# Mutations from non-coordinated clusters only with >3 mutations
"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-FA-8693-01A-11D-2397-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A4BB-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A4XK-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A6HN-01A-11D-A31X-10"	0	0	1	1	6	0	0	1	1	5	205	0	0	0	0	26	0	0	0	0	68	0	0	3	3	61	0	1	1	2	50	0	0	0	0	5	0	0	0.1	0	0	0	0	0	0	4	0	0	0.0655737704918033	0	0	0	0	4	9	102	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	6	5	0
"TCGA-FA-A6HO-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A7DS-01A-11D-A382-10"	0	0	1	1	9	1	0	0	0	8	328	0	0	0	0	65	0	0	0	0	65	0	0	3	3	94	0	0	5	5	104	0	0	1	1	10	0.111111111111111	0.2	0.0961538461538462	2.08	0.1	0	0	1	1	10	0.111111111111111	0.333333333333333	0.106382978723404	3.13333333333333	0.1	0.222222222222222	2	6	20	178	0.205376629831308	1	1	2.94398039845696	0.405125565513036	Inf	2.475	NA	1	1	1	0	2.475	0.205376629831308	1	1	2.94398039845696	0.333333333333333	1	1	7	6	0
"TCGA-FA-A7Q1-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A82F-01A-11D-A382-10"	0	0	1	1	5	0	0	0	0	5	205	0	0	0	0	37	0	0	0	0	37	1	1	1	3	76	1	0	1	2	55	0	0	0	0	4	0	0	0.0727272727272727	0	0	0	0	0	0	10	0	0	0.131578947368421	0	0	0	0	4	14	117	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	5	5	0
"TCGA-FA-A86F-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8041-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8042-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8043-01A-11D-2210-10"	0	0	1	1	4	1	0	1	1	2	82	0	0	0	0	33	0	1	0	1	11	0	0	0	0	25	0	0	1	1	13	0	0	0	0	0	0	0	0	NA	NA	0	0	0	0	7	0	NA	0.28	NA	0	0	0	1	7	31	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	4	2	0
"TCGA-FF-8046-01A-11D-2210-10"	0	0	1	1	7	0	0	0	0	7	287	0	2	0	2	73	0	0	0	0	43	2	0	1	3	62	1	0	1	2	109	0	0	0	0	8	0	0	0.073394495412844	0	0	0	0	0	0	6	0	0	0.0967741935483871	0	0	0	0	5	14	157	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	7	7	0
"TCGA-FF-8047-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8061-01A-11D-2210-10"	0	0	2	2	8	3	1	0	1	4	164	0	0	0	0	15	0	0	0	0	33	0	0	1	1	49	0	1	2	3	67	0	0	0	0	2	0	0	0.0298507462686567	0	0	0	0	0	0	0	0	0	0	NA	NA	0	0	3	2	114	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	8	4	0
"TCGA-FF-8062-01A-11D-2210-10"	0	0	1	1	6	2	0	0	0	4	164	0	0	0	0	44	0	0	0	0	37	0	0	2	2	52	2	0	0	2	31	0	0	0	0	8	0	0	0.258064516129032	0	0	0	0	0	0	5	0	0	0.0961538461538462	0	0	0	0	4	13	70	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	6	4	0
"TCGA-FF-A7CQ-01A-11D-A382-10"	0	0	1	1	8	1	0	0	0	7	287	0	0	0	0	51	0	0	0	0	50	0	0	4	4	81	0	0	3	3	105	0	0	0	0	8	0	0	0.0761904761904762	0	0	0	0	0	0	1	0	0	0.0123456790123457	0	0	0	0	7	9	177	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	8	7	0
"TCGA-FF-A7CR-01A-11D-A382-10"	0	0	2	2	15	3	0	0	0	12	492	1	0	0	1	84	1	0	0	1	101	0	1	1	2	146	1	1	6	8	161	0	0	1	1	12	0.0666666666666667	0.125	0.0745341614906832	1.67708333333333	0.0833333333333333	0	0	0	0	8	0	0	0.0547945205479452	0	0	0.0666666666666667	1	7	20	287	0.427875423269873	1	1	2.04373608986482	0.0880074847390039	Inf	1.91875	0	1	1	1	0	2.19285714285714	0.387009382074864	1	1	2.38216856905158	1	1	1	14	11	0
"TCGA-FF-A7CW-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-A7CX-01A-12D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FM-8000-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-G8-6324-01A-11D-2210-10"	0	0	38	38	408	56	2	2	4	348	14268	7	65	16	88	3193	7	58	15	80	3372	15	16	61	92	3781	20	13	55	88	3922	6	2	3	11	513	0.0269607843137255	0.125	0.130800611932687	0.955653021442495	0.0214424951267057	2	0	6	8	516	0.0196078431372549	0.0869565217391304	0.136471832848453	0.637175598247388	0.0155038759689922	0.0416666666666667	17	134	1029	6674	0.806958870448259	1	1	0.822858454309778	0.508971512728427	Inf	0.84278441745667	1.7110648340969	0.087298152805699	1	1	1.92165918024648	0.580803257263497	0.978036548560572	1	1	0.545578973061762	1	1	1	391	331	0
"TCGA-GR-7353-01A-11D-2210-10"	0	0	19	19	213	14	0	5	5	194	7954	4	35	11	50	1825	1	26	7	34	1893	9	10	44	63	2017	12	8	27	47	2219	5	0	3	8	295	0.0375586854460094	0.170212765957447	0.132942767012168	1.28034619545618	0.0271186440677966	3	0	4	7	306	0.0328638497652582	0.111111111111111	0.151710461080813	0.732389251997095	0.0228758169934641	0.0704225352112676	15	77	601	3635	0.325647749966026	1	1	1.17816109179622	0.692322376745551	Inf	1.1491716704044	2.68504872830996	0.00610097776365309	0.250140088309777	0.250140088309777	3.72038584984163	0.694898174404162	0.891731035694482	1	1	0.661583730982036	1	1	1	198	179	0
"TCGA-GR-A4D4-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GR-A4D5-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GR-A4D6-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GR-A4D9-01B-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TQ-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TT-01A-11D-A382-10"	0	0	3	3	18	4	1	0	1	13	533	0	0	0	0	87	0	1	0	1	102	2	2	4	8	187	1	0	3	4	157	1	0	0	1	11	0.0555555555555556	0.25	0.0700636942675159	3.56818181818182	0.0909090909090909	0	0	0	0	10	0	0	0.053475935828877	0	0	0.0555555555555556	1	9	21	323	0.478059648149912	1	1	1.70576164627254	0.0755852134801803	Inf	1.63809523809524	5.46031746031746	0.178880766676348	1	1	7.58750556682313	0	1	1	1	0	1	1	1	17	12	0
"TCGA-GS-A9TU-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TV-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TW-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TX-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TY-01A-11D-A38X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TZ-01A-11D-A38X-10"	0	0	2	2	11	2	0	1	1	8	328	1	0	0	1	69	0	1	0	1	70	0	1	1	2	95	2	0	2	4	94	0	0	0	0	13	0	0	0.138297872340426	0	0	0	0	0	0	5	0	0	0.0526315789473684	0	0	0	0	5	18	171	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	11	8	0
"TCGA-GS-A9U3-01A-11D-A38X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9U4-01A-11D-A38X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-RQ-A68N-01A-11D-A31X-10"	0	0	2	2	9	3	0	0	0	6	246	0	0	0	0	52	1	0	0	1	47	0	0	2	2	81	1	1	1	3	66	0	0	0	0	6	0	0	0.0909090909090909	0	0	0	0	0	0	8	0	0	0.0987654320987654	0	0	0	0	4	14	133	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	9	6	0
"TCGA-RQ-A6JB-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-RQ-AAAT-01A-11D-A38X-10"	0	0	1	1	5	0	0	0	0	5	205	0	0	0	0	45	0	0	0	0	26	3	0	0	3	60	0	1	1	2	74	0	0	0	0	5	0	0	0.0675675675675676	0	0	0	0	0	0	3	0	0	0.05	0	0	0	0	4	8	126	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	5	5	0
"TCGA-VB-A8QN-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"Totals"	0	0	76	76	732	90	4	10	14	628	25748	13	102	27	142	5699	10	87	22	119	5955	32	31	128	191	6867	41	26	109	176	7227	12	2	8	22	900	0.0300546448087432	0.125	0.12453300124533	1.00375	0.0244444444444444	5	0	11	16	899	0.0218579234972678	0.0837696335078534	0.130915974952672	0.639873273969332	0.017797552836485	0.0491803278688525	36	274	1799	12295	0.750679348176817	NA	NA	0.897926554415007	0.652758988197535	Inf	0.90979576467213	1.8244382343311	0.00966516577999009	NA	NA	2.07459724972764	0.62807044701346	0.99178427510151	NA	NA	0.595673355358876	0.818505041342437	NA	NA	696	592	NA
