amp_8p11.23	0.626	1
GATA3	16p-Amp	0.626	1
GPRIN2	Amp_10q22.3	0.626	1
MAP2K4	18q-Del	0.626	1
NLGN3	Amp_10q22.3	0.626	1
RUNX1	Del_6p25.3	0.626	1
SPEN	Del_9q21.11	0.626	1
7q-Amp	13q-Del	0.626	1
7q-Amp	Del_9q21.11	0.626	1
22q-Del	Amp_1q44	0.626	1
FGFR2	Del_11q23.3	0.627	1
FRMPD2	GATA3	0.627	1
GATA3	RBMX	0.627	1
IRS4	Del_11q23.3	0.627	1
NF1	Del_19q13.32	0.627	1
TGS1	Del_1p22.1	0.627	1
7p-Amp	Del_18q23	0.627	1
ARID1A	Del_17p12	0.628	1
ERBB2	Del_15q13.1	0.628	1
HRNR	Amp_10q22.3	0.628	1
NF1	Del_3p21.31	0.628	1
17q-Amp	Del_9p23	0.628	1
8q-Amp	Del_7q36.1	0.628	1
5q-Del	Amp_17q23.1	0.628	1
ERBB2	15q-Del	0.629	1
ERBB2	9q-Del	0.629	1
FOXA1	RB1	0.629	1
NBPF9	Amp_6p23	0.629	1
SPEN	Del_11q25	0.629	1
22q-Del	Amp_8q24.21	0.629	1
CDH1	NCDN	0.63	1
CDH1	PAX2	0.63	1
CDH1	RAB42	0.63	1
CDH1	ZNF362	0.63	1
HRNR	MED23	0.63	1
NCOR1	Del_17q21.31	0.63	1
PTEN	Del_4q35.1	0.63	1
AQP12A	MAP3K1	0.631	1
ICOSLG	MAP3K1	0.631	1
ICOSLG	4q-Del	0.631	1
KDM6A	Amp_8p11.21	0.631	1
KRAS	MAP3K1	0.631	1
KRAS	4q-Del	0.631	1
MAP3K1	RUFY1	0.631	1
MYB	16p-Del	0.631	1
RUNX1	Amp_3p25.1	0.631	1
TGS1	16p-Del	0.631	1
ZMYM3	Amp_8p11.21	0.631	1
ACTL6B	Del_9p23	0.632	1
GPS2	Del_9p23	0.632	1
MAP2K4	15q-Del	0.632	1
MYH9	TBX3	0.632	1
RB1	Del_11q25	0.632	1
SF3B1	TBX3	0.632	1
TFE3	Amp_15q26.3	0.632	1
ZFP36L2	Amp_15q26.3	0.632	1
8p-Del	Amp_13q34	0.632	1
GPRIN2	17q-Amp	0.633	1
GPRIN2	Amp_4q13.3	0.633	1
IRS4	17q-Amp	0.633	1
IRS4	Amp_4q13.3	0.633	1
NCDN	Del_4p16.3	0.633	1
NLGN3	17q-Amp	0.633	1
NLGN3	Amp_4q13.3	0.633	1
PAX2	Del_5q11.2	0.633	1
RAB42	Del_4p16.3	0.633	1
RAB42	Del_5q11.2	0.633	1
TAF1L	Del_9p23	0.633	1
ZBTB7C	Del_4p16.3	0.633	1
ZBTB7C	Del_5q11.2	0.633	1
ZNF362	Del_5q11.2	0.633	1
GATA3	HRNR	0.634	1
HRNR	4p-Del	0.634	1
RBMX	13q-Del	0.634	1
TBX3	11q-Del	0.634	1
AQP12A	Amp_12p13.33	0.635	1
ICOSLG	Del_9q21.11	0.635	1
KRAS	Amp_12p13.33	0.635	1
KRAS	Del_9q21.11	0.635	1
MED23	Del_5q21.3	0.635	1
MLL3	9p-Del	0.635	1
PIK3R1	Del_5q21.3	0.635	1
SP3	Amp_12p13.33	0.635	1
SPEN	Amp_19q12	0.635	1
TCP11	Amp_12p13.33	0.635	1
TCP11	Del_9q21.11	0.635	1
ZFP36L1	Amp_13q34	0.635	1
7p-Amp	Amp_6p23	0.635	1
7p-Amp	Del_19q13.32	0.635	1
ACTL6B	Amp_11q13.3	0.636	1
ARID1A	Del_1p36.13	0.636	1
EYS	17p-Del	0.636	1
MAP2K4	8q-Amp	0.636	1
MYB	Amp_3q26.32	0.636	1
NCDN	Del_1p22.1	0.636	1
ZBTB7C	Del_1p22.1	0.636	1
ZNF362	Del_1p22.1	0.636	1
17q-Amp	Amp_13q34	0.636	1
Amp_11q14.1	Amp_15q26.3	0.636	1
GPRIN2	Del_4q35.1	0.637	1
IRS4	Del_15q13.1	0.637	1
NLGN3	Del_15q13.1	0.637	1
Amp_1q44	Del_11q13.1	0.637	1
MAP3K1	Del_2q37.3	0.638	1
TP53	ZFP36L2	0.638	1
20p-Amp	Del_4p16.3	0.638	1
ACTL6B	TP53	0.639	1
AQP12A	Amp_19q12	0.639	1
AQP12A	Del_21q11.2	0.639	1
CASZ1	17p-Del	0.639	1
CDKN1B	Amp_19p13.12	0.639	1
FGFR2	16q-Del	0.639	1
GATA3	Amp_11q14.1	0.639	1
GPRIN2	16q-Del	0.639	1
GPS2	Amp_19p13.12	0.639	1
ICOSLG	14q-Del	0.639	1
ICOSLG	17q-Del	0.639	1
ICOSLG	Del_21q11.2	0.639	1
KRAS	14q-Del	0.639	1
KRAS	17q-Del	0.639	1
KRAS	Amp_19q12	0.639	1
KRAS	Del_21q11.2	0.639	1
MAP3K1	TAF1L	0.639	1
MLL3	Amp_11p13	0.639	1
NCOR1	Amp_1q21.3	0.639	1
RUFY1	17q-Del	0.639	1
RUFY1	Amp_19q12	0.639	1
RUFY1	Del_21q11.2	0.639	1
RUNX1	16q-Del	0.639	1
SP3	17q-Del	0.639	1
SP3	Amp_19q12	0.639	1
SP3	Del_21q11.2	0.639	1
TCP11	14q-Del	0.639	1
TCP11	17q-Del	0.639	1
TCP11	Amp_19q12	0.639	1
TP53	1q-Del	0.639	1
1q-Amp	Amp_20q13.2	0.639	1
20q-Amp	4p-Del	0.639	1
7p-Amp	15q-Del	0.639	1
8p-Amp	Del_12q23.1	0.639	1
1q-Del	Amp_19p13.12	0.639	1
FBXW7	RUNX1	0.64	1
GATA3	11p-Del	0.64	1
HRNR	17q-Amp	0.64	1
MED23	SPEN	0.64	1
MED23	7q-Amp	0.64	1
MUC6	7q-Amp	0.64	1
MYB	PTEN	0.64	1
PIK3R1	7q-Amp	0.64	1
PTEN	TGS1	0.64	1
Amp_1q21.3	Del_4q35.1	0.64	1
Amp_1q21.3	Del_6q15	0.64	1
TGS1	Amp_1p22.3	0.641	1
18p-Del	Amp_8p11.21	0.641	1
6q-Del	Amp_14q21.1	0.641	1
Amp_12q15	Amp_19q12	0.641	1
Amp_19q12	Del_7q36.1	0.641	1
Del_11q13.1	Del_12p13.1	0.641	1
APC	Del_6p25.3	0.642	1
CASZ1	TP53	0.642	1
CTCF	22q-Del	0.642	1
CTCF	Del_6p25.3	0.642	1
HRNR	8p-Amp	0.642	1
HRNR	18p-Del	0.642	1
KCNN3	Del_19q13.32	0.642	1
MYH9	Del_6p25.3	0.642	1
NCOR1	Amp_20q13.2	0.642	1
RUNX1	Del_12p13.1	0.642	1
SF3B1	22q-Del	0.642	1
TBL1XR1	Del_19q13.32	0.642	1
VCPIP1	Del_19q13.32	0.642	1
ZBTB7C	Amp_3q26.32	0.642	1
17q-Del	Amp_1q21.3	0.642	1
CASZ1	MAP2K4	0.643	1
FRMPD2	MAP2K4	0.643	1
MLL3	7q-Amp	0.643	1
PIK3CA	Del_7q36.1	0.643	1
7q-Amp	Amp_10q22.3	0.643	1
7q-Amp	Amp_12q15	0.643	1
8p-Amp	17q-Del	0.643	1
8q-Amp	16q-Del	0.643	1
18p-Del	Amp_19q12	0.643	1
4q-Del	Amp_20q13.2	0.643	1
5q-Del	Amp_1q21.3	0.643	1
5q-Del	Amp_14q21.1	0.643	1
Amp_8p11.21	Del_6p25.3	0.643	1
Amp_10q22.3	Amp_14q21.1	0.643	1
AQP12A	Amp_12q15	0.644	1
ARID1A	Del_19q13.32	0.644	1
ICOSLG	Amp_12q15	0.644	1
ICOSLG	Del_22q13.32	0.644	1
KRAS	Amp_12q15	0.644	1
KRAS	Del_7q36.1	0.644	1
NCDN	TP53	0.644	1
PAX2	TP53	0.644	1
RUFY1	Amp_8p11.21	0.644	1
RUFY1	Amp_12q15	0.644	1
RUFY1	Del_22q13.32	0.644	1
SP3	Amp_12q15	0.644	1
SP3	Del_7q36.1	0.644	1
TCP11	Del_7q36.1	0.644	1
TP53	ZBTB7C	0.644	1
TP53	ZNF362	0.644	1
20q-Amp	17q-Del	0.644	1
7q-Amp	Del_6q15	0.644	1
Amp_19q13.42	Del_6q27	0.644	1
Del_10q23.31	Del_16q24.3	0.644	1
ERBB2	Amp_1q21.3	0.645	1
IRS4	16p-Amp	0.645	1
PAX2	Amp_1p22.3	0.645	1
RB1	Amp_1q21.3	0.645	1
TAF1L	Del_13q14.2	0.645	1
ZNF362	Amp_1p22.3	0.645	1
FOXA1	Del_18q23	0.646	1
MED23	Amp_6p23	0.646	1
MUC6	Amp_6p23	0.646	1
PIK3R1	Amp_6p23	0.646	1
TAF1L	Del_9q21.11	0.646	1
TPP2	Amp_14q21.1	0.646	1
USP36	1p-Del	0.646	1
ZFP36L1	Amp_14q21.1	0.646	1
7p-Amp	Amp_17q12	0.646	1
7q-Amp	Del_18q23	0.646	1
Amp_13q34	Del_9p23	0.646	1
ARID1A	Del_9q34.2	0.647	1
C17orf95	Amp_8q24.21	0.647	1
NCDN	Amp_10p15.1	0.647	1
PAX2	Amp_10p15.1	0.647	1
PTEN	13q-Del	0.647	1
VCPIP1	17p-Del	0.647	1
ZBTB7C	Amp_10p15.1	0.647	1
ZMYM3	8p-Del	0.647	1
ZNF362	Amp_10p15.1	0.647	1
CBFB	6q-Del	0.648	1
MUC6	Del_11q23.3	0.648	1
NF1	20q-Amp	0.648	1
NF1	Del_6p25.3	0.648	1
TBX3	Amp_3p25.1	0.648	1
TBX3	Amp_11q14.1	0.648	1
HRNR	18q-Del	0.649	1
ICOSLG	Amp_20q13.2	0.649	1
IL1RAP	7p-Amp	0.649	1
KCNN3	7p-Amp	0.649	1
RUFY1	Amp_20q13.2	0.649	1
TBL1XR1	7p-Amp	0.649	1
TCP11	Amp_20q13.2	0.649	1
VCPIP1	7p-Amp	0.649	1
C17orf95	8q-Amp	0.65	1
CDKN1B	Del_17p12	0.65	1
FGFR2	Amp_11q14.1	0.65	1
GPRIN2	Amp_11q14.1	0.65	1
IRS4	20q-Amp	0.65	1
MAP3K1	Del_9q34.2	0.65	1
MED23	Amp_11q13.3	0.65	1
MUC6	Amp_11q13.3	0.65	1
NLGN3	20q-Amp	0.65	1
PIK3CA	Del_12q23.1	0.65	1
PTPN22	Del_17p12	0.65	1
SPEN	9p-Del	0.65	1
7q-Amp	9p-Del	0.65	1
7q-Amp	Del_10q26.3	0.65	1
18p-Del	Amp_10q22.3	0.65	1
Amp_6p23	Del_11q25	0.65	1
Amp_8p11.21	Del_1p22.1	0.65	1
Del_7p22.3	Del_18q23	0.65	1
CDC42EP1	Del_2q37.3	0.651	1
HRNR	15q-Del	0.651	1
HRNR	9q-Del	0.651	1
KDM6A	TBX3	0.651	1
MYH9	Amp_17q23.1	0.651	1
SF3B1	Amp_17q23.1	0.651	1
1p-Del	Amp_17q23.1	0.651	1
Amp_11p13	Del_14q24.1	0.651	1
CDKN1B	Del_19p13.3	0.652	1
FOXA1	Del_17q21.31	0.652	1
GPS2	Del_19p13.3	0.652	1
PTPN22	Del_19p13.3	0.652	1
RAB42	Del_17p12	0.652	1
SMAD2	5q-Del	0.652	1
SMAD4	5q-Del	0.652	1
TPP2	Del_12q24.31	0.652	1
USP36	Del_12q23.1	0.652	1
USP36	Del_12q24.31	0.652	1
ZBTB7C	Del_17p12	0.652	1
ZFP36L1	Del_12q23.1	0.652	1
ZFP36L1	Del_12q24.31	0.652	1
CDKN1B	Amp_10q22.3	0.653	1
ERBB2	Del_6q27	0.653	1
FOXA1	Amp_14q21.1	0.653	1
GPS2	Amp_10q22.3	0.653	1
PIK3CA	TGS1	0.653	1
PIK3CA	Amp_3p25.1	0.653	1
PIK3CA	Del_7p22.3	0.653	1
PTEN	Amp_11q14.1	0.653	1
TAF1L	14q-Del	0.653	1
1q-Del	Amp_10q22.3	0.653	1
FGFR2	22q-Del	0.654	1
GPRIN2	22q-Del	0.654	1
KDM6A	11p-Del	0.654	1
KRAS	8p-Del	0.654	1
MLL3	Amp_6q21	0.654	1
MLL3	Amp_19q13.42	0.654	1
NCDN	Del_10q23.31	0.654	1
NLGN3	22q-Del	0.654	1
RAB42	Del_10q23.31	0.654	1
RUFY1	8p-Del	0.654	1
SP3	8p-Del	0.654	1
ZNF362	Del_10q23.31	0.654	1
Amp_12q15	Del_7q36.1	0.654	1
Amp_19p13.12	Del_11q13.1	0.654	1
APC	Del_12p13.1	0.655	1
ARID1A	Del_15q13.1	0.655	1
C17orf95	11p-Del	0.655	1
CASZ1	Del_17p12	0.655	1
CDC42EP1	11p-Del	0.655	1
CDC42EP1	Del_9q34.2	0.655	1
CTCF	Del_17q21.31	0.655	1
ERBB2	Del_22q13.32	0.655	1
IL1RAP	Del_7p22.3	0.655	1
KCNN3	Amp_3p25.1	0.655	1
NBPF9	11p-Del	0.655	1
SPEN	17q-Amp	0.655	1
SPEN	Amp_4q13.3	0.655	1
TBL1XR1	Amp_3p25.1	0.655	1
TBL1XR1	Del_7p22.3	0.655	1
TGS1	Del_10q23.31	0.655	1
TPP2	Del_11q25	0.655	1
VCPIP1	Amp_3p25.1	0.655	1
ZFP36L1	Del_11q25	0.655	1
Amp_10q22.3	Del_12q23.1	0.655	1
GPRIN2	16p-Del	0.656	1
IRS4	16p-Del	0.656	1
MAP3K1	9q-Del	0.656	1
MLL3	Amp_19p13.12	0.656	1
NLGN3	16p-Del	0.656	1
16p-Amp	Amp_14q21.1	0.656	1
AQP12A	15q-Del	0.657	1
AQP12A	Del_20p13	0.657	1
ICOSLG	15q-Del	0.657	1
ICOSLG	Del_20p13	0.657	1
KRAS	15q-Del	0.657	1
KRAS	9q-Del	0.657	1
KRAS	Del_20p13	0.657	1
MUC6	Del_8p23.2	0.657	1
NCDN	Del_10q26.3	0.657	1
RAB42	9p-Del	0.657	1
RAB42	Del_10q26.3	0.657	1
RUFY1	15q-Del	0.657	1
RUNX1	Del_22q13.32	0.657	1
SMAD4	Amp_11p13	0.657	1
SP3	15q-Del	0.657	1
SP3	9q-Del	0.657	1
SP3	Del_20p13	0.657	1
TCP11	15q-Del	0.657	1
TCP11	9q-Del	0.657	1
TCP11	Del_20p13	0.657	1
ZBTB7C	9p-Del	0.657	1
ZFP36L2	Amp_11p13	0.657	1
ZNF362	Del_10q26.3	0.657	1
1q-Amp	Amp_19q13.42	0.657	1
5p-Amp	Amp_1p22.3	0.657	1
Amp_3p25.1	Del_16q24.3	0.657	1
CASZ1	20p-Amp	0.658	1
CASZ1	Del_11q13.1	0.658	1
MAP2K4	20p-Amp	0.658	1
RB1	Amp_15q26.3	0.658	1
RBMX	20p-Amp	0.658	1
RBMX	Del_11q13.1	0.658	1
8p-Amp	Del_7q36.1	0.658	1
18q-Del	Amp_10q22.3	0.658	1
CDH1	GPRIN2	0.659	1
RUNX1	4q-Del	0.659	1
TAF1L	Del_7q36.1	0.659	1
6q-Del	Del_12q24.31	0.659	1
Amp_1q21.3	Amp_11q14.1	0.659	1
ACTL6B	17q-Amp	0.66	1
ACTL6B	Amp_4q13.3	0.66	1
ACTL6B	Del_14q24.1	0.66	1
APC	8q-Amp	0.66	1
CDKN1B	Del_11p15.5	0.66	1
EYS	5p-Amp	0.66	1
EYS	Amp_6q21	0.66	1
GATA3	RAB42	0.66	1
GATA3	ZNF362	0.66	1
GPS2	17q-Amp	0.66	1
GPS2	Amp_4q13.3	0.66	1
GPS2	Del_14q24.1	0.66	1
MED23	RUNX1	0.66	1
MUC6	RUNX1	0.66	1
PIK3R1	RUNX1	0.66	1
PTPN22	Amp_4q13.3	0.66	1
RAB42	4p-Del	0.66	1
TGS1	9p-Del	0.66	1
ZBTB7C	4p-Del	0.66	1
ZFP36L2	Amp_17q12	0.66	1
1q-Amp	Del_7q36.1	0.66	1
1q-Del	Amp_4q13.3	0.66	1
CASZ1	7q-Amp	0.661	1
FRMPD2	7q-Amp	0.661	1
GPRIN2	Amp_17q23.1	0.661	1
IRS4	Amp_17q23.1	0.661	1
MLL3	Amp_11q14.1	0.661	1
PAX2	1q-Amp	0.661	1
ZBTB7C	1q-Amp	0.661	1
ZNF362	1q-Amp	0.661	1
17q-Amp	4p-Del	0.661	1
5p-Amp	16p-Del	0.661	1
7p-Amp	Del_7p22.3	0.661	1
FOXA1	Del_12q23.1	0.662	1
FOXA1	Del_12q24.31	0.662	1
MAP2K4	16p-Del	0.662	1
SMAD2	5p-Amp	0.662	1
SMAD2	Amp_6q21	0.662	1
SMAD2	Amp_19q13.42	0.662	1
SMAD4	Amp_6q21	0.662	1
SMAD4	Amp_19q13.42	0.662	1
TFE3	5p-Amp	0.662	1
TPP2	Del_9p21.3	0.662	1
ZFP36L1	Del_3p21.31	0.662	1
ZFP36L1	Del_9p21.3	0.662	1
ZFP36L2	5p-Amp	0.662	1
ZFP36L2	Amp_6q21	0.662	1
20q-Amp	Del_16q24.3	0.662	1
CASZ1	Del_16q24.3	0.663	1
FGFR2	Del_4p16.3	0.663	1
HRNR	Amp_11q13.3	0.663	1
IRS4	Del_4p16.3	0.663	1
NCDN	8p-Amp	0.663	1
NCDN	18p-Del	0.663	1
RAB42	8p-Amp	0.663	1
RAB42	18p-Del	0.663	1
ZBTB7C	8p-Amp	0.663	1
ZNF362	8p-Amp	0.663	1
ZNF362	18p-Del	0.663	1
Amp_12q15	Del_1p36.13	0.663	1
CDKN1B	Del_22q13.32	0.664	1
GPS2	Del_22q13.32	0.664	1
IRS4	PTEN	0.664	1
NF1	Del_12p13.1	0.664	1
PTPN22	Amp_8p11.21	0.664	1
PTPN22	Del_22q13.32	0.664	1
1q-Del	Amp_8p11.21	0.664	1
ARID1A	Amp_3p25.1	0.665	1
GATA3	TGS1	0.665	1
MAP2K4	MYB	0.665	1
TGS1	Amp_17q12	0.665	1
ZFP36L1	11q-Del	0.665	1
20p-Amp	Del_3p21.31	0.665	1
CDC42EP1	Del_6p25.3	0.666	1
IL1RAP	Del_18q23	0.666	1
NBPF9	Del_6p25.3	0.666	1
NCDN	18q-Del	0.666	1
RAB42	18q-Del	0.666	1
ZNF362	18q-Del	0.666	1
CTCF	4q-Del	0.667	1
GPS2	NCOR1	0.667	1
MAP3K1	SF3B1	0.667	1
NBPF9	17p-Del	0.667	1
NCOR1	PTPN22	0.667	1
NCOR1	1q-Del	0.667	1
TAF1L	Del_11q23.3	0.667	1
20q-Amp	Amp_1q44	0.667	1
Amp_1q44	Del_19q13.32	0.667	1
Amp_4q13.3	Del_19p13.3	0.667	1
CBFB	20p-Amp	0.668	1
GPRIN2	Del_1p22.1	0.668	1
IL1RAP	Amp_19p13.12	0.668	1
TBL1XR1	Amp_19p13.12	0.668	1
5p-Amp	1p-Del	0.668	1
1p-Del	Amp_6q21	0.668	1
Amp_10q22.3	Del_11q25	0.668	1
FRMPD2	Del_5q21.3	0.669	1
NCDN	6q-Del	0.669	1
PAX2	6q-Del	0.669	1
RAB42	6q-Del	0.669	1
TAF1L	Del_14q24.1	0.669	1
ZBTB7C	6q-Del	0.669	1
ARID1A	Del_6p25.3	0.67	1
IL1RAP	Del_17q21.31	0.67	1
KCNN3	Del_17q21.31	0.67	1
MAP2K4	1q-Amp	0.67	1
MAP3K1	Del_11q13.1	0.67	1
MUC6	TBX3	0.67	1
MYB	8p-Amp	0.67	1
SF3B1	Del_9p23	0.67	1
SPEN	9q-Del	0.67	1
TBL1XR1	Del_17q21.31	0.67	1
TGS1	8p-Amp	0.67	1
VCPIP1	Del_17q21.31	0.67	1
ZFP36L2	Amp_8q24.21	0.67	1
7q-Amp	15q-Del	0.67	1
7q-Amp	9q-Del	0.67	1
8p-Amp	Amp_4q13.3	0.67	1
Amp_10q22.3	Del_9q21.11	0.67	1
CDC42EP1	Amp_1q21.3	0.671	1
CDKN1B	Amp_20q13.2	0.671	1
8p-Amp	9p-Del	0.671	1
1q-Del	Amp_20q13.2	0.671	1
Amp_20q13.2	Del_1p22.1	0.671	1
C17orf95	Del_13q14.2	0.672	1
CDC42EP1	Del_13q14.2	0.672	1
KDM6A	Del_6p25.3	0.672	1
SMAD2	Amp_13q34	0.672	1
SMAD4	Amp_13q34	0.672	1
7q-Amp	18q-Del	0.672	1
7q-Amp	Del_9p23	0.672	1
ERBB2	Del_1p36.13	0.673	1
Amp_10p15.1	Del_11q25	0.673	1
APC	Amp_12p13.33	0.674	1
CDC42EP1	Del_12p13.1	0.674	1
FOXA1	13q-Del	0.674	1
HRNR	MYB	0.674	1
MYB	8q-Amp	0.674	1
NCOR1	1p-Del	0.674	1
RUNX1	Amp_10q22.3	0.674	1
SF3B1	Amp_12p13.33	0.674	1
TGS1	8q-Amp	0.674	1
ZFP36L2	13q-Del	0.674	1
13q-Del	Amp_14q21.1	0.674	1
18q-Del	Del_5q21.3	0.674	1
22q-Del	Amp_1p22.3	0.674	1
ICOSLG	Amp_15q26.3	0.675	1
KRAS	Amp_15q26.3	0.675	1
RUNX1	14q-Del	0.675	1
SP3	Amp_15q26.3	0.675	1
TCP11	Amp_15q26.3	0.675	1
USP36	Del_19q13.32	0.675	1
ZFP36L1	Del_19q13.32	0.675	1
FOXA1	Del_22q13.32	0.676	1
NLGN3	Amp_3q26.32	0.676	1
16p-Amp	Amp_1p22.3	0.676	1
CTCF	FOXA1	0.677	1
CTCF	1q-Amp	0.677	1
EYS	Amp_13q34	0.677	1
PTPN22	8p-Del	0.677	1
SF3B1	1q-Amp	0.677	1
17q-Amp	4q-Del	0.677	1
8q-Amp	Del_9p23	0.677	1
16p-Del	Amp_3q26.32	0.677	1
NCDN	Del_11q13.1	0.678	1
PAX2	20p-Amp	0.678	1
PAX2	Del_11q13.1	0.678	1
RAB42	20p-Amp	0.678	1
RAB42	Del_11q13.1	0.678	1
ZNF362	Del_11q13.1	0.678	1
FRMPD2	Amp_6p23	0.679	1
HRNR	Del_19p13.3	0.679	1
MYB	6q-Del	0.679	1
RB1	Amp_3q26.32	0.679	1
TGS1	6q-Del	0.679	1
4q-Del	Amp_14q21.1	0.679	1
APC	17q-Del	0.68	1
ARID1A	PIK3R1	0.68	1
FRMPD2	RUNX1	0.68	1
HRNR	Del_11q13.1	0.68	1
MAP3K1	TBX3	0.68	1
MYH9	14q-Del	0.68	1
MYH9	17q-Del	0.68	1
MYH9	Amp_19q12	0.68	1
RBMX	RUNX1	0.68	1
SF3B1	14q-Del	0.68	1
SMAD2	Amp_1q44	0.68	1
TAF1L	15q-Del	0.68	1
TAF1L	9q-Del	0.68	1
TFE3	Amp_1q44	0.68	1
7q-Amp	6q-Del	0.68	1
C17orf95	4q-Del	0.681	1
CDC42EP1	MAP3K1	0.681	1
CDC42EP1	4q-Del	0.681	1
FGFR2	Amp_1p22.3	0.681	1
GPRIN2	Amp_1p22.3	0.681	1
MLL3	Amp_1q21.3	0.681	1
NBPF9	4q-Del	0.681	1
PTPN22	Del_15q13.1	0.681	1
TPP2	7p-Amp	0.681	1
USP36	7p-Amp	0.681	1
VCPIP1	Del_9p23	0.681	1
ZFP36L1	7p-Amp	0.681	1
6q-Del	Amp_12q15	0.681	1
9q-Del	Amp_19q12	0.681	1
Amp_8p11.21	Del_9q34.2	0.681	1
ACTL6B	16p-Del	0.682	1
CBFB	Del_12q23.1	0.682	1
CDKN1B	16p-Del	0.682	1
FRMPD2	Del_1p36.13	0.682	1
GPS2	16p-Del	0.682	1
ICOSLG	22q-Del	0.682	1
IL1RAP	Amp_10q22.3	0.682	1
MYB	SPEN	0.682	1
MYB	7q-Amp	0.682	1
RUFY1	22q-Del	0.682	1
SMAD2	Amp_14q21.1	0.682	1
SMAD4	1p-Del	0.682	1
TBL1XR1	Amp_10q22.3	0.682	1
TFE3	1p-Del	0.682	1
TFE3	Amp_14q21.1	0.682	1
TGS1	7q-Amp	0.682	1
ZFP36L2	1p-Del	0.682	1
ZFP36L2	Amp_14q21.1	0.682	1
5p-Amp	Del_12q23.1	0.682	1
5p-Amp	Del_12q24.31	0.682	1
7p-Amp	13q-Del	0.682	1
IRS4	Del_8p23.2	0.683	1
PIK3R1	Del_22q13.32	0.683	1
TFE3	Del_6q15	0.683	1
TGS1	13q-Del	0.683	1
1q-Amp	Amp_14q21.1	0.683	1
6q-Del	Amp_11q14.1	0.683	1
MLL3	RUNX1	0.684	1
PAX2	Del_5q21.3	0.684	1
RAB42	Del_5q21.3	0.684	1
ZBTB7C	Del_5q21.3	0.684	1
11q-Del	Amp_3p25.1	0.684	1
Amp_11q14.1	Del_12q24.31	0.684	1
ARID1A	Del_12p13.1	0.685	1
C17orf95	Amp_12p13.33	0.685	1
CDC42EP1	Amp_8p11.23	0.685	1
CDC42EP1	Amp_12p13.33	0.685	1
FGFR2	Amp_10p15.1	0.685	1
MUC6	11p-Del	0.685	1
NBPF9	Del_9q21.11	0.685	1
NCOR1	Del_12q23.1	0.685	1
PIK3R1	11p-Del	0.685	1
PIK3R1	Del_9q34.2	0.685	1
RB1	1q-Amp	0.685	1
RB1	Amp_1p22.3	0.685	1
Amp_10p15.1	Amp_17q12	0.685	1
APC	Del_7q36.1	0.686	1
CTCF	Del_7q36.1	0.686	1
MLL3	SF3B1	0.686	1
MYH9	Amp_12q15	0.686	1
NCDN	Del_11q23.3	0.686	1
RAB42	Del_11q23.3	0.686	1
SF3B1	Del_7q36.1	0.686	1
ZNF362	Del_11q23.3	0.686	1
4q-Del	Amp_17q12	0.686	1
HRNR	Amp_15q26.3	0.687	1
IRS4	Del_11q25	0.687	1
TPP2	Amp_3p25.1	0.687	1
USP36	Amp_3p25.1	0.687	1
USP36	Del_7p22.3	0.687	1
ZFP36L1	Del_7p22.3	0.687	1
22q-Del	Amp_19q12	0.687	1
6q-Del	Del_5q21.3	0.687	1
Amp_4q13.3	Del_9q21.11	0.687	1
FGFR2	MAP2K4	0.688	1
HRNR	PTEN	0.688	1
IL1RAP	17q-Amp	0.688	1
KCNN3	Amp_4q13.3	0.688	1
MAP3K1	Del_6p25.3	0.688	1
SMAD2	Del_12q23.1	0.688	1
SMAD2	Del_12q24.31	0.688	1
SMAD4	Del_12q23.1	0.688	1
SP3	Amp_17q23.1	0.688	1
TBL1XR1	17q-Amp	0.688	1
TBL1XR1	Amp_4q13.3	0.688	1
TCP11	Amp_17q23.1	0.688	1
ZFP36L2	Del_12q23.1	0.688	1
ZFP36L2	Del_12q24.31	0.688	1
20p-Amp	Amp_1p22.3	0.688	1
20p-Amp	Del_12q24.31	0.688	1
4q-Del	Amp_1p22.3	0.688	1
Amp_6p23	Del_18q23	0.688	1
ACTL6B	PTEN	0.689	1
C17orf95	14q-Del	0.689	1
C17orf95	17q-Del	0.689	1
C17orf95	Amp_19q12	0.689	1
C17orf95	Del_21q11.2	0.689	1
CBFB	CTCF	0.689	1
CBFB	SF3B1	0.689	1
CDC42EP1	14q-Del	0.689	1
GPS2	16p-Amp	0.689	1
NBPF9	Amp_19q12	0.689	1
NBPF9	Del_21q11.2	0.689	1
PTEN	PTPN22	0.689	1
PTEN	1q-Del	0.689	1
PTPN22	16p-Amp	0.689	1
16p-Amp	1q-Del	0.689	1
9q-Del	Amp_19q13.42	0.689	1
Amp_6p23	Del_12p13.1	0.689	1
Amp_10q22.3	Amp_12q15	0.689	1
Amp_10q22.3	Del_7q36.1	0.689	1
Amp_13q34	Del_6q27	0.689	1
HRNR	Del_17p12	0.69	1
IL1RAP	Amp_8q24.21	0.69	1
MLL3	17p-Del	0.69	1
PIK3R1	Amp_20q13.2	0.69	1
ZMYM3	22q-Del	0.69	1
20p-Amp	Del_4q35.1	0.69	1
20p-Amp	Del_6q27	0.69	1
7q-Amp	16p-Del	0.69	1
1p-Del	Amp_12p13.33	0.69	1
PAX2	Amp_6p23	0.691	1
RAB42	Amp_6p23	0.691	1
RUNX1	Del_10q23.31	0.691	1
ZBTB7C	Amp_6p23	0.691	1
ZFP36L2	Del_11q23.3	0.691	1
ZNF362	Amp_6p23	0.691	1
5q-Del	Del_6q15	0.691	1
HRNR	Del_14q24.1	0.692	1
Amp_1q44	Del_6q27	0.692	1
Amp_6p23	Del_11p15.5	0.692	1
Amp_6p23	Del_14q24.1	0.692	1
Amp_19q12	Del_17p12	0.692	1
ACTL6B	Amp_11q14.1	0.693	1
AQP12A	5q-Del	0.693	1
C17orf95	Del_7q36.1	0.693	1
CDC42EP1	Del_7q36.1	0.693	1
CDKN1B	20q-Amp	0.693	1
EYS	1p-Del	0.693	1
EYS	Amp_14q21.1	0.693	1
GPS2	Amp_11q14.1	0.693	1
KDM6A	Del_17q21.31	0.693	1
KRAS	5q-Del	0.693	1
NBPF9	Del_7q36.1	0.693	1
PTPN22	Amp_11q14.1	0.693	1
SP3	5q-Del	0.693	1
TCP11	5q-Del	0.693	1
1p-Del	Amp_13q34	0.693	1
1q-Del	Amp_11q14.1	0.693	1
APC	Del_19p13.3	0.694	1
EYS	Del_11q13.1	0.694	1
MYB	20p-Amp	0.694	1
MYB	Del_11q13.1	0.694	1
MYH9	Del_19p13.3	0.694	1
NCDN	16q-Del	0.694	1
RAB42	16q-Del	0.694	1
TAF1L	Del_4q35.1	0.694	1
TGS1	Del_6q15	0.694	1
ZBTB7C	16q-Del	0.694	1
Amp_1q44	Del_9q34.2	0.694	1
FBXW7	MAP3K1	0.695	1
FBXW7	4q-Del	0.695	1
KCNN3	NCOR1	0.695	1
KDM6A	4q-Del	0.695	1
NCOR1	TBL1XR1	0.695	1
NCOR1	4q-Del	0.695	1
PIK3CA	TCP11	0.695	1
TBX3	Amp_1p22.3	0.695	1
ZMYM3	4q-Del	0.695	1
Amp_3q26.32	Del_17p12	0.695	1
Del_7q36.1	Del_19p13.3	0.695	1
CTCF	Del_13q14.2	0.696	1
ERBB2	Amp_11p13	0.696	1
HRNR	IRS4	0.696	1
HRNR	NLGN3	0.696	1
MAP2K4	Del_11q25	0.696	1
TAF1L	13q-Del	0.696	1
TBX3	17q-Del	0.696	1
TBX3	Amp_19q12	0.696	1
5p-Amp	9p-Del	0.696	1
17q-Del	Amp_4q13.3	0.696	1
Amp_4q13.3	Amp_19q12	0.696	1
Amp_4q13.3	Del_21q11.2	0.696	1
KRAS	Amp_11p13	0.697	1
MUC6	8p-Del	0.697	1
NF1	Amp_1q44	0.697	1
RB1	11q-Del	0.697	1
RUFY1	Amp_11p13	0.697	1
SMAD2	Amp_1q21.3	0.697	1
SP3	Amp_11p13	0.697	1
TCP11	Amp_11p13	0.697	1
Amp_8p11.21	Del_7q36.1	0.697	1
RBMX	Del_3p21.31	0.698	1
ZFP36L2	Del_6q27	0.698	1
7q-Amp	Amp_11q13.3	0.698	1
7q-Amp	Del_1p36.13	0.698	1
Amp_1p22.3	Del_7p22.3	0.698	1
Amp_15q26.3	Del_7p22.3	0.698	1
FGFR2	Del_10q26.3	0.699	1
GPRIN2	9p-Del	0.699	1
GPRIN2	Del_10q26.3	0.699	1
IRS4	Del_10q26.3	0.699	1
NLGN3	9p-Del	0.699	1
ZFP36L1	Amp_19p13.12	0.699	1
20p-Amp	17q-Del	0.699	1
17q-Del	Del_11q13.1	0.699	1
Del_11q13.1	Del_21q11.2	0.699	1
IL1RAP	Del_19p13.3	0.7	1
KCNN3	Del_19p13.3	0.7	1
MYB	RUNX1	0.7	1
NF1	17q-Amp	0.7	1
NF1	Amp_4q13.3	0.7	1
SPEN	16q-Del	0.7	1
TBL1XR1	Del_19p13.3	0.7	1
TBX3	17q-Amp	0.7	1
TBX3	Amp_4q13.3	0.7	1
ACTL6B	CDH1	0.701	1
CDH1	CDKN1B	0.701	1
IL1RAP	Amp_1q44	0.701	1
IL1RAP	Amp_11q13.3	0.701	1
KCNN3	Amp_1q44	0.701	1
KDM6A	Amp_12p13.33	0.701	1
KDM6A	Del_9q21.11	0.701	1
NF1	Amp_10p15.1	0.701	1
SMAD2	16q-Del	0.701	1
SMAD4	16q-Del	0.701	1
ZMYM3	Amp_12p13.33	0.701	1
8p-Amp	Del_11q23.3	0.701	1
AQP12A	5p-Amp	0.702	1
AQP12A	Amp_6q21	0.702	1
AQP12A	Amp_19q13.42	0.702	1
EYS	Del_12q23.1	0.702	1
FBXW7	Del_16q24.3	0.702	1
ICOSLG	5p-Amp	0.702	1
ICOSLG	Amp_6q21	0.702	1
ICOSLG	Amp_19q13.42	0.702	1
KRAS	5p-Amp	0.702	1
KRAS	Amp_6q21	0.702	1
KRAS	Amp_19q13.42	0.702	1
RUFY1	5p-Amp	0.702	1
RUFY1	Amp_6q21	0.702	1
RUFY1	Amp_19q13.42	0.702	1
SP3	5p-Amp	0.702	1
SP3	Amp_6q21	0.702	1
SPEN	20p-Amp	0.702	1
TCP11	Amp_6q21	0.702	1
TCP11	Amp_19q13.42	0.702	1
Amp_1p22.3	Del_11p15.5	0.702	1
Amp_8p11.23	Amp_12p13.33	0.702	1
APC	Del_11p15.5	0.703	1
FGFR2	GATA3	0.703	1
FGFR2	4p-Del	0.703	1
GATA3	GPRIN2	0.703	1
GATA3	IRS4	0.703	1
GATA3	Del_19q13.32	0.703	1
MAP3K1	Del_8p23.2	0.703	1
SF3B1	Del_14q24.1	0.703	1
20q-Amp	Amp_10p15.1	0.703	1
11p-Del	Amp_11p13	0.703	1
Amp_10p15.1	Amp_11q14.1	0.703	1
Amp_12q15	Del_1p22.1	0.703	1
ERBB2	Amp_6q21	0.704	1
MYB	Del_5q21.3	0.704	1
NF1	Amp_12q15	0.704	1
RB1	Amp_6q21	0.704	1
TBX3	Amp_12q15	0.704	1
TGS1	Del_5q21.3	0.704	1
8p-Amp	9q-Del	0.704	1
8p-Amp	Del_1p22.1	0.704	1
Amp_1p22.3	Amp_12p13.33	0.704	1
APC	Del_8p23.2	0.705	1
C17orf95	15q-Del	0.705	1
C17orf95	Del_20p13	0.705	1
CBFB	FBXW7	0.705	1
CBFB	KDM6A	0.705	1
CBFB	ZMYM3	0.705	1
CDC42EP1	9q-Del	0.705	1
CDC42EP1	Del_20p13	0.705	1
CDKN1B	Del_4p16.3	0.705	1
GATA3	RUNX1	0.705	1
GPRIN2	SPEN	0.705	1
GPRIN2	7q-Amp	0.705	1
NBPF9	9q-Del	0.705	1
NBPF9	Del_20p13	0.705	1
NLGN3	7q-Amp	0.705	1
SF3B1	15q-Del	0.705	1
SF3B1	Del_20p13	0.705	1
SPEN	Amp_15q26.3	0.705	1
GATA3	Amp_19q13.42	0.706	1
MLL3	17q-Amp	0.706	1
PTEN	Amp_1p22.3	0.706	1
4p-Del	Amp_19q13.42	0.706	1
CDH1	6q-Del	0.707	1
FBXW7	14q-Del	0.707	1
FBXW7	Amp_19q12	0.707	1
IL1RAP	Del_14q24.1	0.707	1
KDM6A	Amp_19q12	0.707	1
TBL1XR1	Del_14q24.1	0.707	1
VCPIP1	Del_11p15.5	0.707	1
VCPIP1	Del_14q24.1	0.707	1
ZMYM3	Amp_19q12	0.707	1
ARID1A	Del_9q21.11	0.708	1
FGFR2	18p-Del	0.708	1
GPRIN2	8p-Amp	0.708	1
IRS4	8p-Amp	0.708	1
NLGN3	18p-Del	0.708	1
RUNX1	9q-Del	0.708	1
17q-Amp	Amp_1q21.3	0.708	1
Amp_11q13.3	Amp_19q12	0.708	1
CDC42EP1	Amp_11q13.3	0.709	1
GPS2	Del_1p22.1	0.709	1
KCNN3	16p-Del	0.709	1
MYB	NF1	0.709	1
NBPF9	Amp_11q13.3	0.709	1
SMAD2	Del_1p36.13	0.709	1
SMAD2	Del_19q13.32	0.709	1
SMAD4	Del_1p36.13	0.709	1
SMAD4	Del_19q13.32	0.709	1
TAF1L	20q-Amp	0.709	1
TBL1XR1	16p-Del	0.709	1
TFE3	Del_1p36.13	0.709	1
VCPIP1	16p-Del	0.709	1
8q-Amp	17p-Del	0.709	1
18q-Del	Amp_11p13	0.709	1
Amp_19q13.42	Del_9p21.3	0.709	1
HRNR	Amp_8p11.21	0.71	1
MAP3K1	Amp_15q26.3	0.71	1
PAX2	Del_2q37.3	0.71	1
RAB42	Del_2q37.3	0.71	1
TP53	ZMYM3	0.71	1
ZBTB7C	Del_2q37.3	0.71	1
ZNF362	Del_2q37.3	0.71	1
8q-Amp	Amp_15q26.3	0.71	1
Amp_1q44	Del_14q24.1	0.71	1
AQP12A	Amp_13q34	0.711	1
CASZ1	Del_2q37.3	0.711	1
CDKN1B	22q-Del	0.711	1
FOXA1	MED23	0.711	1
GPS2	22q-Del	0.711	1
ICOSLG	Amp_13q34	0.711	1
KRAS	Amp_13q34	0.711	1
PTPN22	22q-Del	0.711	1
RUFY1	Amp_13q34	0.711	1
RUNX1	18p-Del	0.711	1
SP3	Amp_13q34	0.711	1
TCP11	Amp_13q34	0.711	1
USP36	Amp_10q22.3	0.711	1
ZFP36L1	Amp_10q22.3	0.711	1
Amp_4q13.3	Del_6q15	0.711	1
ACTL6B	MAP2K4	0.712	1
CDKN1B	16q-Del	0.712	1
MLL3	Amp_14q21.1	0.712	1
MLL3	Amp_20q13.2	0.712	1
PIK3CA	22q-Del	0.712	1
PTPN22	16q-Del	0.712	1
20p-Amp	11p-Del	0.712	1
17p-Del	Amp_4q13.3	0.712	1
1p-Del	Amp_12q15	0.712	1
5q-Del	Amp_8p11.23	0.712	1
Amp_10p15.1	Amp_17q23.1	0.712	1
FBXW7	Amp_12q15	0.713	1
FBXW7	Del_7q36.1	0.713	1
GATA3	RB1	0.713	1
MAP3K1	Del_12p13.1	0.713	1
MLL3	ZMYM3	0.713	1
MYB	Amp_6p23	0.713	1
MYB	Del_6q27	0.713	1
NCDN	11p-Del	0.713	1
NCOR1	Amp_19q12	0.713	1
PAX2	11p-Del	0.713	1
PIK3R1	Del_12p13.1	0.713	1
RAB42	11p-Del	0.713	1
RAB42	Del_9q34.2	0.713	1
ZBTB7C	11p-Del	0.713	1
ZBTB7C	Del_9q34.2	0.713	1
ZMYM3	Del_7q36.1	0.713	1
ZNF362	11p-Del	0.713	1
ZNF362	Del_9q34.2	0.713	1
16p-Amp	Amp_10q22.3	0.713	1
FBXW7	8q-Amp	0.714	1
KDM6A	8q-Amp	0.714	1
MUC6	Del_11q25	0.714	1
PIK3R1	Del_11q25	0.714	1
20q-Amp	Del_14q24.1	0.714	1
7p-Amp	Amp_10q22.3	0.714	1
SMAD2	7p-Amp	0.715	1
TFE3	7p-Amp	0.715	1
ZFP36L2	7p-Amp	0.715	1
5p-Amp	Del_4q35.1	0.715	1
5p-Amp	Del_18q23	0.715	1
7p-Amp	Del_14q24.1	0.715	1
8p-Amp	Amp_6q21	0.715	1
18p-Del	Amp_19q13.42	0.715	1
Amp_19q13.42	Del_18q23	0.715	1
ARID1A	14q-Del	0.716	1
ARID1A	17q-Del	0.716	1
ARID1A	Amp_4q13.3	0.716	1
CASZ1	11p-Del	0.716	1
CASZ1	Del_9q34.2	0.716	1
FGFR2	6q-Del	0.716	1
FGFR2	Amp_17q12	0.716	1
IRS4	6q-Del	0.716	1
IRS4	Amp_17q12	0.716	1
KCNN3	PTEN	0.716	1
NLGN3	6q-Del	0.716	1
RBMX	11p-Del	0.716	1
RBMX	Del_9q34.2	0.716	1
SF3B1	Amp_17q12	0.716	1
17q-Amp	Del_19q13.32	0.716	1
1q-Amp	Del_12q24.31	0.716	1
Amp_19q12	Del_12q23.1	0.716	1
Del_6p25.3	Del_19q13.32	0.716	1
Del_12q24.31	Del_21q11.2	0.716	1
ACTL6B	Amp_17q23.1	0.717	1
FOXA1	Amp_3p25.1	0.717	1
GPS2	Amp_3q26.32	0.717	1
PTPN22	Amp_3q26.32	0.717	1
20p-Amp	Amp_1q44	0.717	1
7q-Amp	Del_5q21.3	0.717	1
Amp_19q12	Del_18q23	0.717	1
APC	Amp_8p11.23	0.718	1
NF1	17p-Del	0.718	1
PTEN	Amp_14q21.1	0.718	1
RUNX1	16p-Del	0.718	1
SF3B1	Amp_8p11.23	0.718	1
TBX3	17p-Del	0.718	1
USP36	Del_18q23	0.718	1
ZFP36L1	17q-Amp	0.718	1
5p-Amp	Del_9q34.2	0.718	1
11p-Del	Amp_6q21	0.718	1
1p-Del	Amp_14q21.1	0.718	1
Amp_1q44	Del_6p25.3	0.718	1
Amp_13q34	Del_11q25	0.718	1
ARID1A	Amp_1p22.3	0.719	1
ERBB2	22q-Del	0.719	1
IL1RAP	Amp_1q21.3	0.719	1
RB1	8p-Amp	0.719	1
TBL1XR1	Amp_1q21.3	0.719	1
17q-Amp	Del_4q35.1	0.719	1
Del_6q15	Del_12q23.1	0.719	1
ACTL6B	HRNR	0.72	1
CDKN1B	HRNR	0.72	1
FGFR2	Amp_1q44	0.72	1
GPS2	HRNR	0.72	1
HRNR	PTPN22	0.72	1
SMAD2	Amp_3p25.1	0.72	1
SMAD4	Amp_3p25.1	0.72	1
SMAD4	Del_7p22.3	0.72	1
TFE3	Amp_3p25.1	0.72	1
TFE3	Del_7p22.3	0.72	1
ZFP36L2	Amp_3p25.1	0.72	1
ZFP36L2	Del_7p22.3	0.72	1
Amp_11q13.3	Del_4p16.3	0.72	1
Amp_13q34	Del_10q23.31	0.72	1
ACTL6B	Amp_1p22.3	0.721	1
AQP12A	1p-Del	0.721	1
ICOSLG	Amp_14q21.1	0.721	1
IL1RAP	TP53	0.721	1
KRAS	1p-Del	0.721	1
KRAS	Amp_14q21.1	0.721	1
MLL3	Del_17p12	0.721	1
RUFY1	Amp_14q21.1	0.721	1
SMAD4	Del_3p21.31	0.721	1
SP3	1p-Del	0.721	1
SP3	Amp_14q21.1	0.721	1
TCP11	1p-Del	0.721	1
TFE3	Del_9p21.3	0.721	1
TPP2	Del_17q21.31	0.721	1
ZFP36L1	Del_17q21.31	0.721	1
ZFP36L2	Del_9p21.3	0.721	1
Amp_8p11.21	Del_4p16.3	0.721	1
CBFB	MED23	0.722	1
CBFB	PIK3R1	0.722	1
FGFR2	RUNX1	0.722	1
FOXA1	17p-Del	0.722	1
GPRIN2	RUNX1	0.722	1
IRS4	RUNX1	0.722	1
NCDN	Del_11q25	0.722	1
PTEN	Del_1p36.13	0.722	1
RAB42	Del_11q25	0.722	1
ZNF362	Del_11q25	0.722	1
7p-Amp	8p-Del	0.722	1
CBFB	Del_6q15	0.723	1
FBXW7	Del_17p12	0.723	1
PTEN	Del_13q14.2	0.723	1
RAB42	Del_6p25.3	0.723	1
ZBTB7C	Del_6p25.3	0.723	1
ZNF362	Del_6p25.3	0.723	1
Amp_8q24.21	Del_22q13.32	0.723	1
ARID1A	Amp_12q15	0.724	1
HRNR	5q-Del	0.724	1
MAP3K1	PIK3R1	0.724	1
MYH9	Del_11q23.3	0.724	1
NCOR1	USP36	0.724	1
NCOR1	ZFP36L1	0.724	1
SMAD4	11q-Del	0.724	1
1q-Amp	Amp_17q12	0.724	1
Amp_3p25.1	Amp_8p11.21	0.724	1
Amp_8p11.23	Amp_10q22.3	0.724	1
ACTL6B	Amp_10p15.1	0.725	1
CDKN1B	Amp_10p15.1	0.725	1
CTCF	ERBB2	0.725	1
CTCF	RB1	0.725	1
ERBB2	MYH9	0.725	1
ERBB2	SF3B1	0.725	1
HRNR	Del_4q35.1	0.725	1
HRNR	Del_15q13.1	0.725	1
MYH9	RB1	0.725	1
RB1	SF3B1	0.725	1
RBMX	16q-Del	0.725	1
RUNX1	6q-Del	0.725	1
TAF1L	Del_4p16.3	0.725	1
VCPIP1	Del_4q35.1	0.725	1
14q-Del	Amp_8p11.23	0.725	1
18q-Del	Amp_19q13.42	0.725	1
6q-Del	Del_20p13	0.725	1
AQP12A	Del_12q24.31	0.726	1
KRAS	Del_12q23.1	0.726	1
KRAS	Del_12q24.31	0.726	1
MAP2K4	Amp_19q13.42	0.726	1
RUFY1	Del_12q23.1	0.726	1
SP3	Del_12q23.1	0.726	1
SP3	Del_12q24.31	0.726	1
SPEN	11q-Del	0.726	1
TCP11	Del_12q23.1	0.726	1
Amp_6p23	Del_12q23.1	0.726	1
Amp_6p23	Del_12q24.31	0.726	1
Amp_10q22.3	Del_7p22.3	0.726	1
Amp_19q12	Del_17q21.31	0.726	1
CTCF	Del_15q13.1	0.727	1
IL1RAP	Amp_8p11.21	0.727	1
KCNN3	Amp_8p11.21	0.727	1
MLL3	Del_6p25.3	0.727	1
VCPIP1	Amp_8p11.21	0.727	1
Amp_15q26.3	Del_6q15	0.727	1
ACTL6B	SPEN	0.728	1
AQP12A	Amp_17q12	0.728	1
C17orf95	Del_22q13.32	0.728	1
CDKN1B	7q-Amp	0.728	1
HRNR	Amp_1q44	0.728	1
ICOSLG	Amp_17q12	0.728	1
PTPN22	7q-Amp	0.728	1
7q-Amp	1q-Del	0.728	1
8p-Amp	Amp_3q26.32	0.728	1
Amp_3p25.1	Amp_8p11.23	0.728	1
Amp_4q13.3	Del_5q21.3	0.728	1
FOXA1	FRMPD2	0.729	1
PAX2	Del_12p13.1	0.729	1
PIK3R1	Del_9q21.11	0.729	1
PTEN	RUNX1	0.729	1
PTEN	Del_12q24.31	0.729	1
RAB42	Del_12p13.1	0.729	1
ZBTB7C	Del_12p13.1	0.729	1
ZNF362	Del_12p13.1	0.729	1
17q-Del	Amp_10p15.1	0.729	1
Amp_10p15.1	Del_21q11.2	0.729	1
ARID1A	Del_22q13.32	0.73	1
EYS	Del_9p23	0.73	1
GPRIN2	NF1	0.73	1
GPRIN2	PIK3CA	0.73	1
GPRIN2	Del_11q13.1	0.73	1
IRS4	PIK3CA	0.73	1
IRS4	TBX3	0.73	1
IRS4	Del_11q13.1	0.73	1
NF1	Del_17p12	0.73	1
NLGN3	TBX3	0.73	1
NLGN3	20p-Amp	0.73	1
NLGN3	Del_11q13.1	0.73	1
VCPIP1	Del_17p12	0.73	1
7p-Amp	18p-Del	0.73	1
9p-Del	Amp_13q34	0.73	1
Amp_1q44	Del_9q21.11	0.73	1
CTCF	Amp_15q26.3	0.731	1
KDM6A	15q-Del	0.731	1
MYH9	Amp_15q26.3	0.731	1
SMAD2	Amp_19p13.12	0.731	1
SMAD4	Amp_19p13.12	0.731	1
TPP2	Del_9p23	0.731	1
ZFP36L1	Del_9p23	0.731	1
ZFP36L2	Amp_19p13.12	0.731	1
7q-Amp	Amp_6p23	0.731	1
Amp_1q21.3	Amp_8q24.21	0.731	1
Amp_19q13.42	Del_17p12	0.731	1
C17orf95	Amp_20q13.2	0.732	1
CDC42EP1	Amp_20q13.2	0.732	1
NBPF9	Amp_20q13.2	0.732	1
16p-Amp	Amp_6q21	0.732	1
ACTL6B	Del_10q23.31	0.733	1
CDKN1B	Del_10q23.31	0.733	1
EYS	MED23	0.733	1
GPS2	Del_10q23.31	0.733	1
PTPN22	Del_10q23.31	0.733	1
TBL1XR1	16p-Amp	0.733	1
VCPIP1	16p-Amp	0.733	1
4p-Del	Amp_20q13.2	0.733	1
8p-Del	Amp_10q22.3	0.733	1
Amp_8p11.21	Del_9p23	0.733	1
Amp_15q26.3	Amp_19q12	0.733	1
Amp_19q13.42	Del_6q15	0.733	1
CDC42EP1	Del_16q24.3	0.734	1
NF1	18p-Del	0.734	1
TAF1L	5q-Del	0.734	1
8p-Amp	Del_15q13.1	0.734	1
Amp_8p11.23	Del_11p15.5	0.734	1
MED23	17q-Del	0.735	1
MED23	Del_21q11.2	0.735	1
MUC6	17q-Del	0.735	1
PIK3R1	Amp_19q12	0.735	1
PIK3R1	Del_21q11.2	0.735	1
Amp_6q21	Del_19q13.32	0.735	1
CTCF	13q-Del	0.736	1
FOXA1	Del_6p25.3	0.736	1
GPRIN2	8q-Amp	0.736	1
IL1RAP	Amp_11q14.1	0.736	1
IRS4	8q-Amp	0.736	1
KCNN3	Amp_11q14.1	0.736	1
MAP3K1	RAB42	0.736	1
MAP3K1	ZBTB7C	0.736	1
MAP3K1	ZNF362	0.736	1
RAB42	4q-Del	0.736	1
USP36	16p-Del	0.736	1
VCPIP1	Amp_11q14.1	0.736	1
ZBTB7C	4q-Del	0.736	1
ZFP36L1	16p-Del	0.736	1
Amp_17q12	Del_10q26.3	0.736	1
C17orf95	5q-Del	0.737	1
CDC42EP1	5q-Del	0.737	1
ICOSLG	TP53	0.737	1
KCNN3	MAP2K4	0.737	1
MAP2K4	TBL1XR1	0.737	1
MAP2K4	VCPIP1	0.737	1
NCOR1	Del_11q25	0.737	1
NF1	Del_6q15	0.737	1
RUFY1	TP53	0.737	1
SMAD4	Del_11q25	0.737	1
TAF1L	Del_11q25	0.737	1
TCP11	TP53	0.737	1
ZFP36L2	Del_11q25	0.737	1
ZMYM3	Amp_8q24.21	0.737	1
ACTL6B	9p-Del	0.738	1
GPS2	9p-Del	0.738	1
GPS2	Del_10q26.3	0.738	1
KDM6A	Del_11p15.5	0.738	1
VCPIP1	8p-Del	0.738	1
17q-Amp	Amp_3p25.1	0.738	1
7p-Amp	18q-Del	0.738	1
8q-Amp	Del_1p22.1	0.738	1
ARID1A	FGFR2	0.739	1
ARID1A	GPRIN2	0.739	1
CBFB	FRMPD2	0.739	1
FGFR2	Del_5q21.3	0.739	1
GPRIN2	Amp_1q21.3	0.739	1
IRS4	Del_5q21.3	0.739	1
NCDN	Del_9q21.11	0.739	1
NLGN3	Del_5q21.3	0.739	1
RAB42	Amp_12p13.33	0.739	1
RAB42	Del_9q21.11	0.739	1
ZBTB7C	Amp_12p13.33	0.739	1
ZBTB7C	Del_9q21.11	0.739	1
ZNF362	Del_9q21.11	0.739	1
Amp_1q21.3	Del_12q24.31	0.739	1
Amp_10q22.3	Del_18q23	0.739	1
KDM6A	RB1	0.74	1
KDM6A	17p-Del	0.74	1
NCOR1	Del_4q35.1	0.74	1
NCOR1	Del_15q13.1	0.74	1
TAF1L	Amp_11p13	0.74	1
7q-Amp	5q-Del	0.74	1
16p-Del	Amp_1q21.3	0.74	1
18p-Del	Amp_1p22.3	0.74	1
5q-Del	Amp_3p25.1	0.74	1
Amp_20q13.2	Del_5q11.2	0.74	1
AQP12A	13q-Del	0.741	1
C17orf95	Amp_11p13	0.741	1
ERBB2	Del_12q23.1	0.741	1
ERBB2	Del_12q24.31	0.741	1
FRMPD2	Amp_20q13.2	0.741	1
MED23	MLL3	0.741	1
NBPF9	Amp_11p13	0.741	1
RB1	Del_12q24.31	0.741	1
SF3B1	20q-Amp	0.741	1
SP3	13q-Del	0.741	1
17q-Amp	16q-Del	0.741	1
16p-Del	Amp_17q12	0.741	1
ACTL6B	GATA3	0.742	1
CASZ1	Del_12p13.1	0.742	1
CDKN1B	GATA3	0.742	1
CDKN1B	4p-Del	0.742	1
GATA3	GPS2	0.742	1
GATA3	PTEN	0.742	1
GATA3	PTPN22	0.742	1
GATA3	1q-Del	0.742	1
HRNR	5p-Amp	0.742	1
IRS4	Del_6q15	0.742	1
NCDN	14q-Del	0.742	1
NCDN	17q-Del	0.742	1
NCDN	Amp_19q12	0.742	1
NCDN	Del_21q11.2	0.742	1
PAX2	14q-Del	0.742	1
PAX2	17q-Del	0.742	1
PTEN	4p-Del	0.742	1
RAB42	14q-Del	0.742	1
RAB42	17q-Del	0.742	1
RAB42	Del_21q11.2	0.742	1
SMAD2	Amp_10q22.3	0.742	1
SMAD4	Amp_10q22.3	0.742	1
TBL1XR1	1q-Amp	0.742	1
TFE3	Amp_10q22.3	0.742	1
TGS1	Del_9p21.3	0.742	1
ZBTB7C	14q-Del	0.742	1
ZBTB7C	17q-Del	0.742	1
ZBTB7C	Amp_19q12	0.742	1
ZBTB7C	Del_21q11.2	0.742	1
ZNF362	14q-Del	0.742	1
ZNF362	17q-Del	0.742	1
11q-Del	Amp_6p23	0.742	1
ACTL6B	RUNX1	0.743	1
EYS	7p-Amp	0.743	1
FOXA1	22q-Del	0.743	1
GPS2	RUNX1	0.743	1
MUC6	Amp_17q23.1	0.743	1
PIK3R1	Amp_17q23.1	0.743	1
PTEN	TBX3	0.743	1
PTEN	USP36	0.743	1
PTEN	ZFP36L1	0.743	1
RUNX1	1q-Del	0.743	1
1p-Del	Del_20p13	0.743	1
9q-Del	Amp_14q21.1	0.743	1
Amp_4q13.3	Del_17p12	0.743	1
Amp_10p15.1	Del_7q36.1	0.743	1
CDH1	TBL1XR1	0.744	1
CDH1	VCPIP1	0.744	1
HRNR	KCNN3	0.744	1
HRNR	TBL1XR1	0.744	1
HRNR	VCPIP1	0.744	1
TAF1L	Amp_8p11.21	0.744	1
Amp_14q21.1	Del_11p15.5	0.744	1
Amp_17q12	Del_2q37.3	0.744	1
AQP12A	Del_17p12	0.745	1
AQP12A	Del_19q13.32	0.745	1
C17orf95	5p-Amp	0.745	1
C17orf95	Amp_6q21	0.745	1
C17orf95	Amp_19q13.42	0.745	1
CDC42EP1	5p-Amp	0.745	1
CDC42EP1	Amp_6q21	0.745	1
HRNR	Amp_11q14.1	0.745	1
ICOSLG	Del_17p12	0.745	1
ICOSLG	Del_19q13.32	0.745	1
KRAS	Del_17p12	0.745	1
KRAS	Del_19q13.32	0.745	1
MAP3K1	20q-Amp	0.745	1
NBPF9	5p-Amp	0.745	1
NBPF9	Amp_6q21	0.745	1
NBPF9	Amp_19q13.42	0.745	1
RUFY1	Del_19q13.32	0.745	1
RUNX1	Del_11q13.1	0.745	1
SP3	Del_19q13.32	0.745	1
TCP11	Del_19q13.32	0.745	1
20q-Amp	4q-Del	0.745	1
Amp_1p22.3	Del_12q23.1	0.745	1
Amp_17q23.1	Del_5q21.3	0.745	1
ACTL6B	8p-Amp	0.746	1
ARID1A	9q-Del	0.746	1
CDKN1B	8p-Amp	0.746	1
CDKN1B	18p-Del	0.746	1
GPS2	18p-Del	0.746	1
MAP3K1	PTEN	0.746	1
MAP3K1	Amp_8q24.21	0.746	1
MLL3	NCDN	0.746	1
MLL3	PAX2	0.746	1
MLL3	RAB42	0.746	1
MLL3	ZBTB7C	0.746	1
NCDN	Amp_12q15	0.746	1
PAX2	Amp_12q15	0.746	1
PTEN	Del_11q23.3	0.746	1
ZBTB7C	Amp_12q15	0.746	1
ZBTB7C	Del_7q36.1	0.746	1
ZNF362	Del_7q36.1	0.746	1
8p-Amp	17p-Del	0.746	1
4q-Del	Amp_8q24.21	0.746	1
Del_4p16.3	Del_16q24.3	0.746	1
ARID1A	16p-Del	0.747	1
ERBB2	Del_11q13.1	0.747	1
FGFR2	Amp_6p23	0.747	1
GATA3	20p-Amp	0.747	1
GATA3	Del_11q13.1	0.747	1
IL1RAP	Del_4p16.3	0.747	1
KCNN3	Del_4p16.3	0.747	1
MYB	11p-Del	0.747	1
MYB	Del_9q34.2	0.747	1
RBMX	8p-Del	0.747	1
TAF1L	5p-Amp	0.747	1
TAF1L	Amp_6q21	0.747	1
TBL1XR1	Del_4p16.3	0.747	1
TGS1	Del_9q34.2	0.747	1
TP53	8p-Del	0.747	1
1q-Amp	15q-Del	0.747	1
8p-Amp	Del_7p22.3	0.747	1
AQP12A	Del_6q15	0.748	1
CTCF	Del_6q15	0.748	1
ICOSLG	Del_6q15	0.748	1
SMAD2	17q-Amp	0.748	1
SMAD2	Amp_4q13.3	0.748	1
SP3	Del_6q15	0.748	1
TFE3	Amp_4q13.3	0.748	1
USP36	Del_19p13.3	0.748	1
ZFP36L1	Del_19p13.3	0.748	1
ZFP36L2	Amp_4q13.3	0.748	1
1q-Amp	18p-Del	0.748	1
5p-Amp	Del_6p25.3	0.748	1
5p-Amp	Del_9p23	0.748	1
7q-Amp	Del_4q35.1	0.748	1
7q-Amp	Del_15q13.1	0.748	1
Amp_19q13.42	Del_6p25.3	0.748	1
HRNR	SPEN	0.749	1
MAP2K4	Del_6q15	0.749	1
CDKN1B	18q-Del	0.75	1
CTCF	TAF1L	0.75	1
FOXA1	Del_12p13.1	0.75	1
GPS2	18q-Del	0.75	1
KRAS	7p-Amp	0.75	1
NF1	Del_9p23	0.75	1
RUFY1	7p-Amp	0.75	1
SF3B1	TAF1L	0.75	1
SP3	7p-Amp	0.75	1
TAF1L	Amp_10p15.1	0.75	1
TCP11	7p-Amp	0.75	1
Amp_1p22.3	Del_6q15	0.75	1
ACTL6B	NF1	0.751	1
ARID1A	GATA3	0.751	1
CDH1	SF3B1	0.751	1
CDKN1B	NF1	0.751	1
EYS	Amp_3p25.1	0.751	1
GPS2	NF1	0.751	1
GPS2	TBX3	0.751	1
IL1RAP	7q-Amp	0.751	1
IL1RAP	Del_1p22.1	0.751	1
KCNN3	SPEN	0.751	1
KCNN3	7q-Amp	0.751	1
NCOR1	Amp_3p25.1	0.751	1
PTPN22	TBX3	0.751	1
TBL1XR1	7q-Amp	0.751	1
TBX3	1q-Del	0.751	1
VCPIP1	7q-Amp	0.751	1
VCPIP1	Del_1p22.1	0.751	1
CASZ1	MAP3K1	0.752	1
MAP3K1	RBMX	0.752	1
MAP3K1	18p-Del	0.752	1
PAX2	8q-Amp	0.752	1
RAB42	8q-Amp	0.752	1
16q-Del	Amp_11q14.1	0.752	1
4p-Del	Amp_17q12	0.752	1
Amp_1q44	Amp_14q21.1	0.752	1
C17orf95	Amp_13q34	0.753	1
FOXA1	20q-Amp	0.753	1
FOXA1	Amp_10q22.3	0.753	1
1q-Amp	Amp_12q15	0.753	1
6q-Del	Amp_1q21.3	0.753	1
ACTL6B	6q-Del	0.754	1
GPS2	6q-Del	0.754	1
GPS2	Del_11q25	0.754	1
ICOSLG	1q-Amp	0.754	1
NCOR1	ZFP36L2	0.754	1
PTEN	Amp_12p13.33	0.754	1
PTEN	Del_9q21.11	0.754	1
SPEN	1q-Amp	0.754	1
TCP11	1q-Amp	0.754	1
TPP2	Del_11p15.5	0.754	1
1q-Del	6q-Del	0.754	1
Amp_4q13.3	Amp_8p11.23	0.754	1
AQP12A	Amp_3p25.1	0.755	1
AQP12A	Del_7p22.3	0.755	1
ERBB2	MUC6	0.755	1
HRNR	Del_2q37.3	0.755	1
ICOSLG	Amp_3p25.1	0.755	1
KRAS	Amp_3p25.1	0.755	1
KRAS	Del_7p22.3	0.755	1
MED23	RB1	0.755	1
MUC6	RB1	0.755	1
RUFY1	Amp_3p25.1	0.755	1
SF3B1	Del_5q11.2	0.755	1
TCP11	Del_7p22.3	0.755	1
TP53	18p-Del	0.755	1
ZMYM3	Amp_15q26.3	0.755	1
20p-Amp	15q-Del	0.755	1
Del_11q13.1	Del_19q13.32	0.755	1
APC	Amp_11q13.3	0.756	1
CTCF	5q-Del	0.756	1
CTCF	Amp_11q13.3	0.756	1
FRMPD2	Amp_1q21.3	0.756	1
NCDN	15q-Del	0.756	1
NCDN	9q-Del	0.756	1
NCDN	Del_20p13	0.756	1
PAX2	15q-Del	0.756	1
RAB42	15q-Del	0.756	1
RAB42	9q-Del	0.756	1
RAB42	Del_20p13	0.756	1
ZBTB7C	15q-Del	0.756	1
ZBTB7C	9q-Del	0.756	1
ZNF362	15q-Del	0.756	1
ZNF362	9q-Del	0.756	1
18q-Del	Amp_13q34	0.756	1
Amp_6p23	Amp_12q15	0.756	1
Amp_8p11.21	Del_2q37.3	0.756	1
CASZ1	Amp_12p13.33	0.757	1
CASZ1	Del_9q21.11	0.757	1
CBFB	MYB	0.757	1
FRMPD2	Amp_12p13.33	0.757	1
GATA3	Del_2q37.3	0.757	1
MED23	Del_20p13	0.757	1
MUC6	15q-Del	0.757	1
PIK3CA	ZFP36L1	0.757	1
PIK3R1	15q-Del	0.757	1
RBMX	Del_9q21.11	0.757	1
TGS1	Amp_11q13.3	0.757	1
9q-Del	Del_12q24.31	0.757	1
Del_5q11.2	Del_11q13.1	0.757	1
IL1RAP	Amp_3q26.32	0.758	1
IRS4	17p-Del	0.758	1
NLGN3	17p-Del	0.758	1
SPEN	Amp_19q13.42	0.758	1
TP53	Del_17p12	0.758	1
VCPIP1	Amp_3q26.32	0.758	1
20q-Amp	Del_1p22.1	0.758	1
Amp_11p13	Del_1p22.1	0.758	1
APC	PIK3CA	0.759	1
CTCF	PIK3CA	0.759	1
NF1	Amp_15q26.3	0.759	1
ACTL6B	ARID1A	0.76	1
ARID1A	GPS2	0.76	1
ARID1A	1q-Del	0.76	1
C17orf95	22q-Del	0.76	1
FBXW7	Del_15q13.1	0.76	1
FOXA1	Del_8p23.2	0.76	1
ZMYM3	Del_4q35.1	0.76	1
16p-Amp	Del_8p23.2	0.76	1
1q-Amp	Del_18q23	0.76	1
C17orf95	1p-Del	0.761	1
C17orf95	Amp_14q21.1	0.761	1
CDC42EP1	1p-Del	0.761	1
MLL3	Del_4q35.1	0.761	1
SP3	Del_6q27	0.761	1
SPEN	7q-Amp	0.761	1
TGS1	Del_6p25.3	0.761	1
Amp_1q21.3	Del_11q25	0.761	1
CASZ1	14q-Del	0.762	1
CASZ1	Amp_19q12	0.762	1
CASZ1	Del_21q11.2	0.762	1
EYS	Del_9q34.2	0.762	1
FRMPD2	Amp_19q12	0.762	1
FRMPD2	Del_21q11.2	0.762	1
HRNR	11p-Del	0.762	1
HRNR	Del_9q34.2	0.762	1
KCNN3	Amp_1p22.3	0.762	1
MAP2K4	TPP2	0.762	1
MAP2K4	USP36	0.762	1
MAP2K4	ZFP36L1	0.762	1
MAP3K1	18q-Del	0.762	1
PTEN	14q-Del	0.762	1
RBMX	Del_21q11.2	0.762	1
TBL1XR1	Amp_1p22.3	0.762	1
17q-Amp	Del_4p16.3	0.762	1
17q-Amp	Del_16q24.3	0.762	1
Amp_1p22.3	Amp_3q26.32	0.762	1
APC	CTCF	0.763	1
ARID1A	18q-Del	0.763	1
ARID1A	Del_13q14.2	0.763	1
CTCF	MYH9	0.763	1
CTCF	SF3B1	0.763	1
MLL3	Del_10q23.31	0.763	1
TAF1L	Del_3p21.31	0.763	1
7p-Amp	Del_1p36.13	0.763	1
6q-Del	Amp_3p25.1	0.763	1
CBFB	Del_1p36.13	0.764	1
NBPF9	Amp_17q23.1	0.764	1
PIK3R1	Del_19p13.3	0.764	1
TAF1L	9p-Del	0.764	1
7p-Amp	16q-Del	0.764	1
17p-Del	Amp_13q34	0.764	1
18p-Del	Amp_1q21.3	0.764	1
22q-Del	Amp_6p23	0.764	1
Amp_3p25.1	Del_12p13.1	0.764	1
Amp_8p11.23	Del_18q23	0.764	1
Del_7p22.3	Del_12p13.1	0.764	1
AQP12A	Amp_19p13.12	0.765	1
EYS	Del_11p15.5	0.765	1
FGFR2	FOXA1	0.765	1
FOXA1	GPRIN2	0.765	1
FOXA1	NLGN3	0.765	1
KRAS	Amp_19p13.12	0.765	1
MAP2K4	Amp_17q23.1	0.765	1
RUFY1	Amp_19p13.12	0.765	1
SMAD4	16p-Del	0.765	1
SP3	Amp_19p13.12	0.765	1
TCP11	Amp_19p13.12	0.765	1
TFE3	16p-Del	0.765	1
VCPIP1	Amp_10p15.1	0.765	1
8p-Amp	Del_9q21.11	0.765	1
ACTL6B	20p-Amp	0.766	1
ACTL6B	Amp_17q12	0.766	1
ACTL6B	Del_11q13.1	0.766	1
C17orf95	Del_12q23.1	0.766	1
C17orf95	Del_12q24.31	0.766	1
CDC42EP1	Del_12q23.1	0.766	1
CDC42EP1	Del_12q24.31	0.766	1
CDKN1B	20p-Amp	0.766	1
GPS2	Del_11q13.1	0.766	1
IL1RAP	RUNX1	0.766	1
KCNN3	RUNX1	0.766	1
MAP2K4	Del_6p25.3	0.766	1
MUC6	8q-Amp	0.766	1
NBPF9	Del_12q23.1	0.766	1
NBPF9	Del_12q24.31	0.766	1
NF1	20p-Amp	0.766	1
ZBTB7C	17p-Del	0.766	1
ZFP36L1	Amp_11q13.3	0.766	1
20p-Amp	1q-Del	0.766	1
1q-Del	Del_11q13.1	0.766	1
Amp_19p13.12	Del_10q26.3	0.766	1
Amp_19q13.42	Del_5q11.2	0.766	1
CTCF	Del_6q27	0.767	1
MYH9	Del_6q27	0.767	1
PIK3CA	Del_22q13.32	0.767	1
SF3B1	Del_6q27	0.767	1
SMAD4	Del_16q24.3	0.767	1
TAF1L	11q-Del	0.767	1
ZFP36L2	Del_16q24.3	0.767	1
17q-Amp	Del_1p36.13	0.767	1
7q-Amp	Amp_11q14.1	0.767	1
9q-Del	Amp_3q26.32	0.767	1
Amp_4q13.3	Del_1p36.13	0.767	1
Amp_4q13.3	Del_17q21.31	0.767	1
CASZ1	Amp_12q15	0.768	1
CASZ1	Del_17q21.31	0.768	1
FRMPD2	Amp_12q15	0.768	1
FRMPD2	Del_7q36.1	0.768	1
GATA3	Del_21q11.2	0.768	1
MAP2K4	Amp_1p22.3	0.768	1
MLL3	RBMX	0.768	1
Amp_10p15.1	Del_6p25.3	0.768	1
Amp_10q22.3	Del_3p21.31	0.768	1
Del_7q36.1	Del_9p23	0.768	1
APC	Amp_19q13.42	0.769	1
ARID1A	6q-Del	0.769	1
CTCF	5p-Amp	0.769	1
CTCF	Amp_19q13.42	0.769	1
ERBB2	Amp_6p23	0.769	1
GATA3	TAF1L	0.769	1
GATA3	Del_14q24.1	0.769	1
HRNR	USP36	0.769	1
HRNR	ZFP36L1	0.769	1
MYH9	Amp_6q21	0.769	1
NCDN	Amp_15q26.3	0.769	1
PAX2	Del_13q14.2	0.769	1
RAB42	Amp_15q26.3	0.769	1
RB1	Amp_6p23	0.769	1
SF3B1	5p-Amp	0.769	1
SF3B1	Amp_19q13.42	0.769	1
ZBTB7C	Amp_15q26.3	0.769	1
ZNF362	Amp_15q26.3	0.769	1
ZNF362	Del_13q14.2	0.769	1
7p-Amp	Amp_13q34	0.769	1
Amp_1q44	Amp_20q13.2	0.769	1
Amp_8p11.21	Del_9p21.3	0.769	1
TPP2	Del_4q35.1	0.77	1
TPP2	Del_15q13.1	0.77	1
USP36	Del_4q35.1	0.77	1
ZFP36L2	Del_18q23	0.77	1
4p-Del	Amp_14q21.1	0.77	1
FGFR2	Del_1p36.13	0.771	1
PTEN	SMAD4	0.771	1
PTEN	TFE3	0.771	1
RB1	Del_19q13.32	0.771	1
SP3	Del_1p36.13	0.771	1
16p-Amp	Amp_3q26.32	0.771	1
7p-Amp	Del_11q13.1	0.771	1
MLL3	Del_10q26.3	0.772	1
MUC6	Del_14q24.1	0.772	1
17q-Del	Amp_12p13.33	0.772	1
4q-Del	6q-Del	0.772	1
9p-Del	Amp_8p11.23	0.772	1
9p-Del	Del_7q36.1	0.772	1
Amp_1p22.3	Amp_10q22.3	0.772	1
Amp_19q12	Del_11q25	0.772	1
Del_9q21.11	Del_21q11.2	0.772	1
C17orf95	Del_8p23.2	0.773	1
EYS	Amp_8q24.21	0.773	1
FOXA1	Del_17p12	0.773	1
HRNR	RUNX1	0.773	1
IL1RAP	Amp_17q23.1	0.773	1
KCNN3	NF1	0.773	1
KCNN3	TBX3	0.773	1
KDM6A	20q-Amp	0.773	1
KDM6A	Amp_11q14.1	0.773	1
MUC6	Del_16q24.3	0.773	1
NCOR1	Amp_19p13.12	0.773	1
NF1	TBL1XR1	0.773	1
PIK3R1	Del_16q24.3	0.773	1
RUNX1	5q-Del	0.773	1
TBL1XR1	TBX3	0.773	1
TBL1XR1	Del_10q23.31	0.773	1
TFE3	Del_17q21.31	0.773	1
VCPIP1	Del_10q23.31	0.773	1
ZFP36L2	Del_17q21.31	0.773	1
ZMYM3	Amp_11q14.1	0.773	1
20q-Amp	Del_15q13.1	0.773	1
Del_4q35.1	Del_6q15	0.773	1
Del_5q21.3	Del_6q15	0.773	1
CBFB	FGFR2	0.774	1
CBFB	GPRIN2	0.774	1
CBFB	IRS4	0.774	1
CBFB	NLGN3	0.774	1
SMAD4	8q-Amp	0.774	1
TAF1L	8p-Amp	0.774	1
TAF1L	1p-Del	0.774	1
TBL1XR1	Del_11q23.3	0.774	1
TFE3	8q-Amp	0.774	1
17q-Del	Amp_8p11.21	0.774	1
Amp_3q26.32	Del_12p13.1	0.774	1
Amp_6q21	Del_1p22.1	0.774	1
Amp_8p11.21	Del_21q11.2	0.774	1
Amp_19q12	Del_22q13.32	0.774	1
AQP12A	Amp_10q22.3	0.775	1
FBXW7	13q-Del	0.775	1
ICOSLG	Amp_10q22.3	0.775	1
KRAS	Amp_10q22.3	0.775	1
MAP2K4	TBX3	0.775	1
SP3	Amp_10q22.3	0.775	1
SPEN	Amp_13q34	0.775	1
TCP11	Amp_10q22.3	0.775	1
1q-Amp	7p-Amp	0.775	1
7q-Amp	Amp_13q34	0.775	1
ARID1A	Amp_15q26.3	0.776	1
CTCF	FBXW7	0.776	1
CTCF	KDM6A	0.776	1
CTCF	ZMYM3	0.776	1
ERBB2	Amp_1q44	0.776	1
FBXW7	SF3B1	0.776	1
SF3B1	ZMYM3	0.776	1
SPEN	ZFP36L1	0.776	1
TBL1XR1	Del_10q26.3	0.776	1
TPP2	7q-Amp	0.776	1
USP36	7q-Amp	0.776	1
VCPIP1	Del_10q26.3	0.776	1
ZFP36L1	7q-Amp	0.776	1
9q-Del	Amp_1p22.3	0.776	1
TAF1L	Del_17p12	0.777	1
TPP2	16p-Amp	0.777	1
USP36	16p-Amp	0.777	1
ZFP36L1	16p-Amp	0.777	1
7p-Amp	Del_9q21.11	0.777	1
16p-Del	Amp_11q13.3	0.777	1
18p-Del	Amp_1q44	0.777	1
22q-Del	Del_5q11.2	0.777	1
Amp_1q21.3	Del_9q21.11	0.777	1
Amp_6p23	Amp_11q14.1	0.777	1
FGFR2	11p-Del	0.778	1
FGFR2	Del_9q34.2	0.778	1
MED23	TAF1L	0.778	1
MUC6	TAF1L	0.778	1
MYH9	Amp_10p15.1	0.778	1
PIK3CA	RBMX	0.778	1
Amp_8p11.21	Del_17p12	0.778	1
PIK3R1	Amp_15q26.3	0.779	1
RUNX1	11q-Del	0.779	1
ZNF362	Amp_8p11.23	0.779	1
ACTL6B	13q-Del	0.78	1
AQP12A	17q-Amp	0.78	1
AQP12A	Amp_4q13.3	0.78	1
AQP12A	Del_3p21.31	0.78	1
GATA3	KCNN3	0.78	1
ICOSLG	17q-Amp	0.78	1
ICOSLG	Amp_4q13.3	0.78	1
ICOSLG	Del_9p21.3	0.78	1
IL1RAP	4p-Del	0.78	1
KRAS	17q-Amp	0.78	1
KRAS	Amp_4q13.3	0.78	1
MAP3K1	TGS1	0.78	1
RUFY1	17q-Amp	0.78	1
RUFY1	Amp_4q13.3	0.78	1
RUFY1	Del_9p21.3	0.78	1
RUFY1	Del_11q23.3	0.78	1
SP3	Amp_4q13.3	0.78	1
SPEN	11p-Del	0.78	1
TBL1XR1	4p-Del	0.78	1
TCP11	17q-Amp	0.78	1
TCP11	Amp_4q13.3	0.78	1
TCP11	Del_3p21.31	0.78	1
TCP11	Del_9p21.3	0.78	1
TGS1	4q-Del	0.78	1
TPP2	20q-Amp	0.78	1
USP36	20q-Amp	0.78	1
1q-Amp	Amp_10p15.1	0.78	1
7q-Amp	Del_9q34.2	0.78	1
13q-Del	1q-Del	0.78	1
ARID1A	IL1RAP	0.781	1
ARID1A	KCNN3	0.781	1
ARID1A	TBL1XR1	0.781	1
CDH1	FBXW7	0.781	1
CDH1	ZMYM3	0.781	1
CDH1	Amp_11q13.3	0.781	1
TFE3	Del_9p23	0.781	1
ZFP36L2	Del_9p23	0.781	1
8p-Amp	Amp_19p13.12	0.781	1
8p-Amp	Del_11p15.5	0.781	1
18p-Del	Amp_19p13.12	0.781	1
Amp_3q26.32	Amp_11q14.1	0.781	1
ACTL6B	Amp_6p23	0.782	1
ARID1A	Amp_1q21.3	0.782	1
CTCF	Del_1p36.13	0.782	1
PTPN22	Amp_6p23	0.782	1
8p-Amp	Del_5q21.3	0.782	1
1q-Del	Amp_6p23	0.782	1
ARID1A	Del_16q24.3	0.783	1
C17orf95	Del_19q13.32	0.783	1
CASZ1	9q-Del	0.783	1
CDC42EP1	Del_19q13.32	0.783	1
FRMPD2	9q-Del	0.783	1
IL1RAP	16q-Del	0.783	1
MLL3	13q-Del	0.783	1
NBPF9	Del_19q13.32	0.783	1
NCDN	5q-Del	0.783	1
PAX2	5q-Del	0.783	1
RAB42	5q-Del	0.783	1
RBMX	9q-Del	0.783	1
RUFY1	11q-Del	0.783	1
ZBTB7C	5q-Del	0.783	1
ZNF362	5q-Del	0.783	1
17q-Amp	Amp_3q26.32	0.783	1
17q-Amp	Amp_10q22.3	0.783	1
11p-Del	Amp_15q26.3	0.783	1
Amp_12p13.33	Amp_17q23.1	0.783	1
ACTL6B	FOXA1	0.784	1
CDKN1B	FOXA1	0.784	1
EYS	GPRIN2	0.784	1
FGFR2	Del_9p21.3	0.784	1
FOXA1	1q-Del	0.784	1
NCOR1	Amp_15q26.3	0.784	1
PTEN	20p-Amp	0.784	1
Amp_1p22.3	Del_12p13.1	0.784	1
Del_16q24.3	Del_19q13.32	0.784	1
AQP12A	NCOR1	0.785	1
FBXW7	Amp_11p13	0.785	1
FBXW7	Del_5q11.2	0.785	1
ICOSLG	NCOR1	0.785	1
KDM6A	Amp_11p13	0.785	1
NCOR1	SP3	0.785	1
NCOR1	TCP11	0.785	1
TGS1	Del_9q21.11	0.785	1
ZMYM3	Amp_11p13	0.785	1
16p-Amp	Del_7p22.3	0.785	1
8p-Amp	Del_9p21.3	0.785	1
1p-Del	Amp_20q13.2	0.785	1
9q-Del	Amp_10p15.1	0.785	1
Amp_8p11.23	Del_12q24.31	0.785	1
APC	Amp_8p11.21	0.786	1
CDH1	TPP2	0.786	1
CDH1	ZFP36L1	0.786	1
CTCF	Del_22q13.32	0.786	1
ERBB2	MYB	0.786	1
ERBB2	Del_7p22.3	0.786	1
HRNR	Del_12q23.1	0.786	1
MYH9	Del_11q25	0.786	1
RB1	TGS1	0.786	1
7p-Amp	22q-Del	0.786	1
8p-Del	Del_2q37.3	0.786	1
ARID1A	Amp_8p11.23	0.787	1
C17orf95	7p-Amp	0.787	1
CDC42EP1	7p-Amp	0.787	1
CTCF	Del_10q23.31	0.787	1
FGFR2	11q-Del	0.787	1
KCNN3	18q-Del	0.787	1
NCDN	Amp_11p13	0.787	1
NCOR1	Del_1p22.1	0.787	1
PAX2	Amp_11p13	0.787	1
RAB42	Amp_11p13	0.787	1
TPP2	Amp_8p11.21	0.787	1
ZFP36L1	Del_22q13.32	0.787	1
ZNF362	Amp_11p13	0.787	1
20q-Amp	Del_7q36.1	0.787	1
17q-Del	Amp_20q13.2	0.787	1
Amp_1q44	Amp_17q23.1	0.787	1
ERBB2	Del_9p23	0.788	1
NF1	Del_11p15.5	0.788	1
PTEN	Amp_3p25.1	0.788	1
PTEN	Del_7p22.3	0.788	1
RUFY1	16q-Del	0.788	1
TCP11	16q-Del	0.788	1
18q-Del	Amp_19p13.12	0.788	1
ACTL6B	Del_6q15	0.789	1
CBFB	CDH1	0.789	1
EYS	Del_4q35.1	0.789	1
FOXA1	16p-Del	0.789	1
MAP2K4	SMAD4	0.789	1
MED23	17p-Del	0.789	1
PTPN22	Del_6q15	0.789	1
RUNX1	USP36	0.789	1
RUNX1	ZFP36L1	0.789	1
TPP2	Del_5q11.2	0.789	1
ZFP36L1	Del_4p16.3	0.789	1
ZFP36L1	Del_5q11.2	0.789	1
7p-Amp	1p-Del	0.789	1
1q-Del	Del_6q15	0.789	1
Amp_17q12	Amp_19q13.42	0.789	1
ARID1A	Del_11q25	0.79	1
CTCF	MED23	0.79	1
CTCF	MUC6	0.79	1
CTCF	PIK3R1	0.79	1
FOXA1	Amp_1p22.3	0.79	1
HRNR	Del_18q23	0.79	1
KDM6A	Del_1p22.1	0.79	1
MED23	MYH9	0.79	1
MED23	SF3B1	0.79	1
MYB	14q-Del	0.79	1
NCDN	5p-Amp	0.79	1
NCDN	Amp_19q13.42	0.79	1
PAX2	5p-Amp	0.79	1
PAX2	Amp_6q21	0.79	1
PAX2	Amp_19q13.42	0.79	1
PIK3R1	SF3B1	0.79	1
RAB42	5p-Amp	0.79	1
RAB42	Amp_6q21	0.79	1
RAB42	Amp_19q13.42	0.79	1
TGS1	14q-Del	0.79	1
TGS1	17q-Del	0.79	1
TGS1	Del_21q11.2	0.79	1
ZBTB7C	5p-Amp	0.79	1
ZBTB7C	Amp_6q21	0.79	1
ZBTB7C	Amp_19q13.42	0.79	1
ZNF362	Amp_6q21	0.79	1
17q-Amp	Amp_1p22.3	0.79	1
5p-Amp	Amp_11p13	0.79	1
Amp_1q21.3	Amp_14q21.1	0.79	1
Amp_4q13.3	Del_3p21.31	0.79	1
C17orf95	Amp_3p25.1	0.791	1
C17orf95	Del_7p22.3	0.791	1
CDC42EP1	Amp_3p25.1	0.791	1
CDC42EP1	Del_7p22.3	0.791	1
FBXW7	Amp_6q21	0.791	1
GPRIN2	Del_6p25.3	0.791	1
IL1RAP	6q-Del	0.791	1
KDM6A	Amp_6q21	0.791	1
MED23	Del_4q35.1	0.791	1
NBPF9	Amp_3p25.1	0.791	1
NBPF9	Del_7p22.3	0.791	1
SPEN	1p-Del	0.791	1
TAF1L	8q-Amp	0.791	1
TBL1XR1	6q-Del	0.791	1
VCPIP1	6q-Del	0.791	1
ZMYM3	5p-Amp	0.791	1
ZMYM3	Amp_6q21	0.791	1
ZMYM3	Amp_19q13.42	0.791	1
16p-Amp	Del_11q25	0.791	1
7q-Amp	1p-Del	0.791	1
APC	Del_10q26.3	0.792	1
CTCF	Del_10q26.3	0.792	1
ZFP36L1	Amp_20q13.2	0.792	1
Amp_10p15.1	Del_18q23	0.792	1
Amp_17q12	Del_5q21.3	0.792	1
Del_1p22.1	Del_5q21.3	0.792	1
ACTL6B	CBFB	0.793	1
CBFB	PTPN22	0.793	1
CBFB	1q-Del	0.793	1
EYS	17q-Amp	0.793	1
TPP2	Del_1p22.1	0.793	1
Amp_1q21.3	Del_7p22.3	0.793	1
Amp_17q23.1	Del_12q24.31	0.793	1
APC	1p-Del	0.794	1
CTCF	1p-Del	0.794	1
EYS	Del_1p36.13	0.794	1
IL1RAP	Del_16q24.3	0.794	1
SMAD2	Del_13q14.2	0.794	1
ZFP36L1	Amp_8q24.21	0.794	1
ZFP36L2	Del_13q14.2	0.794	1
14q-Del	Amp_11p13	0.794	1
ACTL6B	8q-Amp	0.795	1
AQP12A	16p-Del	0.795	1
HRNR	SMAD4	0.795	1
HRNR	ZFP36L2	0.795	1
ICOSLG	16p-Del	0.795	1
MUC6	Del_13q14.2	0.795	1
PIK3R1	1q-Amp	0.795	1
SMAD4	Del_19p13.3	0.795	1
SP3	16p-Del	0.795	1
TCP11	16p-Del	0.795	1
TGS1	8p-Del	0.795	1
ZFP36L2	Del_19p13.3	0.795	1
1p-Del	Del_17q21.31	0.795	1
6q-Del	Amp_19p13.12	0.795	1
Amp_14q21.1	Del_17q21.31	0.795	1
APC	GATA3	0.796	1
GATA3	SF3B1	0.796	1
NF1	ZFP36L1	0.796	1
TBX3	USP36	0.796	1
17q-Amp	Amp_10p15.1	0.796	1
7p-Amp	Del_4p16.3	0.796	1
6q-Del	Del_10q23.31	0.796	1
Amp_8p11.21	Del_12q23.1	0.796	1
Amp_8p11.21	Del_12q24.31	0.796	1
Amp_15q26.3	Del_12q23.1	0.796	1
CASZ1	Del_19p13.3	0.797	1
HRNR	Del_12p13.1	0.797	1
MLL3	Amp_1q44	0.797	1
NCDN	Amp_8q24.21	0.797	1
NCDN	Amp_13q34	0.797	1
PAX2	Amp_8q24.21	0.797	1
PIK3CA	20p-Amp	0.797	1
RAB42	Amp_8q24.21	0.797	1
RAB42	Amp_13q34	0.797	1
ZBTB7C	Amp_13q34	0.797	1
ZFP36L1	8p-Del	0.797	1
ZNF362	Amp_13q34	0.797	1
11q-Del	Del_21q11.2	0.797	1
Amp_17q23.1	Del_2q37.3	0.797	1
EYS	16p-Amp	0.798	1
FOXA1	PTEN	0.798	1
NCDN	Amp_11q13.3	0.798	1
PAX2	Amp_11q13.3	0.798	1
ZNF362	Amp_11q13.3	0.798	1
8q-Amp	6q-Del	0.798	1
6q-Del	Amp_17q12	0.798	1
Amp_1p22.3	Amp_6q21	0.798	1
Amp_1p22.3	Amp_19q13.42	0.798	1
Amp_4q13.3	Del_9q34.2	0.798	1
Amp_8p11.23	Del_9q34.2	0.798	1
APC	8p-Del	0.799	1
GATA3	MAP2K4	0.799	1
MED23	16p-Amp	0.799	1
MYH9	8p-Del	0.799	1
NCOR1	1q-Amp	0.799	1
PTPN22	Amp_8q24.21	0.799	1
SF3B1	8p-Del	0.799	1
TP53	TPP2	0.799	1
TP53	USP36	0.799	1
6q-Del	Del_9q34.2	0.799	1
CDC42EP1	Amp_19p13.12	0.8	1
CTCF	Del_12q24.31	0.8	1
FGFR2	Del_12p13.1	0.8	1
HRNR	Del_6q27	0.8	1
KRAS	Amp_1q44	0.8	1
MLL3	18q-Del	0.8	1
NBPF9	Amp_19p13.12	0.8	1
NF1	Del_9p21.3	0.8	1
PTEN	SP3	0.8	1
PTEN	TCP11	0.8	1
SF3B1	11q-Del	0.8	1
SF3B1	Del_12q23.1	0.8	1
SF3B1	Del_12q24.31	0.8	1
SP3	Amp_1q44	0.8	1
TGS1	Del_8p23.2	0.8	1
5p-Amp	Amp_19q13.42	0.8	1
Del_12p13.1	Del_15q13.1	0.8	1
ACTL6B	EYS	0.801	1
CBFB	MLL3	0.801	1
CDC42EP1	PIK3CA	0.801	1
EYS	1q-Del	0.801	1
FBXW7	MED23	0.801	1
FBXW7	MUC6	0.801	1
FOXA1	Del_20p13	0.801	1
KDM6A	PIK3R1	0.801	1
MUC6	ZMYM3	0.801	1
NBPF9	PIK3CA	0.801	1
NCOR1	Del_16q24.3	0.801	1
PIK3R1	5q-Del	0.801	1
SMAD2	7q-Amp	0.801	1
SMAD4	7q-Amp	0.801	1
TFE3	7q-Amp	0.801	1
VCPIP1	Del_11q13.1	0.801	1
ZFP36L2	7q-Amp	0.801	1
ZFP36L2	Del_11p15.5	0.801	1
8q-Amp	Del_19q13.32	0.801	1
1p-Del	Amp_3p25.1	0.801	1
Amp_1q44	Amp_11q14.1	0.801	1
Amp_6p23	Del_17q21.31	0.801	1
Amp_14q21.1	Del_7p22.3	0.801	1
Amp_19p13.12	Del_6q27	0.801	1
Del_6p25.3	Del_12p13.1	0.801	1
ERBB2	GPRIN2	0.802	1
ERBB2	NLGN3	0.802	1
FBXW7	Amp_1p22.3	0.802	1
FBXW7	Amp_13q34	0.802	1
GPRIN2	RB1	0.802	1
IRS4	RB1	0.802	1
IRS4	1q-Amp	0.802	1
KDM6A	Amp_13q34	0.802	1
NLGN3	RB1	0.802	1
TPP2	Amp_1p22.3	0.802	1
USP36	Amp_1p22.3	0.802	1
ZMYM3	Amp_1p22.3	0.802	1
ARID1A	ZFP36L1	0.803	1
CASZ1	CTCF	0.803	1
CASZ1	Amp_15q26.3	0.803	1
CBFB	16p-Del	0.803	1
CTCF	FRMPD2	0.803	1
CTCF	RBMX	0.803	1
FRMPD2	MYH9	0.803	1
FRMPD2	SF3B1	0.803	1
GPS2	Del_6q27	0.803	1
PIK3R1	Amp_11q14.1	0.803	1
RBMX	SF3B1	0.803	1
RBMX	Amp_15q26.3	0.803	1
TAF1L	Amp_17q23.1	0.803	1
20q-Amp	17p-Del	0.803	1
1q-Del	Del_6q27	0.803	1
Amp_12q15	Del_17p12	0.803	1
CDH1	MLL3	0.804	1
FOXA1	KCNN3	0.804	1
FOXA1	VCPIP1	0.804	1
NCDN	1p-Del	0.804	1
NCDN	Amp_14q21.1	0.804	1
NCOR1	Amp_4q13.3	0.804	1
PAX2	1p-Del	0.804	1
PAX2	Amp_14q21.1	0.804	1
RAB42	1p-Del	0.804	1
RAB42	Amp_14q21.1	0.804	1
ZBTB7C	1p-Del	0.804	1
ZBTB7C	Amp_14q21.1	0.804	1
ZNF362	1p-Del	0.804	1
ZNF362	Amp_14q21.1	0.804	1
20q-Amp	1p-Del	0.804	1
8p-Amp	Del_9p23	0.804	1
8q-Amp	Del_14q24.1	0.804	1
Amp_11p13	Amp_12q15	0.804	1
MLL3	Del_3p21.31	0.805	1
MLL3	Del_9p21.3	0.805	1
TPP2	Amp_10p15.1	0.805	1
USP36	Amp_10p15.1	0.805	1
ZFP36L1	Amp_10p15.1	0.805	1
1q-Amp	Amp_3p25.1	0.805	1
1q-Amp	Amp_6p23	0.805	1
5p-Amp	Amp_10p15.1	0.805	1
22q-Del	Amp_12q15	0.805	1
5q-Del	Amp_4q13.3	0.805	1
ERBB2	Del_9q34.2	0.806	1
KDM6A	Amp_10p15.1	0.806	1
RB1	11p-Del	0.806	1
ZMYM3	Amp_10p15.1	0.806	1
8p-Amp	16q-Del	0.806	1
8q-Amp	Del_11q25	0.806	1
4p-Del	Amp_10q22.3	0.806	1
6q-Del	Del_10q26.3	0.806	1
8p-Del	Amp_3q26.32	0.806	1
9p-Del	Amp_3q26.32	0.806	1
Amp_1q44	Amp_12p13.33	0.806	1
Amp_6q21	Del_21q11.2	0.806	1
C17orf95	13q-Del	0.807	1
CDC42EP1	13q-Del	0.807	1
NBPF9	13q-Del	0.807	1
NCOR1	Amp_1p22.3	0.807	1
TAF1L	Del_19q13.32	0.807	1
TPP2	Del_17p12	0.807	1
20p-Amp	Amp_15q26.3	0.807	1
8p-Del	Amp_6q21	0.807	1
Amp_3p25.1	Del_7q36.1	0.807	1
CDKN1B	Amp_1q44	0.808	1
FGFR2	4q-Del	0.808	1
FGFR2	Amp_11q13.3	0.808	1
IRS4	Amp_11q13.3	0.808	1
NCDN	Del_12q23.1	0.808	1
NCDN	Del_12q24.31	0.808	1
PAX2	Del_12q24.31	0.808	1
RAB42	Del_12q23.1	0.808	1
RAB42	Del_12q24.31	0.808	1
TGS1	9q-Del	0.808	1
TGS1	Del_20p13	0.808	1
ZBTB7C	Del_12q23.1	0.808	1
ZBTB7C	Del_12q24.31	0.808	1
ZNF362	Del_12q24.31	0.808	1
7p-Amp	Amp_1q44	0.808	1
7q-Amp	Del_11q23.3	0.808	1
8q-Amp	Amp_11q14.1	0.808	1
6q-Del	Del_7q36.1	0.808	1
Amp_1p22.3	Del_19q13.32	0.808	1
Amp_8p11.23	Amp_13q34	0.808	1
Del_1p22.1	Del_21q11.2	0.808	1
ACTL6B	Del_9q34.2	0.809	1
C17orf95	Amp_10q22.3	0.809	1
CDC42EP1	Amp_10q22.3	0.809	1
CTCF	6q-Del	0.809	1
ERBB2	TP53	0.809	1
GPS2	11p-Del	0.809	1
MAP2K4	17q-Del	0.809	1
NBPF9	Amp_10q22.3	0.809	1
PTPN22	Del_9q34.2	0.809	1
RB1	Del_19p13.3	0.809	1
TFE3	Del_8p23.2	0.809	1
ZFP36L2	Del_8p23.2	0.809	1
11p-Del	1q-Del	0.809	1
Amp_10p15.1	Del_11q13.1	0.809	1
Amp_10q22.3	Del_11p15.5	0.809	1
Amp_12p13.33	Del_18q23	0.809	1
EYS	Del_3p21.31	0.81	1
CBFB	IL1RAP	0.811	1
CBFB	KCNN3	0.811	1
CBFB	VCPIP1	0.811	1
CDH1	PIK3R1	0.811	1
FOXA1	Del_10q26.3	0.811	1
HRNR	4q-Del	0.811	1
MUC6	Amp_8q24.21	0.811	1
ZFP36L1	Del_10q23.31	0.811	1
16q-Del	Del_9q21.11	0.811	1
Amp_1q21.3	Del_4p16.3	0.811	1
Amp_10p15.1	Del_17p12	0.811	1
Amp_11q13.3	Del_17q21.31	0.811	1
CDH1	11q-Del	0.812	1
ICOSLG	Amp_1q21.3	0.812	1
KRAS	Amp_1q21.3	0.812	1
MLL3	Del_5q11.2	0.812	1
MUC6	5p-Amp	0.812	1
MUC6	Amp_6q21	0.812	1
MUC6	Amp_19q13.42	0.812	1
NCDN	Del_22q13.32	0.812	1
PAX2	Amp_8p11.21	0.812	1
PIK3R1	5p-Amp	0.812	1
SPEN	Del_18q23	0.812	1
TCP11	Amp_1q21.3	0.812	1
ZNF362	Amp_8p11.21	0.812	1
ZNF362	Del_22q13.32	0.812	1
20p-Amp	Del_9q21.11	0.812	1
20p-Amp	Del_11q13.1	0.812	1
Amp_3p25.1	Del_5q11.2	0.812	1
Amp_8q24.21	Del_1p22.1	0.812	1
Amp_12p13.33	Del_11q13.1	0.812	1
Amp_14q21.1	Del_6q15	0.812	1
C17orf95	Amp_4q13.3	0.813	1
CDC42EP1	17q-Amp	0.813	1
CDC42EP1	Del_6q15	0.813	1
MED23	MUC6	0.813	1
MED23	PIK3R1	0.813	1
MUC6	PIK3R1	0.813	1
NCOR1	11p-Del	0.813	1
NLGN3	Amp_12p13.33	0.813	1
RUNX1	TFE3	0.813	1
RUNX1	ZFP36L2	0.813	1
ZBTB7C	Amp_1q21.3	0.813	1
1q-Amp	20q-Amp	0.813	1
17q-Del	Amp_8p11.23	0.813	1
Del_9q34.2	Del_21q11.2	0.813	1
ACTL6B	Del_1p36.13	0.814	1
CDKN1B	17p-Del	0.814	1
EYS	17q-Del	0.814	1
FBXW7	Del_10q23.31	0.814	1
IL1RAP	Amp_17q12	0.814	1
KDM6A	Amp_14q21.1	0.814	1
SMAD4	Del_4q35.1	0.814	1
SMAD4	Del_15q13.1	0.814	1
TAF1L	7p-Amp	0.814	1
TGS1	Del_9p23	0.814	1
17q-Amp	Amp_11p13	0.814	1
Amp_14q21.1	Del_9p23	0.814	1
FRMPD2	8q-Amp	0.815	1
IL1RAP	Amp_6p23	0.815	1
MED23	Del_4p16.3	0.815	1
MLL3	5p-Amp	0.815	1
PIK3R1	Del_5q11.2	0.815	1
RBMX	8q-Amp	0.815	1
TPP2	9p-Del	0.815	1
ZFP36L1	9p-Del	0.815	1
ZFP36L1	Del_10q26.3	0.815	1
17q-Amp	Del_19p13.3	0.815	1
16p-Del	Amp_10q22.3	0.815	1
Amp_1p22.3	Del_2q37.3	0.815	1
Amp_6q21	Del_7q36.1	0.815	1
Del_10q26.3	Del_16q24.3	0.815	1
AQP12A	MAP2K4	0.816	1
FBXW7	PIK3CA	0.816	1
ICOSLG	MAP2K4	0.816	1
KDM6A	Del_1p36.13	0.816	1
MAP2K4	RUFY1	0.816	1
MAP2K4	SP3	0.816	1
MAP2K4	TCP11	0.816	1
MAP2K4	Del_7q36.1	0.816	1
NCDN	Amp_20q13.2	0.816	1
NCOR1	11q-Del	0.816	1
RUFY1	Del_11q25	0.816	1
TPP2	Amp_1q21.3	0.816	1
ZBTB7C	Amp_20q13.2	0.816	1
ZMYM3	Del_1p36.13	0.816	1
ZNF362	Amp_20q13.2	0.816	1
17q-Amp	22q-Del	0.816	1
17q-Amp	9p-Del	0.816	1
17q-Amp	Del_10q26.3	0.816	1
20p-Amp	Amp_19p13.12	0.816	1
9p-Del	Amp_4q13.3	0.816	1
APC	MYB	0.817	1
CTCF	MYB	0.817	1
CTCF	TGS1	0.817	1
EYS	16p-Del	0.817	1
EYS	Amp_17q23.1	0.817	1
FGFR2	Amp_19q12	0.817	1
FOXA1	Amp_17q12	0.817	1
GPRIN2	Del_21q11.2	0.817	1
HRNR	Del_9q21.11	0.817	1
IRS4	17q-Del	0.817	1
IRS4	Amp_19q12	0.817	1
MYB	MYH9	0.817	1
MYB	SF3B1	0.817	1
NBPF9	NCOR1	0.817	1
NF1	RUNX1	0.817	1
NLGN3	17q-Del	0.817	1
NLGN3	Del_16q24.3	0.817	1
NLGN3	Del_21q11.2	0.817	1
TBL1XR1	Del_11q25	0.817	1
TBX3	8q-Amp	0.817	1
1q-Amp	8p-Amp	0.817	1
20p-Amp	1p-Del	0.817	1
20p-Amp	Del_2q37.3	0.817	1
18p-Del	5q-Del	0.817	1
GATA3	TPP2	0.818	1
GATA3	USP36	0.818	1
GATA3	ZFP36L1	0.818	1
ZFP36L1	4p-Del	0.818	1
1q-Amp	11p-Del	0.818	1
Amp_17q23.1	Del_7p22.3	0.818	1
ACTL6B	ERBB2	0.819	1
CBFB	15q-Del	0.819	1
CDKN1B	ERBB2	0.819	1
CDKN1B	RB1	0.819	1
ERBB2	GPS2	0.819	1
ERBB2	PTPN22	0.819	1
ERBB2	1q-Del	0.819	1
ERBB2	Del_6q15	0.819	1
EYS	KCNN3	0.819	1
EYS	TBL1XR1	0.819	1
FBXW7	Del_12q24.31	0.819	1
GATA3	15q-Del	0.819	1
GPS2	RB1	0.819	1
HRNR	Del_1p36.13	0.819	1
KDM6A	Del_12q24.31	0.819	1
NCDN	8p-Del	0.819	1
NF1	TFE3	0.819	1
PTPN22	RB1	0.819	1
SMAD4	TBX3	0.819	1
TBX3	ZFP36L2	0.819	1
ZMYM3	Del_12q23.1	0.819	1
ZNF362	8p-Del	0.819	1
16p-Amp	15q-Del	0.819	1
20q-Amp	Del_12q23.1	0.819	1
7p-Amp	9q-Del	0.819	1
7p-Amp	Del_20p13	0.819	1
13q-Del	Amp_19q13.42	0.819	1
ERBB2	Del_17p12	0.82	1
EYS	Del_7q36.1	0.82	1
PTPN22	Del_6p25.3	0.82	1
RB1	Del_17p12	0.82	1
SMAD2	16p-Amp	0.82	1
TAF1L	Del_7p22.3	0.82	1
ZFP36L2	16p-Amp	0.82	1
17q-Amp	Del_6p25.3	0.82	1
5p-Amp	Del_10q23.31	0.82	1
13q-Del	Amp_4q13.3	0.82	1
Amp_1q44	Del_10q23.31	0.82	1
Amp_4q13.3	Del_6p25.3	0.82	1
ERBB2	Del_6p25.3	0.821	1
FGFR2	MLL3	0.821	1
FGFR2	Amp_12q15	0.821	1
FGFR2	Del_7q36.1	0.821	1
FOXA1	8p-Amp	0.821	1
FOXA1	18p-Del	0.821	1
GPRIN2	MLL3	0.821	1
GPRIN2	TAF1L	0.821	1
GPRIN2	Amp_12q15	0.821	1
GPRIN2	Del_7q36.1	0.821	1
HRNR	ICOSLG	0.821	1
HRNR	SP3	0.821	1
HRNR	TCP11	0.821	1
ICOSLG	Del_18q23	0.821	1
IRS4	MLL3	0.821	1
IRS4	TAF1L	0.821	1
NLGN3	Del_7q36.1	0.821	1
PIK3R1	Del_6q15	0.821	1
TPP2	8p-Amp	0.821	1
Amp_1p22.3	Del_9q21.11	0.821	1
Amp_8p11.21	Amp_20q13.2	0.821	1
ERBB2	Amp_4q13.3	0.822	1
FRMPD2	Del_4q35.1	0.822	1
FRMPD2	Del_15q13.1	0.822	1
GATA3	17q-Amp	0.822	1
GATA3	Amp_4q13.3	0.822	1
MYH9	Del_11q13.1	0.822	1
NCDN	Del_19q13.32	0.822	1
RAB42	Del_19q13.32	0.822	1
RBMX	Del_4q35.1	0.822	1
SF3B1	20p-Amp	0.822	1
ZBTB7C	Del_19q13.32	0.822	1
20p-Amp	Del_19p13.3	0.822	1
5p-Amp	Amp_4q13.3	0.822	1
Amp_6p23	Amp_11q13.3	0.822	1
FRMPD2	5q-Del	0.823	1
ICOSLG	Del_17q21.31	0.823	1
RUFY1	Del_17q21.31	0.823	1
SMAD4	20q-Amp	0.823	1
SP3	Del_17q21.31	0.823	1
SPEN	Del_16q24.3	0.823	1
TFE3	Amp_11q14.1	0.823	1
18q-Del	Amp_8p11.23	0.823	1
18q-Del	Del_6p25.3	0.823	1
Amp_14q21.1	Amp_19p13.12	0.823	1
ARID1A	Del_3p21.31	0.824	1
FOXA1	TPP2	0.824	1
FOXA1	ZFP36L1	0.824	1
GATA3	Del_11q23.3	0.824	1
HRNR	14q-Del	0.824	1
HRNR	Amp_19q12	0.824	1
HRNR	Del_21q11.2	0.824	1
SPEN	Del_10q23.31	0.824	1
5p-Amp	Amp_11q13.3	0.824	1
11p-Del	Amp_12q15	0.824	1
Amp_6q21	Amp_11q13.3	0.824	1
Amp_12q15	Del_14q24.1	0.824	1
Del_7q36.1	Del_14q24.1	0.824	1
ACTL6B	Del_9p21.3	0.825	1
CTCF	Del_19q13.32	0.825	1
17q-Amp	16p-Del	0.825	1
18q-Del	5q-Del	0.825	1
Amp_1q21.3	Del_5q21.3	0.825	1
Amp_11q14.1	Amp_19p13.12	0.825	1
Amp_14q21.1	Del_5q11.2	0.825	1
APC	Del_17p12	0.826	1
CASZ1	MED23	0.826	1
CDC42EP1	16p-Del	0.826	1
CDH1	Amp_11q14.1	0.826	1
FBXW7	8p-Amp	0.826	1
FOXA1	18q-Del	0.826	1
FRMPD2	MED23	0.826	1
GATA3	Amp_1p22.3	0.826	1
MYH9	Del_17p12	0.826	1
PAX2	7p-Amp	0.826	1
RAB42	7p-Amp	0.826	1
RB1	Del_22q13.32	0.826	1
RUNX1	Del_12q23.1	0.826	1
RUNX1	Del_12q24.31	0.826	1
TPP2	Amp_17q23.1	0.826	1
ZBTB7C	7p-Amp	0.826	1
ZNF362	7p-Amp	0.826	1
17q-Amp	Del_11q23.3	0.826	1
15q-Del	Amp_11q14.1	0.826	1
Amp_11q14.1	Del_20p13	0.826	1
ARID1A	RUNX1	0.827	1
FBXW7	MYB	0.827	1
FBXW7	TGS1	0.827	1
ICOSLG	SPEN	0.827	1
ICOSLG	7q-Amp	0.827	1
KDM6A	MYB	0.827	1
KRAS	7q-Amp	0.827	1
MAP2K4	8p-Del	0.827	1
NF1	TBX3	0.827	1
RUFY1	7q-Amp	0.827	1
SP3	7q-Amp	0.827	1
TCP11	7q-Amp	0.827	1
TGS1	ZMYM3	0.827	1
8p-Amp	Del_20p13	0.827	1
11q-Del	Amp_15q26.3	0.827	1
11q-Del	Del_4q35.1	0.827	1
ACTL6B	Del_12p13.1	0.828	1
CDH1	SMAD4	0.828	1
FRMPD2	Amp_11p13	0.828	1
RBMX	Amp_11p13	0.828	1
SMAD4	Amp_11q13.3	0.828	1
TFE3	Amp_11q13.3	0.828	1
8q-Amp	Del_6p25.3	0.828	1
11q-Del	Del_12p13.1	0.828	1
16q-Del	Del_19q13.32	0.828	1
9p-Del	Amp_6q21	0.828	1
CASZ1	16p-Amp	0.829	1
KDM6A	Del_3p21.31	0.829	1
KDM6A	Del_9p21.3	0.829	1
PAX2	Amp_3p25.1	0.829	1
PAX2	Del_7p22.3	0.829	1
PIK3R1	Amp_1p22.3	0.829	1
PIK3R1	Del_8p23.2	0.829	1
PIK3R1	Del_11q23.3	0.829	1
PTEN	Del_11q25	0.829	1
RAB42	Amp_3p25.1	0.829	1
RAB42	Del_7p22.3	0.829	1
SPEN	Del_10q26.3	0.829	1
ZBTB7C	Amp_3p25.1	0.829	1
ZBTB7C	Del_7p22.3	0.829	1
ZNF362	Amp_3p25.1	0.829	1
ZNF362	Del_7p22.3	0.829	1
Amp_10p15.1	Del_9q21.11	0.829	1
Del_6q15	Del_12q24.31	0.829	1
FGFR2	Del_22q13.32	0.83	1
GPRIN2	Del_22q13.32	0.83	1
HRNR	MLL3	0.83	1
NCOR1	RB1	0.83	1
RUFY1	Del_9p23	0.83	1
TGS1	Amp_1q21.3	0.83	1
20p-Amp	Del_12q23.1	0.83	1
22q-Del	5q-Del	0.83	1
Amp_6q21	Del_18q23	0.83	1
Amp_19q13.42	Del_11q23.3	0.83	1
Del_11q13.1	Del_12q23.1	0.83	1
ACTL6B	Amp_8p11.23	0.831	1
APC	7p-Amp	0.831	1
CBFB	USP36	0.831	1
CBFB	ZFP36L1	0.831	1
CDC42EP1	PTEN	0.831	1
CDC42EP1	Del_1p36.13	0.831	1
CTCF	FGFR2	0.831	1
CTCF	GPRIN2	0.831	1
CTCF	IRS4	0.831	1
CTCF	NLGN3	0.831	1
FBXW7	Amp_20q13.2	0.831	1
FGFR2	MYH9	0.831	1
FGFR2	SF3B1	0.831	1
GPRIN2	MYH9	0.831	1
GPRIN2	SF3B1	0.831	1
GPS2	Amp_8p11.23	0.831	1
IRS4	SF3B1	0.831	1
MAP3K1	8q-Amp	0.831	1
NBPF9	PTEN	0.831	1
NLGN3	SF3B1	0.831	1
SMAD4	Del_5q11.2	0.831	1
TBX3	11p-Del	0.831	1
ZFP36L2	Del_5q11.2	0.831	1
15q-Del	Amp_3p25.1	0.831	1
15q-Del	Amp_11p13	0.831	1
1q-Del	Amp_8p11.23	0.831	1
Amp_11p13	Amp_14q21.1	0.831	1
ARID1A	Amp_13q34	0.832	1
C17orf95	TP53	0.832	1
CDH1	Del_12q23.1	0.832	1
FRMPD2	20q-Amp	0.832	1
NBPF9	TP53	0.832	1
NF1	1p-Del	0.832	1
NF1	Amp_14q21.1	0.832	1
RBMX	20q-Amp	0.832	1
16p-Amp	Del_11q23.3	0.832	1
7p-Amp	Del_8p23.2	0.832	1
13q-Del	Amp_1q44	0.832	1
Amp_3p25.1	Del_22q13.32	0.832	1
Amp_4q13.3	Del_13q14.2	0.832	1
Amp_14q21.1	Del_5q21.3	0.832	1
Amp_19p13.12	Del_7q36.1	0.832	1
Del_5q21.3	Del_11q13.1	0.832	1
CASZ1	5p-Amp	0.833	1
ERBB2	1q-Amp	0.833	1
FGFR2	15q-Del	0.833	1
GPRIN2	9q-Del	0.833	1
IRS4	Del_20p13	0.833	1
MED23	1p-Del	0.833	1
MED23	Amp_14q21.1	0.833	1
MUC6	1p-Del	0.833	1
NLGN3	15q-Del	0.833	1
PIK3R1	Amp_14q21.1	0.833	1
SMAD2	Del_1p22.1	0.833	1
TAF1L	Amp_19p13.12	0.833	1
VCPIP1	Del_6q15	0.833	1
17q-Amp	Del_12p13.1	0.833	1
9q-Del	Del_7q36.1	0.833	1
GATA3	7q-Amp	0.834	1
HRNR	6q-Del	0.834	1
IRS4	Amp_20q13.2	0.834	1
KDM6A	6q-Del	0.834	1
20p-Amp	Del_7q36.1	0.834	1
Amp_12q15	Del_11q13.1	0.834	1
ERBB2	KCNN3	0.835	1
ERBB2	VCPIP1	0.835	1
KCNN3	RB1	0.835	1
MLL3	Del_18q23	0.835	1
NLGN3	Del_18q23	0.835	1
RB1	TBL1XR1	0.835	1
RB1	VCPIP1	0.835	1
20q-Amp	Del_4p16.3	0.835	1
20q-Amp	Del_5q11.2	0.835	1
5p-Amp	Del_15q13.1	0.835	1
14q-Del	Amp_1q44	0.835	1
4q-Del	Amp_10q22.3	0.835	1
Amp_11q14.1	Del_5q11.2	0.835	1
ACTL6B	TAF1L	0.836	1
CDKN1B	TAF1L	0.836	1
CDKN1B	4q-Del	0.836	1
EYS	9q-Del	0.836	1
GPS2	MAP3K1	0.836	1
HRNR	17p-Del	0.836	1
HRNR	Del_7p22.3	0.836	1
IL1RAP	Del_2q37.3	0.836	1
MAP3K1	PTPN22	0.836	1
MAP3K1	1q-Del	0.836	1
NCDN	22q-Del	0.836	1
NCDN	Amp_19p13.12	0.836	1
PAX2	Amp_19p13.12	0.836	1
PTPN22	TAF1L	0.836	1
RAB42	Amp_19p13.12	0.836	1
TAF1L	1q-Del	0.836	1
TGS1	Del_11p15.5	0.836	1
TGS1	Del_14q24.1	0.836	1
TPP2	20p-Amp	0.836	1
TPP2	Del_11q13.1	0.836	1
USP36	20p-Amp	0.836	1
VCPIP1	Del_2q37.3	0.836	1
ZBTB7C	Amp_19p13.12	0.836	1
ZFP36L1	Del_11q13.1	0.836	1
ZNF362	Amp_19p13.12	0.836	1
20p-Amp	Del_17q21.31	0.836	1
18p-Del	Del_12p13.1	0.836	1
Amp_12q15	Amp_17q12	0.836	1
AQP12A	RUNX1	0.837	1
ARID1A	TBX3	0.837	1
CDC42EP1	Del_17p12	0.837	1
ICOSLG	RUNX1	0.837	1
KRAS	RUNX1	0.837	1
NBPF9	Del_17p12	0.837	1
RUNX1	SP3	0.837	1
SF3B1	Amp_3p25.1	0.837	1
7p-Amp	Del_11q23.3	0.837	1
4p-Del	Del_16q24.3	0.837	1
Amp_11q13.3	Del_10q23.31	0.837	1
APC	Amp_17q23.1	0.838	1
C17orf95	Del_3p21.31	0.838	1
EYS	ZFP36L1	0.838	1
GPRIN2	Del_17q21.31	0.838	1
IRS4	Del_17q21.31	0.838	1
MED23	MYB	0.838	1
MED23	TGS1	0.838	1
MED23	16q-Del	0.838	1
MED23	Del_12q23.1	0.838	1
MUC6	MYB	0.838	1
MUC6	16q-Del	0.838	1
MYB	PIK3R1	0.838	1
NBPF9	Del_9p21.3	0.838	1
PIK3CA	TFE3	0.838	1
PIK3R1	TGS1	0.838	1
PIK3R1	Amp_1q21.3	0.838	1
PIK3R1	Del_12q23.1	0.838	1
VCPIP1	Del_8p23.2	0.838	1
7q-Amp	17q-Del	0.838	1
IL1RAP	11p-Del	0.839	1
IRS4	8p-Del	0.839	1
NCDN	Amp_17q23.1	0.839	1
PTPN22	Del_9q21.11	0.839	1
RBMX	Del_13q14.2	0.839	1
SMAD4	Amp_3q26.32	0.839	1
SPEN	7p-Amp	0.839	1
TBL1XR1	11p-Del	0.839	1
VCPIP1	Del_9q34.2	0.839	1
ZBTB7C	Amp_17q23.1	0.839	1
8q-Amp	Del_16q24.3	0.839	1
1q-Del	Del_9q21.11	0.839	1
NLGN3	16q-Del	0.84	1
Amp_8q24.21	Del_7q36.1	0.84	1
Amp_11q13.3	Del_12q23.1	0.84	1
Amp_14q21.1	Del_6q27	0.84	1
CDH1	Del_11q13.1	0.841	1
ERBB2	MAP3K1	0.841	1
FBXW7	NLGN3	0.841	1
FGFR2	KDM6A	0.841	1
FOXA1	SPEN	0.841	1
FOXA1	8p-Del	0.841	1
GPRIN2	KDM6A	0.841	1
GPRIN2	ZMYM3	0.841	1
SMAD4	Amp_1p22.3	0.841	1
TFE3	Amp_1p22.3	0.841	1
TPP2	Del_11q23.3	0.841	1
ZFP36L2	Amp_1p22.3	0.841	1
5p-Amp	15q-Del	0.841	1
5p-Amp	9q-Del	0.841	1
Amp_11p13	Del_12q23.1	0.841	1
Amp_11p13	Del_12q24.31	0.841	1
AQP12A	Del_19p13.3	0.842	1
ICOSLG	Del_19p13.3	0.842	1
TPP2	Del_5q21.3	0.842	1
ZFP36L1	Del_5q21.3	0.842	1
ZMYM3	Del_19q13.32	0.842	1
5p-Amp	8p-Amp	0.842	1
Amp_14q21.1	Del_9q21.11	0.842	1
ACTL6B	Del_21q11.2	0.843	1
AQP12A	NF1	0.843	1
AQP12A	TBX3	0.843	1
ARID1A	16p-Amp	0.843	1
CASZ1	Amp_13q34	0.843	1
CDKN1B	17q-Del	0.843	1
CDKN1B	Amp_19q12	0.843	1
GPS2	Del_21q11.2	0.843	1
ICOSLG	NF1	0.843	1
ICOSLG	TBX3	0.843	1
PTPN22	17q-Del	0.843	1
PTPN22	Del_21q11.2	0.843	1
RBMX	Del_5q11.2	0.843	1
SP3	TBX3	0.843	1
TBX3	TCP11	0.843	1
C17orf95	MAP2K4	0.844	1
CBFB	HRNR	0.844	1
CDC42EP1	MAP2K4	0.844	1
ERBB2	16p-Del	0.844	1
FOXA1	SMAD2	0.844	1
FOXA1	TFE3	0.844	1
FOXA1	ZFP36L2	0.844	1
ICOSLG	8q-Amp	0.844	1
MAP2K4	NBPF9	0.844	1
NCDN	Amp_10q22.3	0.844	1
PAX2	Amp_10q22.3	0.844	1
PIK3R1	9p-Del	0.844	1
RAB42	Amp_10q22.3	0.844	1
SPEN	Amp_12q15	0.844	1
TCP11	8q-Amp	0.844	1
TFE3	Amp_10p15.1	0.844	1
ZBTB7C	Amp_10q22.3	0.844	1
ZFP36L2	Amp_10p15.1	0.844	1
ZNF362	Amp_10q22.3	0.844	1
ACTL6B	APC	0.845	1
ACTL6B	CTCF	0.845	1
ACTL6B	MYH9	0.845	1
ACTL6B	SF3B1	0.845	1
APC	CDKN1B	0.845	1
APC	1q-Del	0.845	1
CDKN1B	MYH9	0.845	1
CDKN1B	SF3B1	0.845	1
CTCF	GPS2	0.845	1
FOXA1	20p-Amp	0.845	1
GPS2	MYH9	0.845	1
GPS2	SF3B1	0.845	1
HRNR	Del_11p15.5	0.845	1
IL1RAP	Del_6q27	0.845	1
MYH9	1q-Del	0.845	1
RB1	16p-Amp	0.845	1
SF3B1	1q-Del	0.845	1
SMAD4	Del_22q13.32	0.845	1
SPEN	18q-Del	0.845	1
TBL1XR1	Del_6q27	0.845	1
TFE3	Amp_8p11.21	0.845	1
8p-Amp	Del_17p12	0.845	1
1p-Del	Amp_3q26.32	0.845	1
AQP12A	Del_14q24.1	0.846	1
CASZ1	Del_1p22.1	0.846	1
ERBB2	Del_9q21.11	0.846	1
FBXW7	20p-Amp	0.846	1
GATA3	Del_17q21.31	0.846	1
KDM6A	20p-Amp	0.846	1
RB1	Del_9q21.11	0.846	1
RUFY1	Del_11p15.5	0.846	1
RUFY1	Del_14q24.1	0.846	1
SP3	Del_11p15.5	0.846	1
16p-Amp	18p-Del	0.846	1
16q-Del	9q-Del	0.846	1
6q-Del	Amp_11q13.3	0.846	1
Amp_3p25.1	Del_19p13.3	0.846	1
ACTL6B	Del_7q36.1	0.847	1
NCDN	17q-Amp	0.847	1
NCDN	Amp_4q13.3	0.847	1
PAX2	17q-Amp	0.847	1
PAX2	Amp_4q13.3	0.847	1
RAB42	17q-Amp	0.847	1
RAB42	Amp_4q13.3	0.847	1
ZBTB7C	17q-Amp	0.847	1
ZBTB7C	Amp_4q13.3	0.847	1
ZMYM3	7p-Amp	0.847	1
ZNF362	17q-Amp	0.847	1
ZNF362	Amp_4q13.3	0.847	1
7q-Amp	Amp_3p25.1	0.847	1
7q-Amp	Del_7p22.3	0.847	1
Amp_1p22.3	Del_4q35.1	0.847	1
Amp_14q21.1	Del_11q23.3	0.847	1
AQP12A	ARID1A	0.848	1
ARID1A	ICOSLG	0.848	1
ARID1A	KRAS	0.848	1
ARID1A	11p-Del	0.848	1
EYS	MAP2K4	0.848	1
MED23	4p-Del	0.848	1
MUC6	4p-Del	0.848	1
MYH9	Amp_19p13.12	0.848	1
USP36	16q-Del	0.848	1
USP36	Amp_6p23	0.848	1
ZFP36L2	Amp_20q13.2	0.848	1
7p-Amp	9p-Del	0.848	1
Amp_19p13.12	Del_1p22.1	0.848	1
Del_2q37.3	Del_6p25.3	0.848	1
ARID1A	16q-Del	0.849	1
ARID1A	Amp_8q24.21	0.849	1
CASZ1	MYB	0.849	1
ERBB2	Amp_11q14.1	0.849	1
FRMPD2	MYB	0.849	1
FRMPD2	TGS1	0.849	1
IL1RAP	Del_6p25.3	0.849	1
MAP3K1	Amp_8p11.23	0.849	1
MYB	RBMX	0.849	1
MYB	Amp_11p13	0.849	1
RB1	8q-Amp	0.849	1
RBMX	TGS1	0.849	1
SMAD2	Del_10q23.31	0.849	1
TBL1XR1	Del_6p25.3	0.849	1
TFE3	Del_10q23.31	0.849	1
ZFP36L2	Del_10q23.31	0.849	1
16p-Del	Amp_11p13	0.849	1
17q-Del	Amp_14q21.1	0.849	1
Amp_12p13.33	Del_12p13.1	0.849	1
CBFB	SMAD2	0.85	1
CBFB	ZFP36L2	0.85	1
ERBB2	14q-Del	0.85	1
FGFR2	MED23	0.85	1
FGFR2	MUC6	0.85	1
GPRIN2	MED23	0.85	1
GPRIN2	PIK3R1	0.85	1
IRS4	MED23	0.85	1
IRS4	MUC6	0.85	1
MUC6	NLGN3	0.85	1
NLGN3	PIK3R1	0.85	1
RB1	17q-Del	0.85	1
1q-Amp	20p-Amp	0.85	1
20p-Amp	Del_5q11.2	0.85	1
8q-Amp	Amp_6q21	0.85	1
22q-Del	Amp_12p13.33	0.85	1
Amp_6q21	Del_12q23.1	0.85	1
Amp_12q15	Del_6p25.3	0.85	1
Amp_19p13.12	Del_9p23	0.85	1
Del_4p16.3	Del_11q13.1	0.85	1
Del_5q21.3	Del_7q36.1	0.85	1
ERBB2	PTEN	0.851	1
EYS	9p-Del	0.851	1
KCNN3	TAF1L	0.851	1
NCOR1	PAX2	0.851	1
NCOR1	RAB42	0.851	1
NCOR1	ZBTB7C	0.851	1
NCOR1	ZNF362	0.851	1
PTEN	RB1	0.851	1
TAF1L	TBL1XR1	0.851	1
TGS1	Del_4q35.1	0.851	1
TP53	9q-Del	0.851	1
11p-Del	Amp_19q13.42	0.851	1
1p-Del	Amp_1p22.3	0.851	1
Amp_10p15.1	Amp_12q15	0.851	1
ARID1A	Del_12q24.31	0.852	1
CBFB	SPEN	0.852	1
ERBB2	USP36	0.852	1
ERBB2	ZFP36L1	0.852	1
RB1	USP36	0.852	1
RB1	ZFP36L1	0.852	1
RBMX	1p-Del	0.852	1
RBMX	Amp_3q26.32	0.852	1
RBMX	Amp_14q21.1	0.852	1
SMAD2	Del_10q26.3	0.852	1
SMAD4	Del_10q26.3	0.852	1
TAF1L	17q-Amp	0.852	1
TAF1L	Amp_4q13.3	0.852	1
TFE3	9p-Del	0.852	1
TFE3	Del_10q26.3	0.852	1
ZFP36L2	8p-Del	0.852	1
ZFP36L2	9p-Del	0.852	1
9p-Del	Amp_12p13.33	0.852	1
Amp_10q22.3	Del_12q24.31	0.852	1
Del_9q21.11	Del_12q23.1	0.852	1
C17orf95	7q-Amp	0.853	1
CDC42EP1	7q-Amp	0.853	1
CTCF	17p-Del	0.853	1
KDM6A	Amp_3p25.1	0.853	1
KDM6A	Del_5q21.3	0.853	1
MYH9	Del_8p23.2	0.853	1
NBPF9	SPEN	0.853	1
NBPF9	7q-Amp	0.853	1
NCOR1	Del_11q23.3	0.853	1
SF3B1	Del_8p23.2	0.853	1
TGS1	Amp_6q21	0.853	1
17q-Amp	Del_9q21.11	0.853	1
18q-Del	8p-Del	0.853	1
5q-Del	Del_6p25.3	0.853	1
Amp_8p11.21	Amp_17q12	0.853	1
ACTL6B	FBXW7	0.854	1
ACTL6B	KDM6A	0.854	1
CDKN1B	FBXW7	0.854	1
CDKN1B	ZMYM3	0.854	1
FBXW7	GPS2	0.854	1
FBXW7	PTPN22	0.854	1
FBXW7	1q-Del	0.854	1
GATA3	TFE3	0.854	1
GATA3	ZFP36L2	0.854	1
GATA3	7p-Amp	0.854	1
GPS2	KDM6A	0.854	1
GPS2	ZMYM3	0.854	1
KDM6A	1q-Del	0.854	1
NCDN	Del_16q24.3	0.854	1
PAX2	Del_16q24.3	0.854	1
PTEN	Del_9q34.2	0.854	1
PTPN22	ZMYM3	0.854	1
SMAD2	4p-Del	0.854	1
SMAD4	4p-Del	0.854	1
TBL1XR1	Del_1p36.13	0.854	1
TFE3	4p-Del	0.854	1
ZBTB7C	Del_16q24.3	0.854	1
ZMYM3	1q-Del	0.854	1
ZMYM3	Del_16q24.3	0.854	1
20p-Amp	18p-Del	0.854	1
20q-Amp	Amp_6q21	0.854	1
7p-Amp	4p-Del	0.854	1
1q-Del	Amp_11q13.3	0.854	1
Del_2q37.3	Del_8p23.2	0.854	1
ERBB2	Amp_12q15	0.855	1
ERBB2	Del_7q36.1	0.855	1
PIK3R1	18q-Del	0.855	1
20p-Amp	11q-Del	0.855	1
8q-Amp	1p-Del	0.855	1
14q-Del	Amp_6p23	0.855	1
5q-Del	Del_1p22.1	0.855	1
Amp_1q21.3	Amp_10q22.3	0.855	1
Amp_3p25.1	Del_10q23.31	0.855	1
Amp_6p23	Del_21q11.2	0.855	1
Amp_19q12	Del_10q23.31	0.855	1
Del_1p22.1	Del_20p13	0.855	1
ARID1A	CDH1	0.856	1
ICOSLG	17p-Del	0.856	1
KRAS	17p-Del	0.856	1
MAP2K4	Amp_6p23	0.856	1
RBMX	Amp_1p22.3	0.856	1
20q-Amp	Del_9q34.2	0.856	1
Amp_1q21.3	Amp_11q13.3	0.856	1
Del_6q27	Del_12q23.1	0.856	1
APC	Del_17q21.31	0.857	1
AQP12A	Del_4q35.1	0.857	1
CASZ1	Del_12q23.1	0.857	1
CASZ1	Del_12q24.31	0.857	1
CBFB	Del_22q13.32	0.857	1
EYS	TFE3	0.857	1
EYS	ZFP36L2	0.857	1
EYS	Amp_15q26.3	0.857	1
FRMPD2	Del_12q23.1	0.857	1
ICOSLG	Del_4q35.1	0.857	1
ICOSLG	Del_15q13.1	0.857	1
MAP3K1	8p-Amp	0.857	1
PTEN	Del_9p23	0.857	1
RBMX	Del_12q24.31	0.857	1
RUFY1	Del_15q13.1	0.857	1
SF3B1	Del_17q21.31	0.857	1
TCP11	Del_15q13.1	0.857	1
7p-Amp	Amp_11q13.3	0.857	1
8p-Amp	Del_16q24.3	0.857	1
Amp_15q26.3	Del_6q27	0.857	1
GPS2	Del_20p13	0.858	1
NCDN	16p-Del	0.858	1
PAX2	16p-Del	0.858	1
PTPN22	9q-Del	0.858	1
RAB42	16p-Del	0.858	1
ZBTB7C	16p-Del	0.858	1
ZNF362	16p-Del	0.858	1
8q-Amp	Del_10q26.3	0.858	1
16q-Del	4q-Del	0.858	1
APC	KCNN3	0.859	1
APC	TBL1XR1	0.859	1
CTCF	IL1RAP	0.859	1
CTCF	KCNN3	0.859	1
CTCF	TBL1XR1	0.859	1
CTCF	VCPIP1	0.859	1
FRMPD2	Amp_10p15.1	0.859	1
ICOSLG	Del_13q14.2	0.859	1
IL1RAP	SF3B1	0.859	1
KCNN3	MYH9	0.859	1
KCNN3	SF3B1	0.859	1
MUC6	Del_9p21.3	0.859	1
MYH9	VCPIP1	0.859	1
PIK3R1	Del_3p21.31	0.859	1
PIK3R1	Del_9p21.3	0.859	1
PIK3R1	Del_19q13.32	0.859	1
RUFY1	Del_13q14.2	0.859	1
SF3B1	TBL1XR1	0.859	1
SF3B1	VCPIP1	0.859	1
TPP2	Amp_17q12	0.859	1
16p-Del	Del_6p25.3	0.859	1
18q-Del	Amp_1q44	0.859	1
Amp_8p11.21	Del_12p13.1	0.859	1
Amp_12q15	Del_15q13.1	0.859	1
CASZ1	IRS4	0.86	1
CASZ1	NLGN3	0.86	1
CTCF	Amp_10q22.3	0.86	1
EYS	18p-Del	0.86	1
GATA3	Del_8p23.2	0.86	1
GPRIN2	RBMX	0.86	1
MYB	TGS1	0.86	1
NLGN3	RBMX	0.86	1
RB1	Del_4p16.3	0.86	1
TGS1	20q-Amp	0.86	1
17q-Amp	Del_21q11.2	0.86	1
7q-Amp	Amp_8q24.21	0.86	1
9q-Del	Amp_13q34	0.86	1
Amp_11p13	Amp_17q12	0.86	1
FOXA1	Amp_19q13.42	0.861	1
GPRIN2	Del_19p13.3	0.861	1
RUFY1	Del_16q24.3	0.861	1
8q-Amp	Del_11p15.5	0.861	1
11p-Del	Amp_6p23	0.861	1
Amp_4q13.3	Del_12q23.1	0.861	1
Amp_17q23.1	Del_9q21.11	0.861	1
AQP12A	16p-Amp	0.862	1
ERBB2	Del_3p21.31	0.862	1
ERBB2	Del_9p21.3	0.862	1
FBXW7	TP53	0.862	1
KCNN3	MAP3K1	0.862	1
MUC6	Amp_8p11.21	0.862	1
NCDN	PTEN	0.862	1
PIK3R1	11q-Del	0.862	1
PTEN	RAB42	0.862	1
PTEN	ZNF362	0.862	1
SP3	16p-Amp	0.862	1
TBL1XR1	4q-Del	0.862	1
TFE3	6q-Del	0.862	1
ZFP36L2	6q-Del	0.862	1
7q-Amp	Amp_19p13.12	0.862	1
11p-Del	Amp_3p25.1	0.862	1
Amp_1q21.3	Del_6q27	0.862	1
Amp_3p25.1	Del_9q34.2	0.862	1
Amp_15q26.3	Del_21q11.2	0.862	1
Amp_19q12	Del_10q26.3	0.862	1
ACTL6B	MED23	0.863	1
ACTL6B	PIK3R1	0.863	1
C17orf95	RUNX1	0.863	1
CBFB	8q-Amp	0.863	1
CDKN1B	MED23	0.863	1
CDKN1B	MUC6	0.863	1
CDKN1B	PIK3R1	0.863	1
EYS	7q-Amp	0.863	1
GPS2	MED23	0.863	1
GPS2	MUC6	0.863	1
GPS2	PIK3R1	0.863	1
MED23	PTPN22	0.863	1
MED23	1q-Del	0.863	1
NBPF9	RUNX1	0.863	1
NCDN	Amp_17q12	0.863	1
PAX2	Amp_17q12	0.863	1
PIK3R1	PTPN22	0.863	1
PIK3R1	1q-Del	0.863	1
TBL1XR1	Del_3p21.31	0.863	1
ZNF362	Amp_17q12	0.863	1
7q-Amp	Del_14q24.1	0.863	1
14q-Del	Amp_20q13.2	0.863	1
Amp_1p22.3	Del_12q24.31	0.863	1
Amp_11q13.3	Del_9q34.2	0.863	1
FBXW7	Amp_19p13.12	0.864	1
ICOSLG	20q-Amp	0.864	1
ICOSLG	Amp_11q14.1	0.864	1
PIK3R1	7p-Amp	0.864	1
RB1	Del_1p22.1	0.864	1
RUFY1	20q-Amp	0.864	1
RUFY1	Amp_11q14.1	0.864	1
SP3	20q-Amp	0.864	1
SP3	Amp_11q14.1	0.864	1
TCP11	20q-Amp	0.864	1
ZMYM3	Amp_19p13.12	0.864	1
8p-Amp	Del_2q37.3	0.864	1
15q-Del	Del_11q13.1	0.864	1
Amp_1p22.3	Amp_19p13.12	0.864	1
AQP12A	FOXA1	0.865	1
CASZ1	Del_10q23.31	0.865	1
ERBB2	11q-Del	0.865	1
FOXA1	KRAS	0.865	1
FOXA1	RUFY1	0.865	1
FOXA1	TCP11	0.865	1
KCNN3	Del_9q21.11	0.865	1
MAP3K1	Del_9q21.11	0.865	1
RBMX	Del_10q23.31	0.865	1
VCPIP1	Del_9q21.11	0.865	1
8p-Amp	Amp_13q34	0.865	1
18p-Del	Amp_13q34	0.865	1
Amp_6p23	Del_10q23.31	0.865	1
FGFR2	5q-Del	0.866	1
FOXA1	TBX3	0.866	1
IRS4	5q-Del	0.866	1
MYH9	17q-Amp	0.866	1
NCOR1	16q-Del	0.866	1
PTEN	Amp_6q21	0.866	1
16p-Amp	Amp_15q26.3	0.866	1
8q-Amp	17q-Del	0.866	1
15q-Del	8p-Del	0.866	1
Amp_1p22.3	Del_6q27	0.866	1
Amp_12q15	Del_12p13.1	0.866	1
Del_7q36.1	Del_12p13.1	0.866	1
CDC42EP1	NF1	0.867	1
CDC42EP1	16q-Del	0.867	1
NBPF9	TBX3	0.867	1
TAF1L	ZFP36L1	0.867	1
20p-Amp	Del_11q25	0.867	1
Amp_6p23	Amp_10q22.3	0.867	1
Amp_12q15	Del_22q13.32	0.867	1
Amp_19q13.42	Del_22q13.32	0.867	1
CASZ1	Del_10q26.3	0.868	1
CBFB	RUNX1	0.868	1
CDH1	KRAS	0.868	1
CDH1	SP3	0.868	1
CDH1	TCP11	0.868	1
FBXW7	TBL1XR1	0.868	1
FBXW7	VCPIP1	0.868	1
FGFR2	Amp_17q23.1	0.868	1
FRMPD2	9p-Del	0.868	1
GPS2	Del_18q23	0.868	1
IL1RAP	KDM6A	0.868	1
KCNN3	KDM6A	0.868	1
KCNN3	ZMYM3	0.868	1
KDM6A	TBL1XR1	0.868	1
MAP2K4	22q-Del	0.868	1
MED23	Del_11q13.1	0.868	1
PIK3R1	Del_11q13.1	0.868	1
RBMX	Del_10q26.3	0.868	1
RUFY1	Amp_8p11.23	0.868	1
RUNX1	Del_7p22.3	0.868	1
TAF1L	Del_12p13.1	0.868	1
TBL1XR1	ZMYM3	0.868	1
TPP2	11p-Del	0.868	1
TPP2	Del_9q34.2	0.868	1
USP36	11p-Del	0.868	1
USP36	Del_9q34.2	0.868	1
VCPIP1	ZMYM3	0.868	1
VCPIP1	Del_13q14.2	0.868	1
ZFP36L1	Del_9q34.2	0.868	1
20q-Amp	14q-Del	0.868	1
20q-Amp	Amp_4q13.3	0.868	1
15q-Del	Amp_3q26.32	0.868	1
18p-Del	Amp_8p11.23	0.868	1
Amp_11q14.1	Amp_19q12	0.868	1
CTCF	Del_11q23.3	0.869	1
ERBB2	SMAD4	0.869	1
ERBB2	ZFP36L2	0.869	1
ERBB2	17p-Del	0.869	1
KDM6A	Amp_17q23.1	0.869	1
MAP3K1	NF1	0.869	1
MED23	Amp_3p25.1	0.869	1
MUC6	Del_7p22.3	0.869	1
RB1	SMAD4	0.869	1
RB1	TFE3	0.869	1
RB1	17p-Del	0.869	1
RB1	22q-Del	0.869	1
RB1	9q-Del	0.869	1
SMAD2	TP53	0.869	1
SMAD4	20p-Amp	0.869	1
TBL1XR1	14q-Del	0.869	1
TFE3	TP53	0.869	1
VCPIP1	17q-Del	0.869	1
8p-Del	Amp_11p13	0.869	1
Amp_11p13	Del_1p36.13	0.869	1
Amp_11q13.3	Del_20p13	0.869	1
Amp_20q13.2	Del_12p13.1	0.869	1
AQP12A	CBFB	0.87	1
AQP12A	Del_4p16.3	0.87	1
C17orf95	Del_18q23	0.87	1
CBFB	ICOSLG	0.87	1
CBFB	KRAS	0.87	1
CBFB	RUFY1	0.87	1
CBFB	SP3	0.87	1
CBFB	TCP11	0.87	1
CDC42EP1	Del_18q23	0.87	1
NBPF9	Del_18q23	0.87	1
RUFY1	Del_5q11.2	0.87	1
TAF1L	16p-Del	0.87	1
20p-Amp	6q-Del	0.87	1
Amp_8p11.23	Del_19q13.32	0.87	1
Amp_10q22.3	Del_4p16.3	0.87	1
FGFR2	MYB	0.871	1
FGFR2	TGS1	0.871	1
GPRIN2	MYB	0.871	1
GPRIN2	TGS1	0.871	1
GPS2	Del_17q21.31	0.871	1
IRS4	MYB	0.871	1
IRS4	TGS1	0.871	1
MYB	NLGN3	0.871	1
NCOR1	Del_12q24.31	0.871	1
NF1	Del_18q23	0.871	1
PAX2	13q-Del	0.871	1
RAB42	13q-Del	0.871	1
RUNX1	Amp_12q15	0.871	1
RUNX1	Del_7q36.1	0.871	1
SMAD4	22q-Del	0.871	1
TFE3	22q-Del	0.871	1
USP36	Del_16q24.3	0.871	1
ZNF362	13q-Del	0.871	1
14q-Del	Amp_8q24.21	0.871	1
Amp_8p11.21	Amp_19p13.12	0.871	1
ACTL6B	CASZ1	0.872	1
ACTL6B	FRMPD2	0.872	1
ACTL6B	RBMX	0.872	1
AQP12A	Del_1p22.1	0.872	1
ARID1A	NBPF9	0.872	1
CASZ1	CDKN1B	0.872	1
CASZ1	1q-Del	0.872	1
CDC42EP1	Del_17q21.31	0.872	1
FRMPD2	GPS2	0.872	1
FRMPD2	PTPN22	0.872	1
FRMPD2	1q-Del	0.872	1
GPS2	RBMX	0.872	1
GPS2	Amp_8p11.21	0.872	1
GPS2	Amp_15q26.3	0.872	1
ICOSLG	Del_1p22.1	0.872	1
IL1RAP	Amp_12q15	0.872	1
NBPF9	Del_17q21.31	0.872	1
PTPN22	RBMX	0.872	1
PTPN22	Amp_15q26.3	0.872	1
RUFY1	Del_1p22.1	0.872	1
SP3	Del_1p22.1	0.872	1
TBL1XR1	Del_7q36.1	0.872	1
VCPIP1	Amp_12q15	0.872	1
Amp_12q15	Del_10q26.3	0.872	1
Amp_19q12	Del_3p21.31	0.872	1
ARID1A	Amp_3q26.32	0.873	1
FGFR2	Amp_6q21	0.873	1
IRS4	Amp_19q13.42	0.873	1
MAP2K4	NCDN	0.873	1
MAP2K4	PAX2	0.873	1
MAP2K4	RAB42	0.873	1
MAP2K4	ZBTB7C	0.873	1
NF1	Del_10q23.31	0.873	1
SPEN	Amp_1q44	0.873	1
5p-Amp	Amp_15q26.3	0.873	1
5p-Amp	Amp_17q23.1	0.873	1
Amp_17q23.1	Amp_19q13.42	0.873	1
APC	ZFP36L1	0.874	1
CASZ1	8p-Amp	0.874	1
CTCF	USP36	0.874	1
CTCF	ZFP36L1	0.874	1
MYH9	TPP2	0.874	1
MYH9	ZFP36L1	0.874	1
RB1	Amp_17q23.1	0.874	1
RB1	Del_13q14.2	0.874	1
RBMX	8p-Amp	0.874	1
RBMX	Amp_8q24.21	0.874	1
SF3B1	TPP2	0.874	1
SF3B1	USP36	0.874	1
SF3B1	ZFP36L1	0.874	1
SMAD2	Amp_17q23.1	0.874	1
SMAD4	Del_5q21.3	0.874	1
TBX3	Del_9q21.11	0.874	1
TFE3	Amp_17q23.1	0.874	1
ZFP36L2	Del_5q21.3	0.874	1
ZMYM3	Amp_10q22.3	0.874	1
7q-Amp	8p-Del	0.874	1
8q-Amp	Del_12q23.1	0.874	1
8q-Amp	Del_12q24.31	0.874	1
Amp_10q22.3	Amp_17q12	0.874	1
Amp_11p13	Del_13q14.2	0.874	1
Amp_17q12	Del_6q15	0.874	1
PAX2	Del_6q15	0.875	1
SMAD4	Del_17p12	0.875	1
TFE3	Del_17p12	0.875	1
ZFP36L1	Del_6q15	0.875	1
ZFP36L2	Del_17p12	0.875	1
16p-Amp	Amp_1q21.3	0.875	1
5p-Amp	Amp_17q12	0.875	1
8q-Amp	Del_15q13.1	0.875	1
Amp_10q22.3	Del_9p21.3	0.875	1
Amp_14q21.1	Del_10q26.3	0.875	1
AQP12A	EYS	0.876	1
EYS	ICOSLG	0.876	1
EYS	TCP11	0.876	1
FBXW7	Amp_8q24.21	0.876	1
FOXA1	Del_1p36.13	0.876	1
IL1RAP	MED23	0.876	1
IL1RAP	MUC6	0.876	1
KCNN3	MED23	0.876	1
KCNN3	MUC6	0.876	1
KCNN3	PIK3R1	0.876	1
MED23	TBL1XR1	0.876	1
MED23	VCPIP1	0.876	1
MUC6	TBL1XR1	0.876	1
MUC6	VCPIP1	0.876	1
PIK3R1	VCPIP1	0.876	1
16q-Del	Del_4q35.1	0.876	1
16q-Del	Del_15q13.1	0.876	1
18p-Del	Del_21q11.2	0.876	1
Amp_10p15.1	Del_6q27	0.876	1
Del_11q13.1	Del_15q13.1	0.876	1
AQP12A	Amp_3q26.32	0.877	1
CASZ1	Amp_11q13.3	0.877	1
ERBB2	16q-Del	0.877	1
FOXA1	Amp_8p11.23	0.877	1
HRNR	NCDN	0.877	1
HRNR	PAX2	0.877	1
HRNR	RAB42	0.877	1
HRNR	ZBTB7C	0.877	1
HRNR	ZNF362	0.877	1
MLL3	NCOR1	0.877	1
NBPF9	Del_9p23	0.877	1
RUFY1	Amp_3q26.32	0.877	1
TCP11	Amp_3q26.32	0.877	1
TGS1	TP53	0.877	1
1q-Amp	Amp_11q13.3	0.877	1
HRNR	RB1	0.878	1
KCNN3	Amp_8p11.23	0.878	1
NF1	9p-Del	0.878	1
RB1	Amp_10p15.1	0.878	1
VCPIP1	Amp_8p11.23	0.878	1
17p-Del	Amp_3p25.1	0.878	1
22q-Del	Del_7q36.1	0.878	1
Amp_14q21.1	Del_20p13	0.878	1
Amp_15q26.3	Del_1p36.13	0.878	1
EYS	20p-Amp	0.879	1
FGFR2	Del_15q13.1	0.879	1
KDM6A	Del_18q23	0.879	1
KRAS	Amp_1p22.3	0.879	1
NF1	17q-Del	0.879	1
PIK3R1	Amp_19p13.12	0.879	1
TCP11	Amp_1p22.3	0.879	1
ZFP36L2	Amp_6p23	0.879	1
ZMYM3	Del_18q23	0.879	1
7p-Amp	5q-Del	0.879	1
APC	Amp_17q12	0.88	1
KDM6A	17q-Amp	0.88	1
MYB	Amp_1p22.3	0.88	1
RBMX	7p-Amp	0.88	1
ZMYM3	1q-Amp	0.88	1
20p-Amp	Amp_8p11.21	0.88	1
16q-Del	Del_12p13.1	0.88	1
6q-Del	Del_11p15.5	0.88	1
Amp_1p22.3	Del_11q13.1	0.88	1
Amp_3p25.1	Amp_19p13.12	0.88	1
Amp_6p23	Del_11q23.3	0.88	1
Amp_14q21.1	Del_3p21.31	0.88	1
ACTL6B	Del_16q24.3	0.881	1
AQP12A	Amp_10p15.1	0.881	1
FGFR2	GPRIN2	0.881	1
FGFR2	IRS4	0.881	1
FGFR2	NLGN3	0.881	1
GPRIN2	IRS4	0.881	1
GPRIN2	NLGN3	0.881	1
GPRIN2	Amp_13q34	0.881	1
ICOSLG	Amp_10p15.1	0.881	1
IRS4	NLGN3	0.881	1
IRS4	Amp_13q34	0.881	1
KCNN3	9q-Del	0.881	1
NCDN	7q-Amp	0.881	1
PAX2	SPEN	0.881	1
PAX2	7q-Amp	0.881	1
PTPN22	Del_16q24.3	0.881	1
RAB42	SPEN	0.881	1
RUFY1	Amp_10p15.1	0.881	1
SMAD2	1q-Amp	0.881	1
SPEN	ZNF362	0.881	1
TBL1XR1	Del_20p13	0.881	1
TCP11	Amp_10p15.1	0.881	1
TFE3	1q-Amp	0.881	1
ZBTB7C	7q-Amp	0.881	1
4q-Del	Amp_12q15	0.881	1
9p-Del	Amp_17q12	0.881	1
ACTL6B	MYB	0.882	1
ACTL6B	TGS1	0.882	1
ACTL6B	Del_11q23.3	0.882	1
ARID1A	MAP3K1	0.882	1
CDKN1B	MYB	0.882	1
ERBB2	Del_16q24.3	0.882	1
EYS	Amp_11p13	0.882	1
FBXW7	USP36	0.882	1
FBXW7	ZFP36L1	0.882	1
FBXW7	Del_2q37.3	0.882	1
GATA3	TBX3	0.882	1
GPS2	TGS1	0.882	1
GPS2	Del_11q23.3	0.882	1
KDM6A	TPP2	0.882	1
KDM6A	Del_2q37.3	0.882	1
MYB	PTPN22	0.882	1
MYB	1q-Del	0.882	1
SMAD4	TAF1L	0.882	1
TGS1	1q-Del	0.882	1
USP36	Del_12p13.1	0.882	1
ZBTB7C	Del_6q27	0.882	1
ZFP36L1	ZMYM3	0.882	1
ZMYM3	Del_17q21.31	0.882	1
ZNF362	Del_6q27	0.882	1
APC	16p-Del	0.883	1
CTCF	16p-Del	0.883	1
HRNR	16q-Del	0.883	1
PTEN	8p-Amp	0.883	1
PTEN	18p-Del	0.883	1
TFE3	Amp_8q24.21	0.883	1
16p-Del	Amp_14q21.1	0.883	1
17p-Del	Amp_19q13.42	0.883	1
ARID1A	CBFB	0.884	1
CASZ1	KCNN3	0.884	1
CASZ1	TBL1XR1	0.884	1
FRMPD2	KCNN3	0.884	1
FRMPD2	TBL1XR1	0.884	1
FRMPD2	VCPIP1	0.884	1
FRMPD2	Del_7p22.3	0.884	1
GATA3	8p-Del	0.884	1
KCNN3	RBMX	0.884	1
RB1	SPEN	0.884	1
RBMX	TBL1XR1	0.884	1
RBMX	VCPIP1	0.884	1
SP3	Amp_11q13.3	0.884	1
TAF1L	17q-Del	0.884	1
TAF1L	Amp_19q12	0.884	1
TBL1XR1	Amp_1q44	0.884	1
TCP11	Amp_11q13.3	0.884	1
USP36	Del_6q27	0.884	1
VCPIP1	Amp_1q44	0.884	1
20q-Amp	Del_6p25.3	0.884	1
7p-Amp	Amp_11q14.1	0.884	1
11q-Del	Amp_14q21.1	0.884	1
Amp_1q44	Amp_6p23	0.884	1
MYH9	Del_12p13.1	0.885	1
SF3B1	Del_12p13.1	0.885	1
SP3	Del_10q23.31	0.885	1
8p-Amp	Amp_1q44	0.885	1
6q-Del	Amp_17q23.1	0.885	1
9p-Del	Amp_19p13.12	0.885	1
Amp_11q14.1	Del_17p12	0.885	1
CDC42EP1	FOXA1	0.886	1
FOXA1	NBPF9	0.886	1
IRS4	Amp_11q14.1	0.886	1
MAP3K1	Del_22q13.32	0.886	1
NBPF9	Del_19p13.3	0.886	1
RUNX1	Amp_1q21.3	0.886	1
8p-Amp	Amp_14q21.1	0.886	1
Amp_1p22.3	Del_16q24.3	0.886	1
Amp_6p23	Amp_20q13.2	0.886	1
Amp_6q21	Del_12p13.1	0.886	1
Amp_17q23.1	Del_18q23	0.886	1
AQP12A	ERBB2	0.887	1
AQP12A	RB1	0.887	1
C17orf95	Del_11q25	0.887	1
ERBB2	ICOSLG	0.887	1
ERBB2	SP3	0.887	1
ERBB2	TCP11	0.887	1
FRMPD2	Del_9p21.3	0.887	1
HRNR	TP53	0.887	1
HRNR	Del_6q15	0.887	1
ICOSLG	RB1	0.887	1
ICOSLG	9p-Del	0.887	1
NCDN	Del_1p36.13	0.887	1
NF1	Amp_17q23.1	0.887	1
PAX2	Del_1p36.13	0.887	1
RB1	SP3	0.887	1
RB1	TCP11	0.887	1
RUFY1	9p-Del	0.887	1
RUFY1	Del_10q26.3	0.887	1
ZMYM3	17p-Del	0.887	1
20p-Amp	Amp_10p15.1	0.887	1
8p-Amp	Amp_6p23	0.887	1
16q-Del	Del_9p21.3	0.887	1
17p-Del	Amp_3q26.32	0.887	1
9q-Del	Del_12q23.1	0.887	1
Amp_20q13.2	Del_12q23.1	0.887	1
APC	PTEN	0.888	1
ARID1A	Del_10q23.31	0.888	1
ARID1A	Del_18q23	0.888	1
ERBB2	9p-Del	0.888	1
MED23	Amp_10q22.3	0.888	1
MYH9	PIK3CA	0.888	1
PIK3CA	SF3B1	0.888	1
14q-Del	Amp_19q12	0.888	1
Amp_1q21.3	Del_1p36.13	0.888	1
Amp_12p13.33	Del_7q36.1	0.888	1
Amp_12p13.33	Del_11q25	0.888	1
Del_7q36.1	Del_9q21.11	0.888	1
ACTL6B	Del_19p13.3	0.889	1
APC	ZFP36L2	0.889	1
AQP12A	GATA3	0.889	1
AQP12A	4p-Del	0.889	1
ARID1A	Del_7p22.3	0.889	1
C17orf95	Del_14q24.1	0.889	1
CTCF	SMAD2	0.889	1
CTCF	SMAD4	0.889	1
CTCF	TFE3	0.889	1
CTCF	ZFP36L2	0.889	1
FGFR2	Amp_14q21.1	0.889	1
FRMPD2	20p-Amp	0.889	1
GATA3	TCP11	0.889	1
MED23	TPP2	0.889	1
MED23	USP36	0.889	1
MED23	ZFP36L1	0.889	1
MUC6	TPP2	0.889	1
MUC6	USP36	0.889	1
MUC6	ZFP36L1	0.889	1
MYH9	SMAD2	0.889	1
MYH9	TFE3	0.889	1
MYH9	ZFP36L2	0.889	1
NBPF9	Del_11p15.5	0.889	1
NBPF9	Del_14q24.1	0.889	1
NCDN	RUNX1	0.889	1
PAX2	RUNX1	0.889	1
PIK3R1	USP36	0.889	1
PIK3R1	ZFP36L1	0.889	1
RAB42	RUNX1	0.889	1
RUNX1	ZBTB7C	0.889	1
RUNX1	ZNF362	0.889	1
SF3B1	SMAD2	0.889	1
SF3B1	TFE3	0.889	1
SF3B1	ZFP36L2	0.889	1
SP3	4p-Del	0.889	1
SP3	Del_8p23.2	0.889	1
TCP11	4p-Del	0.889	1
TCP11	Del_8p23.2	0.889	1
16p-Del	Del_12q24.31	0.889	1
1q-Del	Amp_11p13	0.889	1
Amp_1q21.3	Del_12q23.1	0.889	1
Amp_8p11.21	Del_22q13.32	0.889	1
Del_15q13.1	Del_16q24.3	0.889	1
FGFR2	PIK3CA	0.89	1
NF1	18q-Del	0.89	1
NLGN3	PIK3CA	0.89	1
TPP2	Del_9q21.11	0.89	1
USP36	Amp_12p13.33	0.89	1
USP36	Del_9q21.11	0.89	1
Amp_1q44	Del_10q26.3	0.89	1
Amp_4q13.3	Del_9p21.3	0.89	1
Amp_6p23	Del_9p21.3	0.89	1
Amp_13q34	Del_6p25.3	0.89	1
ACTL6B	FGFR2	0.891	1
ACTL6B	GPRIN2	0.891	1
ACTL6B	NLGN3	0.891	1
ARID1A	Del_17q21.31	0.891	1
C17orf95	CBFB	0.891	1
CDH1	IRS4	0.891	1
CDKN1B	GPRIN2	0.891	1
FGFR2	GPS2	0.891	1
FGFR2	PTPN22	0.891	1
FGFR2	1q-Del	0.891	1
GPRIN2	PTPN22	0.891	1
GPRIN2	1q-Del	0.891	1
GPS2	IRS4	0.891	1
GPS2	NLGN3	0.891	1
ICOSLG	18p-Del	0.891	1
IRS4	1q-Del	0.891	1
NLGN3	1q-Del	0.891	1
RUFY1	8p-Amp	0.891	1
SPEN	16p-Amp	0.891	1
TCP11	18p-Del	0.891	1
TGS1	Del_10q26.3	0.891	1
TGS1	Del_16q24.3	0.891	1
TP53	9p-Del	0.891	1
7p-Amp	Del_22q13.32	0.891	1
4q-Del	Del_11q13.1	0.891	1
Amp_6p23	Del_17p12	0.891	1
Amp_15q26.3	Del_20p13	0.891	1
Amp_20q13.2	Del_17q21.31	0.891	1
Del_6p25.3	Del_19p13.3	0.891	1
Del_9q21.11	Del_19q13.32	0.891	1
EYS	PIK3CA	0.892	1
FGFR2	Del_12q23.1	0.892	1
FGFR2	Del_12q24.31	0.892	1
FOXA1	11p-Del	0.892	1
GPRIN2	Del_12q24.31	0.892	1
NCDN	NF1	0.892	1
NCDN	TBX3	0.892	1
NF1	PAX2	0.892	1
NF1	RAB42	0.892	1
NF1	ZNF362	0.892	1
NLGN3	Del_12q24.31	0.892	1
PTEN	4q-Del	0.892	1
RAB42	TBX3	0.892	1
TBX3	ZBTB7C	0.892	1
TBX3	ZNF362	0.892	1
TP53	Amp_14q21.1	0.892	1
11q-Del	Amp_1q21.3	0.892	1
16p-Del	Del_21q11.2	0.892	1
17p-Del	Amp_6p23	0.892	1
17p-Del	Amp_8p11.23	0.892	1
22q-Del	Amp_3p25.1	0.892	1
22q-Del	Del_7p22.3	0.892	1
Amp_8p11.23	Del_17p12	0.892	1
Amp_19q12	Del_14q24.1	0.892	1
ACTL6B	5p-Amp	0.893	1
ACTL6B	Amp_6q21	0.893	1
FGFR2	Amp_1q21.3	0.893	1
GPS2	Amp_6q21	0.893	1
ICOSLG	18q-Del	0.893	1
IL1RAP	MYB	0.893	1
IL1RAP	TGS1	0.893	1
KCNN3	MYB	0.893	1
KCNN3	TGS1	0.893	1
KCNN3	Amp_15q26.3	0.893	1
MUC6	17q-Amp	0.893	1
MYB	VCPIP1	0.893	1
NCDN	Del_3p21.31	0.893	1
NCDN	Del_9p21.3	0.893	1
NCOR1	Amp_1q44	0.893	1
PIK3R1	Amp_4q13.3	0.893	1
SMAD4	Del_2q37.3	0.893	1
TBL1XR1	TGS1	0.893	1
TCP11	18q-Del	0.893	1
TFE3	Del_2q37.3	0.893	1
TPP2	Amp_19q12	0.893	1
USP36	Amp_19q12	0.893	1
ZFP36L1	17q-Del	0.893	1
ZFP36L2	Del_2q37.3	0.893	1
ZNF362	Del_9p21.3	0.893	1
5p-Amp	7p-Amp	0.893	1
7p-Amp	Amp_6q21	0.893	1
8p-Amp	18q-Del	0.893	1
1q-Del	Amp_6q21	0.893	1
CASZ1	Del_22q13.32	0.894	1
CBFB	1p-Del	0.894	1
CBFB	Amp_14q21.1	0.894	1
FGFR2	Del_5q11.2	0.894	1
NCOR1	15q-Del	0.894	1
PAX2	11q-Del	0.894	1
PTPN22	Del_11p15.5	0.894	1
PTPN22	Del_14q24.1	0.894	1
RAB42	11q-Del	0.894	1
RBMX	Amp_8p11.21	0.894	1
17q-Amp	11q-Del	0.894	1
17q-Amp	Del_11q25	0.894	1
7p-Amp	4q-Del	0.894	1
1q-Del	Del_11p15.5	0.894	1
Amp_1p22.3	Amp_8p11.23	0.894	1
Amp_3p25.1	Amp_11p13	0.894	1
Amp_11p13	Del_7p22.3	0.894	1
ARID1A	Del_7q36.1	0.895	1
EYS	NBPF9	0.895	1
FOXA1	16p-Amp	0.895	1
ICOSLG	6q-Del	0.895	1
SF3B1	Amp_11q13.3	0.895	1
SP3	6q-Del	0.895	1
SPEN	Amp_11q14.1	0.895	1
ZMYM3	16p-Del	0.895	1
14q-Del	Del_7q36.1	0.895	1
17q-Del	Amp_12q15	0.895	1
Amp_3q26.32	Amp_8p11.21	0.895	1
Amp_3q26.32	Del_22q13.32	0.895	1
Amp_6q21	Del_11q23.3	0.895	1
Amp_10q22.3	Del_8p23.2	0.895	1
Amp_12q15	Del_21q11.2	0.895	1
ARID1A	RAB42	0.896	1
ARID1A	ZBTB7C	0.896	1
ARID1A	ZNF362	0.896	1
FBXW7	SMAD4	0.896	1
FBXW7	ZFP36L2	0.896	1
KCNN3	Amp_11q13.3	0.896	1
KDM6A	ZFP36L2	0.896	1
PIK3CA	ZNF362	0.896	1
SMAD2	11p-Del	0.896	1
SMAD4	ZMYM3	0.896	1
SP3	Del_22q13.32	0.896	1
TFE3	Del_9q34.2	0.896	1
TGS1	18p-Del	0.896	1
TPP2	Amp_12q15	0.896	1
TPP2	Del_7q36.1	0.896	1
USP36	Amp_12q15	0.896	1
VCPIP1	Amp_11q13.3	0.896	1
ZFP36L1	Amp_12q15	0.896	1
ZFP36L2	ZMYM3	0.896	1
20q-Amp	Amp_3p25.1	0.896	1
7p-Amp	Del_9p23	0.896	1
8p-Amp	Del_12q24.31	0.896	1
Amp_3q26.32	Amp_4q13.3	0.896	1
Amp_11p13	Amp_12p13.33	0.896	1
Amp_11q14.1	Del_7p22.3	0.896	1
C17orf95	Del_4q35.1	0.897	1
C17orf95	Del_15q13.1	0.897	1
CASZ1	USP36	0.897	1
CASZ1	ZFP36L1	0.897	1
CBFB	22q-Del	0.897	1
CDC42EP1	Amp_8q24.21	0.897	1
CDC42EP1	Del_4q35.1	0.897	1
CDC42EP1	Del_15q13.1	0.897	1
FBXW7	Amp_1q21.3	0.897	1
FRMPD2	USP36	0.897	1
FRMPD2	ZFP36L1	0.897	1
KDM6A	Amp_1q21.3	0.897	1
NBPF9	Del_4q35.1	0.897	1
NBPF9	Del_15q13.1	0.897	1
NF1	Del_20p13	0.897	1
RB1	RUNX1	0.897	1
RBMX	USP36	0.897	1
RBMX	ZFP36L1	0.897	1
8q-Amp	11p-Del	0.897	1
16p-Del	Del_7q36.1	0.897	1
Del_1p22.1	Del_17q21.31	0.897	1
AQP12A	TAF1L	0.898	1
ICOSLG	TAF1L	0.898	1
KCNN3	Del_18q23	0.898	1
MAP3K1	5p-Amp	0.898	1
MAP3K1	22q-Del	0.898	1
MUC6	NCOR1	0.898	1
NCOR1	PIK3R1	0.898	1
NCOR1	Del_19q13.32	0.898	1
RB1	18q-Del	0.898	1
RBMX	Amp_20q13.2	0.898	1
SMAD4	Amp_1q21.3	0.898	1
SP3	TAF1L	0.898	1
TAF1L	TCP11	0.898	1
TFE3	Amp_1q21.3	0.898	1
TPP2	8q-Amp	0.898	1
USP36	8q-Amp	0.898	1
7p-Amp	Del_5q11.2	0.898	1
7p-Amp	Del_5q21.3	0.898	1
16q-Del	Del_11p15.5	0.898	1
18p-Del	Amp_3q26.32	0.898	1
4p-Del	Amp_1p22.3	0.898	1
Amp_6p23	Amp_19q13.42	0.898	1
Amp_8q24.21	Del_9q21.11	0.898	1
Amp_10q22.3	Del_2q37.3	0.898	1
ACTL6B	Amp_13q34	0.899	1
ARID1A	8p-Amp	0.899	1
GPRIN2	Amp_17q12	0.899	1
GPS2	Amp_13q34	0.899	1
MYB	Amp_3p25.1	0.899	1
SMAD2	Del_11q23.3	0.899	1
SMAD4	Del_11q23.3	0.899	1
SP3	Amp_20q13.2	0.899	1
TBX3	Amp_11q13.3	0.899	1
TGS1	Amp_3p25.1	0.899	1
TGS1	Del_7p22.3	0.899	1
Amp_19p13.12	Del_6p25.3	0.899	1
Amp_20q13.2	Del_6p25.3	0.899	1
ACTL6B	CDKN1B	0.9	1
ACTL6B	GPS2	0.9	1
ACTL6B	PTPN22	0.9	1
CDKN1B	GPS2	0.9	1
CDKN1B	1q-Del	0.9	1
GPS2	PTPN22	0.9	1
GPS2	1q-Del	0.9	1
KDM6A	PTEN	0.9	1
MUC6	Del_2q37.3	0.9	1
PTPN22	1q-Del	0.9	1
RUNX1	Amp_4q13.3	0.9	1
SMAD2	Amp_17q12	0.9	1
TFE3	Amp_17q12	0.9	1
TPP2	11q-Del	0.9	1
5p-Amp	Del_9p21.3	0.9	1
8q-Amp	Del_11q13.1	0.9	1
18p-Del	6q-Del	0.9	1
Amp_3p25.1	Amp_19q13.42	0.9	1
AQP12A	Del_11q13.1	0.901	1
FGFR2	TBL1XR1	0.901	1
FGFR2	VCPIP1	0.901	1
FGFR2	Amp_3q26.32	0.901	1
GPRIN2	KCNN3	0.901	1
GPRIN2	TBL1XR1	0.901	1
ICOSLG	20p-Amp	0.901	1
IL1RAP	NLGN3	0.901	1
IRS4	KCNN3	0.901	1
IRS4	TBL1XR1	0.901	1
IRS4	VCPIP1	0.901	1
KCNN3	NLGN3	0.901	1
MLL3	Del_11p15.5	0.901	1
NBPF9	16p-Amp	0.901	1
NBPF9	Amp_1q44	0.901	1
NLGN3	TBL1XR1	0.901	1
RUFY1	20p-Amp	0.901	1
SP3	20p-Amp	0.901	1
TCP11	20p-Amp	0.901	1
TCP11	8p-Del	0.901	1
TPP2	Del_8p23.2	0.901	1
USP36	Del_8p23.2	0.901	1
5p-Amp	5q-Del	0.901	1
Amp_13q34	Amp_17q23.1	0.901	1
Amp_17q12	Del_11p15.5	0.901	1
CDC42EP1	Amp_11q14.1	0.902	1
FBXW7	Del_12p13.1	0.902	1
FRMPD2	Amp_10q22.3	0.902	1
IL1RAP	Del_17p12	0.902	1
KDM6A	Del_12p13.1	0.902	1
MAP2K4	Amp_8p11.21	0.902	1
MED23	SMAD2	0.902	1
MED23	SMAD4	0.902	1
MED23	ZFP36L2	0.902	1
MED23	Del_18q23	0.902	1
MLL3	Amp_12q15	0.902	1
MUC6	SMAD2	0.902	1
MUC6	TFE3	0.902	1
MUC6	TP53	0.902	1
MUC6	ZFP36L2	0.902	1
NBPF9	20q-Amp	0.902	1
PIK3R1	SMAD4	0.902	1
PIK3R1	TFE3	0.902	1
PIK3R1	ZFP36L2	0.902	1
PIK3R1	Del_18q23	0.902	1
ZMYM3	Del_19p13.3	0.902	1
11p-Del	Amp_1p22.3	0.902	1
16q-Del	Del_20p13	0.902	1
17q-Del	Amp_11p13	0.902	1
1q-Del	Amp_17q23.1	0.902	1
Amp_1p22.3	Del_9q34.2	0.902	1
Amp_11p13	Del_21q11.2	0.902	1
IRS4	Amp_1p22.3	0.903	1
MLL3	MYH9	0.903	1
MUC6	Del_9q34.2	0.903	1
MYH9	Del_7q36.1	0.903	1
NF1	RB1	0.903	1
NLGN3	Amp_1p22.3	0.903	1
RB1	TBX3	0.903	1
SF3B1	Amp_12q15	0.903	1
SPEN	16p-Del	0.903	1
ZFP36L2	16q-Del	0.903	1
ZFP36L2	Del_6p25.3	0.903	1
17q-Amp	Del_7p22.3	0.903	1
13q-Del	Amp_12p13.33	0.903	1
Amp_1q21.3	Del_5q11.2	0.903	1
Amp_3p25.1	Amp_4q13.3	0.903	1
Amp_4q13.3	Del_7p22.3	0.903	1
Amp_13q34	Del_19p13.3	0.903	1
APC	AQP12A	0.904	1
APC	MAP2K4	0.904	1
APC	TCP11	0.904	1
AQP12A	CTCF	0.904	1
AQP12A	MYH9	0.904	1
AQP12A	SF3B1	0.904	1
CDKN1B	Del_4q35.1	0.904	1
CTCF	ICOSLG	0.904	1
CTCF	KRAS	0.904	1
CTCF	RUFY1	0.904	1
CTCF	SP3	0.904	1
CTCF	TCP11	0.904	1
HRNR	Amp_3q26.32	0.904	1
ICOSLG	SF3B1	0.904	1
KRAS	MYH9	0.904	1
KRAS	SF3B1	0.904	1
MYB	TPP2	0.904	1
MYB	USP36	0.904	1
MYB	ZFP36L1	0.904	1
MYH9	RUFY1	0.904	1
RUFY1	SF3B1	0.904	1
SF3B1	TCP11	0.904	1
TGS1	TPP2	0.904	1
TGS1	USP36	0.904	1
TGS1	ZFP36L1	0.904	1
TPP2	9q-Del	0.904	1
USP36	9q-Del	0.904	1
USP36	Del_20p13	0.904	1
ZFP36L1	9q-Del	0.904	1
5p-Amp	Del_9q21.11	0.904	1
7p-Amp	Del_6q15	0.904	1
11q-Del	Amp_19q13.42	0.904	1
Amp_4q13.3	Amp_10p15.1	0.904	1
Amp_6q21	Del_9q21.11	0.904	1
Amp_8p11.23	Del_7p22.3	0.904	1
Amp_14q21.1	Amp_15q26.3	0.904	1
Amp_14q21.1	Del_17p12	0.904	1
C17orf95	CDH1	0.905	1
ERBB2	NBPF9	0.905	1
IRS4	Amp_10p15.1	0.905	1
KCNN3	5q-Del	0.905	1
NBPF9	RB1	0.905	1
NBPF9	8q-Amp	0.905	1
NCOR1	Amp_17q12	0.905	1
NF1	Del_11q13.1	0.905	1
RUFY1	Del_5q21.3	0.905	1
TBX3	16q-Del	0.905	1
TBX3	Del_11q13.1	0.905	1
7p-Amp	17q-Del	0.905	1
18q-Del	Amp_3q26.32	0.905	1
Amp_1q44	Amp_6q21	0.905	1
ACTL6B	1p-Del	0.906	1
CASZ1	17q-Amp	0.906	1
FRMPD2	17q-Amp	0.906	1
GPS2	1p-Del	0.906	1
GPS2	Amp_14q21.1	0.906	1
KCNN3	Del_9p23	0.906	1
MLL3	PTEN	0.906	1
MLL3	16q-Del	0.906	1
NCOR1	RUNX1	0.906	1
PTPN22	Amp_14q21.1	0.906	1
RBMX	17q-Amp	0.906	1
20p-Amp	Del_9q34.2	0.906	1
20q-Amp	Del_6q27	0.906	1
5p-Amp	Del_8p23.2	0.906	1
5q-Del	Del_9p23	0.906	1
Amp_1q21.3	Amp_11p13	0.906	1
Amp_1q44	Del_7p22.3	0.906	1
Amp_11q14.1	Del_6q27	0.906	1
Amp_13q34	Del_1p36.13	0.906	1
Del_7p22.3	Del_22q13.32	0.906	1
FBXW7	Del_14q24.1	0.907	1
MED23	16p-Del	0.907	1
RB1	Amp_11p13	0.907	1
SMAD2	13q-Del	0.907	1
TAF1L	Amp_3q26.32	0.907	1
TFE3	Del_12p13.1	0.907	1
22q-Del	Amp_15q26.3	0.907	1
4q-Del	Amp_17q23.1	0.907	1
Amp_3p25.1	Del_5q21.3	0.907	1
APC	Amp_11q14.1	0.908	1
FOXA1	PAX2	0.908	1
FOXA1	RAB42	0.908	1
FOXA1	ZBTB7C	0.908	1
FOXA1	ZNF362	0.908	1
FOXA1	Del_19q13.32	0.908	1
ICOSLG	PIK3CA	0.908	1
IL1RAP	1q-Amp	0.908	1
MAP3K1	ZMYM3	0.908	1
MED23	Del_17p12	0.908	1
NBPF9	Amp_1q21.3	0.908	1
PIK3CA	RUFY1	0.908	1
PIK3CA	SP3	0.908	1
SF3B1	Amp_11q14.1	0.908	1
TP53	17p-Del	0.908	1
USP36	17p-Del	0.908	1
VCPIP1	1q-Amp	0.908	1
ZFP36L1	17p-Del	0.908	1
16p-Amp	Amp_11q13.3	0.908	1
16q-Del	Amp_11q13.3	0.908	1
Amp_3p25.1	Del_9q21.11	0.908	1
Amp_12p13.33	Del_9p23	0.908	1
Amp_19p13.12	Del_1p36.13	0.908	1
Del_1p22.1	Del_6p25.3	0.908	1
ACTL6B	Del_12q24.31	0.909	1
CASZ1	TFE3	0.909	1
CASZ1	ZFP36L2	0.909	1
CDKN1B	Del_12q24.31	0.909	1
EYS	Del_12q24.31	0.909	1
FRMPD2	SMAD4	0.909	1
GATA3	20q-Amp	0.909	1
ICOSLG	Amp_6p23	0.909	1
KCNN3	Del_22q13.32	0.909	1
NBPF9	Del_1p22.1	0.909	1
PTPN22	Del_12q23.1	0.909	1
PTPN22	Del_12q24.31	0.909	1
RBMX	SMAD4	0.909	1
RBMX	TFE3	0.909	1
RBMX	ZFP36L2	0.909	1
RUFY1	Amp_6p23	0.909	1
TCP11	Amp_6p23	0.909	1
TGS1	20p-Amp	0.909	1
5p-Amp	14q-Del	0.909	1
17q-Del	Amp_19q13.42	0.909	1
ACTL6B	IL1RAP	0.91	1
ACTL6B	KCNN3	0.91	1
ACTL6B	TBL1XR1	0.91	1
ACTL6B	VCPIP1	0.91	1
AQP12A	FBXW7	0.91	1
AQP12A	KDM6A	0.91	1
AQP12A	ZMYM3	0.91	1
ARID1A	ERBB2	0.91	1
CDKN1B	IL1RAP	0.91	1
CDKN1B	KCNN3	0.91	1
FBXW7	ICOSLG	0.91	1
FBXW7	SP3	0.91	1
FBXW7	TCP11	0.91	1
FOXA1	Amp_1q21.3	0.91	1
GPS2	IL1RAP	0.91	1
GPS2	KCNN3	0.91	1
GPS2	TBL1XR1	0.91	1
GPS2	VCPIP1	0.91	1
ICOSLG	KDM6A	0.91	1
ICOSLG	ZMYM3	0.91	1
IL1RAP	PTPN22	0.91	1
IL1RAP	1q-Del	0.91	1
IRS4	7p-Amp	0.91	1
KCNN3	PTPN22	0.91	1
KDM6A	KRAS	0.91	1
MLL3	7p-Amp	0.91	1
MYH9	Del_16q24.3	0.91	1
NLGN3	7p-Amp	0.91	1
PTPN22	TBL1XR1	0.91	1
SP3	ZMYM3	0.91	1
TBL1XR1	1q-Del	0.91	1
TCP11	ZMYM3	0.91	1
VCPIP1	1q-Del	0.91	1
20q-Amp	1q-Del	0.91	1
14q-Del	Amp_8p11.21	0.91	1
5q-Del	Amp_11q14.1	0.91	1
Amp_10p15.1	Del_19q13.32	0.91	1
Del_6q27	Del_19q13.32	0.91	1
ACTL6B	Del_11q25	0.911	1
FBXW7	16q-Del	0.911	1
FOXA1	Del_1p22.1	0.911	1
IL1RAP	5p-Amp	0.911	1
IL1RAP	Amp_6q21	0.911	1
KCNN3	Amp_6q21	0.911	1
MED23	Del_6p25.3	0.911	1
MUC6	Del_9p23	0.911	1
PIK3R1	PTEN	0.911	1
RB1	5p-Amp	0.911	1
RB1	Amp_19q13.42	0.911	1
VCPIP1	5p-Amp	0.911	1
VCPIP1	Amp_6q21	0.911	1
ZFP36L2	Del_6q15	0.911	1
Amp_11q14.1	Del_5q21.3	0.911	1
Amp_15q26.3	Amp_20q13.2	0.911	1
C17orf95	Amp_3q26.32	0.912	1
CBFB	PAX2	0.912	1
CBFB	RAB42	0.912	1
CBFB	ZBTB7C	0.912	1
CBFB	ZNF362	0.912	1
CDC42EP1	Amp_3q26.32	0.912	1
FGFR2	USP36	0.912	1
FGFR2	9p-Del	0.912	1
GPRIN2	USP36	0.912	1
GPRIN2	ZFP36L1	0.912	1
IRS4	TPP2	0.912	1
IRS4	USP36	0.912	1
IRS4	ZFP36L1	0.912	1
KCNN3	Amp_20q13.2	0.912	1
MAP3K1	SMAD4	0.912	1
MAP3K1	ZFP36L2	0.912	1
NBPF9	Amp_3q26.32	0.912	1
NLGN3	TPP2	0.912	1
NLGN3	ZFP36L1	0.912	1
PTPN22	Del_8p23.2	0.912	1
RB1	Amp_17q12	0.912	1
SMAD2	4q-Del	0.912	1
SMAD4	4q-Del	0.912	1
TFE3	4q-Del	0.912	1
TGS1	Del_3p21.31	0.912	1
1p-Del	Del_5q11.2	0.912	1
Amp_3p25.1	Del_1p22.1	0.912	1
Amp_3q26.32	Del_7q36.1	0.912	1
APC	CDH1	0.913	1
APC	Del_20p13	0.913	1
CTCF	Del_20p13	0.913	1
MAP2K4	Del_16q24.3	0.913	1
MYH9	Del_20p13	0.913	1
NBPF9	Amp_1p22.3	0.913	1
Amp_1q44	Del_11q23.3	0.913	1
Amp_8p11.21	Amp_17q23.1	0.913	1
Del_7q36.1	Del_11q13.1	0.913	1
APC	7q-Amp	0.914	1
C17orf95	17p-Del	0.914	1
CDC42EP1	17p-Del	0.914	1
CDH1	GPS2	0.914	1
CTCF	SPEN	0.914	1
FBXW7	MAP2K4	0.914	1
FGFR2	Amp_3p25.1	0.914	1
FGFR2	Del_13q14.2	0.914	1
GATA3	NLGN3	0.914	1
GPRIN2	Amp_3p25.1	0.914	1
KDM6A	MAP2K4	0.914	1
KDM6A	17q-Del	0.914	1
MAP2K4	ZMYM3	0.914	1
SF3B1	7q-Amp	0.914	1
TFE3	Del_9q21.11	0.914	1
USP36	Amp_15q26.3	0.914	1
ZFP36L2	Del_9q21.11	0.914	1
20p-Amp	Del_11q23.3	0.914	1
7q-Amp	Amp_6q21	0.914	1
22q-Del	Amp_11q14.1	0.914	1
Amp_20q13.2	Del_9q34.2	0.914	1
CBFB	Del_6p25.3	0.915	1
CDC42EP1	Amp_10p15.1	0.915	1
EYS	NCDN	0.915	1
EYS	PAX2	0.915	1
EYS	RAB42	0.915	1
EYS	ZNF362	0.915	1
NBPF9	TAF1L	0.915	1
NBPF9	Del_13q14.2	0.915	1
PAX2	Del_18q23	0.915	1
RUNX1	TAF1L	0.915	1
VCPIP1	Del_19p13.3	0.915	1
ZBTB7C	Del_18q23	0.915	1
17q-Amp	Amp_19p13.12	0.915	1
8p-Amp	Amp_11q14.1	0.915	1
14q-Del	Amp_1q21.3	0.915	1
Amp_6q21	Amp_19p13.12	0.915	1
Amp_17q12	Amp_19p13.12	0.915	1
Amp_19q12	Del_20p13	0.915	1
ACTL6B	Del_4p16.3	0.916	1
ACTL6B	Del_5q11.2	0.916	1
AQP12A	MED23	0.916	1
ARID1A	20p-Amp	0.916	1
ICOSLG	MED23	0.916	1
ICOSLG	MUC6	0.916	1
KRAS	MED23	0.916	1
KRAS	MUC6	0.916	1
MED23	RUFY1	0.916	1
MED23	SP3	0.916	1
MED23	TCP11	0.916	1
MUC6	RUFY1	0.916	1
MUC6	TCP11	0.916	1
MYB	SMAD2	0.916	1
MYB	SMAD4	0.916	1
MYB	TFE3	0.916	1
MYB	ZFP36L2	0.916	1
PIK3R1	SP3	0.916	1
PIK3R1	TCP11	0.916	1
RB1	Del_5q21.3	0.916	1
SMAD2	TGS1	0.916	1
SMAD2	17q-Del	0.916	1
SMAD2	Del_21q11.2	0.916	1
TFE3	Del_21q11.2	0.916	1
TGS1	ZFP36L2	0.916	1
20q-Amp	Amp_19p13.12	0.916	1
Amp_3p25.1	Del_6q15	0.916	1
Amp_4q13.3	Del_10q26.3	0.916	1
Amp_6p23	Del_7p22.3	0.916	1
AQP12A	Amp_17q23.1	0.917	1
IL1RAP	Amp_13q34	0.917	1
NCOR1	Del_2q37.3	0.917	1
NLGN3	8p-Amp	0.917	1
RBMX	Del_2q37.3	0.917	1
TP53	8p-Amp	0.917	1
ZMYM3	Amp_12q15	0.917	1
8p-Amp	Del_8p23.2	0.917	1
Amp_11q14.1	Del_17q21.31	0.917	1
ACTL6B	Del_1p22.1	0.918	1
CASZ1	16p-Del	0.918	1
CDKN1B	Del_1p22.1	0.918	1
FGFR2	TP53	0.918	1
FRMPD2	16p-Del	0.918	1
GPRIN2	TP53	0.918	1
HRNR	Del_10q23.31	0.918	1
MAP2K4	Del_11q23.3	0.918	1
NBPF9	Del_10q23.31	0.918	1
SMAD4	Amp_12q15	0.918	1
SMAD4	Del_6q27	0.918	1
SMAD4	Del_7q36.1	0.918	1
TFE3	Del_7q36.1	0.918	1
TGS1	17q-Amp	0.918	1
ZFP36L1	Amp_8p11.23	0.918	1
ZFP36L2	Amp_12q15	0.918	1
ZFP36L2	Del_7q36.1	0.918	1
5p-Amp	4p-Del	0.918	1
Amp_1q44	Del_12q24.31	0.918	1
APC	CDC42EP1	0.919	1
APC	NBPF9	0.919	1
C17orf95	CTCF	0.919	1
C17orf95	9p-Del	0.919	1
CDC42EP1	CTCF	0.919	1
CDC42EP1	MYH9	0.919	1
CDC42EP1	SF3B1	0.919	1
CTCF	NBPF9	0.919	1
FBXW7	Del_4q35.1	0.919	1
FGFR2	18q-Del	0.919	1
HRNR	KDM6A	0.919	1
IL1RAP	KCNN3	0.919	1
IL1RAP	TBL1XR1	0.919	1
KCNN3	TBL1XR1	0.919	1
KCNN3	VCPIP1	0.919	1
MYH9	NBPF9	0.919	1
NBPF9	SF3B1	0.919	1
NBPF9	9p-Del	0.919	1
NBPF9	Del_10q26.3	0.919	1
NLGN3	18q-Del	0.919	1
RB1	Del_9p23	0.919	1
TBL1XR1	VCPIP1	0.919	1
8p-Amp	Del_6q27	0.919	1
4q-Del	Amp_19p13.12	0.919	1
Amp_1q44	Del_15q13.1	0.919	1
Amp_11p13	Del_17p12	0.919	1
Amp_13q34	Del_17p12	0.919	1
Del_11q13.1	Del_12q24.31	0.919	1
ACTL6B	TPP2	0.92	1
ACTL6B	USP36	0.92	1
ACTL6B	ZFP36L1	0.92	1
CDKN1B	TPP2	0.92	1
CDKN1B	USP36	0.92	1
CDKN1B	ZFP36L1	0.92	1
GPS2	USP36	0.92	1
GPS2	ZFP36L1	0.92	1
IRS4	Amp_19p13.12	0.92	1
NCDN	Del_9p23	0.92	1
PIK3CA	TPP2	0.92	1
PTPN22	USP36	0.92	1
PTPN22	ZFP36L1	0.92	1
RUFY1	Del_2q37.3	0.92	1
TPP2	1q-Del	0.92	1
USP36	1q-Del	0.92	1
ZFP36L1	1q-Del	0.92	1
ZNF362	Del_9p23	0.92	1
8p-Amp	Del_14q24.1	0.92	1
16p-Del	Del_1p22.1	0.92	1
18q-Del	Amp_8q24.21	0.92	1
8p-Del	Del_5q21.3	0.92	1
ACTL6B	Del_19q13.32	0.921	1
AQP12A	RBMX	0.921	1
CASZ1	ICOSLG	0.921	1
CASZ1	TCP11	0.921	1
FOXA1	Amp_12p13.33	0.921	1
FRMPD2	ICOSLG	0.921	1
FRMPD2	SP3	0.921	1
FRMPD2	TCP11	0.921	1
ICOSLG	RBMX	0.921	1
KDM6A	Amp_11q13.3	0.921	1
MAP2K4	Del_12q23.1	0.921	1
MAP2K4	Del_12q24.31	0.921	1
MUC6	Del_19p13.3	0.921	1
NCDN	1q-Amp	0.921	1
RAB42	1q-Amp	0.921	1
RBMX	SP3	0.921	1
RBMX	TCP11	0.921	1
SMAD2	Del_11q25	0.921	1
20q-Amp	Amp_8p11.21	0.921	1
8q-Amp	Del_20p13	0.921	1
17p-Del	Amp_11p13	0.921	1
18q-Del	Amp_17q23.1	0.921	1
1q-Del	Del_19q13.32	0.921	1
9q-Del	Amp_12q15	0.921	1
Amp_8p11.21	Del_1p36.13	0.921	1
Amp_11q14.1	Del_22q13.32	0.921	1
Amp_19p13.12	Del_9p21.3	0.921	1
Amp_19q12	Del_6p25.3	0.921	1
Del_6p25.3	Del_21q11.2	0.921	1
AQP12A	11p-Del	0.922	1
AQP12A	Del_9q34.2	0.922	1
C17orf95	8p-Amp	0.922	1
CASZ1	PTEN	0.922	1
FGFR2	TFE3	0.922	1
FGFR2	ZFP36L2	0.922	1
FRMPD2	PTEN	0.922	1
GPRIN2	SMAD4	0.922	1
GPRIN2	TFE3	0.922	1
GPRIN2	ZFP36L2	0.922	1
ICOSLG	11p-Del	0.922	1
IRS4	SMAD4	0.922	1
IRS4	ZFP36L2	0.922	1
IRS4	Del_6q27	0.922	1
KCNN3	1p-Del	0.922	1
MAP3K1	MED23	0.922	1
MED23	4q-Del	0.922	1
MUC6	4q-Del	0.922	1
MYB	NCOR1	0.922	1
NBPF9	8p-Amp	0.922	1
NBPF9	18p-Del	0.922	1
NCOR1	TGS1	0.922	1
NLGN3	ZFP36L2	0.922	1
PIK3R1	4q-Del	0.922	1
PTEN	RBMX	0.922	1
RUFY1	11p-Del	0.922	1
TAF1L	4p-Del	0.922	1
VCPIP1	1p-Del	0.922	1
17q-Amp	Amp_1q44	0.922	1
1q-Del	Amp_3q26.32	0.922	1
Amp_6p23	Del_22q13.32	0.922	1
Amp_11q14.1	Del_6q15	0.922	1
Del_11q23.3	Del_21q11.2	0.922	1
CASZ1	Amp_17q23.1	0.923	1
ERBB2	NCDN	0.923	1
ERBB2	PAX2	0.923	1
ERBB2	RAB42	0.923	1
ERBB2	ZBTB7C	0.923	1
ERBB2	ZNF362	0.923	1
FOXA1	Amp_8p11.21	0.923	1
FRMPD2	Amp_17q23.1	0.923	1
KDM6A	PIK3CA	0.923	1
MYH9	Amp_3q26.32	0.923	1
NCDN	RB1	0.923	1
PAX2	RB1	0.923	1
PIK3CA	ZMYM3	0.923	1
RAB42	RB1	0.923	1
RB1	ZBTB7C	0.923	1
RB1	ZNF362	0.923	1
SF3B1	Amp_3q26.32	0.923	1
TPP2	5q-Del	0.923	1
USP36	5q-Del	0.923	1
ZMYM3	16p-Amp	0.923	1
ZMYM3	7q-Amp	0.923	1
22q-Del	Amp_19q13.42	0.923	1
Amp_11q14.1	Amp_17q23.1	0.923	1
ACTL6B	7p-Amp	0.924	1
CBFB	Del_1p22.1	0.924	1
CDC42EP1	FBXW7	0.924	1
CDC42EP1	KDM6A	0.924	1
CDC42EP1	ZMYM3	0.924	1
CDKN1B	Amp_1p22.3	0.924	1
CTCF	RUNX1	0.924	1
FBXW7	NBPF9	0.924	1
FOXA1	Amp_19q12	0.924	1
HRNR	Amp_14q21.1	0.924	1
KDM6A	NBPF9	0.924	1
MAP2K4	6q-Del	0.924	1
MYH9	RUNX1	0.924	1
NBPF9	ZMYM3	0.924	1
NBPF9	18q-Del	0.924	1
RUNX1	SF3B1	0.924	1
SMAD2	Del_20p13	0.924	1
SMAD4	Del_20p13	0.924	1
TBX3	16p-Del	0.924	1
TFE3	9q-Del	0.924	1
TFE3	Del_20p13	0.924	1
16p-Amp	Amp_11q14.1	0.924	1
7p-Amp	1q-Del	0.924	1
11q-Del	Amp_13q34	0.924	1
11q-Del	Amp_19p13.12	0.924	1
Amp_6p23	Amp_8p11.23	0.924	1
Amp_6p23	Del_6q15	0.924	1
Amp_11p13	Del_20p13	0.924	1
Del_10q23.31	Del_21q11.2	0.924	1
APC	Amp_15q26.3	0.925	1
CDC42EP1	6q-Del	0.925	1
FBXW7	20q-Amp	0.925	1
FBXW7	Amp_11q14.1	0.925	1
FBXW7	Del_20p13	0.925	1
HRNR	Del_9p21.3	0.925	1
KCNN3	Del_12q23.1	0.925	1
KCNN3	Del_12q24.31	0.925	1
MUC6	Del_9q21.11	0.925	1
TGS1	Amp_20q13.2	0.925	1
VCPIP1	Del_12q24.31	0.925	1
ZMYM3	15q-Del	0.925	1
ZNF362	Del_19p13.3	0.925	1
20p-Amp	Del_6p25.3	0.925	1
Amp_1q21.3	Amp_6q21	0.925	1
Amp_10q22.3	Del_4q35.1	0.925	1
ERBB2	1p-Del	0.926	1
EYS	20q-Amp	0.926	1
FOXA1	Amp_19p13.12	0.926	1
MAP2K4	7q-Amp	0.926	1
RB1	1p-Del	0.926	1
USP36	Amp_11p13	0.926	1
17q-Del	Amp_17q23.1	0.926	1
1q-Del	Amp_10p15.1	0.926	1
1q-Del	Amp_17q12	0.926	1
Amp_8p11.23	Del_12q23.1	0.926	1
APC	Amp_10p15.1	0.927	1
AQP12A	MYB	0.927	1
AQP12A	TGS1	0.927	1
AQP12A	TP53	0.927	1
ARID1A	8q-Amp	0.927	1
CTCF	Del_17p12	0.927	1
ERBB2	FOXA1	0.927	1
FGFR2	Amp_10q22.3	0.927	1
ICOSLG	MYB	0.927	1
ICOSLG	TGS1	0.927	1
IL1RAP	USP36	0.927	1
IL1RAP	ZFP36L1	0.927	1
IL1RAP	Del_15q13.1	0.927	1
IRS4	20p-Amp	0.927	1
IRS4	Amp_10q22.3	0.927	1
KCNN3	TPP2	0.927	1
KCNN3	USP36	0.927	1
KCNN3	ZFP36L1	0.927	1
KCNN3	Del_15q13.1	0.927	1
KRAS	MYB	0.927	1
KRAS	TGS1	0.927	1
KRAS	TP53	0.927	1
MUC6	Amp_17q12	0.927	1
MYB	RUFY1	0.927	1
MYB	SP3	0.927	1
MYB	TCP11	0.927	1
PTEN	Del_4p16.3	0.927	1
PTPN22	Amp_3p25.1	0.927	1
PTPN22	Del_7p22.3	0.927	1
TBL1XR1	TPP2	0.927	1
TBL1XR1	USP36	0.927	1
TBL1XR1	ZFP36L1	0.927	1
TBL1XR1	Del_4q35.1	0.927	1
TCP11	Del_6p25.3	0.927	1
USP36	VCPIP1	0.927	1
VCPIP1	ZFP36L1	0.927	1
8q-Amp	Del_2q37.3	0.927	1
1q-Del	Amp_3p25.1	0.927	1
1q-Del	Del_7p22.3	0.927	1
6q-Del	Del_17q21.31	0.927	1
Amp_4q13.3	Amp_10q22.3	0.927	1
Amp_6q21	Del_2q37.3	0.927	1
Amp_13q34	Del_18q23	0.927	1
Amp_17q23.1	Del_10q23.31	0.927	1
Amp_19q13.42	Del_2q37.3	0.927	1
MUC6	14q-Del	0.928	1
MUC6	Del_21q11.2	0.928	1
NCDN	Del_14q24.1	0.928	1
PAX2	Del_14q24.1	0.928	1
TBX3	16p-Amp	0.928	1
TPP2	Amp_19q13.42	0.928	1
USP36	5p-Amp	0.928	1
USP36	Amp_6q21	0.928	1
USP36	Amp_19q13.42	0.928	1
ZBTB7C	Del_11p15.5	0.928	1
ZFP36L1	Amp_6q21	0.928	1
ZFP36L1	Amp_19q13.42	0.928	1
ZNF362	Del_11p15.5	0.928	1
ZNF362	Del_14q24.1	0.928	1
16q-Del	Del_9p23	0.928	1
Amp_12q15	Amp_13q34	0.928	1
Amp_13q34	Del_7q36.1	0.928	1
Amp_17q23.1	Del_9q34.2	0.928	1
Del_10q26.3	Del_21q11.2	0.928	1
ACTL6B	SMAD2	0.929	1
ACTL6B	SMAD4	0.929	1
ACTL6B	TFE3	0.929	1
ACTL6B	ZFP36L2	0.929	1
C17orf95	MED23	0.929	1
CDC42EP1	MED23	0.929	1
CDC42EP1	MUC6	0.929	1
CDC42EP1	PIK3R1	0.929	1
CDH1	KDM6A	0.929	1
CDKN1B	SMAD2	0.929	1
CDKN1B	TFE3	0.929	1
CDKN1B	ZFP36L2	0.929	1
CTCF	NF1	0.929	1
GPS2	SMAD2	0.929	1
GPS2	SMAD4	0.929	1
GPS2	TFE3	0.929	1
GPS2	ZFP36L2	0.929	1
MED23	NBPF9	0.929	1
NBPF9	PIK3R1	0.929	1
NF1	SF3B1	0.929	1
PTPN22	SMAD2	0.929	1
PTPN22	TFE3	0.929	1
PTPN22	ZFP36L2	0.929	1
RB1	Del_12q23.1	0.929	1
SMAD2	1q-Del	0.929	1
SMAD2	Del_9p21.3	0.929	1
SMAD4	1q-Del	0.929	1
SMAD4	Del_9p21.3	0.929	1
TBL1XR1	16q-Del	0.929	1
TFE3	1q-Del	0.929	1
ZFP36L2	1q-Del	0.929	1
18q-Del	Del_8p23.2	0.929	1
1q-Del	Amp_8q24.21	0.929	1
4p-Del	Del_6q15	0.929	1
9q-Del	Amp_8p11.23	0.929	1
Amp_6q21	Amp_17q23.1	0.929	1
FGFR2	17q-Amp	0.93	1
MLL3	MUC6	0.93	1
MUC6	Amp_12q15	0.93	1
MUC6	Del_7q36.1	0.93	1
MYB	Amp_1q44	0.93	1
PIK3R1	Del_7q36.1	0.93	1
RUFY1	Del_17p12	0.93	1
SMAD2	11q-Del	0.93	1
SPEN	Del_12p13.1	0.93	1
17q-Amp	6q-Del	0.93	1
8q-Amp	16p-Del	0.93	1
15q-Del	Amp_6q21	0.93	1
16p-Del	Amp_1p22.3	0.93	1
1q-Del	Del_10q23.31	0.93	1
9q-Del	Amp_6q21	0.93	1
Amp_3q26.32	Del_10q23.31	0.93	1
Amp_4q13.3	Amp_11p13	0.93	1
Del_12q23.1	Del_19p13.3	0.93	1
Del_16q24.3	Del_19p13.3	0.93	1
ACTL6B	Del_10q26.3	0.931	1
C17orf95	Amp_11q13.3	0.931	1
MLL3	1q-Amp	0.931	1
NCDN	TAF1L	0.931	1
PAX2	TAF1L	0.931	1
PAX2	Del_11q23.3	0.931	1
RAB42	TAF1L	0.931	1
SMAD2	Del_16q24.3	0.931	1
TAF1L	ZNF362	0.931	1
TPP2	Amp_11q13.3	0.931	1
USP36	Amp_11q13.3	0.931	1
ZBTB7C	Del_11q23.3	0.931	1
20q-Amp	Amp_19q12	0.931	1
7q-Amp	Amp_14q21.1	0.931	1
8p-Amp	Amp_12p13.33	0.931	1
1p-Del	Amp_11p13	0.931	1
1q-Del	Del_10q26.3	0.931	1
9q-Del	Amp_3p25.1	0.931	1
Amp_3p25.1	Del_6q27	0.931	1
Amp_8p11.21	Del_15q13.1	0.931	1
Amp_12p13.33	Amp_14q21.1	0.931	1
Amp_12q15	Amp_19p13.12	0.931	1
CDKN1B	PIK3CA	0.932	1
GPS2	PIK3CA	0.932	1
HRNR	7q-Amp	0.932	1
HRNR	Amp_12p13.33	0.932	1
KCNN3	Amp_17q23.1	0.932	1
KDM6A	RUNX1	0.932	1
MAP2K4	MLL3	0.932	1
PIK3CA	PTPN22	0.932	1
PIK3R1	SPEN	0.932	1
RUNX1	ZMYM3	0.932	1
TAF1L	Amp_19q13.42	0.932	1
TBL1XR1	Amp_11q14.1	0.932	1
VCPIP1	Amp_17q23.1	0.932	1
17q-Amp	Amp_4q13.3	0.932	1
1q-Amp	Del_12q23.1	0.932	1
11q-Del	Amp_19q12	0.932	1
Amp_6q21	Amp_17q12	0.932	1
Amp_8p11.23	Del_5q11.2	0.932	1
Amp_11p13	Del_8p23.2	0.932	1
Amp_19p13.12	Del_22q13.32	0.932	1
Amp_19q12	Del_8p23.2	0.932	1
Amp_20q13.2	Del_11q13.1	0.932	1
ACTL6B	Amp_19p13.12	0.933	1
AQP12A	FGFR2	0.933	1
AQP12A	IRS4	0.933	1
AQP12A	NLGN3	0.933	1
ARID1A	CTCF	0.933	1
ARID1A	SF3B1	0.933	1
C17orf95	Del_5q21.3	0.933	1
CBFB	ERBB2	0.933	1
EYS	Del_11q25	0.933	1
FGFR2	ICOSLG	0.933	1
FGFR2	SP3	0.933	1
FGFR2	TCP11	0.933	1
GPRIN2	ICOSLG	0.933	1
GPRIN2	NCOR1	0.933	1
GPRIN2	RUFY1	0.933	1
GPRIN2	SP3	0.933	1
GPRIN2	TCP11	0.933	1
ICOSLG	IRS4	0.933	1
ICOSLG	NLGN3	0.933	1
IRS4	KRAS	0.933	1
IRS4	RUFY1	0.933	1
IRS4	SP3	0.933	1
IRS4	TCP11	0.933	1
KRAS	NLGN3	0.933	1
MAP2K4	Del_11q13.1	0.933	1
MLL3	16p-Amp	0.933	1
NBPF9	Del_5q21.3	0.933	1
NLGN3	SP3	0.933	1
PTPN22	4p-Del	0.933	1
PTPN22	Amp_19p13.12	0.933	1
SMAD2	Amp_15q26.3	0.933	1
ZBTB7C	Del_15q13.1	0.933	1
ZMYM3	Del_1p22.1	0.933	1
ZNF362	Del_4q35.1	0.933	1
20p-Amp	Amp_10q22.3	0.933	1
8p-Amp	11p-Del	0.933	1
14q-Del	16q-Del	0.933	1
16q-Del	Del_12q23.1	0.933	1
Amp_8p11.21	Del_19q13.32	0.933	1
Amp_17q12	Del_12q23.1	0.933	1
Amp_20q13.2	Del_22q13.32	0.933	1
AQP12A	4q-Del	0.934	1
CASZ1	CDC42EP1	0.934	1
CASZ1	NBPF9	0.934	1
CDC42EP1	FRMPD2	0.934	1
CDC42EP1	RBMX	0.934	1
FGFR2	Del_3p21.31	0.934	1
FRMPD2	NBPF9	0.934	1
FRMPD2	TP53	0.934	1
GPRIN2	Del_16q24.3	0.934	1
KRAS	1q-Amp	0.934	1
MAP2K4	RBMX	0.934	1
MAP3K1	SP3	0.934	1
MYH9	Del_10q26.3	0.934	1
NBPF9	RBMX	0.934	1
PAX2	16q-Del	0.934	1
PTPN22	Amp_1q44	0.934	1
RBMX	TP53	0.934	1
SP3	1q-Amp	0.934	1
SP3	4q-Del	0.934	1
TCP11	4q-Del	0.934	1
20p-Amp	Del_6q15	0.934	1
20q-Amp	Amp_10q22.3	0.934	1
22q-Del	Amp_11q13.3	0.934	1
8p-Del	Del_1p22.1	0.934	1
Amp_11q13.3	Del_3p21.31	0.934	1
Amp_11q13.3	Del_7p22.3	0.934	1
Amp_20q13.2	Del_6q27	0.934	1
Del_12q24.31	Del_22q13.32	0.934	1
APC	NCDN	0.935	1
APC	PAX2	0.935	1
APC	RAB42	0.935	1
APC	ZBTB7C	0.935	1
AQP12A	Del_9q21.11	0.935	1
C17orf95	Amp_6p23	0.935	1
C17orf95	Del_16q24.3	0.935	1
CDC42EP1	Amp_6p23	0.935	1
CTCF	NCDN	0.935	1
CTCF	PAX2	0.935	1
CTCF	RAB42	0.935	1
CTCF	ZBTB7C	0.935	1
CTCF	ZNF362	0.935	1
GPRIN2	Amp_6p23	0.935	1
HRNR	Del_16q24.3	0.935	1
ICOSLG	Amp_12p13.33	0.935	1
IL1RAP	Del_19q13.32	0.935	1
MUC6	Del_4q35.1	0.935	1
MYH9	PAX2	0.935	1
MYH9	RAB42	0.935	1
MYH9	ZBTB7C	0.935	1
MYH9	ZNF362	0.935	1
NBPF9	Del_16q24.3	0.935	1
NCDN	SF3B1	0.935	1
PAX2	SF3B1	0.935	1
PIK3R1	Del_4q35.1	0.935	1
PTPN22	8p-Amp	0.935	1
RAB42	SF3B1	0.935	1
RB1	Del_14q24.1	0.935	1
RUFY1	Amp_12p13.33	0.935	1
RUFY1	Del_9q21.11	0.935	1
SF3B1	ZBTB7C	0.935	1
SF3B1	ZNF362	0.935	1
SP3	Del_9q21.11	0.935	1
SPEN	Del_12q24.31	0.935	1
TPP2	USP36	0.935	1
TPP2	ZFP36L1	0.935	1
USP36	ZFP36L1	0.935	1
1q-Amp	Amp_17q23.1	0.935	1
17q-Del	1p-Del	0.935	1
18p-Del	1q-Del	0.935	1
1p-Del	Del_21q11.2	0.935	1
Amp_1p22.3	Del_10q23.31	0.935	1
Amp_14q21.1	Del_21q11.2	0.935	1
Amp_17q12	Del_18q23	0.935	1
Del_5q21.3	Del_11q23.3	0.935	1
Del_7q36.1	Del_9p21.3	0.935	1
CDH1	NF1	0.936	1
FBXW7	TBX3	0.936	1
IL1RAP	SMAD4	0.936	1
IL1RAP	TFE3	0.936	1
IL1RAP	ZFP36L2	0.936	1
KCNN3	SMAD2	0.936	1
KCNN3	SMAD4	0.936	1
KCNN3	ZFP36L2	0.936	1
KDM6A	Amp_15q26.3	0.936	1
MYH9	Amp_1q21.3	0.936	1
PAX2	16p-Amp	0.936	1
RBMX	4q-Del	0.936	1
SMAD2	TBL1XR1	0.936	1
SMAD4	TBL1XR1	0.936	1
SPEN	18p-Del	0.936	1
TBL1XR1	TFE3	0.936	1
TBL1XR1	ZFP36L2	0.936	1
TFE3	VCPIP1	0.936	1
ZBTB7C	16p-Amp	0.936	1
ZNF362	16p-Amp	0.936	1
5p-Amp	Amp_14q21.1	0.936	1
Amp_6p23	Del_3p21.31	0.936	1
AQP12A	14q-Del	0.937	1
AQP12A	17q-Del	0.937	1
CDKN1B	Del_6q15	0.937	1
HRNR	RBMX	0.937	1
ICOSLG	Amp_19q12	0.937	1
IL1RAP	Del_5q11.2	0.937	1
KCNN3	Del_5q11.2	0.937	1
MUC6	Del_20p13	0.937	1
NCDN	20q-Amp	0.937	1
PAX2	Amp_11q14.1	0.937	1
PIK3R1	9q-Del	0.937	1
PIK3R1	Del_20p13	0.937	1
RUFY1	14q-Del	0.937	1
TBX3	5p-Amp	0.937	1
TCP11	Del_21q11.2	0.937	1
TPP2	1p-Del	0.937	1
TPP2	Amp_8q24.21	0.937	1
USP36	Amp_14q21.1	0.937	1
ZBTB7C	20q-Amp	0.937	1
ZNF362	20q-Amp	0.937	1
ZNF362	Amp_11q14.1	0.937	1
7q-Amp	Del_9p21.3	0.937	1
8p-Amp	Del_21q11.2	0.937	1
Amp_1q44	Del_1p36.13	0.937	1
Amp_1q44	Del_13q14.2	0.937	1
Amp_10q22.3	Amp_12p13.33	0.937	1
Amp_11q14.1	Del_7q36.1	0.937	1
Amp_19p13.12	Amp_20q13.2	0.937	1
Del_6q15	Del_15q13.1	0.937	1
Del_10q23.31	Del_17q21.31	0.937	1
CDKN1B	6q-Del	0.938	1
ERBB2	EYS	0.938	1
EYS	RB1	0.938	1
KCNN3	Del_1p22.1	0.938	1
MUC6	16p-Amp	0.938	1
PIK3R1	16q-Del	0.938	1
RBMX	Amp_12p13.33	0.938	1
TBL1XR1	Del_1p22.1	0.938	1
16p-Amp	Amp_13q34	0.938	1
8p-Amp	18p-Del	0.938	1
13q-Del	Amp_11p13	0.938	1
13q-Del	Amp_15q26.3	0.938	1
Amp_8p11.21	Del_10q26.3	0.938	1
Amp_11q13.3	Del_19p13.3	0.938	1
Amp_13q34	Del_8p23.2	0.938	1
Amp_17q12	Amp_19q12	0.938	1
ACTL6B	AQP12A	0.939	1
ACTL6B	ICOSLG	0.939	1
ACTL6B	KRAS	0.939	1
ACTL6B	RUFY1	0.939	1
ACTL6B	SP3	0.939	1
ACTL6B	TCP11	0.939	1
ACTL6B	Amp_10q22.3	0.939	1
APC	Amp_11p13	0.939	1
AQP12A	CDKN1B	0.939	1
AQP12A	GPS2	0.939	1
AQP12A	MLL3	0.939	1
AQP12A	PTPN22	0.939	1
AQP12A	1q-Del	0.939	1
AQP12A	Del_7q36.1	0.939	1
CDC42EP1	MYB	0.939	1
CDC42EP1	Amp_8p11.21	0.939	1
CDC42EP1	Del_22q13.32	0.939	1
CDH1	ZBTB7C	0.939	1
CDKN1B	ICOSLG	0.939	1
CDKN1B	KRAS	0.939	1
CDKN1B	SP3	0.939	1
ERBB2	11p-Del	0.939	1
FBXW7	PAX2	0.939	1
FBXW7	RAB42	0.939	1
FBXW7	ZBTB7C	0.939	1
FBXW7	ZNF362	0.939	1
GPS2	ICOSLG	0.939	1
GPS2	KRAS	0.939	1
GPS2	RUFY1	0.939	1
GPS2	SP3	0.939	1
GPS2	TCP11	0.939	1
HRNR	Del_7q36.1	0.939	1
ICOSLG	PTPN22	0.939	1
ICOSLG	1q-Del	0.939	1
ICOSLG	Del_7q36.1	0.939	1
KDM6A	NCDN	0.939	1
KDM6A	PAX2	0.939	1
KDM6A	RAB42	0.939	1
KDM6A	ZBTB7C	0.939	1
KRAS	MLL3	0.939	1
KRAS	PTPN22	0.939	1
KRAS	1q-Del	0.939	1
MLL3	SP3	0.939	1
MYB	NBPF9	0.939	1
NBPF9	TGS1	0.939	1
NBPF9	Amp_8p11.21	0.939	1
NCDN	ZMYM3	0.939	1
RAB42	ZMYM3	0.939	1
RB1	Del_9q34.2	0.939	1
RUFY1	1q-Del	0.939	1
RUFY1	Del_7q36.1	0.939	1
SF3B1	Amp_11p13	0.939	1
SP3	1q-Del	0.939	1
TCP11	1q-Del	0.939	1
TCP11	Amp_12q15	0.939	1
TPP2	Del_12q23.1	0.939	1
ZBTB7C	ZMYM3	0.939	1
7p-Amp	Del_4q35.1	0.939	1
7q-Amp	Del_19p13.3	0.939	1
1p-Del	Del_10q23.31	0.939	1
22q-Del	Amp_20q13.2	0.939	1
Amp_10p15.1	Del_12p13.1	0.939	1
Del_2q37.3	Del_7p22.3	0.939	1
EYS	Amp_12p13.33	0.94	1
FOXA1	TAF1L	0.94	1
ICOSLG	13q-Del	0.94	1
IL1RAP	Amp_3p25.1	0.94	1
NCDN	Del_5q11.2	0.94	1
PAX2	Del_4p16.3	0.94	1
PIK3R1	20q-Amp	0.94	1
TFE3	5q-Del	0.94	1
TGS1	Del_18q23	0.94	1
USP36	Amp_8p11.21	0.94	1
USP36	Del_22q13.32	0.94	1
VCPIP1	Del_7p22.3	0.94	1
ZFP36L1	Amp_8p11.21	0.94	1
ZFP36L2	5q-Del	0.94	1
ZNF362	Del_4p16.3	0.94	1
20p-Amp	Amp_4q13.3	0.94	1
7q-Amp	Amp_12p13.33	0.94	1
17p-Del	Amp_11q14.1	0.94	1
4q-Del	Amp_4q13.3	0.94	1
ARID1A	20q-Amp	0.941	1
ARID1A	Amp_11p13	0.941	1
CDKN1B	17q-Amp	0.941	1
CDKN1B	Amp_1q21.3	0.941	1
CDKN1B	Amp_4q13.3	0.941	1
EYS	Amp_19p13.12	0.941	1
PAX2	Del_1p22.1	0.941	1
PTEN	11q-Del	0.941	1
RAB42	Del_1p22.1	0.941	1
RBMX	7q-Amp	0.941	1
TPP2	Amp_1q44	0.941	1
USP36	Amp_1q44	0.941	1
USP36	Del_14q24.1	0.941	1
ZFP36L1	Amp_1q44	0.941	1
17q-Amp	1q-Del	0.941	1
8q-Amp	Del_17p12	0.941	1
4q-Del	Amp_19q12	0.941	1
6q-Del	Del_4p16.3	0.941	1
Amp_8p11.21	Amp_12p13.33	0.941	1
Amp_12p13.33	Del_22q13.32	0.941	1
C17orf95	8p-Del	0.942	1
CASZ1	MLL3	0.942	1
FRMPD2	MLL3	0.942	1
MYB	PIK3CA	0.942	1
NBPF9	8p-Del	0.942	1
SMAD2	Amp_11p13	0.942	1
TFE3	Amp_11p13	0.942	1
TGS1	Del_17q21.31	0.942	1
TPP2	Amp_20q13.2	0.942	1
ZMYM3	Del_3p21.31	0.942	1
8p-Amp	Amp_12q15	0.942	1
1p-Del	Del_10q26.3	0.942	1
Amp_4q13.3	Amp_11q14.1	0.942	1
Amp_6p23	Del_9p23	0.942	1
Amp_11p13	Del_3p21.31	0.942	1
Amp_11q13.3	Del_6p25.3	0.942	1
Amp_17q12	Del_4p16.3	0.942	1
Amp_19q13.42	Del_11q13.1	0.942	1
FGFR2	PTEN	0.943	1
GPRIN2	PTEN	0.943	1
IL1RAP	Amp_1p22.3	0.943	1
MAP2K4	NF1	0.943	1
MAP2K4	TGS1	0.943	1
MAP2K4	7p-Amp	0.943	1
MED23	NCDN	0.943	1
MED23	PAX2	0.943	1
MED23	RAB42	0.943	1
MUC6	PAX2	0.943	1
MUC6	RAB42	0.943	1
MUC6	ZBTB7C	0.943	1
MUC6	ZNF362	0.943	1
NCDN	PIK3R1	0.943	1
NLGN3	PTEN	0.943	1
PAX2	PIK3R1	0.943	1
PAX2	Amp_3q26.32	0.943	1
PIK3R1	RAB42	0.943	1
PIK3R1	ZBTB7C	0.943	1
PIK3R1	ZNF362	0.943	1
RAB42	Amp_3q26.32	0.943	1
SMAD2	USP36	0.943	1
SMAD2	ZFP36L1	0.943	1
SMAD4	TPP2	0.943	1
SMAD4	USP36	0.943	1
SMAD4	ZFP36L1	0.943	1
TFE3	TPP2	0.943	1
TFE3	USP36	0.943	1
TFE3	ZFP36L1	0.943	1
TPP2	ZFP36L2	0.943	1
USP36	ZFP36L2	0.943	1
USP36	Del_17p12	0.943	1
ZFP36L1	ZFP36L2	0.943	1
ZFP36L1	Del_17p12	0.943	1
ZNF362	Amp_3q26.32	0.943	1
20p-Amp	Amp_11q14.1	0.943	1
7q-Amp	Amp_19q12	0.943	1
11p-Del	Amp_13q34	0.943	1
1q-Del	Del_13q14.2	0.943	1
Amp_4q13.3	Amp_12p13.33	0.943	1
Amp_4q13.3	Amp_13q34	0.943	1
Amp_10q22.3	Del_13q14.2	0.943	1
ACTL6B	NCOR1	0.944	1
AQP12A	9q-Del	0.944	1
ARID1A	Amp_19q13.42	0.944	1
C17orf95	GPRIN2	0.944	1
C17orf95	IRS4	0.944	1
C17orf95	NLGN3	0.944	1
C17orf95	Del_2q37.3	0.944	1
CDC42EP1	FGFR2	0.944	1
CDC42EP1	GPRIN2	0.944	1
CDC42EP1	IRS4	0.944	1
CDC42EP1	NLGN3	0.944	1
CDKN1B	NCOR1	0.944	1
FGFR2	NBPF9	0.944	1
GPRIN2	NBPF9	0.944	1
ICOSLG	9q-Del	0.944	1
IL1RAP	Amp_10p15.1	0.944	1
IRS4	NBPF9	0.944	1
MED23	NF1	0.944	1
MED23	TBX3	0.944	1
MLL3	Del_8p23.2	0.944	1
MLL3	Del_12q24.31	0.944	1
NBPF9	NLGN3	0.944	1
NCDN	Amp_1p22.3	0.944	1
PAX2	Del_11q25	0.944	1
PIK3R1	TBX3	0.944	1
RAB42	Amp_1p22.3	0.944	1
RB1	Del_4q35.1	0.944	1
RUFY1	Del_20p13	0.944	1
SMAD4	5p-Amp	0.944	1
SMAD4	17p-Del	0.944	1
TAF1L	Amp_14q21.1	0.944	1
TFE3	17p-Del	0.944	1
TFE3	Amp_6q21	0.944	1
TFE3	Amp_19q13.42	0.944	1
TGS1	Del_12p13.1	0.944	1
USP36	8p-Del	0.944	1
ZBTB7C	Amp_1p22.3	0.944	1
ZBTB7C	Del_11q25	0.944	1
ZFP36L2	Amp_19q13.42	0.944	1
11p-Del	Amp_8p11.21	0.944	1
16p-Del	Amp_17q23.1	0.944	1
18p-Del	Del_7p22.3	0.944	1
Amp_1q21.3	Del_18q23	0.944	1
Amp_1q44	Del_7q36.1	0.944	1
Amp_8p11.21	Amp_13q34	0.944	1
Amp_11q14.1	Del_4p16.3	0.944	1
Del_11q13.1	Del_17q21.31	0.944	1
AQP12A	IL1RAP	0.945	1
AQP12A	KCNN3	0.945	1
AQP12A	TBL1XR1	0.945	1
AQP12A	VCPIP1	0.945	1
C17orf95	Del_9q34.2	0.945	1
CBFB	TAF1L	0.945	1
CBFB	17q-Amp	0.945	1
CBFB	8p-Amp	0.945	1
CBFB	Amp_4q13.3	0.945	1
ERBB2	PIK3CA	0.945	1
ICOSLG	KCNN3	0.945	1
ICOSLG	TBL1XR1	0.945	1
ICOSLG	VCPIP1	0.945	1
IL1RAP	SP3	0.945	1
IL1RAP	TCP11	0.945	1
KCNN3	KRAS	0.945	1
KCNN3	RUFY1	0.945	1
KCNN3	SP3	0.945	1
KCNN3	TCP11	0.945	1
KRAS	TBL1XR1	0.945	1
KRAS	VCPIP1	0.945	1
MUC6	Del_5q11.2	0.945	1
NBPF9	Del_9q34.2	0.945	1
PIK3R1	Del_4p16.3	0.945	1
RUFY1	TBL1XR1	0.945	1
SP3	VCPIP1	0.945	1
TBL1XR1	TCP11	0.945	1
VCPIP1	Amp_19p13.12	0.945	1
1p-Del	Del_4q35.1	0.945	1
Amp_1p22.3	Amp_11p13	0.945	1
Amp_14q21.1	Del_4q35.1	0.945	1
ACTL6B	Del_5q21.3	0.946	1
CASZ1	Amp_17q12	0.946	1
HRNR	TGS1	0.946	1
SMAD4	Del_13q14.2	0.946	1
TAF1L	Amp_17q12	0.946	1
TP53	Amp_11p13	0.946	1
ZFP36L1	Amp_1q21.3	0.946	1
17q-Amp	Amp_19q12	0.946	1
18p-Del	Del_8p23.2	0.946	1
18q-Del	Amp_12q15	0.946	1
Amp_11p13	Del_12p13.1	0.946	1
APC	FOXA1	0.947	1
CASZ1	NCDN	0.947	1
CASZ1	PAX2	0.947	1
CASZ1	RAB42	0.947	1
CASZ1	ZBTB7C	0.947	1
CASZ1	ZNF362	0.947	1
FOXA1	SF3B1	0.947	1
FRMPD2	NCDN	0.947	1
FRMPD2	PAX2	0.947	1
FRMPD2	RAB42	0.947	1
FRMPD2	ZBTB7C	0.947	1
FRMPD2	ZNF362	0.947	1
ICOSLG	Del_6q27	0.947	1
KCNN3	Del_10q23.31	0.947	1
PAX2	RBMX	0.947	1
PAX2	Del_10q23.31	0.947	1
PTEN	Amp_10q22.3	0.947	1
RAB42	RBMX	0.947	1
RBMX	ZBTB7C	0.947	1
RBMX	ZNF362	0.947	1
SF3B1	Amp_13q34	0.947	1
TCP11	Del_6q27	0.947	1
TPP2	1q-Amp	0.947	1
USP36	1q-Amp	0.947	1
ZBTB7C	Del_10q23.31	0.947	1
ZFP36L1	1q-Amp	0.947	1
ZFP36L1	Del_15q13.1	0.947	1
20p-Amp	Del_10q23.31	0.947	1
5p-Amp	Del_14q24.1	0.947	1
15q-Del	Amp_8p11.21	0.947	1
18q-Del	Amp_3p25.1	0.947	1
Amp_11q13.3	Del_22q13.32	0.947	1
Amp_12p13.33	Del_1p36.13	0.947	1
APC	Del_11q13.1	0.948	1
ARID1A	MAP2K4	0.948	1
ARID1A	MED23	0.948	1
CASZ1	RUNX1	0.948	1
CBFB	NCOR1	0.948	1
GATA3	ZMYM3	0.948	1
HRNR	TBX3	0.948	1
HRNR	Del_20p13	0.948	1
IL1RAP	Del_10q26.3	0.948	1
KCNN3	9p-Del	0.948	1
KCNN3	Del_10q26.3	0.948	1
MAP3K1	MYB	0.948	1
NCDN	9p-Del	0.948	1
PAX2	Del_10q26.3	0.948	1
RB1	Del_7p22.3	0.948	1
RBMX	15q-Del	0.948	1
TFE3	Amp_13q34	0.948	1
TPP2	Del_19q13.32	0.948	1
ZBTB7C	Del_10q26.3	0.948	1
ZFP36L2	Amp_13q34	0.948	1
ZNF362	9p-Del	0.948	1
5p-Amp	Del_5q21.3	0.948	1
8p-Amp	1p-Del	0.948	1
16q-Del	Del_18q23	0.948	1
18p-Del	Amp_14q21.1	0.948	1
Amp_4q13.3	Del_11q23.3	0.948	1
Amp_6p23	Del_20p13	0.948	1
Amp_6q21	Del_11q25	0.948	1
Amp_10p15.1	Del_13q14.2	0.948	1
Amp_12q15	Del_5q11.2	0.948	1
Amp_12q15	Del_6q27	0.948	1
Amp_19q13.42	Del_11q25	0.948	1
Del_12p13.1	Del_16q24.3	0.948	1
ACTL6B	C17orf95	0.949	1
ACTL6B	CDC42EP1	0.949	1
C17orf95	CDKN1B	0.949	1
C17orf95	1q-Del	0.949	1
C17orf95	Del_6p25.3	0.949	1
CDC42EP1	CDKN1B	0.949	1
CDC42EP1	GPS2	0.949	1
CDC42EP1	PTPN22	0.949	1
CDC42EP1	1q-Del	0.949	1
CDKN1B	NBPF9	0.949	1
EYS	Amp_17q12	0.949	1
GATA3	NCDN	0.949	1
GATA3	PAX2	0.949	1
GATA3	ZBTB7C	0.949	1
GATA3	11q-Del	0.949	1
GPS2	NBPF9	0.949	1
ICOSLG	Amp_8q24.21	0.949	1
KCNN3	Amp_17q12	0.949	1
NBPF9	PTPN22	0.949	1
NBPF9	Del_8p23.2	0.949	1
NCDN	4p-Del	0.949	1
PAX2	4p-Del	0.949	1
PTPN22	16p-Del	0.949	1
RB1	Amp_8q24.21	0.949	1
RBMX	Del_15q13.1	0.949	1
SMAD2	Del_18q23	0.949	1
TCP11	Amp_8q24.21	0.949	1
VCPIP1	Amp_17q12	0.949	1
ZNF362	4p-Del	0.949	1
17q-Amp	Amp_12q15	0.949	1
20q-Amp	Del_17p12	0.949	1
7q-Amp	Del_11q13.1	0.949	1
13q-Del	Amp_10q22.3	0.949	1
16q-Del	Amp_8p11.23	0.949	1
Amp_11q13.3	Amp_12p13.33	0.949	1
Amp_20q13.2	Del_4p16.3	0.949	1
AQP12A	Amp_15q26.3	0.95	1
KCNN3	Amp_10q22.3	0.95	1
KDM6A	18p-Del	0.95	1
NF1	Del_17q21.31	0.95	1
PAX2	8p-Amp	0.95	1
PAX2	18p-Del	0.95	1
PIK3R1	Amp_3q26.32	0.95	1
PTPN22	TP53	0.95	1
RB1	Del_3p21.31	0.95	1
RB1	Del_9p21.3	0.95	1
RUFY1	Amp_15q26.3	0.95	1
SMAD2	SMAD4	0.95	1
SMAD2	ZFP36L2	0.95	1
SMAD2	Del_17q21.31	0.95	1
SMAD4	TFE3	0.95	1
SMAD4	ZFP36L2	0.95	1
TFE3	ZFP36L2	0.95	1
TP53	Del_12p13.1	0.95	1
ZBTB7C	18p-Del	0.95	1
ZMYM3	8p-Amp	0.95	1
ZMYM3	18p-Del	0.95	1
17q-Amp	1p-Del	0.95	1
15q-Del	Del_12p13.1	0.95	1
4p-Del	Amp_11q14.1	0.95	1
9q-Del	Del_12p13.1	0.95	1
Amp_4q13.3	Del_5q11.2	0.95	1
Amp_15q26.3	Del_13q14.2	0.95	1
Amp_17q23.1	Del_6p25.3	0.95	1
Del_6q15	Del_10q23.31	0.95	1
APC	CBFB	0.951	1
AQP12A	TPP2	0.951	1
AQP12A	USP36	0.951	1
AQP12A	ZFP36L1	0.951	1
AQP12A	Del_1p36.13	0.951	1
C17orf95	Del_12p13.1	0.951	1
CDC42EP1	22q-Del	0.951	1
ERBB2	Del_12p13.1	0.951	1
FRMPD2	TBX3	0.951	1
GATA3	Amp_20q13.2	0.951	1
GPRIN2	MAP2K4	0.951	1
ICOSLG	TPP2	0.951	1
ICOSLG	USP36	0.951	1
ICOSLG	ZFP36L1	0.951	1
ICOSLG	Del_1p36.13	0.951	1
IL1RAP	8p-Amp	0.951	1
KCNN3	18p-Del	0.951	1
KRAS	USP36	0.951	1
KRAS	ZFP36L1	0.951	1
MYB	NCDN	0.951	1
MYB	RAB42	0.951	1
MYB	ZBTB7C	0.951	1
MYB	ZNF362	0.951	1
NBPF9	Del_12p13.1	0.951	1
NCDN	TGS1	0.951	1
NF1	RBMX	0.951	1
PAX2	TGS1	0.951	1
PAX2	18q-Del	0.951	1
PIK3R1	Del_1p36.13	0.951	1
RAB42	TGS1	0.951	1
RB1	Del_12p13.1	0.951	1
RBMX	TBX3	0.951	1
RUFY1	USP36	0.951	1
RUFY1	ZFP36L1	0.951	1
RUFY1	Del_1p36.13	0.951	1
SMAD2	1p-Del	0.951	1
SP3	TPP2	0.951	1
SP3	USP36	0.951	1
SP3	ZFP36L1	0.951	1
TCP11	TPP2	0.951	1
TCP11	USP36	0.951	1
TCP11	ZFP36L1	0.951	1
TGS1	ZBTB7C	0.951	1
TGS1	ZNF362	0.951	1
USP36	Amp_11q14.1	0.951	1
VCPIP1	18p-Del	0.951	1
ZBTB7C	18q-Del	0.951	1
ZFP36L1	20q-Amp	0.951	1
ZFP36L1	Amp_11q14.1	0.951	1
20p-Amp	Del_10q26.3	0.951	1
7p-Amp	Amp_3p25.1	0.951	1
15q-Del	Amp_14q21.1	0.951	1
16p-Del	Amp_6q21	0.951	1
Amp_3q26.32	Amp_10q22.3	0.951	1
Amp_19p13.12	Del_2q37.3	0.951	1
Del_7q36.1	Del_18q23	0.951	1
ARID1A	HRNR	0.952	1
C17orf95	Amp_17q23.1	0.952	1
CDKN1B	PTEN	0.952	1
FGFR2	Del_6p25.3	0.952	1
HRNR	Amp_3p25.1	0.952	1
ICOSLG	Amp_1q44	0.952	1
IL1RAP	Amp_4q13.3	0.952	1
KCNN3	17q-Amp	0.952	1
KDM6A	18q-Del	0.952	1
SPEN	TBX3	0.952	1
TPP2	Del_7p22.3	0.952	1
VCPIP1	18q-Del	0.952	1
ZFP36L1	Amp_3p25.1	0.952	1
ZMYM3	18q-Del	0.952	1
ZNF362	6q-Del	0.952	1
8p-Amp	Amp_11q13.3	0.952	1
8q-Amp	Del_5q21.3	0.952	1
11p-Del	Amp_12p13.33	0.952	1
14q-Del	Amp_3q26.32	0.952	1
15q-Del	Amp_20q13.2	0.952	1
22q-Del	Amp_8p11.21	0.952	1
Amp_3q26.32	Del_21q11.2	0.952	1
Amp_4q13.3	Del_9p23	0.952	1
Amp_8p11.23	Del_9q21.11	0.952	1
Amp_8p11.21	Del_7p22.3	0.952	1
Amp_8q24.21	Del_10q23.31	0.952	1
Amp_11q13.3	Del_19q13.32	0.952	1
CASZ1	Amp_11q14.1	0.953	1
FBXW7	FOXA1	0.953	1
FOXA1	KDM6A	0.953	1
FOXA1	ZMYM3	0.953	1
MED23	Del_22q13.32	0.953	1
MLL3	MYB	0.953	1
PTPN22	Del_3p21.31	0.953	1
PTPN22	Del_9p21.3	0.953	1
SMAD2	Del_9p23	0.953	1
SMAD4	Del_12q24.31	0.953	1
TFE3	Del_12q23.1	0.953	1
TFE3	Del_12q24.31	0.953	1
TGS1	Amp_12q15	0.953	1
20q-Amp	15q-Del	0.953	1
7q-Amp	Del_16q24.3	0.953	1
15q-Del	Amp_10q22.3	0.953	1
17p-Del	Amp_20q13.2	0.953	1
17q-Del	Del_7q36.1	0.953	1
1q-Del	Del_17p12	0.953	1
9q-Del	Amp_10q22.3	0.953	1
Amp_8p11.23	Del_10q23.31	0.953	1
Amp_10q22.3	Del_20p13	0.953	1
Amp_11q14.1	Del_16q24.3	0.953	1
Del_5q11.2	Del_11q23.3	0.953	1
Del_7q36.1	Del_21q11.2	0.953	1
ACTL6B	11q-Del	0.954	1
ARID1A	FRMPD2	0.954	1
ARID1A	RBMX	0.954	1
C17orf95	KCNN3	0.954	1
C17orf95	MAP3K1	0.954	1
C17orf95	TBL1XR1	0.954	1
C17orf95	VCPIP1	0.954	1
CDC42EP1	IL1RAP	0.954	1
CDC42EP1	KCNN3	0.954	1
CDC42EP1	TBL1XR1	0.954	1
CDC42EP1	VCPIP1	0.954	1
CDH1	NCOR1	0.954	1
FGFR2	HRNR	0.954	1
GPRIN2	HRNR	0.954	1
GPS2	11q-Del	0.954	1
ICOSLG	Del_3p21.31	0.954	1
IL1RAP	NBPF9	0.954	1
KCNN3	NBPF9	0.954	1
KCNN3	6q-Del	0.954	1
NBPF9	TBL1XR1	0.954	1
NBPF9	VCPIP1	0.954	1
NCOR1	VCPIP1	0.954	1
USP36	22q-Del	0.954	1
USP36	Del_5q11.2	0.954	1
VCPIP1	13q-Del	0.954	1
20q-Amp	Del_7p22.3	0.954	1
11q-Del	1q-Del	0.954	1
9q-Del	Amp_15q26.3	0.954	1
Amp_11q13.3	Amp_19p13.12	0.954	1
Amp_12q15	Del_17q21.31	0.954	1
Amp_15q26.3	Amp_17q23.1	0.954	1
AQP12A	11q-Del	0.955	1
C17orf95	Del_9q21.11	0.955	1
CDC42EP1	Del_9q21.11	0.955	1
CTCF	EYS	0.955	1
CTCF	Amp_6p23	0.955	1
EYS	SF3B1	0.955	1
FGFR2	NCDN	0.955	1
FGFR2	PAX2	0.955	1
FGFR2	RAB42	0.955	1
FGFR2	ZBTB7C	0.955	1
FGFR2	ZNF362	0.955	1
GPRIN2	NCDN	0.955	1
GPRIN2	PAX2	0.955	1
GPRIN2	RAB42	0.955	1
GPRIN2	ZBTB7C	0.955	1
GPRIN2	ZNF362	0.955	1
IRS4	NCDN	0.955	1
IRS4	PAX2	0.955	1
IRS4	RAB42	0.955	1
IRS4	ZBTB7C	0.955	1
IRS4	ZNF362	0.955	1
MYH9	Del_17q21.31	0.955	1
NBPF9	Amp_12p13.33	0.955	1
NCDN	NLGN3	0.955	1
NCDN	20p-Amp	0.955	1
NCOR1	PTEN	0.955	1
NLGN3	PAX2	0.955	1
NLGN3	RAB42	0.955	1
NLGN3	ZBTB7C	0.955	1
RUNX1	TGS1	0.955	1
TAF1L	Del_19p13.3	0.955	1
ZBTB7C	20p-Amp	0.955	1
ZBTB7C	Del_11q13.1	0.955	1
ZNF362	20p-Amp	0.955	1
20q-Amp	Del_2q37.3	0.955	1
22q-Del	Del_5q21.3	0.955	1
4p-Del	Del_11q13.1	0.955	1
Amp_1q21.3	Amp_13q34	0.955	1
Amp_3q26.32	Amp_15q26.3	0.955	1
Amp_11p13	Del_15q13.1	0.955	1
Amp_19q12	Del_11q13.1	0.955	1
Del_6q15	Del_10q26.3	0.955	1
Del_7q36.1	Del_22q13.32	0.955	1
CASZ1	CDH1	0.956	1
CDC42EP1	17q-Del	0.956	1
CDH1	FRMPD2	0.956	1
ERBB2	Del_1p22.1	0.956	1
FBXW7	1q-Amp	0.956	1
FRMPD2	Amp_8q24.21	0.956	1
ICOSLG	5q-Del	0.956	1
KDM6A	1q-Amp	0.956	1
MUC6	Del_3p21.31	0.956	1
NBPF9	14q-Del	0.956	1
NBPF9	17q-Del	0.956	1
RUFY1	5q-Del	0.956	1
TP53	13q-Del	0.956	1
TPP2	Amp_19p13.12	0.956	1
USP36	Amp_17q23.1	0.956	1
USP36	Amp_19p13.12	0.956	1
7q-Amp	16q-Del	0.956	1
8q-Amp	Amp_3p25.1	0.956	1
8q-Amp	Del_7p22.3	0.956	1
11p-Del	Del_21q11.2	0.956	1
Amp_4q13.3	Amp_17q23.1	0.956	1
Amp_10q22.3	Del_19p13.3	0.956	1
Amp_13q34	Amp_15q26.3	0.956	1
Amp_15q26.3	Amp_19p13.12	0.956	1
Amp_17q12	Del_13q14.2	0.956	1
Amp_19q12	Del_9q34.2	0.956	1
Del_2q37.3	Del_7q36.1	0.956	1
Del_16q24.3	Del_20p13	0.956	1
AQP12A	SMAD2	0.957	1
AQP12A	SMAD4	0.957	1
AQP12A	TFE3	0.957	1
AQP12A	ZFP36L2	0.957	1
AQP12A	Amp_11p13	0.957	1
C17orf95	Amp_12q15	0.957	1
CDC42EP1	Amp_12q15	0.957	1
CDKN1B	1q-Amp	0.957	1
FBXW7	Amp_1q44	0.957	1
FGFR2	SPEN	0.957	1
FGFR2	7q-Amp	0.957	1
ICOSLG	SMAD2	0.957	1
ICOSLG	SMAD4	0.957	1
ICOSLG	TFE3	0.957	1
ICOSLG	ZFP36L2	0.957	1
ICOSLG	Amp_11p13	0.957	1
IL1RAP	Del_11q13.1	0.957	1
IRS4	7q-Amp	0.957	1
KCNN3	20p-Amp	0.957	1
KCNN3	Del_6q15	0.957	1
KDM6A	Amp_1q44	0.957	1
KRAS	SMAD4	0.957	1
KRAS	TFE3	0.957	1
KRAS	ZFP36L2	0.957	1
MLL3	NBPF9	0.957	1
MUC6	Amp_11p13	0.957	1
NBPF9	Amp_12q15	0.957	1
NCDN	Del_5q21.3	0.957	1
PIK3R1	8p-Del	0.957	1
PTPN22	1q-Amp	0.957	1
RBMX	Del_4p16.3	0.957	1
RUFY1	TFE3	0.957	1
SMAD2	SP3	0.957	1
SMAD2	TCP11	0.957	1
SP3	TFE3	0.957	1
SP3	ZFP36L2	0.957	1
TBL1XR1	Del_11q13.1	0.957	1
TCP11	TFE3	0.957	1
TCP11	ZFP36L2	0.957	1
TP53	5p-Amp	0.957	1
USP36	Del_11q23.3	0.957	1
ZNF362	Del_5q21.3	0.957	1
20q-Amp	Del_1p36.13	0.957	1
13q-Del	Amp_10p15.1	0.957	1
15q-Del	18p-Del	0.957	1
15q-Del	Amp_17q23.1	0.957	1
1p-Del	Del_6q27	0.957	1
1p-Del	Del_12q23.1	0.957	1
Amp_3q26.32	Amp_17q12	0.957	1
Amp_11p13	Amp_20q13.2	0.957	1
Amp_11p13	Del_6q27	0.957	1
Amp_12p13.33	Del_9p21.3	0.957	1
EYS	Del_11q23.3	0.958	1
FOXA1	MUC6	0.958	1
FOXA1	Del_16q24.3	0.958	1
IL1RAP	8q-Amp	0.958	1
MUC6	9p-Del	0.958	1
MUC6	Del_10q26.3	0.958	1
NF1	TGS1	0.958	1
SMAD2	Del_19p13.3	0.958	1
TAF1L	TP53	0.958	1
TBX3	TGS1	0.958	1
USP36	Amp_3q26.32	0.958	1
ZNF362	17p-Del	0.958	1
17q-Amp	9q-Del	0.958	1
20p-Amp	Del_7p22.3	0.958	1
13q-Del	Amp_12q15	0.958	1
15q-Del	Amp_4q13.3	0.958	1
6q-Del	Amp_8q24.21	0.958	1
8p-Del	Amp_19q12	0.958	1
Amp_8p11.23	Del_22q13.32	0.958	1
Amp_8p11.21	Del_10q23.31	0.958	1
Amp_11q14.1	Del_12q23.1	0.958	1
Del_7p22.3	Del_11q13.1	0.958	1
ACTL6B	NCDN	0.959	1
ACTL6B	RAB42	0.959	1
ACTL6B	ZBTB7C	0.959	1
C17orf95	USP36	0.959	1
C17orf95	ZFP36L1	0.959	1
CDC42EP1	TPP2	0.959	1
CDC42EP1	ZFP36L1	0.959	1
CDKN1B	MAP2K4	0.959	1
CDKN1B	NCDN	0.959	1
CDKN1B	PAX2	0.959	1
CDKN1B	RAB42	0.959	1
CDKN1B	ZBTB7C	0.959	1
CDKN1B	ZNF362	0.959	1
GPS2	MAP2K4	0.959	1
GPS2	NCDN	0.959	1
GPS2	PAX2	0.959	1
GPS2	RAB42	0.959	1
GPS2	ZBTB7C	0.959	1
GPS2	ZNF362	0.959	1
IL1RAP	16p-Del	0.959	1
KDM6A	1p-Del	0.959	1
MAP2K4	PTPN22	0.959	1
MAP2K4	1q-Del	0.959	1
MAP3K1	NLGN3	0.959	1
NBPF9	TPP2	0.959	1
NBPF9	USP36	0.959	1
NCDN	PTPN22	0.959	1
NCDN	1q-Del	0.959	1
NCDN	Amp_6p23	0.959	1
PAX2	PTPN22	0.959	1
PAX2	1q-Del	0.959	1
PIK3CA	ZFP36L2	0.959	1
PIK3R1	4p-Del	0.959	1
PIK3R1	Amp_19q13.42	0.959	1
PTPN22	RAB42	0.959	1
PTPN22	ZBTB7C	0.959	1
PTPN22	ZNF362	0.959	1
RAB42	1q-Del	0.959	1
RAB42	Del_13q14.2	0.959	1
RB1	Amp_10q22.3	0.959	1
SMAD2	Amp_11q13.3	0.959	1
SMAD2	Del_11p15.5	0.959	1
SP3	Amp_19q13.42	0.959	1
TCP11	5p-Amp	0.959	1
ZBTB7C	1q-Del	0.959	1
ZFP36L1	16q-Del	0.959	1
ZFP36L1	Amp_1p22.3	0.959	1
ZNF362	1q-Del	0.959	1
20q-Amp	11p-Del	0.959	1
Amp_1q21.3	Del_7q36.1	0.959	1
Amp_1q44	Amp_11q13.3	0.959	1
Amp_3p25.1	Del_11q25	0.959	1
Amp_3q26.32	Amp_11q13.3	0.959	1
Amp_6q21	Del_10q23.31	0.959	1
Amp_8p11.23	Del_10q26.3	0.959	1
Amp_17q23.1	Del_21q11.2	0.959	1
Amp_19q12	Del_4q35.1	0.959	1
Amp_19q13.42	Del_10q23.31	0.959	1
ACTL6B	11p-Del	0.96	1
EYS	FBXW7	0.96	1
EYS	KDM6A	0.96	1
EYS	ZMYM3	0.96	1
FGFR2	Del_9p23	0.96	1
FGFR2	Del_9q21.11	0.96	1
MYH9	Amp_17q12	0.96	1
NCOR1	17p-Del	0.96	1
PIK3R1	18p-Del	0.96	1
TFE3	Del_19q13.32	0.96	1
TPP2	Amp_10q22.3	0.96	1
ZFP36L2	Del_19q13.32	0.96	1
16p-Amp	Amp_11p13	0.96	1
16p-Amp	Amp_12p13.33	0.96	1
11p-Del	Del_7q36.1	0.96	1
18p-Del	Amp_8q24.21	0.96	1
1p-Del	Amp_8q24.21	0.96	1
Amp_3q26.32	Amp_17q23.1	0.96	1
Amp_3q26.32	Del_9p23	0.96	1
Amp_12q15	Del_9q34.2	0.96	1
ARID1A	MYB	0.961	1
C17orf95	9q-Del	0.961	1
CDC42EP1	15q-Del	0.961	1
FOXA1	PIK3CA	0.961	1
FOXA1	Amp_11q13.3	0.961	1
HRNR	Del_1p22.1	0.961	1
IL1RAP	PTEN	0.961	1
MLL3	RB1	0.961	1
NBPF9	15q-Del	0.961	1
PTEN	TBL1XR1	0.961	1
PTEN	VCPIP1	0.961	1
SMAD4	7p-Amp	0.961	1
7p-Amp	Amp_12p13.33	0.961	1
1p-Del	Del_8p23.2	0.961	1
APC	RB1	0.962	1
ARID1A	Del_6q27	0.962	1
CBFB	MUC6	0.962	1
GPRIN2	17q-Del	0.962	1
HRNR	1q-Del	0.962	1
KCNN3	Amp_6p23	0.962	1
MAP2K4	Amp_8p11.23	0.962	1
NLGN3	RUNX1	0.962	1
PTEN	16p-Del	0.962	1
RAB42	Amp_8p11.23	0.962	1
TPP2	17q-Amp	0.962	1
TPP2	Amp_4q13.3	0.962	1
USP36	17q-Amp	0.962	1
USP36	Amp_4q13.3	0.962	1
USP36	Del_10q23.31	0.962	1
ZFP36L1	Amp_4q13.3	0.962	1
20p-Amp	Amp_14q21.1	0.962	1
16p-Del	Amp_11q14.1	0.962	1
6q-Del	Amp_8p11.21	0.962	1
Amp_1q44	Del_18q23	0.962	1
Amp_6p23	Amp_17q12	0.962	1
Amp_8p11.23	Del_14q24.1	0.962	1
Amp_10q22.3	Del_10q26.3	0.962	1
Amp_11q13.3	Del_7q36.1	0.962	1
Amp_12p13.33	Del_6p25.3	0.962	1
Amp_19p13.12	Del_7p22.3	0.962	1
Amp_19p13.12	Del_18q23	0.962	1
ACTL6B	Del_6p25.3	0.963	1
AQP12A	ICOSLG	0.963	1
AQP12A	KRAS	0.963	1
AQP12A	RUFY1	0.963	1
AQP12A	SP3	0.963	1
AQP12A	TCP11	0.963	1
ARID1A	Del_10q26.3	0.963	1
CDH1	Del_12q24.31	0.963	1
EYS	PTEN	0.963	1
GPS2	Del_6p25.3	0.963	1
ICOSLG	KRAS	0.963	1
ICOSLG	RUFY1	0.963	1
ICOSLG	SP3	0.963	1
ICOSLG	TCP11	0.963	1
IL1RAP	NCDN	0.963	1
IL1RAP	PAX2	0.963	1
IL1RAP	RAB42	0.963	1
IL1RAP	ZBTB7C	0.963	1
IL1RAP	ZNF362	0.963	1
IL1RAP	17p-Del	0.963	1
IRS4	Amp_12q15	0.963	1
KCNN3	PAX2	0.963	1
KCNN3	RAB42	0.963	1
KCNN3	ZBTB7C	0.963	1
KCNN3	ZNF362	0.963	1
KRAS	SP3	0.963	1
KRAS	TCP11	0.963	1
MLL3	NLGN3	0.963	1
MUC6	Amp_13q34	0.963	1
NCDN	TBL1XR1	0.963	1
NCDN	VCPIP1	0.963	1
NCOR1	TPP2	0.963	1
PAX2	TBL1XR1	0.963	1
PAX2	VCPIP1	0.963	1
RAB42	TBL1XR1	0.963	1
RAB42	VCPIP1	0.963	1
RBMX	5q-Del	0.963	1
RUFY1	SP3	0.963	1
SMAD2	Del_7p22.3	0.963	1
SP3	TCP11	0.963	1
TBL1XR1	ZBTB7C	0.963	1
TBL1XR1	ZNF362	0.963	1
USP36	Del_10q26.3	0.963	1
VCPIP1	ZNF362	0.963	1
5p-Amp	Amp_19q12	0.963	1
7p-Amp	Del_19p13.3	0.963	1
8q-Amp	Amp_1q21.3	0.963	1
17q-Del	Amp_6q21	0.963	1
8p-Del	Amp_6p23	0.963	1
Amp_11q13.3	Del_10q26.3	0.963	1
Amp_12q15	Del_4q35.1	0.963	1
Amp_19q13.42	Del_21q11.2	0.963	1
ACTL6B	7q-Amp	0.964	1
AQP12A	Amp_14q21.1	0.964	1
C17orf95	TFE3	0.964	1
C17orf95	ZFP36L2	0.964	1
CDC42EP1	SMAD2	0.964	1
CDC42EP1	SMAD4	0.964	1
CDC42EP1	ZFP36L2	0.964	1
CTCF	Del_2q37.3	0.964	1
FGFR2	NF1	0.964	1
FOXA1	RBMX	0.964	1
GPRIN2	TBX3	0.964	1
GPS2	SPEN	0.964	1
GPS2	7q-Amp	0.964	1
ICOSLG	1p-Del	0.964	1
IRS4	NF1	0.964	1
MYB	16p-Amp	0.964	1
NBPF9	SMAD2	0.964	1
NBPF9	SMAD4	0.964	1
NBPF9	TFE3	0.964	1
NBPF9	ZFP36L2	0.964	1
NCDN	Del_2q37.3	0.964	1
NCOR1	Del_17p12	0.964	1
NF1	NLGN3	0.964	1
RUFY1	1p-Del	0.964	1
SPEN	1q-Del	0.964	1
TBX3	Del_16q24.3	0.964	1
TCP11	Amp_14q21.1	0.964	1
TFE3	Del_4q35.1	0.964	1
7p-Amp	Amp_19q12	0.964	1
8p-Amp	Del_1p36.13	0.964	1
16p-Del	Amp_12q15	0.964	1
16q-Del	Del_7p22.3	0.964	1
16q-Del	Del_9q34.2	0.964	1
17p-Del	Amp_6q21	0.964	1
8p-Del	Del_7q36.1	0.964	1
9q-Del	Del_21q11.2	0.964	1
Amp_6p23	Del_9q21.11	0.964	1
Amp_17q12	Del_19q13.32	0.964	1
Del_20p13	Del_21q11.2	0.964	1
ACTL6B	Amp_8p11.21	0.965	1
ACTL6B	Del_22q13.32	0.965	1
AQP12A	Del_12q23.1	0.965	1
ARID1A	Del_11q23.3	0.965	1
C17orf95	Amp_15q26.3	0.965	1
CDC42EP1	Amp_15q26.3	0.965	1
CDKN1B	Del_16q24.3	0.965	1
EYS	MUC6	0.965	1
EYS	PIK3R1	0.965	1
ICOSLG	Del_12q23.1	0.965	1
ICOSLG	Del_12q24.31	0.965	1
KCNN3	Del_1p36.13	0.965	1
NBPF9	Amp_15q26.3	0.965	1
NCDN	Del_9q34.2	0.965	1
PAX2	Del_9q34.2	0.965	1
RB1	Del_10q23.31	0.965	1
RUFY1	Del_12q24.31	0.965	1
SF3B1	7p-Amp	0.965	1
TCP11	Del_12q24.31	0.965	1
ZFP36L1	8p-Amp	0.965	1
ZFP36L2	Del_22q13.32	0.965	1
16q-Del	Del_12q24.31	0.965	1
18p-Del	Del_5q21.3	0.965	1
1q-Del	Del_16q24.3	0.965	1
22q-Del	Del_12q23.1	0.965	1
Amp_1q21.3	Del_1p22.1	0.965	1
Amp_10q22.3	Amp_15q26.3	0.965	1
Amp_12p13.33	Del_7p22.3	0.965	1
Amp_14q21.1	Del_1p36.13	0.965	1
Amp_17q23.1	Amp_19p13.12	0.965	1
EYS	Del_5q21.3	0.966	1
MED23	Del_16q24.3	0.966	1
MYB	1q-Amp	0.966	1
PTPN22	Del_12p13.1	0.966	1
RB1	Del_20p13	0.966	1
RBMX	5p-Amp	0.966	1
RBMX	Amp_6q21	0.966	1
SMAD4	Amp_20q13.2	0.966	1
TFE3	Amp_19p13.12	0.966	1
15q-Del	Del_18q23	0.966	1
9q-Del	Del_18q23	0.966	1
Amp_6q21	Amp_12q15	0.966	1
Amp_19q13.42	Del_7p22.3	0.966	1
Del_6p25.3	Del_12q23.1	0.966	1
ARID1A	IRS4	0.967	1
ARID1A	NLGN3	0.967	1
ARID1A	Del_21q11.2	0.967	1
CASZ1	CBFB	0.967	1
CBFB	RBMX	0.967	1
ERBB2	KDM6A	0.967	1
ERBB2	ZMYM3	0.967	1
FBXW7	RB1	0.967	1
FGFR2	9q-Del	0.967	1
HRNR	Amp_4q13.3	0.967	1
IL1RAP	MAP2K4	0.967	1
KCNN3	Amp_8q24.21	0.967	1
MAP2K4	NCOR1	0.967	1
MED23	22q-Del	0.967	1
MUC6	22q-Del	0.967	1
NCDN	TPP2	0.967	1
NCDN	USP36	0.967	1
NCDN	ZFP36L1	0.967	1
NF1	7p-Amp	0.967	1
PAX2	TPP2	0.967	1
PAX2	USP36	0.967	1
PAX2	ZFP36L1	0.967	1
PIK3R1	TP53	0.967	1
RAB42	TPP2	0.967	1
RAB42	USP36	0.967	1
RAB42	ZFP36L1	0.967	1
RB1	ZMYM3	0.967	1
RB1	Del_10q26.3	0.967	1
SMAD2	Amp_11q14.1	0.967	1
TGS1	Amp_8p11.23	0.967	1
TPP2	ZBTB7C	0.967	1
TPP2	ZNF362	0.967	1
TPP2	16p-Del	0.967	1
USP36	ZBTB7C	0.967	1
USP36	ZNF362	0.967	1
VCPIP1	Amp_8q24.21	0.967	1
ZBTB7C	ZFP36L1	0.967	1
ZBTB7C	Amp_11q13.3	0.967	1
ZFP36L1	ZNF362	0.967	1
1q-Amp	7q-Amp	0.967	1
15q-Del	Amp_12q15	0.967	1
16p-Del	Amp_6p23	0.967	1
18q-Del	Del_5q11.2	0.967	1
4q-Del	Del_16q24.3	0.967	1
8p-Del	Amp_4q13.3	0.967	1
Amp_6q21	Amp_11q14.1	0.967	1
Amp_8p11.23	Amp_19p13.12	0.967	1
Amp_8p11.23	Del_2q37.3	0.967	1
Amp_11q13.3	Del_2q37.3	0.967	1
Amp_12q15	Del_20p13	0.967	1
Amp_14q21.1	Del_12p13.1	0.967	1
Amp_15q26.3	Del_12q24.31	0.967	1
Del_11p15.5	Del_16q24.3	0.967	1
Del_11q25	Del_21q11.2	0.967	1
Del_12q23.1	Del_22q13.32	0.967	1
ACTL6B	MAP3K1	0.968	1
ACTL6B	4q-Del	0.968	1
AQP12A	Del_17q21.31	0.968	1
CDC42EP1	TP53	0.968	1
CDH1	TFE3	0.968	1
CDKN1B	RUNX1	0.968	1
MED23	Del_12q24.31	0.968	1
NBPF9	Del_6q15	0.968	1
NCDN	Del_6p25.3	0.968	1
PAX2	Del_6p25.3	0.968	1
PTPN22	RUNX1	0.968	1
PTPN22	4q-Del	0.968	1
RB1	4p-Del	0.968	1
RBMX	4p-Del	0.968	1
RUFY1	Del_18q23	0.968	1
TCP11	Del_18q23	0.968	1
17q-Amp	Amp_15q26.3	0.968	1
8q-Amp	Amp_12p13.33	0.968	1
8q-Amp	Del_11q23.3	0.968	1
17q-Del	Amp_3p25.1	0.968	1
1p-Del	Del_11p15.5	0.968	1
1q-Del	4q-Del	0.968	1
9q-Del	Amp_8q24.21	0.968	1
Amp_3p25.1	Amp_11q13.3	0.968	1
Amp_8p11.21	Del_6q27	0.968	1
Amp_13q34	Del_9q21.11	0.968	1
ACTL6B	16q-Del	0.969	1
AQP12A	C17orf95	0.969	1
AQP12A	CDC42EP1	0.969	1
AQP12A	NBPF9	0.969	1
ARID1A	MLL3	0.969	1
ARID1A	Del_8p23.2	0.969	1
C17orf95	ICOSLG	0.969	1
C17orf95	TCP11	0.969	1
CDC42EP1	ICOSLG	0.969	1
CDC42EP1	KRAS	0.969	1
CDC42EP1	RUFY1	0.969	1
CDC42EP1	TCP11	0.969	1
EYS	FRMPD2	0.969	1
EYS	5q-Del	0.969	1
FOXA1	TGS1	0.969	1
FRMPD2	8p-Amp	0.969	1
GPS2	16q-Del	0.969	1
HRNR	IL1RAP	0.969	1
ICOSLG	NBPF9	0.969	1
KCNN3	Del_2q37.3	0.969	1
KRAS	NBPF9	0.969	1
NBPF9	RUFY1	0.969	1
NBPF9	SP3	0.969	1
NBPF9	TCP11	0.969	1
NBPF9	5q-Del	0.969	1
NCDN	Del_12p13.1	0.969	1
PIK3R1	Del_17p12	0.969	1
PTEN	TPP2	0.969	1
RB1	16p-Del	0.969	1
SMAD4	Del_4p16.3	0.969	1
TAF1L	4q-Del	0.969	1
TFE3	Del_4p16.3	0.969	1
USP36	Del_11q25	0.969	1
17q-Amp	Del_6q27	0.969	1
20q-Amp	Del_10q23.31	0.969	1
11p-Del	Del_20p13	0.969	1
11q-Del	Amp_12q15	0.969	1
11q-Del	Del_2q37.3	0.969	1
16q-Del	1q-Del	0.969	1
4p-Del	Amp_4q13.3	0.969	1
Del_12q24.31	Del_19p13.3	0.969	1
ACTL6B	TBX3	0.97	1
AQP12A	Del_9p23	0.97	1
ARID1A	Amp_1q44	0.97	1
C17orf95	Del_17p12	0.97	1
CDC42EP1	Del_6q27	0.97	1
CDH1	TAF1L	0.97	1
CDKN1B	TBX3	0.97	1
GATA3	Amp_15q26.3	0.97	1
HRNR	NCOR1	0.97	1
KCNN3	Del_9q34.2	0.97	1
MAP2K4	8p-Amp	0.97	1
NCDN	Amp_1q44	0.97	1
NF1	PTPN22	0.97	1
NF1	1q-Del	0.97	1
PTEN	Del_18q23	0.97	1
RAB42	Amp_1q44	0.97	1
RUNX1	Amp_1q44	0.97	1
SMAD4	17q-Amp	0.97	1
SMAD4	Amp_4q13.3	0.97	1
TAF1L	Amp_10q22.3	0.97	1
TFE3	17q-Amp	0.97	1
USP36	Del_11q13.1	0.97	1
ZBTB7C	Amp_1q44	0.97	1
ZFP36L2	17q-Amp	0.97	1
ZMYM3	16q-Del	0.97	1
11p-Del	18q-Del	0.97	1
17q-Del	Amp_13q34	0.97	1
18q-Del	Amp_12p13.33	0.97	1
18q-Del	Amp_17q12	0.97	1
18q-Del	Del_9q34.2	0.97	1
5q-Del	Del_11q13.1	0.97	1
8p-Del	Del_6p25.3	0.97	1
9p-Del	Amp_12q15	0.97	1
9q-Del	Del_19q13.32	0.97	1
Amp_3p25.1	Del_13q14.2	0.97	1
Amp_10q22.3	Del_6p25.3	0.97	1
Amp_14q21.1	Del_19q13.32	0.97	1
Amp_19p13.12	Del_4p16.3	0.97	1
Del_1p36.13	Del_12q24.31	0.97	1
Del_12p13.1	Del_12q23.1	0.97	1
Del_12p13.1	Del_12q24.31	0.97	1
CBFB	TGS1	0.971	1
CDC42EP1	1q-Amp	0.971	1
FRMPD2	PIK3CA	0.971	1
MAP3K1	NCDN	0.971	1
NBPF9	1q-Amp	0.971	1
NCDN	SMAD2	0.971	1
NCDN	SMAD4	0.971	1
NCDN	TFE3	0.971	1
NCDN	ZFP36L2	0.971	1
NCDN	4q-Del	0.971	1
PAX2	SMAD2	0.971	1
PAX2	SMAD4	0.971	1
PAX2	TFE3	0.971	1
PAX2	ZFP36L2	0.971	1
PAX2	4q-Del	0.971	1
PAX2	Del_22q13.32	0.971	1
RAB42	SMAD2	0.971	1
RAB42	SMAD4	0.971	1
RAB42	TFE3	0.971	1
RAB42	ZFP36L2	0.971	1
RAB42	Amp_8p11.21	0.971	1
RUFY1	17p-Del	0.971	1
SMAD2	ZBTB7C	0.971	1
SMAD2	ZNF362	0.971	1
SMAD4	ZBTB7C	0.971	1
SMAD4	ZNF362	0.971	1
SPEN	TBL1XR1	0.971	1
TFE3	ZBTB7C	0.971	1
USP36	Del_5q21.3	0.971	1
ZFP36L2	ZNF362	0.971	1
ZNF362	4q-Del	0.971	1
16p-Amp	Amp_20q13.2	0.971	1
1q-Amp	18q-Del	0.971	1
8p-Amp	Amp_19q12	0.971	1
13q-Del	Amp_1q21.3	0.971	1
14q-Del	Del_12p13.1	0.971	1
17q-Del	1q-Del	0.971	1
Amp_3p25.1	Amp_13q34	0.971	1
Amp_3q26.32	Del_12q24.31	0.971	1
Amp_10p15.1	Del_7p22.3	0.971	1
Amp_14q21.1	Del_9p21.3	0.971	1
Amp_19q12	Del_12p13.1	0.971	1
Amp_20q13.2	Del_3p21.31	0.971	1
Del_12p13.1	Del_21q11.2	0.971	1
ACTL6B	MLL3	0.972	1
AQP12A	Del_16q24.3	0.972	1
ARID1A	CDKN1B	0.972	1
ERBB2	6q-Del	0.972	1
FBXW7	Amp_3p25.1	0.972	1
FBXW7	Del_7p22.3	0.972	1
FGFR2	Amp_15q26.3	0.972	1
FGFR2	Del_4q35.1	0.972	1
GATA3	MLL3	0.972	1
GATA3	Amp_12q15	0.972	1
ICOSLG	7p-Amp	0.972	1
IRS4	Amp_15q26.3	0.972	1
NBPF9	Del_1p36.13	0.972	1
NCDN	Amp_12p13.33	0.972	1
NCOR1	SMAD4	0.972	1
PAX2	Amp_12p13.33	0.972	1
PAX2	Amp_19q12	0.972	1
PAX2	Del_9q21.11	0.972	1
PAX2	Del_21q11.2	0.972	1
RAB42	Amp_19q12	0.972	1
SMAD2	Amp_1p22.3	0.972	1
ZNF362	Amp_12p13.33	0.972	1
ZNF362	Amp_19q12	0.972	1
ZNF362	Del_21q11.2	0.972	1
7p-Amp	Amp_1q21.3	0.972	1
11p-Del	Amp_8p11.23	0.972	1
11p-Del	Amp_20q13.2	0.972	1
18p-Del	Del_19q13.32	0.972	1
18q-Del	Amp_1q21.3	0.972	1
1q-Del	Amp_12q15	0.972	1
9q-Del	Amp_8p11.21	0.972	1
APC	SF3B1	0.973	1
ARID1A	11q-Del	0.973	1
EYS	HRNR	0.973	1
FBXW7	TAF1L	0.973	1
ICOSLG	Del_7p22.3	0.973	1
KCNN3	Del_6p25.3	0.973	1
KDM6A	TAF1L	0.973	1
MLL3	ZNF362	0.973	1
MYB	Amp_10p15.1	0.973	1
MYH9	SF3B1	0.973	1
NBPF9	Amp_13q34	0.973	1
NCDN	Amp_1q21.3	0.973	1
NCDN	Del_7q36.1	0.973	1
PAX2	8p-Del	0.973	1
RAB42	Amp_12q15	0.973	1
RAB42	Del_7q36.1	0.973	1
RUFY1	Del_7p22.3	0.973	1
RUFY1	Del_19p13.3	0.973	1
SMAD4	Amp_10p15.1	0.973	1
SP3	Amp_3p25.1	0.973	1
SP3	Del_7p22.3	0.973	1
SP3	Del_19p13.3	0.973	1
TCP11	Amp_3p25.1	0.973	1
TP53	VCPIP1	0.973	1
VCPIP1	Amp_1q21.3	0.973	1
ZFP36L2	22q-Del	0.973	1
ZNF362	Amp_12q15	0.973	1
20p-Amp	Del_11p15.5	0.973	1
5p-Amp	Del_4p16.3	0.973	1
5p-Amp	Del_5q11.2	0.973	1
7q-Amp	Amp_10p15.1	0.973	1
11p-Del	Del_19q13.32	0.973	1
11q-Del	Amp_1q44	0.973	1
18q-Del	Del_21q11.2	0.973	1
4q-Del	Del_6q15	0.973	1
6q-Del	Del_1p22.1	0.973	1
Amp_11p13	Del_11q13.1	0.973	1
Amp_12q15	Del_19p13.3	0.973	1
Amp_17q12	Del_3p21.31	0.973	1
Amp_17q12	Del_19p13.3	0.973	1
Del_5q11.2	Del_21q11.2	0.973	1
Del_18q23	Del_21q11.2	0.973	1
C17orf95	CDC42EP1	0.974	1
C17orf95	NBPF9	0.974	1
C17orf95	Del_9p21.3	0.974	1
CDC42EP1	NBPF9	0.974	1
CTCF	16p-Amp	0.974	1
EYS	MYB	0.974	1
EYS	TGS1	0.974	1
FOXA1	IRS4	0.974	1
GPRIN2	16p-Amp	0.974	1
ICOSLG	Amp_8p11.23	0.974	1
NBPF9	Del_3p21.31	0.974	1
NLGN3	16p-Amp	0.974	1
PIK3R1	Del_17q21.31	0.974	1
RUNX1	TBL1XR1	0.974	1
RUNX1	VCPIP1	0.974	1
SF3B1	16p-Amp	0.974	1
SMAD4	1q-Amp	0.974	1
SMAD4	Amp_17q23.1	0.974	1
TAF1L	17p-Del	0.974	1
TP53	Del_9p21.3	0.974	1
5p-Amp	Del_19p13.3	0.974	1
7p-Amp	8q-Amp	0.974	1
8p-Amp	6q-Del	0.974	1
8p-Amp	Del_19p13.3	0.974	1
11q-Del	Amp_11p13	0.974	1
15q-Del	Amp_1q44	0.974	1
15q-Del	Amp_19q13.42	0.974	1
Amp_1p22.3	Del_18q23	0.974	1
Amp_6q21	Del_19p13.3	0.974	1
Amp_10q22.3	Del_17q21.31	0.974	1
Amp_11p13	Del_6q15	0.974	1
Amp_13q34	Amp_19q13.42	0.974	1
Amp_19q13.42	Del_20p13	0.974	1
ACTL6B	22q-Del	0.975	1
ACTL6B	Del_20p13	0.975	1
APC	MAP3K1	0.975	1
AQP12A	NCDN	0.975	1
AQP12A	PAX2	0.975	1
AQP12A	RAB42	0.975	1
AQP12A	ZBTB7C	0.975	1
AQP12A	ZNF362	0.975	1
AQP12A	Del_11p15.5	0.975	1
ARID1A	Amp_8p11.21	0.975	1
CTCF	MAP3K1	0.975	1
ERBB2	RBMX	0.975	1
HRNR	TPP2	0.975	1
ICOSLG	NCDN	0.975	1
ICOSLG	PAX2	0.975	1
ICOSLG	RAB42	0.975	1
ICOSLG	ZBTB7C	0.975	1
ICOSLG	ZNF362	0.975	1
ICOSLG	Amp_19p13.12	0.975	1
ICOSLG	Del_11p15.5	0.975	1
KRAS	NCDN	0.975	1
KRAS	PAX2	0.975	1
KRAS	RAB42	0.975	1
KRAS	ZBTB7C	0.975	1
KRAS	ZNF362	0.975	1
MAP3K1	MYH9	0.975	1
NBPF9	Amp_14q21.1	0.975	1
NCDN	RUFY1	0.975	1
NCDN	SP3	0.975	1
NCDN	TCP11	0.975	1
PAX2	RUFY1	0.975	1
PAX2	SP3	0.975	1
PAX2	TCP11	0.975	1
PAX2	9q-Del	0.975	1
PAX2	Del_20p13	0.975	1
PTEN	Del_9p21.3	0.975	1
PTPN22	Del_20p13	0.975	1
RAB42	RUFY1	0.975	1
RAB42	SP3	0.975	1
RAB42	TCP11	0.975	1
RB1	RBMX	0.975	1
RUFY1	ZNF362	0.975	1
SF3B1	Amp_1q44	0.975	1
SMAD2	16p-Del	0.975	1
SMAD2	9p-Del	0.975	1
SP3	ZBTB7C	0.975	1
SP3	ZNF362	0.975	1
TBL1XR1	Del_12p13.1	0.975	1
TCP11	ZBTB7C	0.975	1
TCP11	ZNF362	0.975	1
TP53	20q-Amp	0.975	1
TP53	Amp_4q13.3	0.975	1
TP53	Amp_15q26.3	0.975	1
VCPIP1	Del_12p13.1	0.975	1
ZBTB7C	Del_20p13	0.975	1
ZFP36L2	16p-Del	0.975	1
ZNF362	Del_20p13	0.975	1
8p-Amp	11q-Del	0.975	1
8q-Amp	Del_6q15	0.975	1
13q-Del	Del_12q24.31	0.975	1
15q-Del	1q-Del	0.975	1
16p-Del	Amp_10p15.1	0.975	1
16p-Del	Del_19q13.32	0.975	1
17q-Del	6q-Del	0.975	1
17q-Del	Amp_15q26.3	0.975	1
18p-Del	Amp_20q13.2	0.975	1
1q-Del	Del_20p13	0.975	1
9q-Del	Amp_20q13.2	0.975	1
9q-Del	Del_16q24.3	0.975	1
Amp_8q24.21	Amp_11q14.1	0.975	1
Amp_10p15.1	Del_3p21.31	0.975	1
Amp_12p13.33	Del_9q21.11	0.975	1
Amp_17q12	Del_7p22.3	0.975	1
Amp_19p13.12	Del_21q11.2	0.975	1
Del_9p21.3	Del_12q24.31	0.975	1
APC	17q-Amp	0.976	1
CDH1	FGFR2	0.976	1
FBXW7	MYH9	0.976	1
FBXW7	Del_6p25.3	0.976	1
FGFR2	17p-Del	0.976	1
FOXA1	NF1	0.976	1
GATA3	SMAD4	0.976	1
GPRIN2	17p-Del	0.976	1
KDM6A	SF3B1	0.976	1
MYH9	ZMYM3	0.976	1
NF1	VCPIP1	0.976	1
PIK3R1	TAF1L	0.976	1
PTEN	SMAD2	0.976	1
PTEN	ZFP36L2	0.976	1
PTPN22	Amp_17q23.1	0.976	1
RBMX	Del_5q21.3	0.976	1
SF3B1	17q-Amp	0.976	1
SMAD2	18p-Del	0.976	1
SMAD4	8p-Amp	0.976	1
SMAD4	18p-Del	0.976	1
SMAD4	Amp_8q24.21	0.976	1
TBX3	VCPIP1	0.976	1
TGS1	16q-Del	0.976	1
ZFP36L1	Del_6q27	0.976	1
7p-Amp	Del_9q34.2	0.976	1
8p-Amp	13q-Del	0.976	1
8q-Amp	15q-Del	0.976	1
16q-Del	Del_2q37.3	0.976	1
17p-Del	Amp_8q24.21	0.976	1
18p-Del	Del_6p25.3	0.976	1
6q-Del	Amp_6p23	0.976	1
6q-Del	Del_15q13.1	0.976	1
9p-Del	Amp_3p25.1	0.976	1
Amp_6p23	Del_1p36.13	0.976	1
Amp_11p13	Del_6p25.3	0.976	1
Amp_12q15	Del_11p15.5	0.976	1
Amp_15q26.3	Del_4p16.3	0.976	1
ACTL6B	Del_11p15.5	0.977	1
FGFR2	13q-Del	0.977	1
PAX2	22q-Del	0.977	1
PIK3CA	16p-Amp	0.977	1
PIK3R1	Del_7p22.3	0.977	1
RUFY1	Amp_10q22.3	0.977	1
SMAD2	18q-Del	0.977	1
SMAD4	Amp_1q44	0.977	1
SPEN	TPP2	0.977	1
SPEN	USP36	0.977	1
TAF1L	Del_20p13	0.977	1
ZFP36L1	8q-Amp	0.977	1
ZNF362	22q-Del	0.977	1
16p-Amp	Amp_4q13.3	0.977	1
7p-Amp	16p-Del	0.977	1
18q-Del	Amp_1p22.3	0.977	1
5q-Del	8p-Del	0.977	1
8p-Del	9q-Del	0.977	1
8p-Del	Amp_15q26.3	0.977	1
Del_5q11.2	Del_6q27	0.977	1
APC	MLL3	0.978	1
AQP12A	Del_15q13.1	0.978	1
ARID1A	FOXA1	0.978	1
ARID1A	VCPIP1	0.978	1
ARID1A	Amp_17q12	0.978	1
C17orf95	16q-Del	0.978	1
ERBB2	TGS1	0.978	1
EYS	FGFR2	0.978	1
EYS	IRS4	0.978	1
EYS	NLGN3	0.978	1
EYS	Amp_11q14.1	0.978	1
FGFR2	Amp_11p13	0.978	1
FOXA1	GPS2	0.978	1
FOXA1	PTPN22	0.978	1
GATA3	SPEN	0.978	1
GATA3	Amp_14q21.1	0.978	1
KCNN3	14q-Del	0.978	1
KCNN3	Amp_12p13.33	0.978	1
MYH9	NCOR1	0.978	1
NBPF9	16q-Del	0.978	1
NCOR1	SF3B1	0.978	1
PAX2	Amp_15q26.3	0.978	1
PAX2	Amp_17q23.1	0.978	1
RB1	5q-Del	0.978	1
RUFY1	Del_4q35.1	0.978	1
SMAD4	6q-Del	0.978	1
SP3	17q-Amp	0.978	1
TGS1	18q-Del	0.978	1
TPP2	Del_2q37.3	0.978	1
VCPIP1	Amp_12p13.33	0.978	1
VCPIP1	Amp_19q12	0.978	1
ZFP36L1	Del_2q37.3	0.978	1
5p-Amp	Amp_3q26.32	0.978	1
11p-Del	Amp_10p15.1	0.978	1
14q-Del	8p-Del	0.978	1
18p-Del	8p-Del	0.978	1
18p-Del	Amp_3p25.1	0.978	1
8p-Del	Amp_17q12	0.978	1
9q-Del	Amp_6p23	0.978	1
9q-Del	Amp_17q23.1	0.978	1
Amp_1q44	Amp_10p15.1	0.978	1
Amp_3q26.32	Amp_19q13.42	0.978	1
Amp_6q21	Amp_14q21.1	0.978	1
Amp_10q22.3	Del_5q21.3	0.978	1
Amp_12q15	Amp_14q21.1	0.978	1
Amp_13q34	Del_9q34.2	0.978	1
Amp_13q34	Del_13q14.2	0.978	1
Amp_14q21.1	Amp_19q13.42	0.978	1
Amp_17q12	Del_6q27	0.978	1
Amp_17q23.1	Del_10q26.3	0.978	1
Amp_20q13.2	Del_15q13.1	0.978	1
Del_7p22.3	Del_12q23.1	0.978	1
Del_7q36.1	Del_17q21.31	0.978	1
ACTL6B	Amp_15q26.3	0.979	1
APC	MED23	0.979	1
APC	MUC6	0.979	1
AQP12A	Amp_11q14.1	0.979	1
ARID1A	1q-Amp	0.979	1
C17orf95	NCDN	0.979	1
C17orf95	PAX2	0.979	1
C17orf95	RAB42	0.979	1
C17orf95	ZBTB7C	0.979	1
C17orf95	ZNF362	0.979	1
CBFB	TBX3	0.979	1
CDC42EP1	NCDN	0.979	1
CDC42EP1	PAX2	0.979	1
CDC42EP1	RAB42	0.979	1
CDC42EP1	ZBTB7C	0.979	1
CDC42EP1	ZNF362	0.979	1
CDH1	Amp_1q21.3	0.979	1
FBXW7	KDM6A	0.979	1
GPRIN2	5p-Amp	0.979	1
GPRIN2	Del_17p12	0.979	1
ICOSLG	16p-Amp	0.979	1
IRS4	Amp_3q26.32	0.979	1
IRS4	Amp_6q21	0.979	1
KRAS	NCOR1	0.979	1
KRAS	16p-Amp	0.979	1
MLL3	TBL1XR1	0.979	1
MLL3	VCPIP1	0.979	1
MUC6	SF3B1	0.979	1
NBPF9	NCDN	0.979	1
NBPF9	PAX2	0.979	1
NBPF9	RAB42	0.979	1
NBPF9	ZBTB7C	0.979	1
NBPF9	ZNF362	0.979	1
NCOR1	RUFY1	0.979	1
TAF1L	Del_10q26.3	0.979	1
TBL1XR1	Del_22q13.32	0.979	1
TGS1	Amp_8p11.21	0.979	1
TGS1	Del_12q24.31	0.979	1
VCPIP1	Del_18q23	0.979	1
16p-Amp	Amp_6p23	0.979	1
17q-Amp	Del_13q14.2	0.979	1
20q-Amp	Del_11p15.5	0.979	1
7q-Amp	8p-Amp	0.979	1
8q-Amp	Del_1p36.13	0.979	1
8q-Amp	Del_6q27	0.979	1
13q-Del	Del_7q36.1	0.979	1
16p-Del	Amp_3p25.1	0.979	1
16q-Del	18p-Del	0.979	1
1q-Del	Amp_15q26.3	0.979	1
6q-Del	Amp_1p22.3	0.979	1
Amp_11q14.1	Del_2q37.3	0.979	1
Amp_11q14.1	Del_14q24.1	0.979	1
Amp_12q15	Del_11q23.3	0.979	1
Amp_20q13.2	Del_10q23.31	0.979	1
ACTL6B	Del_4q35.1	0.98	1
AQP12A	Del_8p23.2	0.98	1
ARID1A	Amp_10q22.3	0.98	1
CASZ1	TAF1L	0.98	1
CBFB	CDKN1B	0.98	1
CBFB	GPS2	0.98	1
CBFB	Amp_1p22.3	0.98	1
GATA3	9q-Del	0.98	1
GPRIN2	Amp_10p15.1	0.98	1
KDM6A	MAP3K1	0.98	1
MAP2K4	SMAD2	0.98	1
MAP2K4	TFE3	0.98	1
MAP2K4	ZFP36L2	0.98	1
NBPF9	7p-Amp	0.98	1
PTEN	SPEN	0.98	1
RUNX1	TPP2	0.98	1
USP36	11q-Del	0.98	1
VCPIP1	Amp_20q13.2	0.98	1
16p-Amp	22q-Del	0.98	1
13q-Del	Amp_3p25.1	0.98	1
17q-Del	Amp_10q22.3	0.98	1
1q-Del	Del_15q13.1	0.98	1
Amp_1q21.3	Amp_3p25.1	0.98	1
Amp_10q22.3	Amp_19q12	0.98	1
Amp_12q15	Del_9q21.11	0.98	1
Amp_19q12	Del_2q37.3	0.98	1
Amp_19q12	Del_21q11.2	0.98	1
Del_4q35.1	Del_16q24.3	0.98	1
Del_5q11.2	Del_22q13.32	0.98	1
Del_6q15	Del_21q11.2	0.98	1
ARID1A	Amp_11q14.1	0.981	1
ERBB2	SPEN	0.981	1
EYS	NF1	0.981	1
EYS	TBX3	0.981	1
EYS	Del_5q11.2	0.981	1
EYS	Del_6p25.3	0.981	1
FBXW7	NCOR1	0.981	1
FBXW7	Amp_12p13.33	0.981	1
FGFR2	1q-Amp	0.981	1
FOXA1	MLL3	0.981	1
GATA3	Del_16q24.3	0.981	1
HRNR	SMAD2	0.981	1
HRNR	TFE3	0.981	1
ICOSLG	Del_5q11.2	0.981	1
KCNN3	8p-Del	0.981	1
KDM6A	MUC6	0.981	1
KDM6A	NCOR1	0.981	1
KRAS	16p-Del	0.981	1
MED23	ZMYM3	0.981	1
MYH9	Amp_1p22.3	0.981	1
NCOR1	NF1	0.981	1
NCOR1	TBX3	0.981	1
NCOR1	ZMYM3	0.981	1
NF1	TPP2	0.981	1
NF1	USP36	0.981	1
RUFY1	16p-Del	0.981	1
RUFY1	Del_4p16.3	0.981	1
SF3B1	16p-Del	0.981	1
SMAD4	Amp_17q12	0.981	1
TBX3	TPP2	0.981	1
TBX3	Amp_1q44	0.981	1
20p-Amp	8p-Del	0.981	1
20p-Amp	Amp_19q12	0.981	1
20q-Amp	Amp_6p23	0.981	1
7p-Amp	Amp_15q26.3	0.981	1
8p-Amp	Del_6q15	0.981	1
18q-Del	Amp_14q21.1	0.981	1
1p-Del	Amp_8p11.21	0.981	1
6q-Del	Amp_20q13.2	0.981	1
9q-Del	Amp_19p13.12	0.981	1
Amp_3p25.1	Del_17p12	0.981	1
Amp_3q26.32	Del_6p25.3	0.981	1
Amp_4q13.3	Del_4p16.3	0.981	1
Amp_10p15.1	Del_8p23.2	0.981	1
Amp_11p13	Del_4q35.1	0.981	1
Amp_15q26.3	Del_17q21.31	0.981	1
Amp_19p13.12	Del_13q14.2	0.981	1
Del_5q11.2	Del_12p13.1	0.981	1
ACTL6B	16p-Amp	0.982	1
ACTL6B	5q-Del	0.982	1
AQP12A	PTEN	0.982	1
ARID1A	TPP2	0.982	1
C17orf95	Del_17q21.31	0.982	1
CASZ1	MYH9	0.982	1
CASZ1	SF3B1	0.982	1
CDKN1B	EYS	0.982	1
ERBB2	FGFR2	0.982	1
ERBB2	IRS4	0.982	1
EYS	GPS2	0.982	1
FGFR2	RB1	0.982	1
FOXA1	IL1RAP	0.982	1
FOXA1	TBL1XR1	0.982	1
FOXA1	Amp_1q44	0.982	1
ICOSLG	PTEN	0.982	1
ICOSLG	Amp_8p11.21	0.982	1
IL1RAP	Del_20p13	0.982	1
KCNN3	15q-Del	0.982	1
KRAS	PTEN	0.982	1
MLL3	Del_21q11.2	0.982	1
NCDN	Amp_6q21	0.982	1
PTEN	SF3B1	0.982	1
PTEN	11p-Del	0.982	1
PTEN	Del_10q26.3	0.982	1
SPEN	TFE3	0.982	1
SPEN	ZFP36L2	0.982	1
TCP11	Amp_8p11.21	0.982	1
ZBTB7C	Amp_11p13	0.982	1
ZMYM3	17q-Del	0.982	1
ZNF362	5p-Amp	0.982	1
ZNF362	Amp_19q13.42	0.982	1
20p-Amp	18q-Del	0.982	1
13q-Del	Amp_11q14.1	0.982	1
16q-Del	Del_17q21.31	0.982	1
1p-Del	6q-Del	0.982	1
8p-Del	Amp_3p25.1	0.982	1
Amp_3p25.1	Amp_11q14.1	0.982	1
Amp_8q24.21	Del_6q15	0.982	1
Amp_10p15.1	Del_1p36.13	0.982	1
Amp_17q12	Del_11q13.1	0.982	1
Amp_19q13.42	Del_17q21.31	0.982	1
Del_9p21.3	Del_21q11.2	0.982	1
ACTL6B	Amp_11p13	0.983	1
APC	17p-Del	0.983	1
AQP12A	8p-Del	0.983	1
C17orf95	Amp_19p13.12	0.983	1
FBXW7	MLL3	0.983	1
ICOSLG	8p-Del	0.983	1
ICOSLG	Amp_1p22.3	0.983	1
KDM6A	MLL3	0.983	1
MED23	Del_12p13.1	0.983	1
MUC6	Del_12p13.1	0.983	1
MYB	Amp_1q21.3	0.983	1
MYH9	17p-Del	0.983	1
NCDN	PAX2	0.983	1
NCDN	RAB42	0.983	1
NCDN	ZBTB7C	0.983	1
NCDN	ZNF362	0.983	1
PAX2	RAB42	0.983	1
PAX2	ZBTB7C	0.983	1
PAX2	Amp_13q34	0.983	1
RAB42	ZBTB7C	0.983	1
RAB42	ZNF362	0.983	1
RB1	Del_1p36.13	0.983	1
SMAD4	13q-Del	0.983	1
TAF1L	TGS1	0.983	1
ZBTB7C	ZNF362	0.983	1
17q-Amp	Amp_6p23	0.983	1
20q-Amp	Del_3p21.31	0.983	1
20q-Amp	Del_9q21.11	0.983	1
11q-Del	17q-Del	0.983	1
15q-Del	16q-Del	0.983	1
15q-Del	18q-Del	0.983	1
15q-Del	Amp_8q24.21	0.983	1
16p-Del	Amp_19p13.12	0.983	1
16p-Del	Del_6q27	0.983	1
16q-Del	Del_7q36.1	0.983	1
1p-Del	Amp_1q44	0.983	1
22q-Del	Amp_19p13.12	0.983	1
4p-Del	Amp_19p13.12	0.983	1
Amp_1q21.3	Del_16q24.3	0.983	1
Amp_3p25.1	Amp_15q26.3	0.983	1
Amp_6q21	Amp_20q13.2	0.983	1
Amp_8p11.21	Del_9q21.11	0.983	1
Amp_8q24.21	Del_17q21.31	0.983	1
Amp_11q14.1	Amp_12p13.33	0.983	1
Amp_12p13.33	Del_10q23.31	0.983	1
Amp_13q34	Del_11p15.5	0.983	1
Amp_19q13.42	Del_15q13.1	0.983	1
Del_6p25.3	Del_7p22.3	0.983	1
Del_6q15	Del_7p22.3	0.983	1
Del_6q27	Del_10q26.3	0.983	1
Del_9p23	Del_12q24.31	0.983	1
ACTL6B	Amp_19q13.42	0.984	1
APC	TGS1	0.984	1
C17orf95	Del_9p23	0.984	1
CASZ1	FBXW7	0.984	1
CASZ1	KDM6A	0.984	1
CASZ1	ZMYM3	0.984	1
FBXW7	RBMX	0.984	1
FBXW7	16p-Del	0.984	1
FRMPD2	KDM6A	0.984	1
GPRIN2	Del_12q23.1	0.984	1
IRS4	Del_12q24.31	0.984	1
MAP3K1	USP36	0.984	1
MLL3	Amp_4q13.3	0.984	1
MLL3	Del_16q24.3	0.984	1
MYH9	TGS1	0.984	1
NF1	16p-Del	0.984	1
PTPN22	Amp_19q13.42	0.984	1
PTPN22	Del_4p16.3	0.984	1
RBMX	ZMYM3	0.984	1
RUFY1	Del_10q23.31	0.984	1
RUNX1	SMAD2	0.984	1
RUNX1	SMAD4	0.984	1
RUNX1	1q-Amp	0.984	1
SF3B1	TGS1	0.984	1
SF3B1	Del_11q23.3	0.984	1
SMAD4	Del_6q15	0.984	1
TBX3	Amp_19q13.42	0.984	1
TP53	Del_9p23	0.984	1
ZFP36L1	Del_9q21.11	0.984	1
20p-Amp	Del_18q23	0.984	1
20q-Amp	Amp_11p13	0.984	1
5p-Amp	Del_10q26.3	0.984	1
13q-Del	Amp_3q26.32	0.984	1
16p-Del	6q-Del	0.984	1
16q-Del	Amp_8p11.21	0.984	1
17q-Del	Del_5q21.3	0.984	1
18q-Del	Del_10q26.3	0.984	1
1q-Del	Del_4p16.3	0.984	1
4p-Del	Amp_11p13	0.984	1
5q-Del	Amp_19q12	0.984	1
5q-Del	Del_21q11.2	0.984	1
6q-Del	Del_12p13.1	0.984	1
8p-Del	Amp_19q13.42	0.984	1
9p-Del	Amp_6p23	0.984	1
Amp_6p23	Del_2q37.3	0.984	1
Amp_6q21	Del_10q26.3	0.984	1
Amp_6q21	Del_13q14.2	0.984	1
Amp_12q15	Del_3p21.31	0.984	1
Amp_17q12	Del_9p21.3	0.984	1
Amp_17q12	Del_21q11.2	0.984	1
Amp_17q23.1	Del_22q13.32	0.984	1
Amp_19p13.12	Del_9q34.2	0.984	1
Del_2q37.3	Del_12q23.1	0.984	1
Del_2q37.3	Del_12q24.31	0.984	1
Del_11q13.1	Del_18q23	0.984	1
Del_16q24.3	Del_18q23	0.984	1
ACTL6B	RB1	0.985	1
ACTL6B	Amp_3q26.32	0.985	1
AQP12A	9p-Del	0.985	1
CDC42EP1	Amp_4q13.3	0.985	1
EYS	VCPIP1	0.985	1
EYS	Amp_10p15.1	0.985	1
FBXW7	PTEN	0.985	1
FBXW7	Amp_3q26.32	0.985	1
FGFR2	TAF1L	0.985	1
GATA3	RUFY1	0.985	1
HRNR	TAF1L	0.985	1
IL1RAP	Amp_15q26.3	0.985	1
IL1RAP	Del_11p15.5	0.985	1
KCNN3	Del_11p15.5	0.985	1
KRAS	MAP2K4	0.985	1
MAP2K4	SPEN	0.985	1
MAP3K1	MUC6	0.985	1
MLL3	TPP2	0.985	1
MLL3	USP36	0.985	1
MUC6	Amp_12p13.33	0.985	1
MUC6	Del_15q13.1	0.985	1
NBPF9	17q-Amp	0.985	1
NBPF9	Amp_4q13.3	0.985	1
NF1	SMAD4	0.985	1
NF1	ZFP36L2	0.985	1
NLGN3	Del_3p21.31	0.985	1
PAX2	Del_12q23.1	0.985	1
PIK3R1	Del_15q13.1	0.985	1
PTEN	ZMYM3	0.985	1
PTEN	18q-Del	0.985	1
RB1	1q-Del	0.985	1
RB1	Amp_14q21.1	0.985	1
RB1	Del_15q13.1	0.985	1
RUFY1	4p-Del	0.985	1
SP3	Del_10q26.3	0.985	1
TBL1XR1	22q-Del	0.985	1
TBL1XR1	Del_16q24.3	0.985	1
TBX3	TFE3	0.985	1
TP53	Del_9q21.11	0.985	1
USP36	14q-Del	0.985	1
USP36	17q-Del	0.985	1
USP36	Del_21q11.2	0.985	1
ZBTB7C	Del_6q15	0.985	1
ZNF362	Del_6q15	0.985	1
ZNF362	Del_12q23.1	0.985	1
17q-Amp	Del_6q15	0.985	1
7q-Amp	8q-Amp	0.985	1
8p-Amp	Amp_11p13	0.985	1
16p-Del	Del_12p13.1	0.985	1
22q-Del	Amp_17q23.1	0.985	1
4p-Del	Del_6q27	0.985	1
5q-Del	Del_7q36.1	0.985	1
6q-Del	Del_1p36.13	0.985	1
8p-Del	Amp_14q21.1	0.985	1
Amp_1p22.3	Del_10q26.3	0.985	1
Amp_1q44	Del_11q25	0.985	1
Amp_6p23	Del_9q34.2	0.985	1
Amp_6q21	Del_9p23	0.985	1
Amp_8p11.23	Amp_11p13	0.985	1
Amp_8p11.23	Del_9p21.3	0.985	1
Amp_8q24.21	Del_19q13.32	0.985	1
Amp_10p15.1	Amp_20q13.2	0.985	1
Amp_10q22.3	Del_14q24.1	0.985	1
Amp_11q13.3	Del_6q27	0.985	1
Amp_11q13.3	Del_18q23	0.985	1
Amp_11q14.1	Del_21q11.2	0.985	1
Amp_14q21.1	Del_19p13.3	0.985	1
Amp_15q26.3	Del_6p25.3	0.985	1
Amp_17q23.1	Del_12q23.1	0.985	1
Amp_17q23.1	Del_19q13.32	0.985	1
Del_3p21.31	Del_11q13.1	0.985	1
Del_7p22.3	Del_19q13.32	0.985	1
Del_9p21.3	Del_11q13.1	0.985	1
Del_9p21.3	Del_16q24.3	0.985	1
AQP12A	HRNR	0.986	1
AQP12A	22q-Del	0.986	1
ARID1A	SMAD2	0.986	1
ARID1A	TFE3	0.986	1
ARID1A	ZFP36L2	0.986	1
ARID1A	Amp_17q23.1	0.986	1
CASZ1	PIK3R1	0.986	1
CBFB	FOXA1	0.986	1
CDC42EP1	NCOR1	0.986	1
CDC42EP1	8q-Amp	0.986	1
ERBB2	NF1	0.986	1
ERBB2	TBX3	0.986	1
FOXA1	USP36	0.986	1
FRMPD2	MUC6	0.986	1
GATA3	16q-Del	0.986	1
GATA3	Amp_1q44	0.986	1
GPS2	17p-Del	0.986	1
HRNR	KRAS	0.986	1
HRNR	RUFY1	0.986	1
MED23	RBMX	0.986	1
MUC6	RBMX	0.986	1
MUC6	Del_6q27	0.986	1
MYB	ZMYM3	0.986	1
MYH9	16q-Del	0.986	1
PAX2	Del_8p23.2	0.986	1
PIK3R1	RBMX	0.986	1
RBMX	Del_19p13.3	0.986	1
SP3	22q-Del	0.986	1
TCP11	6q-Del	0.986	1
TFE3	Del_6q27	0.986	1
16p-Amp	Amp_19q13.42	0.986	1
8p-Amp	Del_13q14.2	0.986	1
13q-Del	Amp_1p22.3	0.986	1
16p-Del	Amp_19q13.42	0.986	1
16p-Del	Del_1p36.13	0.986	1
17p-Del	1q-Del	0.986	1
17q-Del	Del_6p25.3	0.986	1
17q-Del	Del_6q27	0.986	1
1p-Del	Del_17p12	0.986	1
4q-Del	Del_12p13.1	0.986	1
9p-Del	Del_21q11.2	0.986	1
Amp_1q21.3	Del_15q13.1	0.986	1
Amp_13q34	Del_17q21.31	0.986	1
Amp_17q12	Del_7q36.1	0.986	1
Amp_17q12	Del_12p13.1	0.986	1
Del_9q21.11	Del_16q24.3	0.986	1
APC	FGFR2	0.987	1
APC	HRNR	0.987	1
AQP12A	SPEN	0.987	1
AQP12A	7q-Amp	0.987	1
CBFB	TPP2	0.987	1
CDH1	MED23	0.987	1
EYS	MLL3	0.987	1
EYS	Del_21q11.2	0.987	1
FBXW7	Amp_10p15.1	0.987	1
FOXA1	11q-Del	0.987	1
KCNN3	Del_4q35.1	0.987	1
KRAS	SPEN	0.987	1
MED23	Del_7q36.1	0.987	1
MLL3	PIK3R1	0.987	1
MLL3	20q-Amp	0.987	1
MUC6	16p-Del	0.987	1
MUC6	Del_22q13.32	0.987	1
MYH9	NLGN3	0.987	1
NBPF9	16p-Del	0.987	1
NBPF9	Amp_8q24.21	0.987	1
NF1	Del_10q26.3	0.987	1
PAX2	Del_19q13.32	0.987	1
PIK3R1	16p-Del	0.987	1
PIK3R1	Amp_12q15	0.987	1
RBMX	Del_11p15.5	0.987	1
RBMX	Del_12p13.1	0.987	1
SPEN	TCP11	0.987	1
ZFP36L1	15q-Del	0.987	1
ZNF362	Del_19q13.32	0.987	1
20q-Amp	Del_10q26.3	0.987	1
20q-Amp	Del_11q13.1	0.987	1
20q-Amp	Del_11q25	0.987	1
5p-Amp	Amp_11q14.1	0.987	1
7p-Amp	Amp_1p22.3	0.987	1
8p-Amp	Amp_19q13.42	0.987	1
16p-Del	Del_18q23	0.987	1
18p-Del	Del_6q27	0.987	1
5q-Del	Amp_8p11.21	0.987	1
5q-Del	Del_11q23.3	0.987	1
9p-Del	Amp_10q22.3	0.987	1
Amp_3q26.32	Amp_14q21.1	0.987	1
Amp_3q26.32	Del_2q37.3	0.987	1
Amp_8q24.21	Del_14q24.1	0.987	1
Amp_11q14.1	Amp_19q13.42	0.987	1
Amp_12p13.33	Del_17q21.31	0.987	1
Amp_15q26.3	Del_12p13.1	0.987	1
Amp_20q13.2	Del_14q24.1	0.987	1
Del_2q37.3	Del_16q24.3	0.987	1
Del_6q27	Del_11p15.5	0.987	1
Del_19q13.32	Del_21q11.2	0.987	1
ACTL6B	4p-Del	0.988	1
ACTL6B	Del_12q23.1	0.988	1
ARID1A	Amp_11q13.3	0.988	1
C17orf95	PTEN	0.988	1
CASZ1	NCOR1	0.988	1
CASZ1	RBMX	0.988	1
CDC42EP1	16p-Amp	0.988	1
CDC42EP1	Amp_1q44	0.988	1
CDH1	SPEN	0.988	1
ERBB2	IL1RAP	0.988	1
EYS	FOXA1	0.988	1
EYS	USP36	0.988	1
FBXW7	Amp_15q26.3	0.988	1
FBXW7	Del_10q26.3	0.988	1
FOXA1	17q-Amp	0.988	1
FRMPD2	RBMX	0.988	1
GPS2	TAF1L	0.988	1
HRNR	7p-Amp	0.988	1
ICOSLG	Del_5q21.3	0.988	1
IL1RAP	RB1	0.988	1
IL1RAP	16p-Amp	0.988	1
IRS4	Amp_6p23	0.988	1
KCNN3	20q-Amp	0.988	1
KCNN3	Amp_19q13.42	0.988	1
MUC6	TGS1	0.988	1
NCDN	7p-Amp	0.988	1
NCDN	Amp_3p25.1	0.988	1
NCDN	Del_7p22.3	0.988	1
PTPN22	Del_10q26.3	0.988	1
RB1	Del_5q11.2	0.988	1
RUFY1	Del_11q13.1	0.988	1
SF3B1	SPEN	0.988	1
TP53	Del_12q23.1	0.988	1
TP53	Del_12q24.31	0.988	1
USP36	Del_17q21.31	0.988	1
20p-Amp	9q-Del	0.988	1
7p-Amp	Amp_10p15.1	0.988	1
7p-Amp	Amp_11p13	0.988	1
8p-Amp	Amp_1q21.3	0.988	1
11q-Del	Del_15q13.1	0.988	1
1p-Del	Del_5q21.3	0.988	1
1q-Del	4p-Del	0.988	1
1q-Del	Del_12q23.1	0.988	1
4p-Del	Amp_15q26.3	0.988	1
4q-Del	Amp_13q34	0.988	1
8p-Del	Amp_11q14.1	0.988	1
Amp_1p22.3	Del_19p13.3	0.988	1
Amp_1q44	Amp_3p25.1	0.988	1
Amp_1q44	Del_12q23.1	0.988	1
Amp_3q26.32	Del_7p22.3	0.988	1
Amp_8p11.23	Amp_11q14.1	0.988	1
Amp_8p11.23	Del_1p22.1	0.988	1
Amp_8p11.21	Del_16q24.3	0.988	1
Amp_8q24.21	Del_11q13.1	0.988	1
Amp_10q22.3	Del_9q34.2	0.988	1
Amp_11p13	Del_4p16.3	0.988	1
Amp_12q15	Amp_19q13.42	0.988	1
Amp_12q15	Del_19q13.32	0.988	1
Amp_17q23.1	Del_15q13.1	0.988	1
Del_1p36.13	Del_6p25.3	0.988	1
Del_6q27	Del_7q36.1	0.988	1
Del_7p22.3	Del_19p13.3	0.988	1
Del_9p23	Del_16q24.3	0.988	1
APC	GPS2	0.989	1
APC	PTPN22	0.989	1
C17orf95	20q-Amp	0.989	1
CDC42EP1	CDH1	0.989	1
CDH1	IL1RAP	0.989	1
CDKN1B	CTCF	0.989	1
CTCF	PTPN22	0.989	1
CTCF	1q-Del	0.989	1
EYS	18q-Del	0.989	1
FBXW7	FGFR2	0.989	1
FBXW7	GPRIN2	0.989	1
FGFR2	ZMYM3	0.989	1
FOXA1	SMAD4	0.989	1
FOXA1	Del_11q23.3	0.989	1
GATA3	KDM6A	0.989	1
HRNR	ZMYM3	0.989	1
IRS4	KDM6A	0.989	1
IRS4	ZMYM3	0.989	1
KRAS	NF1	0.989	1
MUC6	9q-Del	0.989	1
MYH9	PTPN22	0.989	1
NCOR1	16p-Del	0.989	1
NF1	SP3	0.989	1
NF1	TCP11	0.989	1
PAX2	Del_3p21.31	0.989	1
PAX2	Del_9p21.3	0.989	1
PIK3CA	ZBTB7C	0.989	1
PTPN22	SF3B1	0.989	1
PTPN22	18p-Del	0.989	1
PTPN22	18q-Del	0.989	1
RBMX	16p-Del	0.989	1
RBMX	Amp_19q12	0.989	1
RUFY1	TBX3	0.989	1
RUNX1	TCP11	0.989	1
SMAD2	Del_3p21.31	0.989	1
TFE3	Del_3p21.31	0.989	1
TGS1	Amp_10q22.3	0.989	1
ZBTB7C	11q-Del	0.989	1
ZNF362	Del_3p21.31	0.989	1
20q-Amp	18p-Del	0.989	1
7p-Amp	Amp_20q13.2	0.989	1
7p-Amp	Del_7q36.1	0.989	1
8p-Amp	Amp_10p15.1	0.989	1
11p-Del	Amp_17q23.1	0.989	1
11q-Del	Amp_8p11.21	0.989	1
14q-Del	Del_16q24.3	0.989	1
16q-Del	Amp_1p22.3	0.989	1
18p-Del	Amp_12q15	0.989	1
18p-Del	Del_7q36.1	0.989	1
18q-Del	1q-Del	0.989	1
18q-Del	6q-Del	0.989	1
1p-Del	Del_6q15	0.989	1
1p-Del	Del_12p13.1	0.989	1
4p-Del	Amp_8q24.21	0.989	1
6q-Del	Del_9q21.11	0.989	1
8p-Del	Del_12p13.1	0.989	1
Amp_1p22.3	Del_13q14.2	0.989	1
Amp_3q26.32	Del_9q34.2	0.989	1
Amp_3q26.32	Del_11p15.5	0.989	1
Amp_4q13.3	Del_2q37.3	0.989	1
Amp_8p11.23	Del_21q11.2	0.989	1
Amp_8q24.21	Del_11q25	0.989	1
Amp_10q22.3	Del_15q13.1	0.989	1
Amp_19p13.12	Del_17p12	0.989	1
Del_9p23	Del_11q13.1	0.989	1
Del_11q25	Del_12p13.1	0.989	1
ACTL6B	Del_17p12	0.99	1
ARID1A	SP3	0.99	1
ARID1A	TCP11	0.99	1
CASZ1	TGS1	0.99	1
CBFB	SMAD4	0.99	1
CBFB	TFE3	0.99	1
ERBB2	TPP2	0.99	1
EYS	Del_20p13	0.99	1
FBXW7	SPEN	0.99	1
FGFR2	PIK3R1	0.99	1
FGFR2	Amp_19p13.12	0.99	1
FOXA1	16q-Del	0.99	1
GPRIN2	MUC6	0.99	1
GPS2	Del_17p12	0.99	1
IL1RAP	TAF1L	0.99	1
IRS4	PIK3R1	0.99	1
MED23	NLGN3	0.99	1
MED23	Del_3p21.31	0.99	1
MLL3	SMAD2	0.99	1
MLL3	SMAD4	0.99	1
MLL3	TFE3	0.99	1
MYH9	Amp_11q13.3	0.99	1
NBPF9	Amp_8p11.23	0.99	1
NBPF9	Del_5q11.2	0.99	1
RB1	TPP2	0.99	1
SMAD4	17q-Del	0.99	1
SMAD4	Del_21q11.2	0.99	1
SPEN	ZMYM3	0.99	1
TAF1L	TBX3	0.99	1
TAF1L	VCPIP1	0.99	1
TFE3	17q-Del	0.99	1
TP53	16p-Del	0.99	1
5p-Amp	Amp_3p25.1	0.99	1
5p-Amp	Amp_6q21	0.99	1
11p-Del	Amp_1q21.3	0.99	1
11q-Del	4q-Del	0.99	1
14q-Del	Amp_13q34	0.99	1
15q-Del	Amp_1q21.3	0.99	1
16q-Del	8p-Del	0.99	1
16q-Del	Del_14q24.1	0.99	1
4q-Del	Amp_10p15.1	0.99	1
Amp_1p22.3	Del_1p36.13	0.99	1
Amp_1q21.3	Amp_8p11.21	0.99	1
Amp_3p25.1	Amp_10p15.1	0.99	1
Amp_3p25.1	Amp_17q12	0.99	1
Amp_3p25.1	Amp_19q12	0.99	1
Amp_4q13.3	Amp_11q13.3	0.99	1
Amp_6q21	Amp_19q13.42	0.99	1
Amp_6q21	Del_7p22.3	0.99	1
Amp_8q24.21	Del_11q23.3	0.99	1
Amp_11q13.3	Del_6q15	0.99	1
Amp_13q34	Del_21q11.2	0.99	1
Amp_14q21.1	Del_18q23	0.99	1
Amp_15q26.3	Del_9q21.11	0.99	1
Amp_17q23.1	Del_4p16.3	0.99	1
Amp_19q12	Del_7p22.3	0.99	1
Amp_19q13.42	Del_9q34.2	0.99	1
Amp_20q13.2	Del_11q25	0.99	1
Del_1p36.13	Del_7p22.3	0.99	1
Del_2q37.3	Del_11q13.1	0.99	1
Del_4p16.3	Del_6q15	0.99	1
Del_5q11.2	Del_7q36.1	0.99	1
Del_6q15	Del_19q13.32	0.99	1
Del_7p22.3	Del_21q11.2	0.99	1
Del_11q23.3	Del_12q24.31	0.99	1
ACTL6B	ZMYM3	0.991	1
ACTL6B	Del_3p21.31	0.991	1
APC	TBX3	0.991	1
APC	VCPIP1	0.991	1
C17orf95	HRNR	0.991	1
CASZ1	FGFR2	0.991	1
CDC42EP1	SPEN	0.991	1
CDKN1B	KDM6A	0.991	1
CTCF	TBX3	0.991	1
EYS	SMAD4	0.991	1
EYS	Del_19p13.3	0.991	1
FGFR2	FRMPD2	0.991	1
FGFR2	RBMX	0.991	1
FGFR2	Del_2q37.3	0.991	1
FGFR2	Del_18q23	0.991	1
FRMPD2	IRS4	0.991	1
FRMPD2	NLGN3	0.991	1
GATA3	9p-Del	0.991	1
GPS2	7p-Amp	0.991	1
HRNR	MUC6	0.991	1
HRNR	NBPF9	0.991	1
HRNR	NF1	0.991	1
HRNR	PIK3R1	0.991	1
KCNN3	Amp_3q26.32	0.991	1
MAP2K4	MED23	0.991	1
MLL3	NF1	0.991	1
MLL3	TBX3	0.991	1
MUC6	Amp_15q26.3	0.991	1
MYH9	TBL1XR1	0.991	1
NCDN	NCOR1	0.991	1
PIK3CA	Amp_1q44	0.991	1
PTPN22	Amp_11q13.3	0.991	1
RB1	14q-Del	0.991	1
RUFY1	Del_9q34.2	0.991	1
RUNX1	SPEN	0.991	1
SF3B1	Del_11q25	0.991	1
SMAD2	17p-Del	0.991	1
SP3	Amp_17q12	0.991	1
TP53	15q-Del	0.991	1
USP36	Amp_1q21.3	0.991	1
20p-Amp	Amp_6q21	0.991	1
20p-Amp	Amp_17q12	0.991	1
20q-Amp	Amp_11q14.1	0.991	1
7p-Amp	8p-Amp	0.991	1
7q-Amp	Amp_1p22.3	0.991	1
7q-Amp	Amp_15q26.3	0.991	1
8p-Amp	Amp_17q12	0.991	1
8p-Amp	Del_10q23.31	0.991	1
11q-Del	Del_12q24.31	0.991	1
11q-Del	Del_20p13	0.991	1
15q-Del	Del_19q13.32	0.991	1
16p-Del	1p-Del	0.991	1
16q-Del	9p-Del	0.991	1
17p-Del	Amp_19p13.12	0.991	1
17q-Del	Amp_3q26.32	0.991	1
18q-Del	Del_19q13.32	0.991	1
1p-Del	Del_9q21.11	0.991	1
4q-Del	Del_6q27	0.991	1
Amp_4q13.3	Amp_17q12	0.991	1
Amp_4q13.3	Del_4q35.1	0.991	1
Amp_6p23	Del_19p13.3	0.991	1
Amp_6q21	Del_17p12	0.991	1
Amp_8p11.23	Amp_12q15	0.991	1
Amp_8p11.23	Del_1p36.13	0.991	1
Amp_8p11.21	Amp_10p15.1	0.991	1
Amp_8p11.21	Amp_19q13.42	0.991	1
Amp_8p11.21	Del_14q24.1	0.991	1
Amp_8q24.21	Amp_15q26.3	0.991	1
Amp_10p15.1	Del_12q23.1	0.991	1
Amp_10p15.1	Del_14q24.1	0.991	1
Amp_11p13	Amp_13q34	0.991	1
Amp_11p13	Amp_17q23.1	0.991	1
Amp_11p13	Del_5q21.3	0.991	1
Amp_11p13	Del_18q23	0.991	1
Amp_11q13.3	Del_13q14.2	0.991	1
Amp_11q14.1	Del_19q13.32	0.991	1
Amp_14q21.1	Del_8p23.2	0.991	1
Amp_14q21.1	Del_15q13.1	0.991	1
Amp_15q26.3	Del_14q24.1	0.991	1
Amp_17q23.1	Del_1p22.1	0.991	1
Amp_19q13.42	Del_11p15.5	0.991	1
Del_4q35.1	Del_9q21.11	0.991	1
Del_7p22.3	Del_10q23.31	0.991	1
Del_7q36.1	Del_8p23.2	0.991	1
ACTL6B	MUC6	0.992	1
APC	ARID1A	0.992	1
AQP12A	Del_6p25.3	0.992	1
AQP12A	Del_11q23.3	0.992	1
C17orf95	Del_10q26.3	0.992	1
CBFB	RB1	0.992	1
CBFB	16p-Amp	0.992	1
CDC42EP1	RUNX1	0.992	1
CDH1	FOXA1	0.992	1
EYS	NCOR1	0.992	1
EYS	Amp_4q13.3	0.992	1
FBXW7	KCNN3	0.992	1
FBXW7	5p-Amp	0.992	1
FGFR2	NCOR1	0.992	1
FGFR2	Amp_4q13.3	0.992	1
FGFR2	Del_17q21.31	0.992	1
FOXA1	ICOSLG	0.992	1
FOXA1	SP3	0.992	1
GATA3	VCPIP1	0.992	1
HRNR	Del_10q26.3	0.992	1
ICOSLG	Del_11q23.3	0.992	1
IL1RAP	ZMYM3	0.992	1
IRS4	NCOR1	0.992	1
KDM6A	VCPIP1	0.992	1
MUC6	PTPN22	0.992	1
MUC6	SPEN	0.992	1
MUC6	1q-Del	0.992	1
NCOR1	NLGN3	0.992	1
NF1	SPEN	0.992	1
PAX2	Del_17p12	0.992	1
PTEN	1p-Del	0.992	1
PTEN	Del_1p22.1	0.992	1
RAB42	TP53	0.992	1
RB1	9p-Del	0.992	1
SMAD2	15q-Del	0.992	1
TAF1L	TPP2	0.992	1
TAF1L	USP36	0.992	1
TFE3	Amp_8p11.23	0.992	1
TGS1	1q-Amp	0.992	1
TP53	Del_8p23.2	0.992	1
TP53	Del_13q14.2	0.992	1
TP53	Del_19q13.32	0.992	1
TPP2	5p-Amp	0.992	1
ZBTB7C	Del_17q21.31	0.992	1
ZFP36L1	5p-Amp	0.992	1
ZFP36L1	22q-Del	0.992	1
ZFP36L2	Amp_8p11.23	0.992	1
ZNF362	Del_17p12	0.992	1
16p-Amp	Amp_1q44	0.992	1
20p-Amp	Amp_6p23	0.992	1
20q-Amp	6q-Del	0.992	1
5p-Amp	Amp_1q44	0.992	1
8p-Amp	Amp_17q23.1	0.992	1
8p-Amp	Del_10q26.3	0.992	1
8q-Amp	Amp_3q26.32	0.992	1
11p-Del	Del_2q37.3	0.992	1
11q-Del	Amp_17q12	0.992	1
14q-Del	Amp_1p22.3	0.992	1
14q-Del	Amp_19p13.12	0.992	1
14q-Del	Del_11q13.1	0.992	1
15q-Del	Del_8p23.2	0.992	1
17q-Del	Amp_19p13.12	0.992	1
18p-Del	Amp_17q23.1	0.992	1
18p-Del	Del_5q11.2	0.992	1
1p-Del	4p-Del	0.992	1
22q-Del	Del_4q35.1	0.992	1
5q-Del	9p-Del	0.992	1
8p-Del	Del_5q11.2	0.992	1
8p-Del	Del_6q27	0.992	1
9p-Del	Del_7p22.3	0.992	1
9q-Del	Del_8p23.2	0.992	1
Amp_3p25.1	Del_9p21.3	0.992	1
Amp_3p25.1	Del_10q26.3	0.992	1
Amp_3p25.1	Del_15q13.1	0.992	1
Amp_3q26.32	Del_9p21.3	0.992	1
Amp_4q13.3	Del_19q13.32	0.992	1
Amp_6p23	Amp_19p13.12	0.992	1
Amp_8q24.21	Del_12p13.1	0.992	1
Amp_10p15.1	Amp_11p13	0.992	1
Amp_10q22.3	Del_9p23	0.992	1
Amp_11p13	Amp_19p13.12	0.992	1
Amp_11q14.1	Amp_20q13.2	0.992	1
Amp_12p13.33	Del_12q23.1	0.992	1
Amp_12p13.33	Del_12q24.31	0.992	1
Amp_12p13.33	Del_21q11.2	0.992	1
Amp_12q15	Amp_15q26.3	0.992	1
Amp_12q15	Del_6q15	0.992	1
Amp_14q21.1	Amp_19q12	0.992	1
Amp_15q26.3	Del_7q36.1	0.992	1
Amp_15q26.3	Del_18q23	0.992	1
Amp_19p13.12	Del_9q21.11	0.992	1
Amp_19q12	Del_13q14.2	0.992	1
Amp_19q12	Del_15q13.1	0.992	1
Amp_20q13.2	Del_17p12	0.992	1
Del_1p22.1	Del_6q15	0.992	1
Del_10q23.31	Del_12q23.1	0.992	1
APC	TPP2	0.993	1
APC	USP36	0.993	1
ARID1A	C17orf95	0.993	1
ARID1A	CDC42EP1	0.993	1
ARID1A	8p-Del	0.993	1
C17orf95	TBX3	0.993	1
C17orf95	20p-Amp	0.993	1
CASZ1	GPS2	0.993	1
CASZ1	HRNR	0.993	1
CASZ1	PTPN22	0.993	1
CDC42EP1	TBX3	0.993	1
CDKN1B	FRMPD2	0.993	1
CDKN1B	RBMX	0.993	1
CTCF	TPP2	0.993	1
EYS	Del_9p21.3	0.993	1
FBXW7	NF1	0.993	1
FRMPD2	HRNR	0.993	1
FRMPD2	Amp_1p22.3	0.993	1
GPS2	Del_16q24.3	0.993	1
IL1RAP	PIK3CA	0.993	1
KCNN3	Del_6q27	0.993	1
KDM6A	NF1	0.993	1
MAP3K1	TCP11	0.993	1
MED23	18q-Del	0.993	1
MUC6	5q-Del	0.993	1
MYH9	USP36	0.993	1
MYH9	Amp_1q44	0.993	1
NBPF9	NF1	0.993	1
NBPF9	Del_22q13.32	0.993	1
NCOR1	PIK3CA	0.993	1
NF1	ZMYM3	0.993	1
NLGN3	TGS1	0.993	1
PAX2	PTEN	0.993	1
PAX2	Del_9p23	0.993	1
PIK3CA	TBL1XR1	0.993	1
PIK3R1	TBL1XR1	0.993	1
PTEN	ZBTB7C	0.993	1
PTEN	9q-Del	0.993	1
PTPN22	Amp_10q22.3	0.993	1
RB1	SMAD2	0.993	1
RB1	ZFP36L2	0.993	1
RBMX	1q-Del	0.993	1
RUFY1	4q-Del	0.993	1
SMAD4	Amp_15q26.3	0.993	1
SMAD4	Del_17q21.31	0.993	1
SP3	Del_12p13.1	0.993	1
TBX3	ZMYM3	0.993	1
TPP2	16q-Del	0.993	1
TPP2	Amp_11q14.1	0.993	1
TPP2	Amp_13q34	0.993	1
USP36	Amp_13q34	0.993	1
17q-Amp	13q-Del	0.993	1
20q-Amp	7p-Amp	0.993	1
20q-Amp	Amp_12p13.33	0.993	1
7p-Amp	Del_16q24.3	0.993	1
8q-Amp	Amp_10q22.3	0.993	1
8q-Amp	Amp_11p13	0.993	1
8q-Amp	Amp_19q12	0.993	1
8q-Amp	Del_21q11.2	0.993	1
11p-Del	Amp_17q12	0.993	1
13q-Del	5q-Del	0.993	1
14q-Del	17q-Del	0.993	1
14q-Del	Amp_10p15.1	0.993	1
14q-Del	Del_12q23.1	0.993	1
15q-Del	Del_16q24.3	0.993	1
16p-Del	Amp_8p11.23	0.993	1
17p-Del	Amp_15q26.3	0.993	1
17p-Del	Del_7q36.1	0.993	1
18q-Del	Amp_11q13.3	0.993	1
18q-Del	Del_12p13.1	0.993	1
1p-Del	Amp_17q12	0.993	1
1p-Del	Del_7q36.1	0.993	1
22q-Del	Del_12q24.31	0.993	1
4q-Del	8p-Del	0.993	1
5q-Del	Amp_10q22.3	0.993	1
9q-Del	Del_7p22.3	0.993	1
9q-Del	Del_11p15.5	0.993	1
Amp_1p22.3	Del_4p16.3	0.993	1
Amp_1q21.3	Del_13q14.2	0.993	1
Amp_3p25.1	Del_20p13	0.993	1
Amp_6p23	Amp_11p13	0.993	1
Amp_6p23	Del_10q26.3	0.993	1
Amp_6q21	Del_6p25.3	0.993	1
Amp_10q22.3	Del_5q11.2	0.993	1
Amp_11q14.1	Del_10q23.31	0.993	1
Amp_12p13.33	Amp_20q13.2	0.993	1
Amp_12q15	Del_11q25	0.993	1
Amp_13q34	Del_20p13	0.993	1
Amp_14q21.1	Amp_17q12	0.993	1
Amp_19q13.42	Del_8p23.2	0.993	1
Amp_20q13.2	Del_9q21.11	0.993	1
Del_1p22.1	Del_12p13.1	0.993	1
Del_1p22.1	Del_19q13.32	0.993	1
Del_4q35.1	Del_6q27	0.993	1
Del_6q27	Del_12q24.31	0.993	1
Del_7p22.3	Del_20p13	0.993	1
Del_9p23	Del_12p13.1	0.993	1
Del_9p23	Del_12q23.1	0.993	1
Del_11q13.1	Del_22q13.32	0.993	1
Del_12p13.1	Del_20p13	0.993	1
Del_12q24.31	Del_19q13.32	0.993	1
ACTL6B	8p-Del	0.994	1
AQP12A	Del_9p21.3	0.994	1
ARID1A	FBXW7	0.994	1
ARID1A	ZMYM3	0.994	1
CASZ1	SPEN	0.994	1
CASZ1	VCPIP1	0.994	1
CDH1	TGS1	0.994	1
CDKN1B	TGS1	0.994	1
EYS	KRAS	0.994	1
EYS	RUFY1	0.994	1
EYS	SP3	0.994	1
EYS	Del_15q13.1	0.994	1
FBXW7	TPP2	0.994	1
FBXW7	Del_12q23.1	0.994	1
FGFR2	16p-Del	0.994	1
FOXA1	Del_11q25	0.994	1
FRMPD2	IL1RAP	0.994	1
GPS2	MYB	0.994	1
ICOSLG	MLL3	0.994	1
IL1RAP	RBMX	0.994	1
KCNN3	Del_5q21.3	0.994	1
KCNN3	Del_7p22.3	0.994	1
KDM6A	USP36	0.994	1
KDM6A	ZFP36L1	0.994	1
MAP2K4	16p-Amp	0.994	1
MLL3	RUFY1	0.994	1
MLL3	TCP11	0.994	1
MUC6	NF1	0.994	1
MUC6	Del_5q21.3	0.994	1
NCOR1	Del_7p22.3	0.994	1
NF1	PIK3R1	0.994	1
PAX2	Del_11p15.5	0.994	1
PAX2	Del_19p13.3	0.994	1
PIK3R1	17p-Del	0.994	1
PTPN22	17q-Amp	0.994	1
PTPN22	Del_2q37.3	0.994	1
RUFY1	Del_3p21.31	0.994	1
SMAD2	TAF1L	0.994	1
SMAD4	Del_9p23	0.994	1
SP3	14q-Del	0.994	1
TAF1L	TFE3	0.994	1
TAF1L	ZFP36L2	0.994	1
TP53	Amp_8p11.21	0.994	1
TPP2	ZMYM3	0.994	1
USP36	ZMYM3	0.994	1
VCPIP1	20p-Amp	0.994	1
16p-Amp	Amp_12q15	0.994	1
16p-Amp	Del_22q13.32	0.994	1
17q-Amp	Amp_8p11.23	0.994	1
11q-Del	Del_7q36.1	0.994	1
14q-Del	Amp_10q22.3	0.994	1
14q-Del	Amp_11q14.1	0.994	1
15q-Del	6q-Del	0.994	1
15q-Del	Amp_15q26.3	0.994	1
16p-Del	Amp_15q26.3	0.994	1
17q-Del	Del_10q23.31	0.994	1
18q-Del	9q-Del	0.994	1
18q-Del	Del_15q13.1	0.994	1
1q-Del	Del_9q34.2	0.994	1
5q-Del	Del_22q13.32	0.994	1
6q-Del	Del_7p22.3	0.994	1
8p-Del	Del_9q21.11	0.994	1
Amp_1p22.3	Amp_13q34	0.994	1
Amp_1q21.3	Amp_12p13.33	0.994	1
Amp_3p25.1	Del_9p23	0.994	1
Amp_3q26.32	Del_1p36.13	0.994	1
Amp_3q26.32	Del_17q21.31	0.994	1
Amp_3q26.32	Del_19p13.3	0.994	1
Amp_6p23	Del_4p16.3	0.994	1
Amp_6q21	Del_12q24.31	0.994	1
Amp_8p11.21	Del_5q11.2	0.994	1
Amp_8p11.21	Del_19p13.3	0.994	1
Amp_10p15.1	Amp_15q26.3	0.994	1
Amp_10q22.3	Amp_19p13.12	0.994	1
Amp_11q13.3	Del_17p12	0.994	1
Amp_11q14.1	Del_19p13.3	0.994	1
Amp_12q15	Del_13q14.2	0.994	1
Amp_13q34	Amp_19p13.12	0.994	1
Amp_14q21.1	Del_4p16.3	0.994	1
Amp_14q21.1	Del_13q14.2	0.994	1
Amp_15q26.3	Del_11q25	0.994	1
Amp_15q26.3	Del_22q13.32	0.994	1
Amp_17q23.1	Del_4q35.1	0.994	1
Amp_19q13.42	Del_4q35.1	0.994	1
Del_1p22.1	Del_2q37.3	0.994	1
Del_5q21.3	Del_21q11.2	0.994	1
Del_7p22.3	Del_12q24.31	0.994	1
Del_7q36.1	Del_9q34.2	0.994	1
Del_7q36.1	Del_13q14.2	0.994	1
Del_9q21.11	Del_11p15.5	0.994	1
Del_11q13.1	Del_14q24.1	0.994	1
ACTL6B	IRS4	0.995	1
APC	SMAD4	0.995	1
AQP12A	Del_11q25	0.995	1
ARID1A	NF1	0.995	1
CASZ1	TBX3	0.995	1
CBFB	CDC42EP1	0.995	1
CBFB	MYH9	0.995	1
CBFB	NBPF9	0.995	1
CDKN1B	FGFR2	0.995	1
CDKN1B	IRS4	0.995	1
CDKN1B	NLGN3	0.995	1
CTCF	Del_12p13.1	0.995	1
ERBB2	KRAS	0.995	1
ERBB2	NCOR1	0.995	1
ERBB2	RB1	0.995	1
ERBB2	RUFY1	0.995	1
EYS	Amp_19q13.42	0.995	1
EYS	Del_2q37.3	0.995	1
FBXW7	TFE3	0.995	1
FGFR2	17q-Del	0.995	1
FOXA1	MAP3K1	0.995	1
FRMPD2	NF1	0.995	1
FRMPD2	TPP2	0.995	1
GATA3	Del_9p23	0.995	1
GATA3	Del_22q13.32	0.995	1
GPRIN2	GPS2	0.995	1
ICOSLG	11q-Del	0.995	1
ICOSLG	Del_11q25	0.995	1
IRS4	MAP2K4	0.995	1
IRS4	PTPN22	0.995	1
KCNN3	TP53	0.995	1
KCNN3	Amp_19p13.12	0.995	1
KCNN3	Del_3p21.31	0.995	1
KCNN3	Del_9p21.3	0.995	1
KDM6A	SMAD2	0.995	1
KRAS	RB1	0.995	1
MAP2K4	NLGN3	0.995	1
MLL3	TAF1L	0.995	1
MYB	TBL1XR1	0.995	1
MYH9	SMAD4	0.995	1
NBPF9	22q-Del	0.995	1
NBPF9	Del_2q37.3	0.995	1
NCDN	SPEN	0.995	1
NCDN	16p-Amp	0.995	1
NCDN	Amp_11q14.1	0.995	1
NCDN	Del_4q35.1	0.995	1
NLGN3	PTPN22	0.995	1
PAX2	Del_4q35.1	0.995	1
PIK3CA	16q-Del	0.995	1
PIK3R1	TPP2	0.995	1
PTEN	9p-Del	0.995	1
PTPN22	Del_17q21.31	0.995	1
PTPN22	Del_18q23	0.995	1
RAB42	7q-Amp	0.995	1
RB1	RUFY1	0.995	1
RBMX	TPP2	0.995	1
RUFY1	9q-Del	0.995	1
SF3B1	SMAD4	0.995	1
SMAD2	ZMYM3	0.995	1
SPEN	ZBTB7C	0.995	1
TBX3	Amp_1q21.3	0.995	1
TFE3	ZMYM3	0.995	1
TGS1	VCPIP1	0.995	1
TPP2	Del_16q24.3	0.995	1
VCPIP1	Amp_10q22.3	0.995	1
ZFP36L1	Del_16q24.3	0.995	1
ZFP36L2	Amp_8p11.21	0.995	1
ZNF362	7q-Amp	0.995	1
17q-Amp	Amp_19q13.42	0.995	1
20q-Amp	Amp_19q13.42	0.995	1
5p-Amp	7q-Amp	0.995	1
5p-Amp	8q-Amp	0.995	1
8q-Amp	Amp_19p13.12	0.995	1
11q-Del	Del_4p16.3	0.995	1
11q-Del	Del_5q11.2	0.995	1
11q-Del	Del_5q21.3	0.995	1
13q-Del	Amp_19p13.12	0.995	1
15q-Del	Amp_12p13.33	0.995	1
15q-Del	Amp_19p13.12	0.995	1
15q-Del	Amp_19q12	0.995	1
16q-Del	Del_6p25.3	0.995	1
18p-Del	Amp_11q14.1	0.995	1
18p-Del	Amp_12p13.33	0.995	1
1q-Del	Del_17q21.31	0.995	1
1q-Del	Del_18q23	0.995	1
22q-Del	Amp_13q34	0.995	1
4p-Del	Amp_17q23.1	0.995	1
4p-Del	Amp_19q12	0.995	1
6q-Del	Del_18q23	0.995	1
9p-Del	Amp_15q26.3	0.995	1
Amp_3p25.1	Del_6p25.3	0.995	1
Amp_3q26.32	Del_14q24.1	0.995	1
Amp_4q13.3	Amp_6q21	0.995	1
Amp_4q13.3	Amp_19q13.42	0.995	1
Amp_8p11.23	Del_6q27	0.995	1
Amp_8p11.23	Del_20p13	0.995	1
Amp_8p11.21	Amp_11p13	0.995	1
Amp_8p11.21	Amp_12q15	0.995	1
Amp_8p11.21	Del_5q21.3	0.995	1
Amp_11p13	Del_19p13.3	0.995	1
Amp_11q13.3	Del_1p36.13	0.995	1
Amp_11q13.3	Del_1p22.1	0.995	1
Amp_11q13.3	Del_11p15.5	0.995	1
Amp_11q14.1	Del_11p15.5	0.995	1
Amp_13q34	Amp_14q21.1	0.995	1
Amp_15q26.3	Del_8p23.2	0.995	1
Amp_19p13.12	Del_3p21.31	0.995	1
Amp_19p13.12	Del_20p13	0.995	1
Del_1p22.1	Del_6q27	0.995	1
Del_2q37.3	Del_11q25	0.995	1
Del_4p16.3	Del_7p22.3	0.995	1
Del_4p16.3	Del_9q21.11	0.995	1
Del_6p25.3	Del_17q21.31	0.995	1
Del_6q27	Del_10q23.31	0.995	1
Del_6q27	Del_12p13.1	0.995	1
Del_14q24.1	Del_21q11.2	0.995	1
ACTL6B	1q-Del	0.996	1
ACTL6B	Amp_19q12	0.996	1
APC	ICOSLG	0.996	1
APC	KRAS	0.996	1
APC	RUFY1	0.996	1
APC	SP3	0.996	1
ARID1A	CASZ1	0.996	1
ARID1A	NCDN	0.996	1
ARID1A	PAX2	0.996	1
C17orf95	ERBB2	0.996	1
C17orf95	PIK3CA	0.996	1
C17orf95	RB1	0.996	1
CBFB	GATA3	0.996	1
CDC42EP1	ERBB2	0.996	1
CDC42EP1	EYS	0.996	1
CDC42EP1	RB1	0.996	1
CDH1	SMAD2	0.996	1
CDKN1B	PTPN22	0.996	1
EYS	MYH9	0.996	1
EYS	Amp_3q26.32	0.996	1
FGFR2	IL1RAP	0.996	1
FGFR2	KCNN3	0.996	1
FGFR2	Del_17p12	0.996	1
FOXA1	PIK3R1	0.996	1
GPRIN2	VCPIP1	0.996	1
GPS2	PTEN	0.996	1
IL1RAP	IRS4	0.996	1
IRS4	SPEN	0.996	1
KRAS	TAF1L	0.996	1
MAP3K1	Amp_8p11.21	0.996	1
MED23	TFE3	0.996	1
MUC6	SMAD4	0.996	1
MYB	TBX3	0.996	1
MYH9	SP3	0.996	1
MYH9	TCP11	0.996	1
NCDN	Amp_3q26.32	0.996	1
NF1	ZBTB7C	0.996	1
NLGN3	SPEN	0.996	1
NLGN3	VCPIP1	0.996	1
PAX2	TBX3	0.996	1
PAX2	9p-Del	0.996	1
PIK3CA	1q-Amp	0.996	1
PIK3R1	SMAD2	0.996	1
RAB42	Amp_10p15.1	0.996	1
RB1	TAF1L	0.996	1
SF3B1	SP3	0.996	1
SMAD2	Del_15q13.1	0.996	1
SMAD2	Del_17p12	0.996	1
SMAD4	Amp_14q21.1	0.996	1
TGS1	Amp_1q44	0.996	1
TP53	Amp_3p25.1	0.996	1
TP53	Del_7p22.3	0.996	1
USP36	13q-Del	0.996	1
VCPIP1	17q-Amp	0.996	1
VCPIP1	Amp_4q13.3	0.996	1
ZFP36L1	13q-Del	0.996	1
ZFP36L1	18p-Del	0.996	1
ZFP36L1	18q-Del	0.996	1
ZFP36L1	6q-Del	0.996	1
16p-Amp	7q-Amp	0.996	1
16p-Amp	Amp_8q24.21	0.996	1
17q-Amp	Amp_11q13.3	0.996	1
20q-Amp	11q-Del	0.996	1
5p-Amp	Amp_8p11.21	0.996	1
5p-Amp	Amp_12p13.33	0.996	1
7p-Amp	Del_9p21.3	0.996	1
8q-Amp	5q-Del	0.996	1
8q-Amp	Del_5q11.2	0.996	1
11p-Del	Del_19p13.3	0.996	1
11q-Del	Del_19q13.32	0.996	1
13q-Del	Del_12q23.1	0.996	1
14q-Del	1q-Del	0.996	1
14q-Del	Amp_6q21	0.996	1
15q-Del	Amp_10p15.1	0.996	1
15q-Del	Del_7q36.1	0.996	1
16q-Del	Del_8p23.2	0.996	1
17q-Del	Amp_8q24.21	0.996	1
17q-Del	Del_1p22.1	0.996	1
17q-Del	Del_6q15	0.996	1
17q-Del	Del_11q25	0.996	1
17q-Del	Del_12p13.1	0.996	1
18q-Del	Del_7q36.1	0.996	1
18q-Del	Del_11p15.5	0.996	1
1p-Del	Amp_8p11.23	0.996	1
1q-Del	Amp_12p13.33	0.996	1
1q-Del	Del_8p23.2	0.996	1
1q-Del	Del_11q25	0.996	1
1q-Del	Del_19p13.3	0.996	1
22q-Del	Del_10q23.31	0.996	1
5q-Del	Amp_3q26.32	0.996	1
5q-Del	Del_6q27	0.996	1
6q-Del	8p-Del	0.996	1
9p-Del	Amp_8q24.21	0.996	1
Amp_1p22.3	Del_14q24.1	0.996	1
Amp_1q21.3	Amp_3q26.32	0.996	1
Amp_3p25.1	Del_1p36.13	0.996	1
Amp_3p25.1	Del_8p23.2	0.996	1
Amp_3p25.1	Del_19q13.32	0.996	1
Amp_3q26.32	Del_12q23.1	0.996	1
Amp_4q13.3	Amp_8q24.21	0.996	1
Amp_6p23	Del_7q36.1	0.996	1
Amp_6q21	Amp_8q24.21	0.996	1
Amp_6q21	Amp_19q12	0.996	1
Amp_8p11.23	Amp_14q21.1	0.996	1
Amp_8q24.21	Del_4p16.3	0.996	1
Amp_8q24.21	Del_6q27	0.996	1
Amp_8q24.21	Del_9p21.3	0.996	1
Amp_8q24.21	Del_17p12	0.996	1
Amp_10p15.1	Amp_14q21.1	0.996	1
Amp_11p13	Del_5q11.2	0.996	1
Amp_11q14.1	Amp_17q12	0.996	1
Amp_11q14.1	Del_9p21.3	0.996	1
Amp_12p13.33	Del_13q14.2	0.996	1
Amp_12p13.33	Del_19q13.32	0.996	1
Amp_12q15	Amp_17q23.1	0.996	1
Amp_13q34	Del_12q23.1	0.996	1
Amp_15q26.3	Del_5q11.2	0.996	1
Amp_17q23.1	Del_11q13.1	0.996	1
Amp_19p13.12	Del_12q24.31	0.996	1
Amp_19q13.42	Del_9q21.11	0.996	1
Del_1p22.1	Del_4q35.1	0.996	1
Del_1p22.1	Del_15q13.1	0.996	1
Del_6p25.3	Del_7q36.1	0.996	1
Del_6p25.3	Del_8p23.2	0.996	1
Del_9p21.3	Del_12q23.1	0.996	1
Del_9q21.11	Del_12p13.1	0.996	1
Del_12q23.1	Del_16q24.3	0.996	1
Del_18q23	Del_19q13.32	0.996	1
APC	ERBB2	0.997	1
AQP12A	MUC6	0.997	1
AQP12A	PIK3R1	0.997	1
AQP12A	Del_18q23	0.997	1
ARID1A	TGS1	0.997	1
C17orf95	MLL3	0.997	1
C17orf95	MYH9	0.997	1
C17orf95	SF3B1	0.997	1
CASZ1	FOXA1	0.997	1
CASZ1	SMAD4	0.997	1
CBFB	NCDN	0.997	1
CBFB	Del_7q36.1	0.997	1
CDC42EP1	MLL3	0.997	1
CDC42EP1	TAF1L	0.997	1
CDC42EP1	Amp_19q12	0.997	1
CDC42EP1	Del_21q11.2	0.997	1
CDH1	PTEN	0.997	1
CDKN1B	MLL3	0.997	1
CDKN1B	SPEN	0.997	1
CDKN1B	TBL1XR1	0.997	1
CDKN1B	VCPIP1	0.997	1
CTCF	16q-Del	0.997	1
ERBB2	FBXW7	0.997	1
EYS	ZBTB7C	0.997	1
EYS	Del_10q23.31	0.997	1
EYS	Del_17q21.31	0.997	1
FBXW7	KRAS	0.997	1
FBXW7	RUFY1	0.997	1
FGFR2	TBX3	0.997	1
FGFR2	TPP2	0.997	1
FGFR2	ZFP36L1	0.997	1
FOXA1	NCDN	0.997	1
FRMPD2	TFE3	0.997	1
FRMPD2	ZFP36L2	0.997	1
GPRIN2	TPP2	0.997	1
GPS2	TPP2	0.997	1
ICOSLG	PIK3R1	0.997	1
IL1RAP	VCPIP1	0.997	1
KCNN3	1q-Del	0.997	1
KCNN3	Del_12p13.1	0.997	1
KDM6A	RUFY1	0.997	1
KDM6A	SP3	0.997	1
KDM6A	TCP11	0.997	1
KRAS	PIK3R1	0.997	1
KRAS	ZMYM3	0.997	1
MAP2K4	17p-Del	0.997	1
MAP3K1	MLL3	0.997	1
MAP3K1	NBPF9	0.997	1
MAP3K1	TBL1XR1	0.997	1
MED23	PIK3CA	0.997	1
MED23	Del_6q15	0.997	1
MED23	Del_6q27	0.997	1
MLL3	PTPN22	0.997	1
MUC6	SP3	0.997	1
MUC6	Del_19q13.32	0.997	1
NCOR1	TAF1L	0.997	1
NF1	PIK3CA	0.997	1
NLGN3	USP36	0.997	1
PAX2	17p-Del	0.997	1
PIK3R1	RUFY1	0.997	1
PTPN22	TPP2	0.997	1
PTPN22	Amp_12q15	0.997	1
PTPN22	Amp_17q12	0.997	1
PTPN22	Del_4q35.1	0.997	1
RBMX	SMAD2	0.997	1
RUFY1	ZMYM3	0.997	1
SF3B1	Del_10q23.31	0.997	1
SF3B1	Del_10q26.3	0.997	1
TAF1L	Del_17q21.31	0.997	1
TCP11	Amp_8p11.23	0.997	1
TFE3	TGS1	0.997	1
TP53	Amp_1p22.3	0.997	1
USP36	Del_13q14.2	0.997	1
ZFP36L1	Del_1p36.13	0.997	1
16p-Amp	20p-Amp	0.997	1
17q-Amp	1q-Amp	0.997	1
17q-Amp	8p-Amp	0.997	1
1q-Amp	5p-Amp	0.997	1
20p-Amp	Amp_11p13	0.997	1
20p-Amp	Amp_12p13.33	0.997	1
20p-Amp	Amp_19q13.42	0.997	1
20p-Amp	Del_13q14.2	0.997	1
20q-Amp	9q-Del	0.997	1
20q-Amp	Del_19p13.3	0.997	1
5p-Amp	Amp_20q13.2	0.997	1
7p-Amp	Amp_19q13.42	0.997	1
8p-Amp	Amp_10q22.3	0.997	1
8q-Amp	11q-Del	0.997	1
11p-Del	16q-Del	0.997	1
11p-Del	Del_18q23	0.997	1
11q-Del	Del_18q23	0.997	1
15q-Del	17p-Del	0.997	1
15q-Del	9q-Del	0.997	1
15q-Del	Del_10q23.31	0.997	1
15q-Del	Del_20p13	0.997	1
16p-Del	Amp_8p11.21	0.997	1
16p-Del	Amp_19q12	0.997	1
16q-Del	Del_3p21.31	0.997	1
17p-Del	Amp_11q13.3	0.997	1
18p-Del	Del_10q26.3	0.997	1
18p-Del	Del_15q13.1	0.997	1
1p-Del	4q-Del	0.997	1
1p-Del	Del_9p23	0.997	1
1q-Del	9q-Del	0.997	1
1q-Del	Del_4q35.1	0.997	1
1q-Del	Del_14q24.1	0.997	1
4q-Del	Amp_11q14.1	0.997	1
4q-Del	Amp_15q26.3	0.997	1
4q-Del	Del_7p22.3	0.997	1
4q-Del	Del_7q36.1	0.997	1
5q-Del	Amp_6p23	0.997	1
5q-Del	Del_7p22.3	0.997	1
6q-Del	Amp_8p11.23	0.997	1
8p-Del	Del_7p22.3	0.997	1
Amp_3p25.1	Amp_20q13.2	0.997	1
Amp_3p25.1	Del_18q23	0.997	1
Amp_3p25.1	Del_21q11.2	0.997	1
Amp_3q26.32	Amp_11p13	0.997	1
Amp_4q13.3	Amp_14q21.1	0.997	1
Amp_4q13.3	Del_8p23.2	0.997	1
Amp_4q13.3	Del_15q13.1	0.997	1
Amp_6p23	Amp_14q21.1	0.997	1
Amp_6q21	Amp_11p13	0.997	1
Amp_6q21	Del_11p15.5	0.997	1
Amp_6q21	Del_14q24.1	0.997	1
Amp_6q21	Del_20p13	0.997	1
Amp_8p11.21	Del_20p13	0.997	1
Amp_10q22.3	Amp_20q13.2	0.997	1
Amp_11p13	Del_11q25	0.997	1
Amp_11p13	Del_17q21.31	0.997	1
Amp_11q13.3	Del_9q21.11	0.997	1
Amp_11q13.3	Del_16q24.3	0.997	1
Amp_11q14.1	Del_1p22.1	0.997	1
Amp_11q14.1	Del_9q34.2	0.997	1
Amp_11q14.1	Del_13q14.2	0.997	1
Amp_11q14.1	Del_18q23	0.997	1
Amp_12q15	Del_9p23	0.997	1
Amp_12q15	Del_9p21.3	0.997	1
Amp_17q12	Del_11q23.3	0.997	1
Amp_19p13.12	Del_5q21.3	0.997	1
Amp_19p13.12	Del_12p13.1	0.997	1
Amp_19q12	Del_9q21.11	0.997	1
Amp_20q13.2	Del_1p36.13	0.997	1
Del_1p22.1	Del_8p23.2	0.997	1
Del_4q35.1	Del_9p23	0.997	1
Del_5q11.2	Del_9p23	0.997	1
Del_6q15	Del_7q36.1	0.997	1
Del_6q15	Del_12p13.1	0.997	1
Del_6q27	Del_17q21.31	0.997	1
Del_7p22.3	Del_9p21.3	0.997	1
Del_9p23	Del_21q11.2	0.997	1
Del_9p21.3	Del_12p13.1	0.997	1
Del_10q23.31	Del_22q13.32	0.997	1
Del_11q25	Del_12q24.31	0.997	1
Del_16q24.3	Del_17q21.31	0.997	1
ACTL6B	17p-Del	0.998	1
ACTL6B	Amp_8q24.21	0.998	1
APC	TAF1L	0.998	1
APC	ZNF362	0.998	1
AQP12A	CASZ1	0.998	1
AQP12A	FRMPD2	0.998	1
AQP12A	7p-Amp	0.998	1
AQP12A	Amp_11q13.3	0.998	1
AQP12A	Amp_20q13.2	0.998	1
AQP12A	Del_22q13.32	0.998	1
ARID1A	EYS	0.998	1
C17orf95	FBXW7	0.998	1
C17orf95	FRMPD2	0.998	1
C17orf95	KDM6A	0.998	1
C17orf95	MUC6	0.998	1
C17orf95	PIK3R1	0.998	1
C17orf95	RBMX	0.998	1
C17orf95	ZMYM3	0.998	1
CASZ1	ERBB2	0.998	1
CASZ1	EYS	0.998	1
CASZ1	KRAS	0.998	1
CASZ1	RB1	0.998	1
CASZ1	RUFY1	0.998	1
CASZ1	SP3	0.998	1
CBFB	PIK3CA	0.998	1
CDC42EP1	Amp_11p13	0.998	1
CDC42EP1	Amp_19q13.42	0.998	1
CDH1	ICOSLG	0.998	1
CDH1	RUNX1	0.998	1
CDKN1B	SMAD4	0.998	1
ERBB2	FRMPD2	0.998	1
ERBB2	HRNR	0.998	1
ERBB2	MED23	0.998	1
EYS	RBMX	0.998	1
FGFR2	KRAS	0.998	1
FGFR2	RUFY1	0.998	1
FGFR2	SMAD2	0.998	1
FGFR2	SMAD4	0.998	1
FOXA1	MYB	0.998	1
FOXA1	1q-Amp	0.998	1
FRMPD2	KRAS	0.998	1
FRMPD2	RB1	0.998	1
FRMPD2	RUFY1	0.998	1
GATA3	NCOR1	0.998	1
GATA3	Del_9q21.11	0.998	1
GPRIN2	KRAS	0.998	1
GPRIN2	SMAD2	0.998	1
ICOSLG	Amp_11q13.3	0.998	1
ICOSLG	Del_8p23.2	0.998	1
ICOSLG	Del_16q24.3	0.998	1
IL1RAP	MLL3	0.998	1
IL1RAP	SPEN	0.998	1
IL1RAP	TPP2	0.998	1
IRS4	SMAD2	0.998	1
IRS4	Amp_11p13	0.998	1
IRS4	Del_12q23.1	0.998	1
KCNN3	TFE3	0.998	1
KCNN3	Del_14q24.1	0.998	1
KCNN3	Del_21q11.2	0.998	1
KDM6A	MYH9	0.998	1
KRAS	RBMX	0.998	1
MAP3K1	ZFP36L1	0.998	1
MAP3K1	16q-Del	0.998	1
MLL3	20p-Amp	0.998	1
MUC6	NBPF9	0.998	1
MYH9	NCDN	0.998	1
MYH9	TAF1L	0.998	1
NCOR1	TFE3	0.998	1
NF1	PTEN	0.998	1
NLGN3	RUFY1	0.998	1
NLGN3	SMAD2	0.998	1
NLGN3	SMAD4	0.998	1
NLGN3	TCP11	0.998	1
NLGN3	TFE3	0.998	1
PIK3R1	RB1	0.998	1
PIK3R1	17q-Del	0.998	1
PTEN	TAF1L	0.998	1
PTPN22	20q-Amp	0.998	1
RBMX	RUFY1	0.998	1
RUFY1	TGS1	0.998	1
SMAD2	VCPIP1	0.998	1
SMAD2	Del_11q13.1	0.998	1
SMAD4	VCPIP1	0.998	1
SMAD4	18q-Del	0.998	1
SP3	TGS1	0.998	1
SP3	Del_14q24.1	0.998	1
SPEN	VCPIP1	0.998	1
TAF1L	ZBTB7C	0.998	1
TCP11	TGS1	0.998	1
TFE3	Del_5q21.3	0.998	1
TP53	20p-Amp	0.998	1
TP53	Amp_19q13.42	0.998	1
TP53	Amp_20q13.2	0.998	1
TP53	Del_2q37.3	0.998	1
TP53	Del_6p25.3	0.998	1
TPP2	VCPIP1	0.998	1
USP36	Del_6p25.3	0.998	1
VCPIP1	ZFP36L2	0.998	1
ZFP36L1	Del_6p25.3	0.998	1
ZFP36L2	Amp_10q22.3	0.998	1
16p-Amp	20q-Amp	0.998	1
16p-Amp	5p-Amp	0.998	1
17q-Amp	20p-Amp	0.998	1
20p-Amp	7p-Amp	0.998	1
20p-Amp	Amp_12q15	0.998	1
20q-Amp	18q-Del	0.998	1
7p-Amp	Amp_8q24.21	0.998	1
7q-Amp	Amp_3q26.32	0.998	1
8p-Amp	15q-Del	0.998	1
8p-Amp	5q-Del	0.998	1
8q-Amp	13q-Del	0.998	1
8q-Amp	Amp_19q13.42	0.998	1
8q-Amp	Del_19p13.3	0.998	1
11p-Del	17q-Del	0.998	1
11p-Del	6q-Del	0.998	1
11p-Del	Amp_19q12	0.998	1
11p-Del	Del_6q15	0.998	1
11q-Del	5q-Del	0.998	1
11q-Del	Del_17q21.31	0.998	1
13q-Del	Amp_8p11.23	0.998	1
13q-Del	Amp_19q12	0.998	1
13q-Del	Del_4q35.1	0.998	1
13q-Del	Del_19q13.32	0.998	1
14q-Del	1p-Del	0.998	1
14q-Del	Del_21q11.2	0.998	1
15q-Del	Amp_13q34	0.998	1
15q-Del	Del_6q15	0.998	1
16p-Del	8p-Del	0.998	1
16p-Del	9q-Del	0.998	1
16p-Del	Amp_13q34	0.998	1
16p-Del	Del_6q15	0.998	1
16p-Del	Del_12q23.1	0.998	1
17q-Del	8p-Del	0.998	1
18p-Del	Amp_11q13.3	0.998	1
18p-Del	Amp_17q12	0.998	1
18p-Del	Del_6q15	0.998	1
18q-Del	4q-Del	0.998	1
18q-Del	Amp_11q14.1	0.998	1
18q-Del	Del_9q21.11	0.998	1
18q-Del	Del_14q24.1	0.998	1
1p-Del	5q-Del	0.998	1
1p-Del	Amp_11q13.3	0.998	1
1p-Del	Del_4p16.3	0.998	1
1p-Del	Del_9q34.2	0.998	1
1p-Del	Del_14q24.1	0.998	1
1p-Del	Del_19p13.3	0.998	1
1q-Del	Del_1p22.1	0.998	1
1q-Del	Del_5q11.2	0.998	1
4p-Del	Del_7p22.3	0.998	1
4q-Del	Del_9p21.3	0.998	1
5q-Del	Amp_19p13.12	0.998	1
5q-Del	Del_9p21.3	0.998	1
5q-Del	Del_9q21.11	0.998	1
6q-Del	9q-Del	0.998	1
6q-Del	Del_2q37.3	0.998	1
8p-Del	Del_10q26.3	0.998	1
8p-Del	Del_21q11.2	0.998	1
9p-Del	Del_5q11.2	0.998	1
9p-Del	Del_12q23.1	0.998	1
9p-Del	Del_12q24.31	0.998	1
9q-Del	Amp_12p13.33	0.998	1
9q-Del	Del_1p22.1	0.998	1
9q-Del	Del_4q35.1	0.998	1
Amp_1p22.3	Del_15q13.1	0.998	1
Amp_1q44	Amp_3q26.32	0.998	1
Amp_1q44	Del_1p22.1	0.998	1
Amp_3q26.32	Del_20p13	0.998	1
Amp_4q13.3	Amp_15q26.3	0.998	1
Amp_4q13.3	Amp_20q13.2	0.998	1
Amp_6p23	Amp_19q12	0.998	1
Amp_6p23	Del_8p23.2	0.998	1
Amp_8p11.23	Del_9p23	0.998	1
Amp_8p11.21	Amp_11q14.1	0.998	1
Amp_8p11.21	Del_11q25	0.998	1
Amp_10p15.1	Amp_19p13.12	0.998	1
Amp_10p15.1	Del_19p13.3	0.998	1
Amp_11p13	Amp_15q26.3	0.998	1
Amp_11p13	Del_11q23.3	0.998	1
Amp_11q14.1	Amp_12q15	0.998	1
Amp_11q14.1	Del_10q26.3	0.998	1
Amp_12p13.33	Del_3p21.31	0.998	1
Amp_12q15	Del_18q23	0.998	1
Amp_13q34	Del_22q13.32	0.998	1
Amp_14q21.1	Del_2q37.3	0.998	1
Amp_15q26.3	Amp_19q13.42	0.998	1
Amp_15q26.3	Del_3p21.31	0.998	1
Amp_15q26.3	Del_11q23.3	0.998	1
Amp_17q12	Del_1p22.1	0.998	1
Amp_17q12	Del_9p23	0.998	1
Amp_17q23.1	Del_11p15.5	0.998	1
Amp_17q23.1	Del_19p13.3	0.998	1
Amp_19q12	Amp_20q13.2	0.998	1
Amp_19q12	Del_4p16.3	0.998	1
Amp_19q12	Del_11p15.5	0.998	1
Amp_20q13.2	Del_11p15.5	0.998	1
Amp_20q13.2	Del_20p13	0.998	1
Del_1p36.13	Del_12q23.1	0.998	1
Del_2q37.3	Del_6q15	0.998	1
Del_6p25.3	Del_9q21.11	0.998	1
Del_6p25.3	Del_10q23.31	0.998	1
Del_6q15	Del_9q34.2	0.998	1
Del_7p22.3	Del_9p23	0.998	1
Del_7p22.3	Del_9q34.2	0.998	1
Del_7p22.3	Del_16q24.3	0.998	1
Del_7q36.1	Del_10q23.31	0.998	1
Del_7q36.1	Del_10q26.3	0.998	1
Del_7q36.1	Del_12q23.1	0.998	1
Del_7q36.1	Del_16q24.3	0.998	1
Del_10q23.31	Del_11q13.1	0.998	1
Del_10q26.3	Del_12q23.1	0.998	1
Del_11q23.3	Del_12p13.1	0.998	1
Del_12q23.1	Del_13q14.2	0.998	1
Del_12q24.31	Del_13q14.2	0.998	1
Del_12q24.31	Del_16q24.3	0.998	1
Del_19q13.32	Del_22q13.32	0.998	1
ACTL6B	NBPF9	0.999	1
ACTL6B	ZNF362	0.999	1
APC	FRMPD2	0.999	1
APC	GPRIN2	0.999	1
APC	IRS4	0.999	1
APC	NLGN3	0.999	1
APC	PIK3R1	0.999	1
APC	RBMX	0.999	1
APC	SPEN	0.999	1
AQP12A	20p-Amp	0.999	1
AQP12A	18p-Del	0.999	1
AQP12A	18q-Del	0.999	1
ARID1A	MYH9	0.999	1
ARID1A	SMAD4	0.999	1
ARID1A	USP36	0.999	1
ARID1A	Amp_6p23	0.999	1
C17orf95	GPS2	0.999	1
C17orf95	IL1RAP	0.999	1
C17orf95	MYB	0.999	1
C17orf95	NCOR1	0.999	1
C17orf95	PTPN22	0.999	1
C17orf95	TGS1	0.999	1
C17orf95	TPP2	0.999	1
C17orf95	17q-Amp	0.999	1
CASZ1	FRMPD2	0.999	1
CASZ1	MUC6	0.999	1
CBFB	TBL1XR1	0.999	1
CDC42EP1	TGS1	0.999	1
CDC42EP1	USP36	0.999	1
CDC42EP1	Amp_13q34	0.999	1
CDC42EP1	Amp_14q21.1	0.999	1
CDH1	MYH9	0.999	1
CDH1	TBX3	0.999	1
CDH1	Amp_1q44	0.999	1
CDH1	Del_16q24.3	0.999	1
CDKN1B	RUFY1	0.999	1
CDKN1B	TCP11	0.999	1
ERBB2	MLL3	0.999	1
ERBB2	TBL1XR1	0.999	1
EYS	IL1RAP	0.999	1
EYS	Amp_10q22.3	0.999	1
EYS	Amp_20q13.2	0.999	1
FBXW7	HRNR	0.999	1
FBXW7	NCDN	0.999	1
FBXW7	PIK3R1	0.999	1
FOXA1	Del_11q13.1	0.999	1
FRMPD2	NCOR1	0.999	1
FRMPD2	PIK3R1	0.999	1
FRMPD2	TAF1L	0.999	1
FRMPD2	ZMYM3	0.999	1
GATA3	SP3	0.999	1
GATA3	22q-Del	0.999	1
GATA3	Amp_1q21.3	0.999	1
GATA3	Del_9p21.3	0.999	1
HRNR	16p-Del	0.999	1
ICOSLG	IL1RAP	0.999	1
ICOSLG	Del_11q13.1	0.999	1
IL1RAP	KRAS	0.999	1
IL1RAP	NF1	0.999	1
IL1RAP	RUFY1	0.999	1
IL1RAP	TBX3	0.999	1
IRS4	MYH9	0.999	1
KCNN3	Amp_10p15.1	0.999	1
KCNN3	Del_8p23.2	0.999	1
KDM6A	MED23	0.999	1
KDM6A	RBMX	0.999	1
KDM6A	SPEN	0.999	1
KDM6A	TGS1	0.999	1
KDM6A	ZMYM3	0.999	1
KDM6A	ZNF362	0.999	1
KRAS	SMAD2	0.999	1
KRAS	TPP2	0.999	1
MAP3K1	PAX2	0.999	1
MAP3K1	PIK3CA	0.999	1
MAP3K1	Del_16q24.3	0.999	1
MED23	ZBTB7C	0.999	1
MED23	ZNF362	0.999	1
MED23	18p-Del	0.999	1
MED23	6q-Del	0.999	1
MLL3	PIK3CA	0.999	1
MUC6	MYH9	0.999	1
MUC6	NCDN	0.999	1
MYB	PAX2	0.999	1
MYB	RB1	0.999	1
MYB	TAF1L	0.999	1
MYH9	NF1	0.999	1
MYH9	PIK3R1	0.999	1
MYH9	RBMX	0.999	1
MYH9	SPEN	0.999	1
MYH9	1q-Amp	0.999	1
NBPF9	ZFP36L1	0.999	1
NBPF9	1p-Del	0.999	1
NBPF9	1q-Del	0.999	1
NCDN	RBMX	0.999	1
NF1	SMAD2	0.999	1
NLGN3	TAF1L	0.999	1
NLGN3	ZNF362	0.999	1
PAX2	ZMYM3	0.999	1
PAX2	Del_7q36.1	0.999	1
PIK3CA	TAF1L	0.999	1
PIK3R1	ZMYM3	0.999	1
PTPN22	RUFY1	0.999	1
PTPN22	SP3	0.999	1
PTPN22	TCP11	0.999	1
PTPN22	20p-Amp	0.999	1
RB1	TP53	0.999	1
RB1	15q-Del	0.999	1
RB1	Del_7q36.1	0.999	1
RBMX	TAF1L	0.999	1
RBMX	Amp_10p15.1	0.999	1
RUFY1	SMAD2	0.999	1
RUFY1	SMAD4	0.999	1
RUFY1	TPP2	0.999	1
RUFY1	ZFP36L2	0.999	1
RUFY1	18p-Del	0.999	1
RUFY1	18q-Del	0.999	1
SMAD2	SPEN	0.999	1
SMAD2	TBX3	0.999	1
SMAD2	TFE3	0.999	1
SMAD2	TPP2	0.999	1
SMAD4	SP3	0.999	1
SMAD4	SPEN	0.999	1
SMAD4	TCP11	0.999	1
SMAD4	Del_12p13.1	0.999	1
SP3	SPEN	0.999	1
SP3	TBL1XR1	0.999	1
SPEN	TAF1L	0.999	1
SPEN	Amp_11p13	0.999	1
TBX3	ZFP36L1	0.999	1
TCP11	VCPIP1	0.999	1
TP53	Del_3p21.31	0.999	1
VCPIP1	20q-Amp	0.999	1
VCPIP1	Amp_19q13.42	0.999	1
ZFP36L1	14q-Del	0.999	1
ZFP36L1	Del_1p22.1	0.999	1
ZFP36L1	Del_14q24.1	0.999	1
ZFP36L1	Del_18q23	0.999	1
ZFP36L1	Del_20p13	0.999	1
ZMYM3	ZNF362	0.999	1
16p-Amp	8p-Amp	0.999	1
16p-Amp	Amp_8p11.23	0.999	1
16p-Amp	Del_16q24.3	0.999	1
17q-Amp	8q-Amp	0.999	1
17q-Amp	Amp_8p11.21	0.999	1
20p-Amp	5p-Amp	0.999	1
20p-Amp	7q-Amp	0.999	1
20p-Amp	9p-Del	0.999	1
20p-Amp	Amp_3q26.32	0.999	1
20p-Amp	Del_9p21.3	0.999	1
20q-Amp	Amp_14q21.1	0.999	1
20q-Amp	Amp_17q12	0.999	1
20q-Amp	Del_6q15	0.999	1
20q-Amp	Del_11q23.3	0.999	1
20q-Amp	Del_18q23	0.999	1
5p-Amp	Amp_8q24.21	0.999	1
5p-Amp	Amp_12q15	0.999	1
7p-Amp	Amp_3q26.32	0.999	1
7p-Amp	Amp_8p11.21	0.999	1
7q-Amp	Amp_1q44	0.999	1
7q-Amp	Amp_8p11.21	0.999	1
7q-Amp	Amp_20q13.2	0.999	1
8q-Amp	Amp_13q34	0.999	1
11p-Del	Amp_1q44	0.999	1
11p-Del	Amp_8q24.21	0.999	1
11p-Del	Amp_19p13.12	0.999	1
11p-Del	Del_5q11.2	0.999	1
11p-Del	Del_12q23.1	0.999	1
11p-Del	Del_12q24.31	0.999	1
11p-Del	Del_15q13.1	0.999	1
11p-Del	Del_16q24.3	0.999	1
11q-Del	14q-Del	0.999	1
11q-Del	18q-Del	0.999	1
11q-Del	4p-Del	0.999	1
11q-Del	Amp_8p11.23	0.999	1
11q-Del	Amp_8q24.21	0.999	1
11q-Del	Amp_20q13.2	0.999	1
11q-Del	Del_12q23.1	0.999	1
13q-Del	1p-Del	0.999	1
13q-Del	Amp_11q13.3	0.999	1
13q-Del	Amp_17q12	0.999	1
13q-Del	Del_5q21.3	0.999	1
14q-Del	Del_8p23.2	0.999	1
14q-Del	Del_11p15.5	0.999	1
15q-Del	1p-Del	0.999	1
15q-Del	Del_6p25.3	0.999	1
15q-Del	Del_9q34.2	0.999	1
15q-Del	Del_11q25	0.999	1
16p-Del	18p-Del	0.999	1
16p-Del	18q-Del	0.999	1
16p-Del	Amp_8q24.21	0.999	1
16p-Del	Amp_12p13.33	0.999	1
16p-Del	Del_4p16.3	0.999	1
16p-Del	Del_8p23.2	0.999	1
16p-Del	Del_9q21.11	0.999	1
16p-Del	Del_11q13.1	0.999	1
16q-Del	17q-Del	0.999	1
16q-Del	18q-Del	0.999	1
16q-Del	1p-Del	0.999	1
17p-Del	1p-Del	0.999	1
17p-Del	Del_6p25.3	0.999	1
17q-Del	5q-Del	0.999	1
17q-Del	Del_11q23.3	0.999	1
17q-Del	Del_19q13.32	0.999	1
18p-Del	9q-Del	0.999	1
18p-Del	Del_20p13	0.999	1
18q-Del	Amp_20q13.2	0.999	1
18q-Del	Del_4q35.1	0.999	1
18q-Del	Del_10q23.31	0.999	1
18q-Del	Del_11q13.1	0.999	1
1p-Del	9q-Del	0.999	1
1p-Del	Amp_1q21.3	0.999	1
1p-Del	Del_7p22.3	0.999	1
1p-Del	Del_11q13.1	0.999	1
1p-Del	Del_15q13.1	0.999	1
1q-Del	22q-Del	0.999	1
1q-Del	9p-Del	0.999	1
1q-Del	Amp_13q34	0.999	1
1q-Del	Del_9p23	0.999	1
1q-Del	Del_9p21.3	0.999	1
1q-Del	Del_11q23.3	0.999	1
22q-Del	4q-Del	0.999	1
22q-Del	Amp_8p11.23	0.999	1
22q-Del	Amp_14q21.1	0.999	1
22q-Del	Del_2q37.3	0.999	1
22q-Del	Del_4p16.3	0.999	1
22q-Del	Del_10q26.3	0.999	1
22q-Del	Del_11p15.5	0.999	1
22q-Del	Del_11q13.1	0.999	1
22q-Del	Del_19q13.32	0.999	1
22q-Del	Del_21q11.2	0.999	1
4p-Del	Amp_3p25.1	0.999	1
4p-Del	Del_7q36.1	0.999	1
4p-Del	Del_9q21.11	0.999	1
4q-Del	Amp_6p23	0.999	1
4q-Del	Del_6p25.3	0.999	1
4q-Del	Del_18q23	0.999	1
4q-Del	Del_21q11.2	0.999	1
4q-Del	Del_22q13.32	0.999	1
5q-Del	Del_12p13.1	0.999	1
5q-Del	Del_18q23	0.999	1
8p-Del	Amp_12q15	0.999	1
8p-Del	Del_9p23	0.999	1
8p-Del	Del_10q23.31	0.999	1
8p-Del	Del_12q24.31	0.999	1
8p-Del	Del_15q13.1	0.999	1
8p-Del	Del_16q24.3	0.999	1
8p-Del	Del_17q21.31	0.999	1
9p-Del	Del_4q35.1	0.999	1
9p-Del	Del_11q13.1	0.999	1
9p-Del	Del_12p13.1	0.999	1
9p-Del	Del_20p13	0.999	1
Amp_1p22.3	Amp_6p23	0.999	1
Amp_1q21.3	Amp_6p23	0.999	1
Amp_1q44	Del_16q24.3	0.999	1
Amp_3p25.1	Amp_6p23	0.999	1
Amp_3p25.1	Amp_14q21.1	0.999	1
Amp_3p25.1	Del_14q24.1	0.999	1
Amp_3q26.32	Amp_20q13.2	0.999	1
Amp_6p23	Amp_8p11.21	0.999	1
Amp_6q21	Amp_10p15.1	0.999	1
Amp_6q21	Del_9q34.2	0.999	1
Amp_6q21	Del_17q21.31	0.999	1
Amp_8p11.23	Amp_17q23.1	0.999	1
Amp_8p11.23	Amp_19q13.42	0.999	1
Amp_8p11.23	Del_13q14.2	0.999	1
Amp_8p11.23	Del_16q24.3	0.999	1
Amp_8p11.23	Del_19p13.3	0.999	1
Amp_8p11.21	Amp_10q22.3	0.999	1
Amp_8p11.21	Amp_14q21.1	0.999	1
Amp_8p11.21	Del_6q15	0.999	1
Amp_8q24.21	Amp_19q13.42	0.999	1
Amp_8q24.21	Del_7p22.3	0.999	1
Amp_8q24.21	Del_9p23	0.999	1
Amp_8q24.21	Del_12q23.1	0.999	1
Amp_8q24.21	Del_15q13.1	0.999	1
Amp_8q24.21	Del_18q23	0.999	1
Amp_10p15.1	Amp_10q22.3	0.999	1
Amp_10p15.1	Amp_19q13.42	0.999	1
Amp_10p15.1	Del_12q24.31	0.999	1
Amp_11q13.3	Amp_14q21.1	0.999	1
Amp_11q14.1	Del_4q35.1	0.999	1
Amp_11q14.1	Del_6p25.3	0.999	1
Amp_11q14.1	Del_9p23	0.999	1
Amp_11q14.1	Del_9q21.11	0.999	1
Amp_12p13.33	Amp_15q26.3	0.999	1
Amp_12p13.33	Del_4p16.3	0.999	1
Amp_12p13.33	Del_9q34.2	0.999	1
Amp_12q15	Del_8p23.2	0.999	1
Amp_13q34	Del_3p21.31	0.999	1
Amp_13q34	Del_10q26.3	0.999	1
Amp_13q34	Del_12q24.31	0.999	1
Amp_15q26.3	Del_5q21.3	0.999	1
Amp_17q23.1	Del_6q15	0.999	1
Amp_17q23.1	Del_6q27	0.999	1
Amp_17q23.1	Del_20p13	0.999	1
Amp_19p13.12	Del_5q11.2	0.999	1
Amp_19p13.12	Del_12q23.1	0.999	1
Amp_19p13.12	Del_14q24.1	0.999	1
Amp_19p13.12	Del_19q13.32	0.999	1
Amp_19q13.42	Del_19q13.32	0.999	1
Amp_20q13.2	Del_7p22.3	0.999	1
Amp_20q13.2	Del_11q23.3	0.999	1
Del_1p22.1	Del_9q21.11	0.999	1
Del_1p22.1	Del_9q34.2	0.999	1
Del_1p22.1	Del_12q24.31	0.999	1
Del_2q37.3	Del_10q23.31	0.999	1
Del_2q37.3	Del_12p13.1	0.999	1
Del_3p21.31	Del_6q15	0.999	1
Del_4p16.3	Del_6p25.3	0.999	1
Del_4p16.3	Del_6q27	0.999	1
Del_4p16.3	Del_7q36.1	0.999	1
Del_4p16.3	Del_9q34.2	0.999	1
Del_4p16.3	Del_12p13.1	0.999	1
Del_4q35.1	Del_12p13.1	0.999	1
Del_4q35.1	Del_21q11.2	0.999	1
Del_5q11.2	Del_11q25	0.999	1
Del_5q21.3	Del_6p25.3	0.999	1
Del_5q21.3	Del_6q27	0.999	1
Del_5q21.3	Del_7p22.3	0.999	1
Del_5q21.3	Del_9p23	0.999	1
Del_5q21.3	Del_9q21.11	0.999	1
Del_5q21.3	Del_11q25	0.999	1
Del_5q21.3	Del_18q23	0.999	1
Del_5q21.3	Del_22q13.32	0.999	1
Del_6p25.3	Del_10q26.3	0.999	1
Del_6p25.3	Del_11q25	0.999	1
Del_6p25.3	Del_15q13.1	0.999	1
Del_6p25.3	Del_18q23	0.999	1
Del_6q15	Del_17q21.31	0.999	1
Del_6q27	Del_9q34.2	0.999	1
Del_6q27	Del_18q23	0.999	1
Del_6q27	Del_21q11.2	0.999	1
Del_7p22.3	Del_9q21.11	0.999	1
Del_7q36.1	Del_11p15.5	0.999	1
Del_7q36.1	Del_11q23.3	0.999	1
Del_7q36.1	Del_11q25	0.999	1
Del_7q36.1	Del_15q13.1	0.999	1
Del_7q36.1	Del_17p12	0.999	1
Del_8p23.2	Del_17q21.31	0.999	1
Del_9q34.2	Del_12q23.1	0.999	1
Del_9q34.2	Del_16q24.3	0.999	1
Del_9q34.2	Del_18q23	0.999	1
Del_9q34.2	Del_19q13.32	0.999	1
Del_10q23.31	Del_12p13.1	0.999	1
Del_10q26.3	Del_22q13.32	0.999	1
Del_11p15.5	Del_12p13.1	0.999	1
Del_11q13.1	Del_20p13	0.999	1
Del_11q23.3	Del_12q23.1	0.999	1
Del_12p13.1	Del_18q23	0.999	1
Del_15q13.1	Del_19q13.32	0.999	1
Del_21q11.2	Del_22q13.32	0.999	1
ACTL6B	PAX2	1	1
ACTL6B	Del_8p23.2	1	1
APC	C17orf95	1	1
APC	CASZ1	1	1
APC	EYS	1	1
APC	FBXW7	1	1
APC	IL1RAP	1	1
APC	KDM6A	1	1
APC	MYH9	1	1
APC	NCOR1	1	1
APC	NF1	1	1
APC	SMAD2	1	1
APC	TFE3	1	1
APC	ZMYM3	1	1
AQP12A	GPRIN2	1	1
AQP12A	20q-Amp	1	1
ARID1A	KDM6A	1	1
ARID1A	MUC6	1	1
ARID1A	NCOR1	1	1
ARID1A	PTPN22	1	1
ARID1A	RUFY1	1	1
ARID1A	SPEN	1	1
ARID1A	17q-Amp	1	1
C17orf95	CASZ1	1	1
C17orf95	EYS	1	1
C17orf95	FGFR2	1	1
C17orf95	FOXA1	1	1
C17orf95	KRAS	1	1
C17orf95	NF1	1	1
C17orf95	RUFY1	1	1
C17orf95	SMAD2	1	1
C17orf95	SMAD4	1	1
C17orf95	SP3	1	1
C17orf95	SPEN	1	1
C17orf95	TAF1L	1	1
C17orf95	16p-Del	1	1
C17orf95	Amp_17q12	1	1
CASZ1	GPRIN2	1	1
CASZ1	IL1RAP	1	1
CASZ1	NF1	1	1
CASZ1	SMAD2	1	1
CASZ1	TPP2	1	1
CBFB	1q-Amp	1	1
CBFB	16q-Del	1	1
CBFB	Amp_1q21.3	1	1
CBFB	Amp_1q44	1	1
CBFB	Del_16q24.3	1	1
CDC42EP1	HRNR	1	1
CDC42EP1	SP3	1	1
CDC42EP1	TFE3	1	1
CDH1	ERBB2	1	1
CDH1	PIK3CA	1	1
CDH1	1q-Amp	1	1
CDH1	16q-Del	1	1
CTCF	Del_16q24.3	1	1
ERBB2	PIK3R1	1	1
ERBB2	RUNX1	1	1
ERBB2	SMAD2	1	1
ERBB2	TAF1L	1	1
ERBB2	TFE3	1	1
EYS	PTPN22	1	1
EYS	SMAD2	1	1
EYS	SPEN	1	1
EYS	TAF1L	1	1
EYS	TP53	1	1
EYS	TPP2	1	1
EYS	Amp_11q13.3	1	1
EYS	Del_10q26.3	1	1
EYS	Del_18q23	1	1
FBXW7	FRMPD2	1	1
FBXW7	IL1RAP	1	1
FBXW7	IRS4	1	1
FBXW7	SMAD2	1	1
FBXW7	ZMYM3	1	1
FOXA1	MYH9	1	1
FRMPD2	GPRIN2	1	1
FRMPD2	SMAD2	1	1
FRMPD2	SPEN	1	1
GATA3	1q-Amp	1	1
GATA3	Amp_17q23.1	1	1
GPRIN2	IL1RAP	1	1
ICOSLG	MYH9	1	1
ICOSLG	16q-Del	1	1
IL1RAP	MYH9	1	1
IL1RAP	NCOR1	1	1
IL1RAP	PIK3R1	1	1
IL1RAP	SMAD2	1	1
IRS4	RBMX	1	1
IRS4	TFE3	1	1
KCNN3	NCDN	1	1
KDM6A	NLGN3	1	1
KDM6A	PTPN22	1	1
KDM6A	SMAD4	1	1
KDM6A	TFE3	1	1
KRAS	PIK3CA	1	1
KRAS	RUFY1	1	1
KRAS	TBX3	1	1
MAP2K4	PIK3CA	1	1
MAP2K4	ZNF362	1	1
MAP2K4	Del_17p12	1	1
MAP3K1	16p-Amp	1	1
MLL3	SPEN	1	1
MLL3	TGS1	1	1
MUC6	Del_17q21.31	1	1
NCOR1	RBMX	1	1
NCOR1	SMAD2	1	1
NCOR1	SPEN	1	1
NF1	RUFY1	1	1
NF1	TAF1L	1	1
NLGN3	ZMYM3	1	1
PAX2	ZNF362	1	1
PIK3CA	SMAD2	1	1
PIK3CA	SPEN	1	1
PIK3CA	Del_16q24.3	1	1
PTEN	RUFY1	1	1
PTEN	Del_10q23.31	1	1
PTPN22	SMAD4	1	1
PTPN22	SPEN	1	1
PTPN22	TGS1	1	1
PTPN22	VCPIP1	1	1
PTPN22	Amp_20q13.2	1	1
RAB42	Amp_1q21.3	1	1
RB1	Amp_13q34	1	1
RBMX	SPEN	1	1
RUFY1	RUNX1	1	1
RUFY1	SPEN	1	1
RUFY1	TAF1L	1	1
RUFY1	TCP11	1	1
RUFY1	VCPIP1	1	1
RUFY1	ZBTB7C	1	1
SMAD4	TGS1	1	1
SMAD4	Del_18q23	1	1
SPEN	TGS1	1	1
TAF1L	ZMYM3	1	1
TBX3	1q-Amp	1	1
TFE3	ZNF362	1	1
TP53	8q-Amp	1	1
TP53	14q-Del	1	1
TP53	17q-Del	1	1
TP53	4p-Del	1	1
TP53	4q-Del	1	1
TP53	5q-Del	1	1
TP53	Amp_3q26.32	1	1
TP53	Amp_6p23	1	1
TP53	Amp_6q21	1	1
TP53	Amp_8q24.21	1	1
TP53	Amp_10p15.1	1	1
TP53	Amp_10q22.3	1	1
TP53	Amp_12p13.33	1	1
TP53	Amp_13q34	1	1
TP53	Amp_17q12	1	1
TP53	Amp_19p13.12	1	1
TP53	Amp_19q12	1	1
TP53	Del_4p16.3	1	1
TP53	Del_4q35.1	1	1
TP53	Del_5q11.2	1	1
TP53	Del_5q21.3	1	1
TP53	Del_9q34.2	1	1
TP53	Del_10q23.31	1	1
TP53	Del_10q26.3	1	1
TP53	Del_11p15.5	1	1
TP53	Del_14q24.1	1	1
TP53	Del_15q13.1	1	1
TP53	Del_17q21.31	1	1
TP53	Del_18q23	1	1
TP53	Del_19p13.3	1	1
TP53	Del_20p13	1	1
TP53	Del_21q11.2	1	1
USP36	Del_3p21.31	1	1
VCPIP1	ZBTB7C	1	1
ZBTB7C	ZFP36L2	1	1
ZFP36L1	1p-Del	1	1
ZFP36L1	Del_13q14.2	1	1
16p-Amp	1q-Amp	1	1
16p-Amp	7p-Amp	1	1
16p-Amp	8q-Amp	1	1
16p-Amp	Amp_8p11.21	1	1
17q-Amp	20q-Amp	1	1
17q-Amp	8p-Del	1	1
17q-Amp	Amp_8q24.21	1	1
17q-Amp	Amp_14q21.1	1	1
17q-Amp	Amp_17q12	1	1
17q-Amp	Amp_17q23.1	1	1
17q-Amp	Amp_20q13.2	1	1
17q-Amp	Del_8p23.2	1	1
17q-Amp	Del_17p12	1	1
1q-Amp	16q-Del	1	1
1q-Amp	Amp_1p22.3	1	1
1q-Amp	Amp_1q21.3	1	1
1q-Amp	Amp_1q44	1	1
1q-Amp	Del_16q24.3	1	1
20p-Amp	20q-Amp	1	1
20p-Amp	8p-Amp	1	1
20p-Amp	8q-Amp	1	1
20p-Amp	13q-Del	1	1
20p-Amp	Amp_8p11.23	1	1
20p-Amp	Amp_8q24.21	1	1
20p-Amp	Amp_11q13.3	1	1
20p-Amp	Amp_17q23.1	1	1
20p-Amp	Amp_20q13.2	1	1
20p-Amp	Del_8p23.2	1	1
20p-Amp	Del_9p23	1	1
20p-Amp	Del_21q11.2	1	1
20q-Amp	5p-Amp	1	1
20q-Amp	7q-Amp	1	1
20q-Amp	8p-Amp	1	1
20q-Amp	8q-Amp	1	1
20q-Amp	13q-Del	1	1
20q-Amp	8p-Del	1	1
20q-Amp	9p-Del	1	1
20q-Amp	Amp_3q26.32	1	1
20q-Amp	Amp_8p11.23	1	1
20q-Amp	Amp_8q24.21	1	1
20q-Amp	Amp_11q13.3	1	1
20q-Amp	Amp_12q15	1	1
20q-Amp	Amp_17q23.1	1	1
20q-Amp	Amp_20q13.2	1	1
20q-Amp	Del_8p23.2	1	1
20q-Amp	Del_9p23	1	1
20q-Amp	Del_9p21.3	1	1
20q-Amp	Del_13q14.2	1	1
20q-Amp	Del_21q11.2	1	1
5p-Amp	Amp_1q21.3	1	1
7p-Amp	7q-Amp	1	1
7p-Amp	Amp_8p11.23	1	1
7p-Amp	Amp_14q21.1	1	1
7q-Amp	Amp_1q21.3	1	1
7q-Amp	Amp_8p11.23	1	1
7q-Amp	Amp_11p13	1	1
7q-Amp	Amp_19q13.42	1	1
8p-Amp	8q-Amp	1	1
8p-Amp	Amp_1p22.3	1	1
8p-Amp	Amp_8p11.23	1	1
8p-Amp	Amp_8p11.21	1	1
8p-Amp	Amp_8q24.21	1	1
8p-Amp	Amp_20q13.2	1	1
8p-Amp	Del_5q11.2	1	1
8q-Amp	Amp_1p22.3	1	1
8q-Amp	Amp_4q13.3	1	1
8q-Amp	Amp_6p23	1	1
8q-Amp	Amp_8p11.23	1	1
8q-Amp	Amp_8p11.21	1	1
8q-Amp	Amp_8q24.21	1	1
8q-Amp	Amp_10p15.1	1	1
8q-Amp	Amp_11q13.3	1	1
8q-Amp	Amp_12q15	1	1
8q-Amp	Amp_14q21.1	1	1
8q-Amp	Amp_17q12	1	1
8q-Amp	Amp_17q23.1	1	1
8q-Amp	Amp_20q13.2	1	1
8q-Amp	Del_8p23.2	1	1
8q-Amp	Del_13q14.2	1	1
11p-Del	11q-Del	1	1
11p-Del	13q-Del	1	1
11p-Del	14q-Del	1	1
11p-Del	15q-Del	1	1
11p-Del	16p-Del	1	1
11p-Del	17p-Del	1	1
11p-Del	18p-Del	1	1
11p-Del	1p-Del	1	1
11p-Del	22q-Del	1	1
11p-Del	4p-Del	1	1
11p-Del	4q-Del	1	1
11p-Del	5q-Del	1	1
11p-Del	8p-Del	1	1
11p-Del	9p-Del	1	1
11p-Del	9q-Del	1	1
11p-Del	Amp_11q13.3	1	1
11p-Del	Amp_11q14.1	1	1
11p-Del	Del_1p36.13	1	1
11p-Del	Del_1p22.1	1	1
11p-Del	Del_3p21.31	1	1
11p-Del	Del_4p16.3	1	1
11p-Del	Del_4q35.1	1	1
11p-Del	Del_5q21.3	1	1
11p-Del	Del_6p25.3	1	1
11p-Del	Del_6q27	1	1
11p-Del	Del_7p22.3	1	1
11p-Del	Del_8p23.2	1	1
11p-Del	Del_9p23	1	1
11p-Del	Del_9p21.3	1	1
11p-Del	Del_9q21.11	1	1
11p-Del	Del_9q34.2	1	1
11p-Del	Del_10q23.31	1	1
11p-Del	Del_10q26.3	1	1
11p-Del	Del_11p15.5	1	1
11p-Del	Del_11q13.1	1	1
11p-Del	Del_11q23.3	1	1
11p-Del	Del_11q25	1	1
11p-Del	Del_13q14.2	1	1
11p-Del	Del_14q24.1	1	1
11p-Del	Del_17p12	1	1
11p-Del	Del_17q21.31	1	1
11p-Del	Del_22q13.32	1	1
11q-Del	13q-Del	1	1
11q-Del	15q-Del	1	1
11q-Del	16p-Del	1	1
11q-Del	16q-Del	1	1
11q-Del	17p-Del	1	1
11q-Del	18p-Del	1	1
11q-Del	1p-Del	1	1
11q-Del	22q-Del	1	1
11q-Del	6q-Del	1	1
11q-Del	8p-Del	1	1
11q-Del	9p-Del	1	1
11q-Del	9q-Del	1	1
11q-Del	Amp_11q13.3	1	1
11q-Del	Amp_11q14.1	1	1
11q-Del	Amp_17q23.1	1	1
11q-Del	Del_1p36.13	1	1
11q-Del	Del_1p22.1	1	1
11q-Del	Del_3p21.31	1	1
11q-Del	Del_6p25.3	1	1
11q-Del	Del_6q15	1	1
11q-Del	Del_6q27	1	1
11q-Del	Del_7p22.3	1	1
11q-Del	Del_8p23.2	1	1
11q-Del	Del_9p23	1	1
11q-Del	Del_9p21.3	1	1
11q-Del	Del_9q21.11	1	1
11q-Del	Del_9q34.2	1	1
11q-Del	Del_10q23.31	1	1
11q-Del	Del_10q26.3	1	1
11q-Del	Del_11p15.5	1	1
11q-Del	Del_11q13.1	1	1
11q-Del	Del_11q23.3	1	1
11q-Del	Del_11q25	1	1
11q-Del	Del_13q14.2	1	1
11q-Del	Del_14q24.1	1	1
11q-Del	Del_16q24.3	1	1
11q-Del	Del_17p12	1	1
11q-Del	Del_19p13.3	1	1
11q-Del	Del_22q13.32	1	1
13q-Del	14q-Del	1	1
13q-Del	15q-Del	1	1
13q-Del	16p-Del	1	1
13q-Del	16q-Del	1	1
13q-Del	17p-Del	1	1
13q-Del	17q-Del	1	1
13q-Del	18p-Del	1	1
13q-Del	18q-Del	1	1
13q-Del	22q-Del	1	1
13q-Del	4p-Del	1	1
13q-Del	4q-Del	1	1
13q-Del	6q-Del	1	1
13q-Del	8p-Del	1	1
13q-Del	9p-Del	1	1
13q-Del	9q-Del	1	1
13q-Del	Amp_6p23	1	1
13q-Del	Amp_8p11.21	1	1
13q-Del	Amp_8q24.21	1	1
13q-Del	Amp_17q23.1	1	1
13q-Del	Amp_20q13.2	1	1
13q-Del	Del_1p36.13	1	1
13q-Del	Del_1p22.1	1	1
13q-Del	Del_2q37.3	1	1
13q-Del	Del_3p21.31	1	1
13q-Del	Del_4p16.3	1	1
13q-Del	Del_5q11.2	1	1
13q-Del	Del_6p25.3	1	1
13q-Del	Del_6q15	1	1
13q-Del	Del_6q27	1	1
13q-Del	Del_7p22.3	1	1
13q-Del	Del_8p23.2	1	1
13q-Del	Del_9p23	1	1
13q-Del	Del_9p21.3	1	1
13q-Del	Del_9q21.11	1	1
13q-Del	Del_9q34.2	1	1
13q-Del	Del_10q23.31	1	1
13q-Del	Del_10q26.3	1	1
13q-Del	Del_11p15.5	1	1
13q-Del	Del_11q13.1	1	1
13q-Del	Del_11q23.3	1	1
13q-Del	Del_11q25	1	1
13q-Del	Del_12p13.1	1	1
13q-Del	Del_13q14.2	1	1
13q-Del	Del_14q24.1	1	1
13q-Del	Del_15q13.1	1	1
13q-Del	Del_16q24.3	1	1
13q-Del	Del_17p12	1	1
13q-Del	Del_17q21.31	1	1
13q-Del	Del_18q23	1	1
13q-Del	Del_19p13.3	1	1
13q-Del	Del_20p13	1	1
13q-Del	Del_21q11.2	1	1
13q-Del	Del_22q13.32	1	1
14q-Del	15q-Del	1	1
14q-Del	16p-Del	1	1
14q-Del	17p-Del	1	1
14q-Del	18p-Del	1	1
14q-Del	18q-Del	1	1
14q-Del	22q-Del	1	1
14q-Del	4p-Del	1	1
14q-Del	4q-Del	1	1
14q-Del	5q-Del	1	1
14q-Del	6q-Del	1	1
14q-Del	9p-Del	1	1
14q-Del	9q-Del	1	1
14q-Del	Amp_3p25.1	1	1
14q-Del	Amp_12p13.33	1	1
14q-Del	Del_1p36.13	1	1
14q-Del	Del_1p22.1	1	1
14q-Del	Del_2q37.3	1	1
14q-Del	Del_3p21.31	1	1
14q-Del	Del_4p16.3	1	1
14q-Del	Del_4q35.1	1	1
14q-Del	Del_5q11.2	1	1
14q-Del	Del_5q21.3	1	1
14q-Del	Del_6p25.3	1	1
14q-Del	Del_6q15	1	1
14q-Del	Del_6q27	1	1
14q-Del	Del_7p22.3	1	1
14q-Del	Del_9p23	1	1
14q-Del	Del_9p21.3	1	1
14q-Del	Del_9q21.11	1	1
14q-Del	Del_9q34.2	1	1
14q-Del	Del_10q23.31	1	1
14q-Del	Del_10q26.3	1	1
14q-Del	Del_11q23.3	1	1
14q-Del	Del_11q25	1	1
14q-Del	Del_12q24.31	1	1
14q-Del	Del_13q14.2	1	1
14q-Del	Del_14q24.1	1	1
14q-Del	Del_15q13.1	1	1
14q-Del	Del_17p12	1	1
14q-Del	Del_17q21.31	1	1
14q-Del	Del_18q23	1	1
14q-Del	Del_19p13.3	1	1
14q-Del	Del_19q13.32	1	1
14q-Del	Del_20p13	1	1
14q-Del	Del_22q13.32	1	1
15q-Del	16p-Del	1	1
15q-Del	17q-Del	1	1
15q-Del	22q-Del	1	1
15q-Del	4p-Del	1	1
15q-Del	4q-Del	1	1
15q-Del	5q-Del	1	1
15q-Del	9p-Del	1	1
15q-Del	Amp_1p22.3	1	1
15q-Del	Amp_6p23	1	1
15q-Del	Del_1p36.13	1	1
15q-Del	Del_1p22.1	1	1
15q-Del	Del_2q37.3	1	1
15q-Del	Del_3p21.31	1	1
15q-Del	Del_4p16.3	1	1
15q-Del	Del_4q35.1	1	1
15q-Del	Del_5q11.2	1	1
15q-Del	Del_5q21.3	1	1
15q-Del	Del_6q27	1	1
15q-Del	Del_7p22.3	1	1
15q-Del	Del_9p23	1	1
15q-Del	Del_9p21.3	1	1
15q-Del	Del_9q21.11	1	1
15q-Del	Del_10q26.3	1	1
15q-Del	Del_11p15.5	1	1
15q-Del	Del_11q23.3	1	1
15q-Del	Del_12q23.1	1	1
15q-Del	Del_12q24.31	1	1
15q-Del	Del_13q14.2	1	1
15q-Del	Del_14q24.1	1	1
15q-Del	Del_15q13.1	1	1
15q-Del	Del_17p12	1	1
15q-Del	Del_17q21.31	1	1
15q-Del	Del_19p13.3	1	1
15q-Del	Del_21q11.2	1	1
15q-Del	Del_22q13.32	1	1
16p-Del	16q-Del	1	1
16p-Del	17p-Del	1	1
16p-Del	17q-Del	1	1
16p-Del	1q-Del	1	1
16p-Del	22q-Del	1	1
16p-Del	4p-Del	1	1
16p-Del	4q-Del	1	1
16p-Del	5q-Del	1	1
16p-Del	9p-Del	1	1
16p-Del	Del_2q37.3	1	1
16p-Del	Del_3p21.31	1	1
16p-Del	Del_4q35.1	1	1
16p-Del	Del_5q11.2	1	1
16p-Del	Del_5q21.3	1	1
16p-Del	Del_7p22.3	1	1
16p-Del	Del_9p23	1	1
16p-Del	Del_9p21.3	1	1
16p-Del	Del_9q34.2	1	1
16p-Del	Del_10q23.31	1	1
16p-Del	Del_10q26.3	1	1
16p-Del	Del_11p15.5	1	1
16p-Del	Del_11q23.3	1	1
16p-Del	Del_11q25	1	1
16p-Del	Del_13q14.2	1	1
16p-Del	Del_14q24.1	1	1
16p-Del	Del_15q13.1	1	1
16p-Del	Del_16q24.3	1	1
16p-Del	Del_17p12	1	1
16p-Del	Del_17q21.31	1	1
16p-Del	Del_19p13.3	1	1
16p-Del	Del_20p13	1	1
16p-Del	Del_22q13.32	1	1
16q-Del	17p-Del	1	1
16q-Del	22q-Del	1	1
16q-Del	6q-Del	1	1
16q-Del	Amp_1q21.3	1	1
16q-Del	Amp_1q44	1	1
16q-Del	Del_1p36.13	1	1
16q-Del	Del_1p22.1	1	1
16q-Del	Del_6q15	1	1
16q-Del	Del_6q27	1	1
16q-Del	Del_11q13.1	1	1
16q-Del	Del_11q23.3	1	1
16q-Del	Del_11q25	1	1
16q-Del	Del_13q14.2	1	1
16q-Del	Del_16q24.3	1	1
16q-Del	Del_17p12	1	1
16q-Del	Del_22q13.32	1	1
17p-Del	17q-Del	1	1
17p-Del	18p-Del	1	1
17p-Del	18q-Del	1	1
17p-Del	22q-Del	1	1
17p-Del	4p-Del	1	1
17p-Del	4q-Del	1	1
17p-Del	5q-Del	1	1
17p-Del	6q-Del	1	1
17p-Del	8p-Del	1	1
17p-Del	9p-Del	1	1
17p-Del	9q-Del	1	1
17p-Del	Amp_17q12	1	1
17p-Del	Amp_17q23.1	1	1
17p-Del	Del_1p36.13	1	1
17p-Del	Del_1p22.1	1	1
17p-Del	Del_2q37.3	1	1
17p-Del	Del_3p21.31	1	1
17p-Del	Del_4p16.3	1	1
17p-Del	Del_4q35.1	1	1
17p-Del	Del_5q11.2	1	1
17p-Del	Del_5q21.3	1	1
17p-Del	Del_6q15	1	1
17p-Del	Del_6q27	1	1
17p-Del	Del_7p22.3	1	1
17p-Del	Del_8p23.2	1	1
17p-Del	Del_9p23	1	1
17p-Del	Del_9p21.3	1	1
17p-Del	Del_9q21.11	1	1
17p-Del	Del_9q34.2	1	1
17p-Del	Del_10q23.31	1	1
17p-Del	Del_10q26.3	1	1
17p-Del	Del_11p15.5	1	1
17p-Del	Del_11q13.1	1	1
17p-Del	Del_11q23.3	1	1
17p-Del	Del_11q25	1	1
17p-Del	Del_12p13.1	1	1
17p-Del	Del_12q23.1	1	1
17p-Del	Del_12q24.31	1	1
17p-Del	Del_13q14.2	1	1
17p-Del	Del_14q24.1	1	1
17p-Del	Del_15q13.1	1	1
17p-Del	Del_16q24.3	1	1
17p-Del	Del_17p12	1	1
17p-Del	Del_17q21.31	1	1
17p-Del	Del_18q23	1	1
17p-Del	Del_19p13.3	1	1
17p-Del	Del_19q13.32	1	1
17p-Del	Del_20p13	1	1
17p-Del	Del_21q11.2	1	1
17p-Del	Del_22q13.32	1	1
17q-Del	18p-Del	1	1
17q-Del	18q-Del	1	1
17q-Del	22q-Del	1	1
17q-Del	4p-Del	1	1
17q-Del	4q-Del	1	1
17q-Del	9p-Del	1	1
17q-Del	9q-Del	1	1
17q-Del	Amp_17q12	1	1
17q-Del	Del_1p36.13	1	1
17q-Del	Del_2q37.3	1	1
17q-Del	Del_3p21.31	1	1
17q-Del	Del_4p16.3	1	1
17q-Del	Del_4q35.1	1	1
17q-Del	Del_5q11.2	1	1
17q-Del	Del_7p22.3	1	1
17q-Del	Del_8p23.2	1	1
17q-Del	Del_9p23	1	1
17q-Del	Del_9p21.3	1	1
17q-Del	Del_9q21.11	1	1
17q-Del	Del_9q34.2	1	1
17q-Del	Del_10q26.3	1	1
17q-Del	Del_11p15.5	1	1
17q-Del	Del_12q23.1	1	1
17q-Del	Del_12q24.31	1	1
17q-Del	Del_13q14.2	1	1
17q-Del	Del_14q24.1	1	1
17q-Del	Del_15q13.1	1	1
17q-Del	Del_16q24.3	1	1
17q-Del	Del_17p12	1	1
17q-Del	Del_17q21.31	1	1
17q-Del	Del_18q23	1	1
17q-Del	Del_19p13.3	1	1
17q-Del	Del_20p13	1	1
17q-Del	Del_21q11.2	1	1
17q-Del	Del_22q13.32	1	1
18p-Del	18q-Del	1	1
18p-Del	1p-Del	1	1
18p-Del	22q-Del	1	1
18p-Del	4p-Del	1	1
18p-Del	4q-Del	1	1
18p-Del	9p-Del	1	1
18p-Del	Del_1p36.13	1	1
18p-Del	Del_1p22.1	1	1
18p-Del	Del_2q37.3	1	1
18p-Del	Del_3p21.31	1	1
18p-Del	Del_4p16.3	1	1
18p-Del	Del_4q35.1	1	1
18p-Del	Del_9p23	1	1
18p-Del	Del_9p21.3	1	1
18p-Del	Del_9q21.11	1	1
18p-Del	Del_9q34.2	1	1
18p-Del	Del_10q23.31	1	1
18p-Del	Del_11p15.5	1	1
18p-Del	Del_11q13.1	1	1
18p-Del	Del_11q23.3	1	1
18p-Del	Del_11q25	1	1
18p-Del	Del_12q23.1	1	1
18p-Del	Del_12q24.31	1	1
18p-Del	Del_13q14.2	1	1
18p-Del	Del_14q24.1	1	1
18p-Del	Del_16q24.3	1	1
18p-Del	Del_17p12	1	1
18p-Del	Del_17q21.31	1	1
18p-Del	Del_18q23	1	1
18p-Del	Del_19p13.3	1	1
18p-Del	Del_22q13.32	1	1
18q-Del	1p-Del	1	1
18q-Del	22q-Del	1	1
18q-Del	4p-Del	1	1
18q-Del	9p-Del	1	1
18q-Del	Del_1p36.13	1	1
18q-Del	Del_1p22.1	1	1
18q-Del	Del_2q37.3	1	1
18q-Del	Del_3p21.31	1	1
18q-Del	Del_4p16.3	1	1
18q-Del	Del_6q15	1	1
18q-Del	Del_6q27	1	1
18q-Del	Del_9p23	1	1
18q-Del	Del_9p21.3	1	1
18q-Del	Del_11q23.3	1	1
18q-Del	Del_11q25	1	1
18q-Del	Del_12q23.1	1	1
18q-Del	Del_12q24.31	1	1
18q-Del	Del_13q14.2	1	1
18q-Del	Del_16q24.3	1	1
18q-Del	Del_17p12	1	1
18q-Del	Del_17q21.31	1	1
18q-Del	Del_18q23	1	1
18q-Del	Del_19p13.3	1	1
18q-Del	Del_20p13	1	1
18q-Del	Del_22q13.32	1	1
1p-Del	1q-Del	1	1
1p-Del	22q-Del	1	1
1p-Del	9p-Del	1	1
1p-Del	Amp_11q14.1	1	1
1p-Del	Del_1p36.13	1	1
1p-Del	Del_1p22.1	1	1
1p-Del	Del_2q37.3	1	1
1p-Del	Del_3p21.31	1	1
1p-Del	Del_9p21.3	1	1
1p-Del	Del_11q23.3	1	1
1p-Del	Del_11q25	1	1
1p-Del	Del_13q14.2	1	1
1p-Del	Del_16q24.3	1	1
1p-Del	Del_18q23	1	1
1p-Del	Del_22q13.32	1	1
1q-Del	5q-Del	1	1
1q-Del	Del_1p36.13	1	1
1q-Del	Del_2q37.3	1	1
1q-Del	Del_3p21.31	1	1
1q-Del	Del_5q21.3	1	1
1q-Del	Del_12p13.1	1	1
1q-Del	Del_21q11.2	1	1
1q-Del	Del_22q13.32	1	1
22q-Del	4p-Del	1	1
22q-Del	6q-Del	1	1
22q-Del	8p-Del	1	1
22q-Del	9p-Del	1	1
22q-Del	9q-Del	1	1
22q-Del	Del_1p36.13	1	1
22q-Del	Del_1p22.1	1	1
22q-Del	Del_3p21.31	1	1
22q-Del	Del_6p25.3	1	1
22q-Del	Del_6q15	1	1
22q-Del	Del_6q27	1	1
22q-Del	Del_8p23.2	1	1
22q-Del	Del_9p23	1	1
22q-Del	Del_9p21.3	1	1
22q-Del	Del_9q21.11	1	1
22q-Del	Del_9q34.2	1	1
22q-Del	Del_11q23.3	1	1
22q-Del	Del_11q25	1	1
22q-Del	Del_12p13.1	1	1
22q-Del	Del_13q14.2	1	1
22q-Del	Del_14q24.1	1	1
22q-Del	Del_15q13.1	1	1
22q-Del	Del_16q24.3	1	1
22q-Del	Del_17p12	1	1
22q-Del	Del_17q21.31	1	1
22q-Del	Del_18q23	1	1
22q-Del	Del_19p13.3	1	1
22q-Del	Del_20p13	1	1
22q-Del	Del_22q13.32	1	1
4p-Del	4q-Del	1	1
4p-Del	5q-Del	1	1
4p-Del	8p-Del	1	1
4p-Del	9p-Del	1	1
4p-Del	9q-Del	1	1
4p-Del	Amp_3q26.32	1	1
4p-Del	Amp_6p23	1	1
4p-Del	Amp_6q21	1	1
4p-Del	Amp_10p15.1	1	1
4p-Del	Amp_12p13.33	1	1
4p-Del	Amp_13q34	1	1
4p-Del	Del_1p36.13	1	1
4p-Del	Del_1p22.1	1	1
4p-Del	Del_2q37.3	1	1
4p-Del	Del_3p21.31	1	1
4p-Del	Del_4p16.3	1	1
4p-Del	Del_4q35.1	1	1
4p-Del	Del_5q11.2	1	1
4p-Del	Del_5q21.3	1	1
4p-Del	Del_6p25.3	1	1
4p-Del	Del_8p23.2	1	1
4p-Del	Del_9p23	1	1
4p-Del	Del_9p21.3	1	1
4p-Del	Del_9q34.2	1	1
4p-Del	Del_10q23.31	1	1
4p-Del	Del_10q26.3	1	1
4p-Del	Del_11p15.5	1	1
4p-Del	Del_11q23.3	1	1
4p-Del	Del_11q25	1	1
4p-Del	Del_12p13.1	1	1
4p-Del	Del_12q23.1	1	1
4p-Del	Del_12q24.31	1	1
4p-Del	Del_13q14.2	1	1
4p-Del	Del_14q24.1	1	1
4p-Del	Del_15q13.1	1	1
4p-Del	Del_17p12	1	1
4p-Del	Del_17q21.31	1	1
4p-Del	Del_18q23	1	1
4p-Del	Del_19p13.3	1	1
4p-Del	Del_19q13.32	1	1
4p-Del	Del_20p13	1	1
4p-Del	Del_21q11.2	1	1
4p-Del	Del_22q13.32	1	1
4q-Del	5q-Del	1	1
4q-Del	9p-Del	1	1
4q-Del	9q-Del	1	1
4q-Del	Amp_3p25.1	1	1
4q-Del	Amp_3q26.32	1	1
4q-Del	Amp_6q21	1	1
4q-Del	Amp_12p13.33	1	1
4q-Del	Del_1p36.13	1	1
4q-Del	Del_1p22.1	1	1
4q-Del	Del_2q37.3	1	1
4q-Del	Del_3p21.31	1	1
4q-Del	Del_4p16.3	1	1
4q-Del	Del_4q35.1	1	1
4q-Del	Del_5q11.2	1	1
4q-Del	Del_5q21.3	1	1
4q-Del	Del_8p23.2	1	1
4q-Del	Del_9p23	1	1
4q-Del	Del_9q21.11	1	1
4q-Del	Del_9q34.2	1	1
4q-Del	Del_10q23.31	1	1
4q-Del	Del_10q26.3	1	1
4q-Del	Del_11p15.5	1	1
4q-Del	Del_11q23.3	1	1
4q-Del	Del_11q25	1	1
4q-Del	Del_12q23.1	1	1
4q-Del	Del_12q24.31	1	1
4q-Del	Del_13q14.2	1	1
4q-Del	Del_14q24.1	1	1
4q-Del	Del_15q13.1	1	1
4q-Del	Del_17p12	1	1
4q-Del	Del_17q21.31	1	1
4q-Del	Del_19p13.3	1	1
4q-Del	Del_19q13.32	1	1
4q-Del	Del_20p13	1	1
5q-Del	9q-Del	1	1
5q-Del	Amp_1p22.3	1	1
5q-Del	Amp_6q21	1	1
5q-Del	Amp_8q24.21	1	1
5q-Del	Amp_10p15.1	1	1
5q-Del	Amp_11p13	1	1
5q-Del	Amp_12p13.33	1	1
5q-Del	Amp_13q34	1	1
5q-Del	Amp_15q26.3	1	1
5q-Del	Del_1p36.13	1	1
5q-Del	Del_2q37.3	1	1
5q-Del	Del_3p21.31	1	1
5q-Del	Del_4p16.3	1	1
5q-Del	Del_4q35.1	1	1
5q-Del	Del_5q11.2	1	1
5q-Del	Del_5q21.3	1	1
5q-Del	Del_8p23.2	1	1
5q-Del	Del_9q34.2	1	1
5q-Del	Del_10q23.31	1	1
5q-Del	Del_10q26.3	1	1
5q-Del	Del_11p15.5	1	1
5q-Del	Del_11q25	1	1
5q-Del	Del_12q23.1	1	1
5q-Del	Del_12q24.31	1	1
5q-Del	Del_13q14.2	1	1
5q-Del	Del_14q24.1	1	1
5q-Del	Del_15q13.1	1	1
5q-Del	Del_17p12	1	1
5q-Del	Del_17q21.31	1	1
5q-Del	Del_19p13.3	1	1
5q-Del	Del_19q13.32	1	1
5q-Del	Del_20p13	1	1
6q-Del	9p-Del	1	1
6q-Del	Del_3p21.31	1	1
6q-Del	Del_6p25.3	1	1
6q-Del	Del_6q15	1	1
6q-Del	Del_6q27	1	1
6q-Del	Del_8p23.2	1	1
6q-Del	Del_9p23	1	1
6q-Del	Del_9p21.3	1	1
6q-Del	Del_11q13.1	1	1
6q-Del	Del_11q23.3	1	1
6q-Del	Del_11q25	1	1
6q-Del	Del_13q14.2	1	1
6q-Del	Del_14q24.1	1	1
6q-Del	Del_16q24.3	1	1
6q-Del	Del_17p12	1	1
6q-Del	Del_19p13.3	1	1
6q-Del	Del_21q11.2	1	1
6q-Del	Del_22q13.32	1	1
8p-Del	9p-Del	1	1
8p-Del	Amp_8p11.23	1	1
8p-Del	Amp_8p11.21	1	1
8p-Del	Amp_8q24.21	1	1
8p-Del	Amp_11q13.3	1	1
8p-Del	Amp_17q23.1	1	1
8p-Del	Amp_19p13.12	1	1
8p-Del	Amp_20q13.2	1	1
8p-Del	Del_1p36.13	1	1
8p-Del	Del_3p21.31	1	1
8p-Del	Del_4p16.3	1	1
8p-Del	Del_4q35.1	1	1
8p-Del	Del_6q15	1	1
8p-Del	Del_8p23.2	1	1
8p-Del	Del_9p21.3	1	1
8p-Del	Del_9q34.2	1	1
8p-Del	Del_11p15.5	1	1
8p-Del	Del_11q13.1	1	1
8p-Del	Del_11q23.3	1	1
8p-Del	Del_11q25	1	1
8p-Del	Del_12q23.1	1	1
8p-Del	Del_13q14.2	1	1
8p-Del	Del_14q24.1	1	1
8p-Del	Del_17p12	1	1
8p-Del	Del_18q23	1	1
8p-Del	Del_19p13.3	1	1
8p-Del	Del_19q13.32	1	1
8p-Del	Del_20p13	1	1
8p-Del	Del_22q13.32	1	1
9p-Del	9q-Del	1	1
9p-Del	Amp_11q13.3	1	1
9p-Del	Amp_11q14.1	1	1
9p-Del	Amp_17q23.1	1	1
9p-Del	Amp_20q13.2	1	1
9p-Del	Del_1p36.13	1	1
9p-Del	Del_1p22.1	1	1
9p-Del	Del_2q37.3	1	1
9p-Del	Del_3p21.31	1	1
9p-Del	Del_4p16.3	1	1
9p-Del	Del_5q21.3	1	1
9p-Del	Del_6p25.3	1	1
9p-Del	Del_6q15	1	1
9p-Del	Del_6q27	1	1
9p-Del	Del_8p23.2	1	1
9p-Del	Del_9p23	1	1
9p-Del	Del_9p21.3	1	1
9p-Del	Del_9q21.11	1	1
9p-Del	Del_9q34.2	1	1
9p-Del	Del_10q23.31	1	1
9p-Del	Del_10q26.3	1	1
9p-Del	Del_11p15.5	1	1
9p-Del	Del_11q23.3	1	1
9p-Del	Del_11q25	1	1
9p-Del	Del_13q14.2	1	1
9p-Del	Del_14q24.1	1	1
9p-Del	Del_15q13.1	1	1
9p-Del	Del_16q24.3	1	1
9p-Del	Del_17p12	1	1
9p-Del	Del_17q21.31	1	1
9p-Del	Del_18q23	1	1
9p-Del	Del_19p13.3	1	1
9p-Del	Del_19q13.32	1	1
9p-Del	Del_22q13.32	1	1
9q-Del	Amp_11q13.3	1	1
9q-Del	Amp_11q14.1	1	1
9q-Del	Del_1p36.13	1	1
9q-Del	Del_2q37.3	1	1
9q-Del	Del_3p21.31	1	1
9q-Del	Del_4p16.3	1	1
9q-Del	Del_5q11.2	1	1
9q-Del	Del_5q21.3	1	1
9q-Del	Del_6p25.3	1	1
9q-Del	Del_6q15	1	1
9q-Del	Del_6q27	1	1
9q-Del	Del_9p23	1	1
9q-Del	Del_9p21.3	1	1
9q-Del	Del_9q21.11	1	1
9q-Del	Del_9q34.2	1	1
9q-Del	Del_10q23.31	1	1
9q-Del	Del_10q26.3	1	1
9q-Del	Del_11q13.1	1	1
9q-Del	Del_11q23.3	1	1
9q-Del	Del_11q25	1	1
9q-Del	Del_13q14.2	1	1
9q-Del	Del_14q24.1	1	1
9q-Del	Del_15q13.1	1	1
9q-Del	Del_17p12	1	1
9q-Del	Del_17q21.31	1	1
9q-Del	Del_19p13.3	1	1
9q-Del	Del_20p13	1	1
9q-Del	Del_22q13.32	1	1
Amp_1p22.3	Amp_1q21.3	1	1
Amp_1p22.3	Amp_1q44	1	1
Amp_1p22.3	Amp_8p11.21	1	1
Amp_1p22.3	Amp_8q24.21	1	1
Amp_1p22.3	Amp_10p15.1	1	1
Amp_1p22.3	Amp_19q12	1	1
Amp_1p22.3	Del_5q11.2	1	1
Amp_1p22.3	Del_5q21.3	1	1
Amp_1q21.3	Amp_1q44	1	1
Amp_1q21.3	Amp_10p15.1	1	1
Amp_1q21.3	Amp_19q12	1	1
Amp_3p25.1	Amp_3q26.32	1	1
Amp_3p25.1	Amp_6q21	1	1
Amp_3p25.1	Amp_8q24.21	1	1
Amp_3p25.1	Amp_12p13.33	1	1
Amp_3p25.1	Amp_12q15	1	1
Amp_3p25.1	Amp_17q23.1	1	1
Amp_3p25.1	Del_2q37.3	1	1
Amp_3p25.1	Del_3p21.31	1	1
Amp_3p25.1	Del_4p16.3	1	1
Amp_3p25.1	Del_4q35.1	1	1
Amp_3p25.1	Del_7p22.3	1	1
Amp_3p25.1	Del_11p15.5	1	1
Amp_3p25.1	Del_12q23.1	1	1
Amp_3p25.1	Del_12q24.31	1	1
Amp_3p25.1	Del_17q21.31	1	1
Amp_3q26.32	Amp_6p23	1	1
Amp_3q26.32	Amp_6q21	1	1
Amp_3q26.32	Amp_8q24.21	1	1
Amp_3q26.32	Amp_10p15.1	1	1
Amp_3q26.32	Amp_12p13.33	1	1
Amp_3q26.32	Amp_13q34	1	1
Amp_3q26.32	Amp_19p13.12	1	1
Amp_3q26.32	Amp_19q12	1	1
Amp_3q26.32	Del_3p21.31	1	1
Amp_3q26.32	Del_4p16.3	1	1
Amp_3q26.32	Del_4q35.1	1	1
Amp_3q26.32	Del_5q11.2	1	1
Amp_3q26.32	Del_5q21.3	1	1
Amp_3q26.32	Del_8p23.2	1	1
Amp_3q26.32	Del_10q26.3	1	1
Amp_3q26.32	Del_13q14.2	1	1
Amp_3q26.32	Del_15q13.1	1	1
Amp_3q26.32	Del_18q23	1	1
Amp_4q13.3	Amp_12q15	1	1
Amp_6p23	Amp_6q21	1	1
Amp_6p23	Amp_8q24.21	1	1
Amp_6p23	Amp_10p15.1	1	1
Amp_6p23	Amp_12p13.33	1	1
Amp_6p23	Amp_13q34	1	1
Amp_6p23	Amp_15q26.3	1	1
Amp_6p23	Amp_17q23.1	1	1
Amp_6p23	Del_4q35.1	1	1
Amp_6p23	Del_5q11.2	1	1
Amp_6p23	Del_5q21.3	1	1
Amp_6p23	Del_6p25.3	1	1
Amp_6p23	Del_6q27	1	1
Amp_6p23	Del_13q14.2	1	1
Amp_6p23	Del_15q13.1	1	1
Amp_6q21	Amp_10q22.3	1	1
Amp_6q21	Amp_12p13.33	1	1
Amp_6q21	Amp_13q34	1	1
Amp_6q21	Amp_15q26.3	1	1
Amp_6q21	Del_3p21.31	1	1
Amp_6q21	Del_4p16.3	1	1
Amp_6q21	Del_4q35.1	1	1
Amp_6q21	Del_5q11.2	1	1
Amp_6q21	Del_5q21.3	1	1
Amp_6q21	Del_15q13.1	1	1
Amp_8p11.23	Amp_8p11.21	1	1
Amp_8p11.23	Amp_8q24.21	1	1
Amp_8p11.23	Amp_11q13.3	1	1
Amp_8p11.23	Amp_20q13.2	1	1
Amp_8p11.23	Del_6q15	1	1
Amp_8p11.23	Del_8p23.2	1	1
Amp_8p11.23	Del_11q13.1	1	1
Amp_8p11.23	Del_11q23.3	1	1
Amp_8p11.23	Del_11q25	1	1
Amp_8p11.21	Amp_8q24.21	1	1
Amp_8p11.21	Amp_11q13.3	1	1
Amp_8p11.21	Amp_19q12	1	1
Amp_8p11.21	Del_8p23.2	1	1
Amp_8p11.21	Del_11q13.1	1	1
Amp_8p11.21	Del_11q23.3	1	1
Amp_8p11.21	Del_13q14.2	1	1
Amp_8q24.21	Amp_10p15.1	1	1
Amp_8q24.21	Amp_10q22.3	1	1
Amp_8q24.21	Amp_11p13	1	1
Amp_8q24.21	Amp_11q13.3	1	1
Amp_8q24.21	Amp_12p13.33	1	1
Amp_8q24.21	Amp_12q15	1	1
Amp_8q24.21	Amp_13q34	1	1
Amp_8q24.21	Amp_14q21.1	1	1
Amp_8q24.21	Amp_17q12	1	1
Amp_8q24.21	Amp_17q23.1	1	1
Amp_8q24.21	Amp_19p13.12	1	1
Amp_8q24.21	Amp_19q12	1	1
Amp_8q24.21	Amp_20q13.2	1	1
Amp_8q24.21	Del_1p36.13	1	1
Amp_8q24.21	Del_2q37.3	1	1
Amp_8q24.21	Del_3p21.31	1	1
Amp_8q24.21	Del_4q35.1	1	1
Amp_8q24.21	Del_5q11.2	1	1
Amp_8q24.21	Del_5q21.3	1	1
Amp_8q24.21	Del_6p25.3	1	1
Amp_8q24.21	Del_8p23.2	1	1
Amp_8q24.21	Del_9q34.2	1	1
Amp_8q24.21	Del_10q26.3	1	1
Amp_8q24.21	Del_11p15.5	1	1
Amp_8q24.21	Del_12q24.31	1	1
Amp_8q24.21	Del_13q14.2	1	1
Amp_8q24.21	Del_19p13.3	1	1
Amp_8q24.21	Del_20p13	1	1
Amp_8q24.21	Del_21q11.2	1	1
Amp_10p15.1	Amp_12p13.33	1	1
Amp_10p15.1	Amp_13q34	1	1
Amp_10p15.1	Amp_19q12	1	1
Amp_10p15.1	Del_2q37.3	1	1
Amp_10p15.1	Del_4p16.3	1	1
Amp_10p15.1	Del_4q35.1	1	1
Amp_10p15.1	Del_5q11.2	1	1
Amp_10p15.1	Del_5q21.3	1	1
Amp_10p15.1	Del_9q34.2	1	1
Amp_10p15.1	Del_10q23.31	1	1
Amp_10p15.1	Del_10q26.3	1	1
Amp_10p15.1	Del_11p15.5	1	1
Amp_10p15.1	Del_15q13.1	1	1
Amp_10p15.1	Del_20p13	1	1
Amp_10q22.3	Amp_19q13.42	1	1
Amp_10q22.3	Del_10q23.31	1	1
Amp_10q22.3	Del_19q13.32	1	1
Amp_11p13	Amp_11q13.3	1	1
Amp_11p13	Amp_11q14.1	1	1
Amp_11p13	Amp_19q12	1	1
Amp_11p13	Amp_19q13.42	1	1
Amp_11p13	Del_11p15.5	1	1
Amp_11q13.3	Amp_11q14.1	1	1
Amp_11q13.3	Amp_12q15	1	1
Amp_11q13.3	Amp_17q12	1	1
Amp_11q13.3	Amp_17q23.1	1	1
Amp_11q13.3	Amp_19q13.42	1	1
Amp_11q13.3	Amp_20q13.2	1	1
Amp_11q13.3	Del_8p23.2	1	1
Amp_11q13.3	Del_9p23	1	1
Amp_11q13.3	Del_9p21.3	1	1
Amp_11q13.3	Del_11q13.1	1	1
Amp_11q13.3	Del_11q23.3	1	1
Amp_11q13.3	Del_11q25	1	1
Amp_11q13.3	Del_21q11.2	1	1
Amp_11q14.1	Del_1p36.13	1	1
Amp_11q14.1	Del_3p21.31	1	1
Amp_11q14.1	Del_8p23.2	1	1
Amp_11q14.1	Del_11q13.1	1	1
Amp_11q14.1	Del_11q23.3	1	1
Amp_11q14.1	Del_11q25	1	1
Amp_12p13.33	Amp_12q15	1	1
Amp_12p13.33	Amp_13q34	1	1
Amp_12p13.33	Amp_19p13.12	1	1
Amp_12p13.33	Amp_19q12	1	1
Amp_12p13.33	Amp_19q13.42	1	1
Amp_12p13.33	Del_2q37.3	1	1
Amp_12p13.33	Del_4q35.1	1	1
Amp_12p13.33	Del_5q11.2	1	1
Amp_12p13.33	Del_5q21.3	1	1
Amp_12p13.33	Del_10q26.3	1	1
Amp_12p13.33	Del_11p15.5	1	1
Amp_12p13.33	Del_14q24.1	1	1
Amp_12p13.33	Del_15q13.1	1	1
Amp_12p13.33	Del_19p13.3	1	1
Amp_12p13.33	Del_20p13	1	1
Amp_12q15	Amp_20q13.2	1	1
Amp_12q15	Del_12q23.1	1	1
Amp_12q15	Del_12q24.31	1	1
Amp_13q34	Amp_19q12	1	1
Amp_13q34	Del_2q37.3	1	1
Amp_13q34	Del_4p16.3	1	1
Amp_13q34	Del_4q35.1	1	1
Amp_13q34	Del_5q11.2	1	1
Amp_13q34	Del_5q21.3	1	1
Amp_13q34	Del_14q24.1	1	1
Amp_13q34	Del_15q13.1	1	1
Amp_14q21.1	Amp_17q23.1	1	1
Amp_14q21.1	Amp_20q13.2	1	1
Amp_14q21.1	Del_22q13.32	1	1
Amp_15q26.3	Del_2q37.3	1	1
Amp_15q26.3	Del_4q35.1	1	1
Amp_15q26.3	Del_9p23	1	1
Amp_15q26.3	Del_9p21.3	1	1
Amp_15q26.3	Del_9q34.2	1	1
Amp_15q26.3	Del_10q23.31	1	1
Amp_15q26.3	Del_10q26.3	1	1
Amp_15q26.3	Del_11p15.5	1	1
Amp_15q26.3	Del_15q13.1	1	1
Amp_15q26.3	Del_17p12	1	1
Amp_15q26.3	Del_19p13.3	1	1
Amp_15q26.3	Del_19q13.32	1	1
Amp_17q12	Amp_17q23.1	1	1
Amp_17q12	Amp_20q13.2	1	1
Amp_17q12	Del_1p36.13	1	1
Amp_17q12	Del_8p23.2	1	1
Amp_17q12	Del_11q25	1	1
Amp_17q12	Del_17p12	1	1
Amp_17q12	Del_17q21.31	1	1
Amp_17q23.1	Amp_20q13.2	1	1
Amp_17q23.1	Del_1p36.13	1	1
Amp_17q23.1	Del_3p21.31	1	1
Amp_17q23.1	Del_8p23.2	1	1
Amp_17q23.1	Del_9p23	1	1
Amp_17q23.1	Del_9p21.3	1	1
Amp_17q23.1	Del_11q23.3	1	1
Amp_17q23.1	Del_11q25	1	1
Amp_17q23.1	Del_12p13.1	1	1
Amp_17q23.1	Del_13q14.2	1	1
Amp_17q23.1	Del_17p12	1	1
Amp_17q23.1	Del_17q21.31	1	1
Amp_19p13.12	Amp_19q12	1	1
Amp_19p13.12	Amp_19q13.42	1	1
Amp_19p13.12	Del_4q35.1	1	1
Amp_19p13.12	Del_8p23.2	1	1
Amp_19p13.12	Del_11p15.5	1	1
Amp_19p13.12	Del_15q13.1	1	1
Amp_19p13.12	Del_17q21.31	1	1
Amp_19p13.12	Del_19p13.3	1	1
Amp_19q12	Amp_19q13.42	1	1
Amp_19q12	Del_5q11.2	1	1
Amp_19q12	Del_5q21.3	1	1
Amp_19q12	Del_19p13.3	1	1
Amp_19q12	Del_19q13.32	1	1
Amp_19q13.42	Amp_20q13.2	1	1
Amp_19q13.42	Del_19p13.3	1	1
Amp_20q13.2	Del_2q37.3	1	1
Amp_20q13.2	Del_6q15	1	1
Amp_20q13.2	Del_8p23.2	1	1
Amp_20q13.2	Del_9p23	1	1
Amp_20q13.2	Del_9p21.3	1	1
Amp_20q13.2	Del_10q26.3	1	1
Amp_20q13.2	Del_13q14.2	1	1
Amp_20q13.2	Del_18q23	1	1
Amp_20q13.2	Del_19p13.3	1	1
Amp_20q13.2	Del_19q13.32	1	1
Amp_20q13.2	Del_21q11.2	1	1
Del_1p36.13	Del_1p22.1	1	1
Del_1p36.13	Del_2q37.3	1	1
Del_1p36.13	Del_3p21.31	1	1
Del_1p36.13	Del_4p16.3	1	1
Del_1p36.13	Del_4q35.1	1	1
Del_1p36.13	Del_5q11.2	1	1
Del_1p36.13	Del_5q21.3	1	1
Del_1p36.13	Del_6q15	1	1
Del_1p36.13	Del_6q27	1	1
Del_1p36.13	Del_7q36.1	1	1
Del_1p36.13	Del_8p23.2	1	1
Del_1p36.13	Del_9p23	1	1
Del_1p36.13	Del_9p21.3	1	1
Del_1p36.13	Del_9q21.11	1	1
Del_1p36.13	Del_9q34.2	1	1
Del_1p36.13	Del_10q23.31	1	1
Del_1p36.13	Del_10q26.3	1	1
Del_1p36.13	Del_11p15.5	1	1
Del_1p36.13	Del_11q13.1	1	1
Del_1p36.13	Del_11q23.3	1	1
Del_1p36.13	Del_11q25	1	1
Del_1p36.13	Del_12p13.1	1	1
Del_1p36.13	Del_13q14.2	1	1
Del_1p36.13	Del_14q24.1	1	1
Del_1p36.13	Del_15q13.1	1	1
Del_1p36.13	Del_16q24.3	1	1
Del_1p36.13	Del_17p12	1	1
Del_1p36.13	Del_17q21.31	1	1
Del_1p36.13	Del_18q23	1	1
Del_1p36.13	Del_19p13.3	1	1
Del_1p36.13	Del_19q13.32	1	1
Del_1p36.13	Del_20p13	1	1
Del_1p36.13	Del_21q11.2	1	1
Del_1p36.13	Del_22q13.32	1	1
Del_1p22.1	Del_3p21.31	1	1
Del_1p22.1	Del_4p16.3	1	1
Del_1p22.1	Del_7p22.3	1	1
Del_1p22.1	Del_7q36.1	1	1
Del_1p22.1	Del_9p23	1	1
Del_1p22.1	Del_9p21.3	1	1
Del_1p22.1	Del_10q23.31	1	1
Del_1p22.1	Del_10q26.3	1	1
Del_1p22.1	Del_11p15.5	1	1
Del_1p22.1	Del_11q13.1	1	1
Del_1p22.1	Del_11q23.3	1	1
Del_1p22.1	Del_11q25	1	1
Del_1p22.1	Del_12q23.1	1	1
Del_1p22.1	Del_13q14.2	1	1
Del_1p22.1	Del_14q24.1	1	1
Del_1p22.1	Del_16q24.3	1	1
Del_1p22.1	Del_17p12	1	1
Del_1p22.1	Del_18q23	1	1
Del_1p22.1	Del_19p13.3	1	1
Del_1p22.1	Del_22q13.32	1	1
Del_2q37.3	Del_3p21.31	1	1
Del_2q37.3	Del_4p16.3	1	1
Del_2q37.3	Del_4q35.1	1	1
Del_2q37.3	Del_5q11.2	1	1
Del_2q37.3	Del_5q21.3	1	1
Del_2q37.3	Del_6q27	1	1
Del_2q37.3	Del_9p23	1	1
Del_2q37.3	Del_9p21.3	1	1
Del_2q37.3	Del_9q21.11	1	1
Del_2q37.3	Del_9q34.2	1	1
Del_2q37.3	Del_10q26.3	1	1
Del_2q37.3	Del_11p15.5	1	1
Del_2q37.3	Del_11q23.3	1	1
Del_2q37.3	Del_13q14.2	1	1
Del_2q37.3	Del_14q24.1	1	1
Del_2q37.3	Del_15q13.1	1	1
Del_2q37.3	Del_17p12	1	1
Del_2q37.3	Del_17q21.31	1	1
Del_2q37.3	Del_18q23	1	1
Del_2q37.3	Del_19p13.3	1	1
Del_2q37.3	Del_19q13.32	1	1
Del_2q37.3	Del_20p13	1	1
Del_2q37.3	Del_21q11.2	1	1
Del_2q37.3	Del_22q13.32	1	1
Del_3p21.31	Del_4p16.3	1	1
Del_3p21.31	Del_4q35.1	1	1
Del_3p21.31	Del_5q11.2	1	1
Del_3p21.31	Del_5q21.3	1	1
Del_3p21.31	Del_6p25.3	1	1
Del_3p21.31	Del_6q27	1	1
Del_3p21.31	Del_7p22.3	1	1
Del_3p21.31	Del_7q36.1	1	1
Del_3p21.31	Del_8p23.2	1	1
Del_3p21.31	Del_9p23	1	1
Del_3p21.31	Del_9p21.3	1	1
Del_3p21.31	Del_9q21.11	1	1
Del_3p21.31	Del_9q34.2	1	1
Del_3p21.31	Del_10q23.31	1	1
Del_3p21.31	Del_10q26.3	1	1
Del_3p21.31	Del_11p15.5	1	1
Del_3p21.31	Del_11q23.3	1	1
Del_3p21.31	Del_11q25	1	1
Del_3p21.31	Del_12p13.1	1	1
Del_3p21.31	Del_12q23.1	1	1
Del_3p21.31	Del_12q24.31	1	1
Del_3p21.31	Del_13q14.2	1	1
Del_3p21.31	Del_14q24.1	1	1
Del_3p21.31	Del_15q13.1	1	1
Del_3p21.31	Del_16q24.3	1	1
Del_3p21.31	Del_17p12	1	1
Del_3p21.31	Del_17q21.31	1	1
Del_3p21.31	Del_18q23	1	1
Del_3p21.31	Del_19p13.3	1	1
Del_3p21.31	Del_19q13.32	1	1
Del_3p21.31	Del_20p13	1	1
Del_3p21.31	Del_21q11.2	1	1
Del_3p21.31	Del_22q13.32	1	1
Del_4p16.3	Del_4q35.1	1	1
Del_4p16.3	Del_5q11.2	1	1
Del_4p16.3	Del_5q21.3	1	1
Del_4p16.3	Del_8p23.2	1	1
Del_4p16.3	Del_9p23	1	1
Del_4p16.3	Del_9p21.3	1	1
Del_4p16.3	Del_10q23.31	1	1
Del_4p16.3	Del_10q26.3	1	1
Del_4p16.3	Del_11p15.5	1	1
Del_4p16.3	Del_11q23.3	1	1
Del_4p16.3	Del_11q25	1	1
Del_4p16.3	Del_12q23.1	1	1
Del_4p16.3	Del_12q24.31	1	1
Del_4p16.3	Del_13q14.2	1	1
Del_4p16.3	Del_14q24.1	1	1
Del_4p16.3	Del_15q13.1	1	1
Del_4p16.3	Del_17p12	1	1
Del_4p16.3	Del_17q21.31	1	1
Del_4p16.3	Del_18q23	1	1
Del_4p16.3	Del_19p13.3	1	1
Del_4p16.3	Del_19q13.32	1	1
Del_4p16.3	Del_20p13	1	1
Del_4p16.3	Del_21q11.2	1	1
Del_4p16.3	Del_22q13.32	1	1
Del_4q35.1	Del_5q11.2	1	1
Del_4q35.1	Del_5q21.3	1	1
Del_4q35.1	Del_6p25.3	1	1
Del_4q35.1	Del_7p22.3	1	1
Del_4q35.1	Del_7q36.1	1	1
Del_4q35.1	Del_8p23.2	1	1
Del_4q35.1	Del_9p21.3	1	1
Del_4q35.1	Del_9q34.2	1	1
Del_4q35.1	Del_10q23.31	1	1
Del_4q35.1	Del_10q26.3	1	1
Del_4q35.1	Del_11p15.5	1	1
Del_4q35.1	Del_11q23.3	1	1
Del_4q35.1	Del_11q25	1	1
Del_4q35.1	Del_12q23.1	1	1
Del_4q35.1	Del_12q24.31	1	1
Del_4q35.1	Del_13q14.2	1	1
Del_4q35.1	Del_14q24.1	1	1
Del_4q35.1	Del_15q13.1	1	1
Del_4q35.1	Del_17p12	1	1
Del_4q35.1	Del_17q21.31	1	1
Del_4q35.1	Del_18q23	1	1
Del_4q35.1	Del_19p13.3	1	1
Del_4q35.1	Del_19q13.32	1	1
Del_4q35.1	Del_20p13	1	1
Del_4q35.1	Del_22q13.32	1	1
Del_5q11.2	Del_5q21.3	1	1
Del_5q11.2	Del_6p25.3	1	1
Del_5q11.2	Del_7p22.3	1	1
Del_5q11.2	Del_8p23.2	1	1
Del_5q11.2	Del_9p21.3	1	1
Del_5q11.2	Del_9q21.11	1	1
Del_5q11.2	Del_9q34.2	1	1
Del_5q11.2	Del_10q23.31	1	1
Del_5q11.2	Del_10q26.3	1	1
Del_5q11.2	Del_11p15.5	1	1
Del_5q11.2	Del_12q23.1	1	1
Del_5q11.2	Del_12q24.31	1	1
Del_5q11.2	Del_13q14.2	1	1
Del_5q11.2	Del_14q24.1	1	1
Del_5q11.2	Del_15q13.1	1	1
Del_5q11.2	Del_17p12	1	1
Del_5q11.2	Del_17q21.31	1	1
Del_5q11.2	Del_18q23	1	1
Del_5q11.2	Del_19p13.3	1	1
Del_5q11.2	Del_19q13.32	1	1
Del_5q11.2	Del_20p13	1	1
Del_5q21.3	Del_8p23.2	1	1
Del_5q21.3	Del_9p21.3	1	1
Del_5q21.3	Del_9q34.2	1	1
Del_5q21.3	Del_10q23.31	1	1
Del_5q21.3	Del_10q26.3	1	1
Del_5q21.3	Del_11p15.5	1	1
Del_5q21.3	Del_12p13.1	1	1
Del_5q21.3	Del_12q23.1	1	1
Del_5q21.3	Del_12q24.31	1	1
Del_5q21.3	Del_13q14.2	1	1
Del_5q21.3	Del_14q24.1	1	1
Del_5q21.3	Del_15q13.1	1	1
Del_5q21.3	Del_17p12	1	1
Del_5q21.3	Del_17q21.31	1	1
Del_5q21.3	Del_19p13.3	1	1
Del_5q21.3	Del_19q13.32	1	1
Del_5q21.3	Del_20p13	1	1
Del_6p25.3	Del_6q15	1	1
Del_6p25.3	Del_6q27	1	1
Del_6p25.3	Del_9p23	1	1
Del_6p25.3	Del_9p21.3	1	1
Del_6p25.3	Del_9q34.2	1	1
Del_6p25.3	Del_11p15.5	1	1
Del_6p25.3	Del_11q13.1	1	1
Del_6p25.3	Del_11q23.3	1	1
Del_6p25.3	Del_12q24.31	1	1
Del_6p25.3	Del_13q14.2	1	1
Del_6p25.3	Del_14q24.1	1	1
Del_6p25.3	Del_16q24.3	1	1
Del_6p25.3	Del_17p12	1	1
Del_6p25.3	Del_20p13	1	1
Del_6p25.3	Del_22q13.32	1	1
Del_6q15	Del_6q27	1	1
Del_6q15	Del_8p23.2	1	1
Del_6q15	Del_9p23	1	1
Del_6q15	Del_9p21.3	1	1
Del_6q15	Del_9q21.11	1	1
Del_6q15	Del_11p15.5	1	1
Del_6q15	Del_11q13.1	1	1
Del_6q15	Del_11q23.3	1	1
Del_6q15	Del_11q25	1	1
Del_6q15	Del_13q14.2	1	1
Del_6q15	Del_14q24.1	1	1
Del_6q15	Del_16q24.3	1	1
Del_6q15	Del_17p12	1	1
Del_6q15	Del_18q23	1	1
Del_6q15	Del_19p13.3	1	1
Del_6q15	Del_20p13	1	1
Del_6q15	Del_22q13.32	1	1
Del_6q27	Del_7p22.3	1	1
Del_6q27	Del_8p23.2	1	1
Del_6q27	Del_9p23	1	1
Del_6q27	Del_9p21.3	1	1
Del_6q27	Del_9q21.11	1	1
Del_6q27	Del_11q13.1	1	1
Del_6q27	Del_11q23.3	1	1
Del_6q27	Del_11q25	1	1
Del_6q27	Del_13q14.2	1	1
Del_6q27	Del_14q24.1	1	1
Del_6q27	Del_15q13.1	1	1
Del_6q27	Del_16q24.3	1	1
Del_6q27	Del_17p12	1	1
Del_6q27	Del_19p13.3	1	1
Del_6q27	Del_20p13	1	1
Del_6q27	Del_22q13.32	1	1
Del_7p22.3	Del_7q36.1	1	1
Del_7p22.3	Del_8p23.2	1	1
Del_7p22.3	Del_10q26.3	1	1
Del_7p22.3	Del_11p15.5	1	1
Del_7p22.3	Del_11q23.3	1	1
Del_7p22.3	Del_11q25	1	1
Del_7p22.3	Del_13q14.2	1	1
Del_7p22.3	Del_14q24.1	1	1
Del_7p22.3	Del_15q13.1	1	1
Del_7p22.3	Del_17p12	1	1
Del_7p22.3	Del_17q21.31	1	1
Del_7q36.1	Del_12q24.31	1	1
Del_7q36.1	Del_20p13	1	1
Del_8p23.2	Del_9p23	1	1
Del_8p23.2	Del_9p21.3	1	1
Del_8p23.2	Del_9q21.11	1	1
Del_8p23.2	Del_9q34.2	1	1
Del_8p23.2	Del_10q23.31	1	1
Del_8p23.2	Del_10q26.3	1	1
Del_8p23.2	Del_11p15.5	1	1
Del_8p23.2	Del_11q13.1	1	1
Del_8p23.2	Del_11q23.3	1	1
Del_8p23.2	Del_11q25	1	1
Del_8p23.2	Del_12p13.1	1	1
Del_8p23.2	Del_12q23.1	1	1
Del_8p23.2	Del_12q24.31	1	1
Del_8p23.2	Del_13q14.2	1	1
Del_8p23.2	Del_14q24.1	1	1
Del_8p23.2	Del_15q13.1	1	1
Del_8p23.2	Del_16q24.3	1	1
Del_8p23.2	Del_17p12	1	1
Del_8p23.2	Del_18q23	1	1
Del_8p23.2	Del_19p13.3	1	1
Del_8p23.2	Del_19q13.32	1	1
Del_8p23.2	Del_20p13	1	1
Del_8p23.2	Del_21q11.2	1	1
Del_8p23.2	Del_22q13.32	1	1
Del_9p23	Del_9p21.3	1	1
Del_9p23	Del_9q21.11	1	1
Del_9p23	Del_9q34.2	1	1
Del_9p23	Del_10q23.31	1	1
Del_9p23	Del_10q26.3	1	1
Del_9p23	Del_11p15.5	1	1
Del_9p23	Del_11q23.3	1	1
Del_9p23	Del_11q25	1	1
Del_9p23	Del_13q14.2	1	1
Del_9p23	Del_14q24.1	1	1
Del_9p23	Del_15q13.1	1	1
Del_9p23	Del_17p12	1	1
Del_9p23	Del_17q21.31	1	1
Del_9p23	Del_18q23	1	1
Del_9p23	Del_19p13.3	1	1
Del_9p23	Del_19q13.32	1	1
Del_9p23	Del_20p13	1	1
Del_9p23	Del_22q13.32	1	1
Del_9p21.3	Del_9q21.11	1	1
Del_9p21.3	Del_9q34.2	1	1
Del_9p21.3	Del_10q23.31	1	1
Del_9p21.3	Del_10q26.3	1	1
Del_9p21.3	Del_11p15.5	1	1
Del_9p21.3	Del_11q23.3	1	1
Del_9p21.3	Del_11q25	1	1
Del_9p21.3	Del_13q14.2	1	1
Del_9p21.3	Del_14q24.1	1	1
Del_9p21.3	Del_15q13.1	1	1
Del_9p21.3	Del_17p12	1	1
Del_9p21.3	Del_17q21.31	1	1
Del_9p21.3	Del_18q23	1	1
Del_9p21.3	Del_19p13.3	1	1
Del_9p21.3	Del_19q13.32	1	1
Del_9p21.3	Del_20p13	1	1
Del_9p21.3	Del_22q13.32	1	1
Del_9q21.11	Del_9q34.2	1	1
Del_9q21.11	Del_10q23.31	1	1
Del_9q21.11	Del_10q26.3	1	1
Del_9q21.11	Del_11q13.1	1	1
Del_9q21.11	Del_11q23.3	1	1
Del_9q21.11	Del_11q25	1	1
Del_9q21.11	Del_13q14.2	1	1
Del_9q21.11	Del_14q24.1	1	1
Del_9q21.11	Del_15q13.1	1	1
Del_9q21.11	Del_17p12	1	1
Del_9q21.11	Del_17q21.31	1	1
Del_9q21.11	Del_18q23	1	1
Del_9q21.11	Del_19p13.3	1	1
Del_9q21.11	Del_20p13	1	1
Del_9q21.11	Del_22q13.32	1	1
Del_9q34.2	Del_10q23.31	1	1
Del_9q34.2	Del_10q26.3	1	1
Del_9q34.2	Del_11p15.5	1	1
Del_9q34.2	Del_11q13.1	1	1
Del_9q34.2	Del_11q23.3	1	1
Del_9q34.2	Del_11q25	1	1
Del_9q34.2	Del_12p13.1	1	1
Del_9q34.2	Del_12q24.31	1	1
Del_9q34.2	Del_13q14.2	1	1
Del_9q34.2	Del_14q24.1	1	1
Del_9q34.2	Del_15q13.1	1	1
Del_9q34.2	Del_17p12	1	1
Del_9q34.2	Del_17q21.31	1	1
Del_9q34.2	Del_19p13.3	1	1
Del_9q34.2	Del_20p13	1	1
Del_9q34.2	Del_22q13.32	1	1
Del_10q23.31	Del_10q26.3	1	1
Del_10q23.31	Del_11p15.5	1	1
Del_10q23.31	Del_11q23.3	1	1
Del_10q23.31	Del_11q25	1	1
Del_10q23.31	Del_12q24.31	1	1
Del_10q23.31	Del_13q14.2	1	1
Del_10q23.31	Del_14q24.1	1	1
Del_10q23.31	Del_15q13.1	1	1
Del_10q23.31	Del_17p12	1	1
Del_10q23.31	Del_18q23	1	1
Del_10q23.31	Del_19p13.3	1	1
Del_10q23.31	Del_19q13.32	1	1
Del_10q23.31	Del_20p13	1	1
Del_10q26.3	Del_11p15.5	1	1
Del_10q26.3	Del_11q13.1	1	1
Del_10q26.3	Del_11q23.3	1	1
Del_10q26.3	Del_11q25	1	1
Del_10q26.3	Del_12p13.1	1	1
Del_10q26.3	Del_12q24.31	1	1
Del_10q26.3	Del_13q14.2	1	1
Del_10q26.3	Del_14q24.1	1	1
Del_10q26.3	Del_15q13.1	1	1
Del_10q26.3	Del_17p12	1	1
Del_10q26.3	Del_17q21.31	1	1
Del_10q26.3	Del_18q23	1	1
Del_10q26.3	Del_19p13.3	1	1
Del_10q26.3	Del_19q13.32	1	1
Del_10q26.3	Del_20p13	1	1
Del_11p15.5	Del_11q13.1	1	1
Del_11p15.5	Del_11q23.3	1	1
Del_11p15.5	Del_11q25	1	1
Del_11p15.5	Del_12q23.1	1	1
Del_11p15.5	Del_12q24.31	1	1
Del_11p15.5	Del_13q14.2	1	1
Del_11p15.5	Del_14q24.1	1	1
Del_11p15.5	Del_15q13.1	1	1
Del_11p15.5	Del_17p12	1	1
Del_11p15.5	Del_17q21.31	1	1
Del_11p15.5	Del_18q23	1	1
Del_11p15.5	Del_19p13.3	1	1
Del_11p15.5	Del_19q13.32	1	1
Del_11p15.5	Del_20p13	1	1
Del_11p15.5	Del_21q11.2	1	1
Del_11p15.5	Del_22q13.32	1	1
Del_11q13.1	Del_11q23.3	1	1
Del_11q13.1	Del_11q25	1	1
Del_11q13.1	Del_13q14.2	1	1
Del_11q13.1	Del_16q24.3	1	1
Del_11q13.1	Del_17p12	1	1
Del_11q13.1	Del_19p13.3	1	1
Del_11q23.3	Del_11q25	1	1
Del_11q23.3	Del_13q14.2	1	1
Del_11q23.3	Del_14q24.1	1	1
Del_11q23.3	Del_15q13.1	1	1
Del_11q23.3	Del_16q24.3	1	1
Del_11q23.3	Del_17p12	1	1
Del_11q23.3	Del_17q21.31	1	1
Del_11q23.3	Del_18q23	1	1
Del_11q23.3	Del_19p13.3	1	1
Del_11q23.3	Del_19q13.32	1	1
Del_11q23.3	Del_20p13	1	1
Del_11q23.3	Del_22q13.32	1	1
Del_11q25	Del_12q23.1	1	1
Del_11q25	Del_13q14.2	1	1
Del_11q25	Del_14q24.1	1	1
Del_11q25	Del_15q13.1	1	1
Del_11q25	Del_16q24.3	1	1
Del_11q25	Del_17p12	1	1
Del_11q25	Del_17q21.31	1	1
Del_11q25	Del_18q23	1	1
Del_11q25	Del_19p13.3	1	1
Del_11q25	Del_19q13.32	1	1
Del_11q25	Del_20p13	1	1
Del_11q25	Del_22q13.32	1	1
Del_12p13.1	Del_13q14.2	1	1
Del_12p13.1	Del_14q24.1	1	1
Del_12p13.1	Del_17p12	1	1
Del_12p13.1	Del_17q21.31	1	1
Del_12p13.1	Del_19p13.3	1	1
Del_12p13.1	Del_19q13.32	1	1
Del_12p13.1	Del_22q13.32	1	1
Del_12q23.1	Del_12q24.31	1	1
Del_12q23.1	Del_14q24.1	1	1
Del_12q23.1	Del_15q13.1	1	1
Del_12q23.1	Del_17p12	1	1
Del_12q23.1	Del_17q21.31	1	1
Del_12q23.1	Del_18q23	1	1
Del_12q23.1	Del_19q13.32	1	1
Del_12q23.1	Del_20p13	1	1
Del_12q24.31	Del_14q24.1	1	1
Del_12q24.31	Del_15q13.1	1	1
Del_12q24.31	Del_17p12	1	1
Del_12q24.31	Del_17q21.31	1	1
Del_12q24.31	Del_18q23	1	1
Del_12q24.31	Del_20p13	1	1
Del_13q14.2	Del_14q24.1	1	1
Del_13q14.2	Del_15q13.1	1	1
Del_13q14.2	Del_16q24.3	1	1
Del_13q14.2	Del_17p12	1	1
Del_13q14.2	Del_17q21.31	1	1
Del_13q14.2	Del_18q23	1	1
Del_13q14.2	Del_19p13.3	1	1
Del_13q14.2	Del_19q13.32	1	1
Del_13q14.2	Del_20p13	1	1
Del_13q14.2	Del_21q11.2	1	1
Del_13q14.2	Del_22q13.32	1	1
Del_14q24.1	Del_15q13.1	1	1
Del_14q24.1	Del_16q24.3	1	1
Del_14q24.1	Del_17p12	1	1
Del_14q24.1	Del_17q21.31	1	1
Del_14q24.1	Del_18q23	1	1
Del_14q24.1	Del_19p13.3	1	1
Del_14q24.1	Del_19q13.32	1	1
Del_14q24.1	Del_20p13	1	1
Del_14q24.1	Del_22q13.32	1	1
Del_15q13.1	Del_17p12	1	1
Del_15q13.1	Del_17q21.31	1	1
Del_15q13.1	Del_18q23	1	1
Del_15q13.1	Del_19p13.3	1	1
Del_15q13.1	Del_20p13	1	1
Del_15q13.1	Del_21q11.2	1	1
Del_15q13.1	Del_22q13.32	1	1
Del_16q24.3	Del_17p12	1	1
Del_16q24.3	Del_22q13.32	1	1
Del_17p12	Del_17q21.31	1	1
Del_17p12	Del_18q23	1	1
Del_17p12	Del_19p13.3	1	1
Del_17p12	Del_19q13.32	1	1
Del_17p12	Del_20p13	1	1
Del_17p12	Del_21q11.2	1	1
Del_17p12	Del_22q13.32	1	1
Del_17q21.31	Del_18q23	1	1
Del_17q21.31	Del_19p13.3	1	1
Del_17q21.31	Del_19q13.32	1	1
Del_17q21.31	Del_20p13	1	1
Del_17q21.31	Del_21q11.2	1	1
Del_17q21.31	Del_22q13.32	1	1
Del_18q23	Del_19p13.3	1	1
Del_18q23	Del_20p13	1	1
Del_18q23	Del_22q13.32	1	1
Del_19p13.3	Del_19q13.32	1	1
Del_19p13.3	Del_20p13	1	1
Del_19p13.3	Del_21q11.2	1	1
Del_19p13.3	Del_22q13.32	1	1
Del_19q13.32	Del_20p13	1	1
Del_20p13	Del_22q13.32	1	1
PIK3CA	Amp_8q24.21	1.21e-06	1
TP53	1q-Amp	1.22e-05	1
GATA3	TP53	1.23e-08	1
MAP3K1	TP53	1.98e-05	1
8p-Amp	8p-Del	2.17e-10	1
TP53	11q-Del	2.32e-05	1
TP53	Del_16q24.3	2.48e-17	1
CDH1	Del_5q21.3	2.61e-05	1
PIK3CA	Amp_17q23.1	2.71e-05	1
CDH1	Del_9p21.3	2.7e-05	1
PIK3CA	TP53	2e-05	1
CDH1	20q-Amp	3.15e-05	1
PIK3CA	Del_10q23.31	3.57e-07	1
PIK3CA	Amp_10p15.1	4.2e-08	1
CDH1	TP53	4.44e-10	1
TP53	16q-Del	4.85e-13	1
TP53	Del_11q23.3	5.03e-06	1
CDH1	Amp_20q13.2	5.16e-08	1
CDH1	Amp_3q26.32	6.47e-05	1
PIK3CA	Amp_15q26.3	8.38e-05	1
PIK3CA	Del_14q24.1	8.58e-08	1
CDH1	Amp_8q24.21	8.92e-09	1
PIK3CA	Del_20p13	9.73e-05	1
