gene1	gene2	pval	qval
6q-Del	Del_6q13	0.000116	1
Del_6q13	Del_14q32.12	0.000116	1
Del_6q13	Del_14q32.11	0.000116	1
9q-Del	Del_9p21.3	0.000182	1
Del_6q25.3	Del_14q32.12	0.000184	1
Del_6q25.3	Del_14q32.11	0.000184	1
4q-Del	Del_4q34.3	0.000344	1
Del_6q13	Del_14q32.33	0.000505	1
13q-Del	3p-Del	0.00051	1
6q-Del	Del_3p13	0.000518	1
Del_3p13	Del_14q32.12	0.000518	1
Del_3p13	Del_14q32.11	0.000518	1
Del_6q25.3	Del_9q21.11	0.000518	1
Del_1p36.21	Del_6q13	0.000689	1
3p-Del	6q-Del	0.000709	1
Del_3p13	Del_6q25.3	0.000709	1
Del_9p21.3	Del_9q21.11	0.000709	1
Del_3p13	Del_13q21.32	0.000845	1
14q-Del	Del_14q32.12	0.000957	1
14q-Del	Del_14q32.11	0.000957	1
Amp_1p22.3	Amp_1q22	0.000957	1
3p-Del	Del_13q21.32	0.00106	1
Del_6q25.3	Del_14q32.33	0.00106	1
Del_1p36.21	Del_14q32.33	0.00131	1
9p-Del	Del_6q25.3	0.00133	1
9q-Del	Del_6q25.3	0.00133	1
9q-Del	Del_6q13	0.00136	1
14q-Del	Del_14q32.33	0.0017	1
6q-Del	Del_1p36.21	0.00238	1
Amp_1q22	Del_1p36.21	0.00238	1
Del_1p36.21	Del_14q32.12	0.00238	1
Del_1p36.21	Del_14q32.11	0.00238	1
6q-Del	Del_13q21.32	0.00243	1
Del_13q21.32	Del_14q32.12	0.00243	1
Del_13q21.32	Del_14q32.11	0.00243	1
Del_6q25.3	Del_9p21.3	0.00269	1
Del_3p13	Del_14q32.33	0.0028	1
14q-Del	Del_6q13	0.00289	1
9p-Del	Del_3p13	0.00293	1
3p-Del	Del_1p36.21	0.00416	1
4q-Del	Del_3p25.3	0.00416	1
4q-Del	Del_3p13	0.00416	1
Del_1p36.21	Del_9q21.11	0.00416	1
3p-Del	Del_6q13	0.00478	1
Del_6q13	Del_9q21.11	0.00478	1
Del_13q21.32	Del_14q32.33	0.00506	1
9p-Del	Del_13q21.32	0.00516	1
9q-Del	Del_13q21.32	0.00516	1
Del_14q22.1	Del_14q32.12	0.00574	1
Del_14q22.1	Del_14q32.11	0.00574	1
HLA-B	IDH1	0.00583	1
3p-Del	Del_6q25.3	0.00622	1
Del_3p25.3	Del_14q32.12	0.00622	1
Del_3p25.3	Del_14q32.11	0.00622	1
1q-Amp	Amp_1p22.3	0.00642	1
3p-Del	Del_14q32.12	0.00698	1
3p-Del	Del_14q32.11	0.00698	1
Del_9q21.11	Del_14q32.12	0.00698	1
Del_9q21.11	Del_14q32.11	0.00698	1
9p-Del	Del_1p36.21	0.00704	1
9q-Del	Del_1p36.21	0.00704	1
Del_6q25.3	Del_13q21.32	0.00704	1
PBRM1	Del_3p13	0.00865	1
Del_6q13	Del_13q21.32	0.00978	1
Del_14q22.1	Del_14q32.33	0.00978	1
21q-Del	3p-Del	0.00989	1
Del_3p25.3	Del_4q34.3	0.0105	1
Del_3p13	Del_4q34.3	0.0105	1
Del_3p13	Del_6q13	0.0105	1
Del_9q21.11	Del_13q21.32	0.0106	1
Del_1p36.21	Del_4q34.3	0.0112	1
14q-Del	Del_6q25.3	0.0115	1
9p-Del	Del_6q13	0.0121	1
Del_3p25.3	Del_13q21.32	0.0127	1
Del_3p13	Del_9q21.11	0.0128	1
Del_6q13	Del_9p21.3	0.0133	1
3p-Del	Del_14q32.33	0.0153	1
Del_9q21.11	Del_14q32.33	0.0153	1
MLL3	Del_9p21.3	0.0158	1
13q-Del	6q-Del	0.0158	1
Del_6q13	Del_14q22.1	0.0159	1
6q-Del	Del_9p21.3	0.0165	1
6q-Del	Del_14q32.12	0.0165	1
6q-Del	Del_14q32.11	0.0165	1
Del_9p21.3	Del_14q32.12	0.0165	1
Del_9p21.3	Del_14q32.11	0.0165	1
13q-Del	Del_3p25.3	0.0173	1
13q-Del	Del_3p13	0.0173	1
14q-Del	Del_3p25.3	0.0173	1
14q-Del	Del_3p13	0.0173	1
21q-Del	Del_3p25.3	0.0173	1
21q-Del	Del_3p13	0.0173	1
MLL3	21q-Del	0.0183	1
Del_1p36.21	Del_13q21.32	0.0185	1
6q-Del	9p-Del	0.0189	1
9p-Del	Del_14q32.12	0.0189	1
9p-Del	Del_14q32.11	0.0189	1
9q-Del	Del_14q32.12	0.0189	1
9q-Del	Del_14q32.11	0.0189	1
HLA-B	Del_4q34.3	0.0191	1
Del_9p21.3	Del_13q21.32	0.02	1
Del_3p25.3	Del_14q32.33	0.021	1
9p-Del	Del_3p25.3	0.0247	1
9q-Del	Del_3p25.3	0.0247	1
9q-Del	Del_3p13	0.0247	1
PBRM1	Del_9q21.11	0.03	1
3p-Del	Del_4q34.3	0.0304	1
Del_3p13	Del_10q26.12	0.0334	1
6q-Del	Del_14q32.33	0.0345	1
Del_9p21.3	Del_14q32.33	0.0345	1
RUFY1	14q-Del	0.0353	1
9p-Del	Del_14q32.33	0.0358	1
9q-Del	Del_14q32.33	0.0358	1
MLL3	Del_4q34.3	0.036	1
13q-Del	Del_6q13	0.036	1
21q-Del	Del_6q13	0.036	1
Amp_1q22	Del_3p25.3	0.0392	1
Amp_1q22	Del_3p13	0.0392	1
Del_3p25.3	Del_9p21.3	0.0392	1
Del_3p13	Del_9p21.3	0.0392	1
6q-Del	Del_9q21.11	0.0404	1
1q-Amp	9p-Del	0.0435	1
1q-Amp	Del_1p36.21	0.0443	1
4q-Del	Del_1p36.21	0.0443	1
PBRM1	RUFY1	0.0471	1
RUFY1	Del_14q22.1	0.0471	1
ARID1A	Del_6q25.3	0.0478	1
14q-Del	9p-Del	0.0501	1
14q-Del	9q-Del	0.0501	1
9p-Del	Amp_11q13.3	0.0524	1
9q-Del	Amp_11q13.3	0.0524	1
Del_6q25.3	Del_14q22.1	0.0548	1
Del_4q34.3	Del_13q21.32	0.0573	1
ARID1A	Del_3p25.3	0.0627	1
Amp_11q13.3	Del_3p25.3	0.0627	1
Del_10q26.12	Del_13q21.32	0.0632	1
Amp_1q22	Del_4q34.3	0.0646	1
PBRM1	Del_1p36.21	0.0664	1
1q-Amp	Del_9q21.11	0.0677	1
3p-Del	4q-Del	0.0677	1
Del_3p25.3	Del_9q21.11	0.0681	1
FTH1	6q-Del	0.0695	1
FTH1	Del_10q26.12	0.0695	1
Amp_11q13.3	Del_9q21.11	0.0709	1
MLL3	3p-Del	0.0724	1
14q-Del	3p-Del	0.0724	1
14q-Del	Del_9q21.11	0.0724	1
Amp_1p22.3	Del_9q21.11	0.0724	1
Del_4q34.3	Del_10q26.12	0.0762	1
PBRM1	Del_3p25.3	0.0778	1
Del_3p25.3	Del_14q22.1	0.0778	1
Del_3p13	Del_14q22.1	0.0778	1
MLL3	Del_10q26.12	0.0792	1
13q-Del	Del_10q26.12	0.0792	1
IDH1	Del_13q21.32	0.0819	1
6q-Del	9q-Del	0.0865	1
3p-Del	Del_9q21.11	0.0906	1
IDH1	Del_6q25.3	0.0925	1
ARID1A	6q-Del	0.0933	1
6q-Del	Amp_11q13.3	0.0933	1
Amp_11q13.3	Del_9p21.3	0.0933	1
MUC2	MUC21	0.0952	1
13q-Del	Del_1p36.21	0.0978	1
14q-Del	Del_1p36.21	0.0978	1
21q-Del	Del_1p36.21	0.0978	1
Amp_1p22.3	Del_1p36.21	0.0978	1
MLL3	Del_6q25.3	0.098	1
13q-Del	Del_6q25.3	0.098	1
21q-Del	Del_6q25.3	0.098	1
1q-Amp	Del_14q32.12	0.1	1
1q-Amp	Del_14q32.11	0.1	1
4q-Del	Amp_1q22	0.1	1
MLL3	Del_14q32.12	0.101	1
MLL3	Del_14q32.11	0.101	1
13q-Del	Del_14q32.12	0.101	1
13q-Del	Del_14q32.11	0.101	1
14q-Del	6q-Del	0.101	1
14q-Del	Amp_1q22	0.101	1
14q-Del	Del_9p21.3	0.101	1
21q-Del	6q-Del	0.101	1
21q-Del	Del_9p21.3	0.101	1
21q-Del	Del_14q32.12	0.101	1
21q-Del	Del_14q32.11	0.101	1
PBRM1	9p-Del	0.103	1
PBRM1	9q-Del	0.103	1
9p-Del	Del_14q22.1	0.103	1
9q-Del	Del_14q22.1	0.103	1
Del_4q34.3	Del_6q25.3	0.111	1
KRAS	TBX20	0.113	1
PBRM1	Del_10q26.12	0.117	1
MLL3	Del_13q21.32	0.12	1
21q-Del	Del_13q21.32	0.12	1
9p-Del	Del_10q26.12	0.12	1
13q-Del	21q-Del	0.125	1
14q-Del	21q-Del	0.125	1
21q-Del	Amp_1p22.3	0.125	1
MLL3	Del_3p13	0.13	1
RUFY1	9p-Del	0.131	1
RUFY1	9q-Del	0.131	1
IDH1	9q-Del	0.134	1
MLL3	Del_14q32.33	0.135	1
13q-Del	Del_14q32.33	0.135	1
21q-Del	Del_14q32.33	0.135	1
ARID1A	Amp_11q13.3	0.139	1
1q-Amp	Del_14q32.33	0.141	1
Del_1p36.21	Del_10q26.12	0.142	1
ARID1A	ZDHHC4	0.143	1
ZDHHC4	Amp_11q13.3	0.143	1
3p-Del	Del_14q22.1	0.143	1
Del_9q21.11	Del_14q22.1	0.143	1
Del_1p36.21	Del_9p21.3	0.144	1
1q-Amp	4q-Del	0.147	1
3p-Del	Amp_1q22	0.148	1
3p-Del	Del_9p21.3	0.148	1
Amp_1q22	Del_9q21.11	0.148	1
ARID1A	Del_6q13	0.151	1
Amp_11q13.3	Del_6q13	0.151	1
IDH2	3p-Del	0.153	1
RUFY1	Del_9q21.11	0.153	1
3p-Del	Del_10q26.12	0.157	1
1q-Amp	Del_10q26.12	0.162	1
DDHD1	3p-Del	0.165	1
Amp_11q13.3	Del_13q21.32	0.166	1
DDHD1	13q-Del	0.171	1
IDH1	13q-Del	0.171	1
FTH1	Del_6q25.3	0.174	1
IDH2	6q-Del	0.176	1
IDH2	Del_14q32.12	0.176	1
IDH2	Del_14q32.11	0.176	1
RUFY1	Amp_1q22	0.176	1
RUFY1	Del_9p21.3	0.176	1
RUFY1	Del_14q32.12	0.176	1
RUFY1	Del_14q32.11	0.176	1
MLL3	Del_6q13	0.177	1
1q-Amp	9q-Del	0.177	1
13q-Del	Del_4q34.3	0.177	1
21q-Del	Del_4q34.3	0.177	1
3p-Del	9p-Del	0.177	1
3p-Del	9q-Del	0.177	1
PBRM1	14q-Del	0.18	1
PBRM1	Amp_1p22.3	0.18	1
21q-Del	Del_14q22.1	0.18	1
PBRM1	6q-Del	0.192	1
PBRM1	Amp_1q22	0.192	1
1q-Amp	Del_4q34.3	0.192	1
6q-Del	Del_14q22.1	0.192	1
Amp_1q22	Del_14q22.1	0.192	1
Del_9p21.3	Del_14q22.1	0.192	1
1q-Amp	Del_3p13	0.194	1
DDHD1	6q-Del	0.2	1
IDH1	Del_14q32.12	0.2	1
IDH1	Del_14q32.11	0.2	1
6q-Del	Del_10q26.12	0.2	1
Amp_1q22	Del_10q26.12	0.2	1
Del_4q34.3	Del_6q13	0.2	1
IDH2	Del_14q32.33	0.202	1
RUFY1	Del_14q32.33	0.202	1
ARID1A	Del_1p36.21	0.203	1
FTH1	Del_3p25.3	0.203	1
FTH1	Del_3p13	0.203	1
Amp_11q13.3	Del_1p36.21	0.203	1
9p-Del	Del_4q34.3	0.204	1
9q-Del	Del_4q34.3	0.204	1
Del_4q34.3	Del_9p21.3	0.204	1
Del_4q34.3	Del_14q32.12	0.204	1
Del_4q34.3	Del_14q32.11	0.204	1
Del_3p25.3	Del_10q26.12	0.209	1
MLL3	9p-Del	0.214	1
MLL3	9q-Del	0.214	1
13q-Del	9p-Del	0.214	1
13q-Del	9q-Del	0.214	1
21q-Del	9p-Del	0.214	1
21q-Del	9q-Del	0.214	1
DDHD1	TBX20	0.218	1
IDH1	PDGFD	0.218	1
PBRM1	Del_6q25.3	0.228	1
IDH2	Del_6q13	0.229	1
PDGFD	Del_4q34.3	0.229	1
RUFY1	Del_4q34.3	0.229	1
RUFY1	Del_6q13	0.229	1
Amp_1q22	Del_14q32.12	0.23	1
Amp_1q22	Del_14q32.11	0.23	1
IDH1	Del_14q32.33	0.238	1
FTH1	MUC21	0.242	1
1q-Amp	14q-Del	0.242	1
13q-Del	4q-Del	0.242	1
21q-Del	4q-Del	0.242	1
PBRM1	Del_14q22.1	0.252	1
9p-Del	Amp_1q22	0.255	1
9q-Del	Amp_1q22	0.255	1
ARID1A	9q-Del	0.256	1
HLA-B	MLL3	0.256	1
HLA-B	9q-Del	0.256	1
MLL3	TP53	0.256	1
MUC2	TP53	0.256	1
TP53	13q-Del	0.256	1
14q-Del	Amp_11q13.3	0.256	1
Amp_1q22	Del_6q25.3	0.262	1
ARID1A	TBX20	0.269	1
HLA-B	PDGFD	0.269	1
KRAS	TP53	0.269	1
PDGFD	Amp_11q13.3	0.269	1
RUFY1	Amp_11q13.3	0.269	1
TBX20	TP53	0.269	1
MLL3	Del_9q21.11	0.27	1
13q-Del	Del_9q21.11	0.27	1
21q-Del	Del_9q21.11	0.27	1
HLA-B	Del_6q25.3	0.272	1
Amp_11q13.3	Del_6q25.3	0.272	1
IDH1	Del_4q34.3	0.279	1
IDH1	Del_6q13	0.279	1
IDH1	Del_1p36.21	0.286	1
ARID1A	Del_9q21.11	0.306	1
1q-Amp	Del_9p21.3	0.306	1
3p-Del	Amp_11q13.3	0.306	1
4q-Del	Del_9p21.3	0.306	1
4q-Del	Del_14q32.12	0.306	1
4q-Del	Del_14q32.11	0.306	1
PBRM1	Del_4q34.3	0.311	1
PBRM1	Del_6q13	0.311	1
Del_4q34.3	Del_14q32.33	0.311	1
DDHD1	FTH1	0.313	1
ZDHHC4	Del_13q21.32	0.314	1
RUFY1	Del_10q26.12	0.318	1
Del_1p36.21	Del_14q22.1	0.318	1
ARID1A	PBRM1	0.319	1
IDH2	Del_6q25.3	0.319	1
RUFY1	Del_6q25.3	0.319	1
Amp_11q13.3	Del_14q22.1	0.319	1
Amp_11q13.3	Del_3p13	0.321	1
PBRM1	4q-Del	0.33	1
1q-Amp	Del_14q22.1	0.33	1
Amp_1q22	Del_14q32.33	0.33	1
MLL3	6q-Del	0.332	1
MUC2	Del_9p21.3	0.332	1
13q-Del	Del_9p21.3	0.332	1
21q-Del	Amp_1q22	0.332	1
21q-Del	Del_10q26.12	0.344	1
IDH2	Del_3p25.3	0.353	1
IDH2	Del_3p13	0.353	1
PDGFD	Del_3p13	0.353	1
RUFY1	Del_3p25.3	0.353	1
RUFY1	Del_3p13	0.353	1
HLA-B	Del_14q32.12	0.36	1
HLA-B	Del_14q32.11	0.36	1
TP53	Del_14q32.12	0.36	1
TP53	Del_14q32.11	0.36	1
Amp_1q22	Amp_11q13.3	0.36	1
Amp_11q13.3	Del_14q32.12	0.36	1
Amp_11q13.3	Del_14q32.11	0.36	1
IDH2	MLL3	0.365	1
IDH2	14q-Del	0.365	1
IDH2	21q-Del	0.365	1
KRAS	MLL3	0.365	1
KRAS	MUC2	0.365	1
MLL3	PDGFD	0.365	1
MLL3	RUFY1	0.365	1
MLL3	TBX20	0.365	1
MUC2	RUFY1	0.365	1
MUC2	TBX20	0.365	1
RUFY1	21q-Del	0.365	1
TBX20	Amp_1p22.3	0.365	1
ZDHHC4	9p-Del	0.371	1
ZDHHC4	9q-Del	0.371	1
DDHD1	Del_13q21.32	0.372	1
ARID1A	FTH1	0.38	1
ARID1A	MUC21	0.38	1
14q-Del	Del_13q21.32	0.381	1
4q-Del	Del_14q32.33	0.381	1
HLA-B	4q-Del	0.383	1
9q-Del	Del_10q26.12	0.392	1
1q-Amp	Del_6q25.3	0.394	1
4q-Del	Del_6q25.3	0.394	1
FTH1	Del_1p36.21	0.397	1
PBRM1	3p-Del	0.398	1
CLIP4	DDHD1	0.399	1
DDHD1	IDH1	0.399	1
ZDHHC4	Del_9q21.11	0.4	1
MLL3	Del_1p36.21	0.406	1
MLL3	Del_3p25.3	0.406	1
Amp_1p22.3	Del_3p13	0.406	1
IDH2	Del_14q22.1	0.41	1
PBRM1	TBX20	0.41	1
HLA-B	Del_14q32.33	0.415	1
TP53	Del_14q32.33	0.415	1
Amp_11q13.3	Del_14q32.33	0.415	1
DDHD1	Del_6q25.3	0.419	1
ZDHHC4	6q-Del	0.429	1
ZDHHC4	Del_9p21.3	0.429	1
ZDHHC4	Del_14q32.12	0.429	1
ZDHHC4	Del_14q32.11	0.429	1
MLL3	13q-Del	0.432	1
MLL3	14q-Del	0.432	1
6q-Del	Del_4q34.3	0.442	1
Amp_1q22	Del_6q13	0.442	1
4q-Del	9p-Del	0.443	1
IDH2	4q-Del	0.454	1
PDGFD	4q-Del	0.454	1
RUFY1	1q-Amp	0.454	1
RUFY1	4q-Del	0.454	1
Del_9q21.11	Del_10q26.12	0.456	1
ZDHHC4	Del_14q32.33	0.457	1
1q-Amp	Del_6q13	0.46	1
4q-Del	Del_6q13	0.46	1
14q-Del	Del_4q34.3	0.466	1
DDHD1	Del_3p25.3	0.47	1
DDHD1	Del_3p13	0.47	1
IDH1	Del_3p25.3	0.47	1
IDH1	Del_3p13	0.47	1
HLA-B	Del_6q13	0.472	1
TP53	Del_6q13	0.472	1
Amp_11q13.3	Del_4q34.3	0.472	1
PBRM1	Del_9p21.3	0.473	1
PBRM1	Del_14q32.12	0.473	1
PBRM1	Del_14q32.11	0.473	1
1q-Amp	Del_3p25.3	0.474	1
ARID1A	DDHD1	0.477	1
ARID1A	IDH1	0.477	1
CLIP4	HLA-B	0.477	1
CLIP4	TP53	0.477	1
DDHD1	HLA-B	0.477	1
DDHD1	TP53	0.477	1
IDH1	TP53	0.477	1
FTH1	Del_4q34.3	0.478	1
FTH1	Del_6q13	0.478	1
IDH1	9p-Del	0.478	1
Del_6q25.3	Del_10q26.12	0.481	1
ZDHHC4	Del_6q13	0.486	1
PBRM1	Del_13q21.32	0.492	1
Del_13q21.32	Del_14q22.1	0.492	1
4q-Del	Del_10q26.12	0.493	1
FTH1	MLL3	0.499	1
FTH1	13q-Del	0.499	1
FTH1	14q-Del	0.499	1
FTH1	21q-Del	0.499	1
MUC21	14q-Del	0.499	1
HLA-B	Del_13q21.32	0.509	1
TP53	Del_13q21.32	0.509	1
MLL3	PBRM1	0.516	1
MLL3	Del_14q22.1	0.516	1
PBRM1	13q-Del	0.516	1
PBRM1	21q-Del	0.516	1
Del_9p21.3	Del_10q26.12	0.519	1
Del_10q26.12	Del_14q32.12	0.519	1
Del_10q26.12	Del_14q32.11	0.519	1
9p-Del	Amp_1p22.3	0.525	1
9q-Del	Amp_1p22.3	0.525	1
1q-Amp	3p-Del	0.526	1
CLIP4	Del_9q21.11	0.53	1
IDH1	3p-Del	0.53	1
IDH1	Del_9q21.11	0.53	1
PDGFD	Del_13q21.32	0.536	1
RUFY1	Del_13q21.32	0.536	1
DDHD1	Del_10q26.12	0.546	1
IDH2	Del_1p36.21	0.546	1
PDGFD	Del_1p36.21	0.546	1
RUFY1	Del_1p36.21	0.546	1
PBRM1	Del_14q32.33	0.548	1
FTH1	PBRM1	0.553	1
FTH1	Del_14q22.1	0.553	1
MUC21	PBRM1	0.553	1
MUC21	Del_14q22.1	0.553	1
ARID1A	HLA-B	0.561	1
HLA-B	TP53	0.561	1
ZDHHC4	Del_6q25.3	0.571	1
CLIP4	Del_14q32.12	0.581	1
CLIP4	Del_14q32.11	0.581	1
IDH1	6q-Del	0.581	1
IDH1	Amp_1q22	0.581	1
IDH1	Del_9p21.3	0.581	1
Del_4q34.3	Del_9q21.11	0.582	1
Del_10q26.12	Del_14q32.33	0.582	1
MLL3	4q-Del	0.594	1
MUC2	4q-Del	0.594	1
1q-Amp	13q-Del	0.594	1
1q-Amp	21q-Del	0.594	1
14q-Del	4q-Del	0.594	1
3p-Del	Amp_1p22.3	0.594	1
4q-Del	Amp_1p22.3	0.594	1
1q-Amp	Del_13q21.32	0.597	1
4q-Del	Del_13q21.32	0.597	1
ZDHHC4	Del_3p25.3	0.6	1
ZDHHC4	Del_3p13	0.6	1
FTH1	1q-Amp	0.603	1
FTH1	4q-Del	0.603	1
4q-Del	6q-Del	0.606	1
CLIP4	13q-Del	0.609	1
CLIP4	14q-Del	0.609	1
CLIP4	21q-Del	0.609	1
CLIP4	Amp_1p22.3	0.609	1
DDHD1	MLL3	0.609	1
DDHD1	MUC2	0.609	1
DDHD1	21q-Del	0.609	1
DDHD1	Amp_1p22.3	0.609	1
IDH1	MLL3	0.609	1
IDH1	MUC2	0.609	1
IDH1	21q-Del	0.609	1
IDH1	Amp_1p22.3	0.609	1
PDGFD	9p-Del	0.612	1
PDGFD	9q-Del	0.612	1
HLA-B	Del_1p36.21	0.617	1
Del_4q34.3	Del_14q22.1	0.62	1
ARID1A	9p-Del	0.626	1
HLA-B	9p-Del	0.626	1
CLIP4	Del_14q32.33	0.63	1
TP53	Del_10q26.12	0.634	1
Amp_11q13.3	Del_10q26.12	0.634	1
TP53	Del_6q25.3	0.64	1
Del_6q13	Del_10q26.12	0.642	1
PDGFD	3p-Del	0.647	1
PDGFD	Del_9q21.11	0.647	1
RUFY1	3p-Del	0.647	1
TBX20	3p-Del	0.647	1
TBX20	Del_9q21.11	0.647	1
Amp_1p22.3	Del_14q32.12	0.66	1
Amp_1p22.3	Del_14q32.11	0.66	1
CLIP4	Del_14q22.1	0.665	1
DDHD1	PBRM1	0.665	1
Amp_1p22.3	Del_6q25.3	0.668	1
CLIP4	Del_6q13	0.677	1
DDHD1	Del_4q34.3	0.677	1
DDHD1	Del_6q13	0.677	1
HLA-B	3p-Del	0.679	1
HLA-B	Del_9q21.11	0.679	1
TP53	3p-Del	0.679	1
TP53	Del_9q21.11	0.679	1
IDH2	Amp_1q22	0.681	1
IDH2	Del_9p21.3	0.681	1
KRAS	Del_9p21.3	0.681	1
PDGFD	Amp_1q22	0.681	1
PDGFD	Del_9p21.3	0.681	1
PDGFD	Del_14q32.12	0.681	1
PDGFD	Del_14q32.11	0.681	1
RUFY1	6q-Del	0.681	1
TBX20	6q-Del	0.681	1
TBX20	Amp_1q22	0.681	1
TBX20	Del_9p21.3	0.681	1
PBRM1	1q-Amp	0.682	1
4q-Del	Del_14q22.1	0.682	1
FTH1	Del_13q21.32	0.691	1
ARID1A	Del_3p13	0.694	1
HLA-B	Del_3p25.3	0.694	1
HLA-B	Del_3p13	0.694	1
ARID1A	MUC2	0.697	1
ARID1A	14q-Del	0.697	1
ARID1A	Amp_1p22.3	0.697	1
HLA-B	MUC2	0.697	1
HLA-B	13q-Del	0.697	1
HLA-B	14q-Del	0.697	1
HLA-B	21q-Del	0.697	1
HLA-B	Amp_1p22.3	0.697	1
MLL3	Amp_11q13.3	0.697	1
MUC2	Amp_11q13.3	0.697	1
TP53	Amp_1p22.3	0.697	1
21q-Del	Amp_11q13.3	0.697	1
KRAS	Del_14q32.33	0.713	1
PDGFD	Del_14q32.33	0.713	1
CLIP4	1q-Amp	0.714	1
DDHD1	4q-Del	0.714	1
IDH1	1q-Amp	0.714	1
IDH1	4q-Del	0.714	1
Amp_1p22.3	Del_14q32.33	0.72	1
ARID1A	Amp_1q22	0.728	1
ARID1A	Del_9p21.3	0.728	1
ARID1A	Del_14q32.12	0.728	1
ARID1A	Del_14q32.11	0.728	1
HLA-B	Amp_1q22	0.728	1
HLA-B	Del_9p21.3	0.728	1
TP53	6q-Del	0.728	1
TP53	Del_9p21.3	0.728	1
Amp_1p22.3	Del_3p25.3	0.73	1
DDHD1	Del_1p36.21	0.732	1
6q-Del	Amp_1q22	0.738	1
Amp_1q22	Del_9p21.3	0.738	1
IDH2	Del_4q34.3	0.743	1
ZDHHC4	Del_1p36.21	0.743	1
4q-Del	9q-Del	0.746	1
ARID1A	Del_14q22.1	0.751	1
HLA-B	Del_14q22.1	0.751	1
PBRM1	TP53	0.751	1
PBRM1	Amp_11q13.3	0.751	1
FTH1	9p-Del	0.765	1
14q-Del	Del_10q26.12	0.768	1
Amp_1p22.3	Del_10q26.12	0.768	1
ARID1A	Del_14q32.33	0.773	1
MUC2	Del_6q13	0.775	1
Amp_1p22.3	Del_4q34.3	0.775	1
Amp_1p22.3	Del_6q13	0.775	1
CLIP4	Del_13q21.32	0.797	1
FTH1	3p-Del	0.797	1
HLA-B	1q-Amp	0.797	1
TP53	1q-Amp	0.797	1
TP53	4q-Del	0.797	1
1q-Amp	Amp_11q13.3	0.797	1
4q-Del	Amp_11q13.3	0.797	1
CLIP4	Del_6q25.3	0.8	1
4q-Del	Del_9q21.11	0.806	1
TP53	Del_4q34.3	0.813	1
Amp_1q22	Del_13q21.32	0.813	1
Del_10q26.12	Del_14q22.1	0.818	1
MLL3	MUC2	0.824	1
MLL3	Amp_1p22.3	0.824	1
MUC2	13q-Del	0.824	1
MUC2	14q-Del	0.824	1
PDGFD	Del_6q25.3	0.824	1
TBX20	Del_6q25.3	0.824	1
13q-Del	14q-Del	0.824	1
13q-Del	Amp_1p22.3	0.824	1
14q-Del	Amp_1p22.3	0.824	1
FTH1	Amp_1q22	0.826	1
FTH1	Del_9p21.3	0.826	1
FTH1	Del_14q32.12	0.826	1
FTH1	Del_14q32.11	0.826	1
MUC21	6q-Del	0.826	1
MUC21	Del_9p21.3	0.826	1
MUC21	Del_14q32.12	0.826	1
MUC21	Del_14q32.11	0.826	1
MUC2	9p-Del	0.83	1
MUC2	9q-Del	0.83	1
PDGFD	Del_3p25.3	0.847	1
TBX20	Del_3p25.3	0.847	1
TBX20	Del_3p13	0.847	1
FTH1	Del_14q32.33	0.852	1
MUC21	Del_14q32.33	0.852	1
1q-Amp	6q-Del	0.856	1
CLIP4	9p-Del	0.86	1
CLIP4	9q-Del	0.86	1
MUC2	PBRM1	0.868	1
MUC2	Del_14q22.1	0.868	1
13q-Del	Del_14q22.1	0.868	1
Amp_1p22.3	Del_14q22.1	0.868	1
ARID1A	Del_13q21.32	0.869	1
MUC2	Del_9q21.11	0.87	1
MUC21	Del_6q13	0.875	1
CLIP4	3p-Del	0.886	1
DDHD1	Del_9q21.11	0.886	1
MUC2	Del_6q25.3	0.899	1
MLL3	1q-Amp	0.902	1
MLL3	Amp_1q22	0.902	1
MUC2	1q-Amp	0.902	1
MUC2	6q-Del	0.902	1
MUC2	Del_14q32.12	0.902	1
MUC2	Del_14q32.11	0.902	1
13q-Del	Amp_1q22	0.902	1
6q-Del	Amp_1p22.3	0.902	1
Amp_1p22.3	Del_9p21.3	0.902	1
TP53	Del_1p36.21	0.905	1
CLIP4	6q-Del	0.907	1
CLIP4	Amp_1q22	0.907	1
CLIP4	Del_9p21.3	0.907	1
DDHD1	Amp_1q22	0.907	1
DDHD1	Del_14q32.12	0.907	1
DDHD1	Del_14q32.11	0.907	1
TP53	9p-Del	0.919	1
TP53	9q-Del	0.919	1
DDHD1	Del_14q32.33	0.926	1
MUC2	Del_3p25.3	0.928	1
MUC2	Del_14q32.33	0.928	1
TP53	Del_3p25.3	0.929	1
TP53	Del_3p13	0.929	1
MUC21	Del_6q25.3	0.93	1
ARID1A	3p-Del	0.937	1
KRAS	Del_1p36.21	0.939	1
TBX20	Del_1p36.21	0.939	1
CLIP4	Del_4q34.3	0.942	1
MUC21	Del_3p25.3	0.944	1
MUC21	Del_3p13	0.944	1
MUC2	Del_4q34.3	0.948	1
MUC2	Del_13q21.32	0.949	1
Amp_1p22.3	Del_13q21.32	0.949	1
HLA-B	6q-Del	0.952	1
TP53	Amp_1q22	0.952	1
CLIP4	Del_1p36.21	0.956	1
ARID1A	Del_4q34.3	0.974	1
CLIP4	Del_3p25.3	0.981	1
CLIP4	Del_3p13	0.981	1
MUC2	3p-Del	0.983	1
MUC21	Del_1p36.21	0.987	1
MUC2	Amp_1q22	0.988	1
MUC2	Del_3p13	0.99	1
MUC2	Del_1p36.21	0.994	1
ARID1A	CLIP4	1	1
ARID1A	IDH2	1	1
ARID1A	KRAS	1	1
ARID1A	MLL3	1	1
ARID1A	PDGFD	1	1
ARID1A	RUFY1	1	1
ARID1A	TP53	1	1
ARID1A	1q-Amp	1	1
ARID1A	13q-Del	1	1
ARID1A	21q-Del	1	1
ARID1A	4q-Del	1	1
ARID1A	Del_10q26.12	1	1
CLIP4	FTH1	1	1
CLIP4	IDH1	1	1
CLIP4	IDH2	1	1
CLIP4	KRAS	1	1
CLIP4	MLL3	1	1
CLIP4	MUC2	1	1
CLIP4	MUC21	1	1
CLIP4	PBRM1	1	1
CLIP4	PDGFD	1	1
CLIP4	RUFY1	1	1
CLIP4	TBX20	1	1
CLIP4	ZDHHC4	1	1
CLIP4	4q-Del	1	1
CLIP4	Amp_11q13.3	1	1
CLIP4	Del_10q26.12	1	1
DDHD1	IDH2	1	1
DDHD1	KRAS	1	1
DDHD1	MUC21	1	1
DDHD1	PDGFD	1	1
DDHD1	RUFY1	1	1
DDHD1	ZDHHC4	1	1
DDHD1	1q-Amp	1	1
DDHD1	14q-Del	1	1
DDHD1	9p-Del	1	1
DDHD1	9q-Del	1	1
DDHD1	Amp_11q13.3	1	1
DDHD1	Del_9p21.3	1	1
DDHD1	Del_14q22.1	1	1
FTH1	HLA-B	1	1
FTH1	IDH1	1	1
FTH1	IDH2	1	1
FTH1	KRAS	1	1
FTH1	MUC2	1	1
FTH1	PDGFD	1	1
FTH1	RUFY1	1	1
FTH1	TBX20	1	1
FTH1	TP53	1	1
FTH1	ZDHHC4	1	1
FTH1	9q-Del	1	1
FTH1	Amp_1p22.3	1	1
FTH1	Amp_11q13.3	1	1
FTH1	Del_9q21.11	1	1
HLA-B	IDH2	1	1
HLA-B	KRAS	1	1
HLA-B	MUC21	1	1
HLA-B	PBRM1	1	1
HLA-B	RUFY1	1	1
HLA-B	TBX20	1	1
HLA-B	ZDHHC4	1	1
HLA-B	Amp_11q13.3	1	1
HLA-B	Del_10q26.12	1	1
IDH1	IDH2	1	1
IDH1	KRAS	1	1
IDH1	MUC21	1	1
IDH1	PBRM1	1	1
IDH1	RUFY1	1	1
IDH1	TBX20	1	1
IDH1	ZDHHC4	1	1
IDH1	14q-Del	1	1
IDH1	Amp_11q13.3	1	1
IDH1	Del_10q26.12	1	1
IDH1	Del_14q22.1	1	1
IDH2	KRAS	1	1
IDH2	MUC2	1	1
IDH2	MUC21	1	1
IDH2	PBRM1	1	1
IDH2	PDGFD	1	1
IDH2	RUFY1	1	1
IDH2	TBX20	1	1
IDH2	TP53	1	1
IDH2	ZDHHC4	1	1
IDH2	1q-Amp	1	1
IDH2	13q-Del	1	1
IDH2	9p-Del	1	1
IDH2	9q-Del	1	1
IDH2	Amp_1p22.3	1	1
IDH2	Amp_11q13.3	1	1
IDH2	Del_9q21.11	1	1
IDH2	Del_10q26.12	1	1
IDH2	Del_13q21.32	1	1
KRAS	MUC21	1	1
KRAS	PBRM1	1	1
KRAS	PDGFD	1	1
KRAS	RUFY1	1	1
KRAS	ZDHHC4	1	1
KRAS	1q-Amp	1	1
KRAS	13q-Del	1	1
KRAS	14q-Del	1	1
KRAS	21q-Del	1	1
KRAS	3p-Del	1	1
KRAS	4q-Del	1	1
KRAS	6q-Del	1	1
KRAS	9p-Del	1	1
KRAS	9q-Del	1	1
KRAS	Amp_1p22.3	1	1
KRAS	Amp_1q22	1	1
KRAS	Amp_11q13.3	1	1
KRAS	Del_3p25.3	1	1
KRAS	Del_3p13	1	1
KRAS	Del_4q34.3	1	1
KRAS	Del_6q13	1	1
KRAS	Del_6q25.3	1	1
KRAS	Del_9q21.11	1	1
KRAS	Del_10q26.12	1	1
KRAS	Del_13q21.32	1	1
KRAS	Del_14q22.1	1	1
KRAS	Del_14q32.12	1	1
KRAS	Del_14q32.11	1	1
MLL3	MUC21	1	1
MLL3	ZDHHC4	1	1
MUC2	PDGFD	1	1
MUC2	ZDHHC4	1	1
MUC2	21q-Del	1	1
MUC2	Amp_1p22.3	1	1
MUC2	Del_10q26.12	1	1
MUC21	PDGFD	1	1
MUC21	RUFY1	1	1
MUC21	TBX20	1	1
MUC21	TP53	1	1
MUC21	ZDHHC4	1	1
MUC21	1q-Amp	1	1
MUC21	13q-Del	1	1
MUC21	21q-Del	1	1
MUC21	3p-Del	1	1
MUC21	4q-Del	1	1
MUC21	9p-Del	1	1
MUC21	9q-Del	1	1
MUC21	Amp_1p22.3	1	1
MUC21	Amp_1q22	1	1
MUC21	Amp_11q13.3	1	1
MUC21	Del_4q34.3	1	1
MUC21	Del_9q21.11	1	1
MUC21	Del_10q26.12	1	1
MUC21	Del_13q21.32	1	1
PBRM1	PDGFD	1	1
PBRM1	ZDHHC4	1	1
PDGFD	RUFY1	1	1
PDGFD	TBX20	1	1
PDGFD	TP53	1	1
PDGFD	ZDHHC4	1	1
PDGFD	1q-Amp	1	1
PDGFD	13q-Del	1	1
PDGFD	14q-Del	1	1
PDGFD	21q-Del	1	1
PDGFD	6q-Del	1	1
PDGFD	Amp_1p22.3	1	1
PDGFD	Del_6q13	1	1
PDGFD	Del_10q26.12	1	1
PDGFD	Del_14q22.1	1	1
RUFY1	TBX20	1	1
RUFY1	TP53	1	1
RUFY1	ZDHHC4	1	1
RUFY1	13q-Del	1	1
RUFY1	Amp_1p22.3	1	1
TBX20	ZDHHC4	1	1
TBX20	1q-Amp	1	1
TBX20	13q-Del	1	1
TBX20	14q-Del	1	1
TBX20	21q-Del	1	1
TBX20	4q-Del	1	1
TBX20	9p-Del	1	1
TBX20	9q-Del	1	1
TBX20	Amp_11q13.3	1	1
TBX20	Del_4q34.3	1	1
TBX20	Del_6q13	1	1
TBX20	Del_10q26.12	1	1
TBX20	Del_13q21.32	1	1
TBX20	Del_14q22.1	1	1
TBX20	Del_14q32.12	1	1
TBX20	Del_14q32.11	1	1
TBX20	Del_14q32.33	1	1
TP53	ZDHHC4	1	1
TP53	14q-Del	1	1
TP53	21q-Del	1	1
TP53	Amp_11q13.3	1	1
TP53	Del_14q22.1	1	1
ZDHHC4	1q-Amp	1	1
ZDHHC4	13q-Del	1	1
ZDHHC4	14q-Del	1	1
ZDHHC4	21q-Del	1	1
ZDHHC4	3p-Del	1	1
ZDHHC4	4q-Del	1	1
ZDHHC4	Amp_1p22.3	1	1
ZDHHC4	Amp_1q22	1	1
ZDHHC4	Del_4q34.3	1	1
ZDHHC4	Del_10q26.12	1	1
ZDHHC4	Del_14q22.1	1	1
13q-Del	Amp_11q13.3	1	1
Amp_1p22.3	Amp_11q13.3	1	1
14q-Del	Del_14q22.1	1.19e-06	1
9p-Del	Del_9q21.11	1.3e-06	1
9q-Del	Del_9q21.11	1.3e-06	1
6q-Del	Del_3p25.3	1.67e-05	1
9p-Del	9q-Del	1.94e-07	1
Del_6q13	Del_6q25.3	2.51e-07	1
Del_1p36.21	Del_3p25.3	2.84e-05	1
Del_1p36.21	Del_3p13	2.84e-05	1
Del_14q32.12	Del_14q32.11	3.08e-10	1
Del_3p25.3	Del_6q25.3	3.82e-05	1
6q-Del	Del_6q25.3	4.77e-06	1
13q-Del	Del_13q21.32	4.91e-05	1
Del_14q32.12	Del_14q32.33	4.93e-09	1
Del_14q32.11	Del_14q32.33	4.93e-09	1
3p-Del	Del_3p25.3	5.01e-05	1
3p-Del	Del_3p13	5.01e-05	1
9p-Del	Del_9p21.3	6.24e-06	1
Del_3p25.3	Del_6q13	6.41e-05	1
1q-Amp	Amp_1q22	7.09e-05	1
Del_1p36.21	Del_6q25.3	7.09e-05	1
Del_3p25.3	Del_3p13	8.36e-06	1
