"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-FA-8693-01A-11D-2397-10"	0	0	0	0	293	7	5	8	13	273	11193	6	30	20	56	2598	4	39	13	56	2654	8	29	53	90	2907	6	8	57	71	3034	1	1	2	4	383	0.0136518771331058	0.0563380281690141	0.126235992089651	0.446291324973339	0.010443864229765	0	3	4	7	360	0.0238907849829352	0.0777777777777778	0.123839009287926	0.628055555555556	0.0194444444444444	0.0238907849829352	7	117	743	5198	0.996178524686412	1	1	0.418604729915507	0.191913715224608	Inf	0.451384969391742	0.571140165352817	0.845971449091826	1	1	0.538195957494285	0.436143398996696	0.995443529783236	1	1	0.40365588147144	0.0634674922600621	0.200166706358657	1	286	266	0
"TCGA-FA-A4BB-01A-11D-A31X-10"	0	0	0	0	125	2	1	3	4	119	4879	0	12	3	15	1142	2	13	5	20	1140	4	12	35	51	1280	2	8	23	33	1317	0	2	0	2	152	0.016	0.0606060606060606	0.115413819286257	0.52511961722488	0.0131578947368421	2	1	2	5	155	0.04	0.0980392156862745	0.12109375	0.809614168247944	0.032258064516129	0.032	4	60	307	2290	0.952286918949428	1	1	0.497387503700681	0.163896858562403	Inf	0.528705211726384	2.81976112920738	0.152680893303892	0.447547149547678	1	3.72669076869816	0.291699427159384	0.993790565554556	1	1	0.266484595008483	1	1	1	121	115	0
"TCGA-FA-A4XK-01A-11D-A31X-10"	0	0	0	0	410	8	4	3	7	395	16195	9	61	7	77	3897	7	59	15	81	4002	18	21	84	123	4191	19	12	83	114	4105	3	0	3	6	580	0.0146341463414634	0.0526315789473684	0.141291108404385	0.372504537205082	0.0103448275862069	4	4	3	11	579	0.0268292682926829	0.0894308943089431	0.13815318539728	0.647331395593749	0.0189982728842832	0.0317073170731707	13	191	1159	7137	0.99978265179885	1	1	0.419153679279821	0.243189664613499	Inf	0.456140350877193	1.35419630156472	0.253800983719489	0.634449852697181	1	1.43676710351407	0.257169870784746	0.999998008833425	1	1	0.229510238185522	1	1	1	397	382	0
"TCGA-FA-A6HN-01A-11D-A31X-10"	0	0	0	0	231	5	3	8	11	215	8815	1	14	7	22	2005	6	16	2	24	2024	11	19	56	86	2406	10	13	60	83	2380	0	1	1	2	243	0.00865800865800866	0.0240963855421687	0.102100840336134	0.236005751400664	0.00823045267489712	3	2	4	9	264	0.038961038961039	0.104651162790698	0.109725685785536	0.953752642706131	0.0340909090909091	0.0346320346320346	8	129	507	4279	0.980459446790316	1	1	0.523455735867433	0.254172531176131	Inf	0.551231661843678	1.34854888701043	0.388121125281001	0.691868092892219	1	1.4065200766891	0.406889750391077	0.99529187756587	1	1	0.380224872285281	0.659442724458204	0.965612560813799	1	223	207	0
"TCGA-FA-A6HO-01A-11D-A31X-10"	0	0	0	0	89	1	1	0	1	87	3567	2	8	1	11	758	1	7	5	13	716	6	9	17	32	1054	4	1	26	31	1039	0	0	0	0	91	0	0	0.0875842155919153	0	0	2	2	1	5	105	0.0561797752808989	0.15625	0.0996204933586338	1.56845238095238	0.0476190476190476	0.0337078651685393	3	50	196	1897	0.883310734679637	1	1	0.580833791990369	0.152132696261783	Inf	0.6044474393531	2.13571428571429	0.241189123128727	0.634449852697181	1	2.4183158697957	0.248338870431894	0.985069494634968	1	1	0.230532948737577	1	1	1	86	84	0
"TCGA-FA-A7DS-01A-11D-A382-10"	0	0	0	0	110	4	4	3	7	99	4059	2	4	6	12	874	3	9	4	16	941	3	8	28	39	1085	3	9	20	32	1159	0	2	0	2	147	0.0181818181818182	0.0625	0.126833477135462	0.492772108843537	0.0136054421768707	1	1	1	3	111	0.0272727272727273	0.0769230769230769	0.102304147465438	0.751905751905752	0.027027027027027	0.0181818181818182	2	52	258	1986	0.988621643227408	1	1	0.296164357869817	0.0510314476908541	Inf	0.32213608957795	1.44961240310078	0.520316079441035	0.790109602114164	1	1.53917917674434	0.181201550387597	0.997030685316727	1	1	0.163847509257477	1	1	1	108	97	0
"TCGA-FA-A7Q1-01A-11D-A382-10"	0	0	0	0	192	3	2	11	13	176	7216	4	8	8	20	1576	5	16	3	24	1642	8	9	49	66	1961	9	13	44	66	2037	4	2	4	10	257	0.0520833333333333	0.151515151515152	0.126165930289642	1.20091970286523	0.0389105058365759	0	0	1	1	187	0.00520833333333333	0.0151515151515152	0.0953595104538501	0.158888348727921	0.0053475935828877	0.046875	9	101	444	3554	0.871528313851379	1	1	0.713324813629943	0.360374289222885	Inf	0.736732186732187	2.11870694223635	0.112704703855162	0.443871204317348	1	2.46202720039152	0.484113145403468	0.980944459691541	1	1	0.454866006310287	1	1	1	183	167	0
"TCGA-FA-A82F-01A-11D-A382-10"	0	0	0	0	180	4	2	4	6	170	6970	3	15	6	24	1537	6	6	8	20	1589	4	18	46	68	1952	7	7	44	58	1892	2	2	1	5	211	0.0277777777777778	0.0862068965517241	0.111522198731501	0.773002124530152	0.023696682464455	2	2	3	7	220	0.0388888888888889	0.102941176470588	0.112704918032787	0.913368983957219	0.0318181818181818	0.0444444444444444	8	93	431	3413	0.889099012148353	1	1	0.681244493335774	0.328097358602946	Inf	0.706439089384577	3.24319763762919	0.0276376025671712	0.226628341050804	1	4.52230048267525	0.396390822376901	0.992613758850713	1	1	0.368380069364144	1	1	1	172	162	0
"TCGA-FA-A86F-01A-11D-A382-10"	0	0	0	0	110	1	4	3	7	102	4182	2	10	4	16	1006	2	15	3	20	1033	5	9	20	34	1096	4	9	19	32	1047	0	3	1	4	135	0.0363636363636364	0.125	0.128939828080229	0.969444444444445	0.0296296296296296	0	1	0	1	142	0.00909090909090909	0.0294117647058824	0.12956204379562	0.227009113504557	0.00704225352112676	0.00909090909090909	1	47	277	1866	0.998624440418823	1	1	0.143393112437322	0.00714685986230387	Inf	0.161176293622142	0	1	1	1	0	0.198370822919559	0.995324092091814	1	1	0.17735109721811	1	1	1	109	101	0
"TCGA-FF-8041-01A-11D-2210-10"	0	0	0	0	439	5	2	8	10	424	17384	9	25	5	39	4034	4	52	6	62	4170	6	28	112	146	4548	10	15	152	177	4632	2	0	15	17	619	0.0387243735763098	0.096045197740113	0.133635578583765	0.718709783412283	0.0274636510500808	1	3	5	9	557	0.020501138952164	0.0616438356164384	0.122471416007036	0.503332431568333	0.0161579892280072	0.0523917995444191	23	257	1176	8004	0.99359706074511	1	1	0.609136307547325	0.408210873693806	Inf	0.641217201166181	1.46364795918367	0.33776629560317	0.657494604175064	1	1.57054579052399	0.591372912801484	0.99726538892181	1	1	0.557908336543022	3.51612333105218e-06	3.60402641432848e-05	0.000144161056573139	416	401	0
"TCGA-FF-8042-01A-11D-2210-10"	0	0	0	0	470	4	2	7	9	457	18737	5	38	20	63	4518	5	33	24	62	4505	15	28	88	131	4786	13	19	169	201	4928	3	6	11	20	638	0.0425531914893617	0.0995024875621891	0.129464285714286	0.768570938411391	0.0313479623824451	4	1	5	10	647	0.0212765957446809	0.0763358778625954	0.135185959047221	0.564673124343712	0.0154559505409583	0.048936170212766	23	262	1285	8429	0.997345831356547	1	1	0.575864662405251	0.386157927967068	Inf	0.610067581404874	1.88988326848249	0.0681740257658505	0.397738293419341	1	2.18628491562184	0.470632409271904	0.999890640958151	1	1	0.435513255244093	0.0325942029399336	0.11136352671144	1	447	434	0
"TCGA-FF-8043-01A-11D-2210-10"	0	0	0	0	290	4	1	5	6	280	11480	5	27	4	36	2597	1	31	5	37	2766	4	12	55	71	2955	5	10	121	136	3162	2	2	12	16	397	0.0551724137931034	0.117647058823529	0.125553447185326	0.937027707808564	0.0403022670025189	0	1	3	4	336	0.0137931034482759	0.0563380281690141	0.113705583756345	0.495472837022133	0.0119047619047619	0.0586206896551724	17	168	733	5384	0.901843750108838	1	1	0.743291808776648	0.461403355665236	Inf	0.766852254710372	1.85447930877672	0.295035530349497	0.634449852697181	1	2.09829611081523	0.711234962172889	0.94080235820681	1	1	0.684367987840637	6.86062977497906e-05	0.000468809701290236	0.00281285820774141	273	263	0
"TCGA-FF-8046-01A-11D-2210-10"	0	0	0	0	249	4	2	4	6	239	9799	2	23	3	28	2308	7	33	3	43	2394	8	16	50	74	2477	8	11	75	94	2620	0	1	9	10	321	0.0401606425702811	0.106382978723404	0.122519083969466	0.868297209518128	0.0311526479750779	1	1	5	7	293	0.0281124497991968	0.0945945945945946	0.118288251917642	0.799695600036897	0.0238907849829352	0.0602409638554217	15	126	614	4483	0.732213934072943	1	1	0.869251395414018	0.518967149279383	Inf	0.88311733314852	0.518831433224756	0.871736852158529	1	1	0.486806277330146	0.929745928338762	0.654776293254643	1	1	0.920885879965164	1.26036688400668e-05	0.000103350084488548	0.000516750422442739	234	224	0
"TCGA-FF-8047-01A-11D-2210-10"	0	0	0	0	289	3	3	2	5	281	11521	4	37	3	44	2729	6	30	3	39	2704	5	11	80	96	3065	7	15	80	102	3023	2	2	5	9	409	0.0311418685121107	0.0882352941176471	0.135296063513067	0.652164533294981	0.0220048899755501	0	0	5	5	396	0.0173010380622837	0.0520833333333333	0.129200652528548	0.403119739057239	0.0126262626262626	0.041522491349481	12	160	805	5283	0.996549895137798	1	1	0.492250132373528	0.277625528036581	Inf	0.527632529250325	1.26045548654244	0.484706508150649	0.764344878237562	1	1.31247995403322	0.472670807453416	0.998393792327595	1	1	0.43755721437322	0.0063295493636051	0.0235919567188917	0.259511523907809	277	269	0
"TCGA-FF-8061-01A-11D-2210-10"	0	0	0	0	331	3	1	8	9	319	13079	4	42	9	55	2992	4	44	11	59	3052	5	13	73	91	3491	7	10	97	114	3544	2	3	4	9	423	0.027190332326284	0.0789473684210526	0.119356659142212	0.661440836132885	0.0212765957446809	0	1	1	2	388	0.00604229607250755	0.021978021978022	0.111142938985964	0.197745553415657	0.00515463917525773	0.0211480362537764	7	175	811	6224	0.999927965768759	1	1	0.307011296863277	0.141718754525481	Inf	0.333633690600398	1.44574599260173	0.410927100181567	0.702000462810177	1	1.53477710340531	0.255131645753246	0.999987682530251	1	1	0.232587399344718	0.361455108359133	0.617485810113519	1	324	312	0
"TCGA-FF-8062-01A-11D-2210-10"	0	0	0	0	271	4	4	10	14	253	10373	9	22	5	36	2349	7	22	6	35	2532	7	8	54	69	2706	7	13	93	113	2786	0	3	5	8	371	0.029520295202952	0.0707964601769911	0.133165829145729	0.531641342461179	0.0215633423180593	3	3	2	8	333	0.029520295202952	0.115942028985507	0.123059866962306	0.942159550855203	0.024024024024024	0.03690036900369	10	151	704	4788	0.997694589843077	1	1	0.450452744325055	0.238920501065532	Inf	0.484542631281762	1.67167207792208	0.264309847516786	0.634449852697181	1	1.854565345892	0.371482683982684	0.999656846313786	1	1	0.340100302467408	0.252412503425707	0.492805363831142	1	261	243	0
"TCGA-FF-A7CQ-01A-11D-A382-10"	0	0	0	0	142	6	4	4	8	128	5248	4	9	8	21	1264	4	7	3	14	1220	6	2	40	48	1380	5	7	33	45	1384	2	2	3	7	161	0.0492957746478873	0.155555555555556	0.116329479768786	1.33719806763285	0.0434782608695652	1	0	4	5	166	0.0352112676056338	0.104166666666667	0.120289855072464	0.865963855421687	0.0301204819277108	0.0704225352112676	10	74	327	2437	0.543649624526474	1	1	1.00710579530478	0.522116711398006	Inf	1.00626183194991	2.30525437864887	0.13351436832358	0.447547149547678	1	2.79324094928324	0.810523229022663	0.773972950426835	1	1	0.790487587218649	0.213756898640463	0.461264886539946	1	132	118	0
"TCGA-FF-A7CR-01A-11D-A382-10"	0	0	0	0	196	4	2	5	7	185	7585	5	22	8	35	1738	2	15	7	24	1754	8	12	46	66	2002	8	4	48	60	2091	2	1	2	5	259	0.0255102040816327	0.0833333333333333	0.123864179818269	0.672779922779923	0.0193050193050193	2	3	2	7	235	0.0357142857142857	0.106060606060606	0.117382617382617	0.90354609929078	0.0297872340425532	0.0408163265306122	8	102	494	3599	0.961247718367585	1	1	0.571468964262208	0.276056652242851	Inf	0.602576370997424	2.07135627530364	0.119087396280264	0.443871204317348	1	2.42773447666981	0.352571280902748	0.997353029929317	1	1	0.323854012268287	1	1	1	188	177	0
"TCGA-FF-A7CW-01A-11D-A382-10"	0	0	0	0	74	0	2	2	4	70	2870	3	4	1	8	689	1	7	1	9	692	4	6	18	28	747	3	3	19	25	742	0	1	1	2	104	0.027027027027027	0.08	0.140161725067385	0.570769230769231	0.0192307692307692	0	0	1	1	115	0.0135135135135135	0.0357142857142857	0.153949129852744	0.231987577639752	0.00869565217391304	0.027027027027027	2	42	219	1270	0.991743470332207	1	1	0.276294941545997	0.047288110591251	Inf	0.309049398090494	0	1	1	1	0	0.367518203134642	0.978855729799207	1	1	0.3315386180435	0.4	0.656	1	72	68	0
"TCGA-FF-A7CX-01A-12D-A382-10"	0	0	0	0	154	5	2	4	6	143	5863	3	5	2	10	1287	7	12	5	24	1273	6	11	37	54	1698	2	6	47	55	1605	0	2	5	7	164	0.0454545454545455	0.127272727272727	0.102180685358255	1.24556541019956	0.0426829268292683	0	1	2	3	181	0.0194805194805195	0.0555555555555556	0.106595995288575	0.521178637200737	0.0165745856353591	0.0454545454545455	7	85	345	2958	0.855889800354019	1	1	0.706150759354955	0.320205041713693	Inf	0.728449905482042	0	1	1	1	0	0.797826086956522	0.785674423698144	1	1	0.779505312951197	0.00309597523219814	0.0141038871689026	0.126934984520124	147	136	0
"TCGA-FM-8000-01A-11D-2210-10"	0	0	0	0	231	3	1	6	7	221	9061	5	21	5	31	2137	7	14	11	32	2285	3	5	57	65	2306	8	10	75	93	2333	1	3	7	11	357	0.0476190476190476	0.118279569892473	0.153021860265752	0.772958645823921	0.030812324929972	0	0	2	2	312	0.00865800865800866	0.0307692307692308	0.13529921942758	0.22741617357002	0.00641025641025641	0.0432900432900433	10	133	669	3970	0.997813033103731	1	1	0.44623723834652	0.236050139071916	Inf	0.484911202399992	0.630384563119989	0.819754198818545	1	1	0.593479428747439	0.472788422339992	0.997600491492842	1	1	0.434266601892698	0.0036074841836048	0.0147906851527797	0.147906851527797	221	211	0
"TCGA-G8-6324-01A-11D-2210-10"	0	0	0	0	10635	202	47	108	155	10278	421398	149	1367	231	1747	96670	145	1473	231	1849	96493	441	361	2570	3372	113808	467	339	2504	3310	114427	61	27	149	237	13925	0.0222849083215797	0.0716012084592145	0.121693306649654	0.588374253526933	0.0170197486535009	65	19	146	230	13996	0.0216267042783263	0.068208778173191	0.122979052439196	0.554637369700952	0.0164332666476136	0.0395862717442407	421	5561	27921	200314	1	1	1	0.543139474096094	0.498502751462388	Inf	0.575290182954101	1.13432100039334	0.074382956837173	0.397738293419341	1	1.15594787023927	0.475250769821498	1	1	1	0.442859087246633	5.17870025030078e-29	2.12326710262332e-27	2.12326710262332e-27	10214	9857	0
"TCGA-GR-7353-01A-11D-2210-10"	0	0	0	0	4572	54	23	36	59	4459	182819	68	594	99	761	42689	77	587	93	757	42306	184	146	1094	1424	48581	176	155	1186	1517	49243	25	14	71	110	6173	0.0240594925634296	0.0725115359261701	0.125357918892025	0.578436021968636	0.017819536692046	36	16	67	119	6205	0.0260279965004374	0.0835674157303371	0.127724830695128	0.654276973987994	0.0191780821917808	0.0435258092738408	199	2441	12378	85446	1	1	1	0.56276825811781	0.495916522036988	Inf	0.595722616372156	1.33912856142619	0.0111248324432512	0.152039376724433	0.456118130173299	1.40830523324828	0.478342730310993	1	1	1	0.444736143773502	4.55746119790566e-13	9.3427954557066e-12	1.86855909114132e-11	4373	4260	0
"TCGA-GR-A4D4-01A-11D-A31X-10"	0	0	0	0	148	4	8	3	11	133	5453	6	14	5	25	1164	8	15	6	29	1220	15	9	18	42	1508	6	5	26	37	1561	2	1	2	5	162	0.0337837837837838	0.135135135135135	0.103779628443306	1.30213546880214	0.0308641975308642	4	5	0	9	165	0.0608108108108108	0.214285714285714	0.109416445623342	1.95844155844156	0.0545454545454545	0.0540540540540541	8	57	327	2742	0.392658204645309	1	1	1.17681725088268	0.556763669526183	Inf	1.15511644318984	2.68152031454784	0.0199627078745549	0.204617755714188	0.818471022856751	3.35220858239598	0.426605504587156	0.955551067285747	1	1	0.399383676443812	0.208695652173913	0.461264886539946	1	140	125	0
"TCGA-GR-A4D5-01A-11D-A31X-10"	0	0	0	0	107	5	0	1	1	101	4141	0	10	3	13	910	3	7	4	14	990	9	12	20	41	1100	5	3	25	33	1141	1	1	1	3	148	0.0280373831775701	0.0909090909090909	0.129710780017528	0.700859950859951	0.0202702702702703	3	2	0	5	123	0.0467289719626168	0.121951219512195	0.111818181818182	1.09062066230418	0.040650406504065	0.0467289719626168	5	54	271	1970	0.854563310013827	1	1	0.673191052691839	0.253743771177851	Inf	0.700794296078554	2.36267791249341	0.080553637563922	0.397738293419341	1	2.90576623326792	0.183763837638376	0.99684871844559	1	1	0.165281146710467	0.282051282051282	0.525641025641026	1	102	96	0
"TCGA-GR-A4D6-01A-11D-A31X-10"	0	0	0	0	91	2	0	4	4	85	3485	1	12	4	17	779	1	6	6	13	811	5	9	19	33	941	2	2	18	22	954	1	0	3	4	128	0.043956043956044	0.181818181818182	0.134171907756813	1.35511363636364	0.03125	0	0	0	0	94	0	0	0.099893730074389	0	0	0.043956043956044	4	40	222	1673	0.773155878660208	1	1	0.753702975314961	0.24420066862029	Inf	0.776003276003276	1.21943371943372	0.582897427501064	0.824096363018746	1	1.25584109296206	0.692111029948868	0.823983046234301	1	1	0.665065548463504	0.485714285714286	0.765934065934066	1	87	81	0
"TCGA-GR-A4D9-01B-11D-A31X-10"	0	0	0	0	554	10	2	5	7	537	22017	10	71	20	101	5363	9	82	11	102	5415	27	30	102	159	5642	30	19	126	175	5597	8	1	6	15	755	0.0270758122743682	0.0857142857142857	0.134893693049848	0.635421002838221	0.0198675496688742	4	2	7	13	796	0.0234657039711191	0.0817610062893082	0.141084721729883	0.579517082266679	0.0163316582914573	0.0451263537906137	25	260	1551	9688	0.996094249309418	1	1	0.600628964952794	0.409618328492315	Inf	0.635639711787528	1.52553530829007	0.0873084058725383	0.397738293419341	1	1.66558212699726	0.413165812661893	0.999970769894072	1	1	0.377704421034945	1	1	1	529	512	0
"TCGA-GS-A9TQ-01A-11D-A382-10"	0	0	0	0	95	1	5	2	7	87	3567	3	5	4	12	829	3	11	2	16	858	4	5	12	21	934	4	6	28	38	946	1	0	1	2	109	0.0210526315789474	0.0526315789473684	0.115221987315011	0.456784162240464	0.018348623853211	0	1	2	3	108	0.0315789473684211	0.142857142857143	0.115631691648822	1.23544973544974	0.0277777777777778	0.0421052631578947	4	44	217	1663	0.818994438176533	1	1	0.696805176585303	0.226596088358714	Inf	0.721966205837174	1.08294930875576	0.625999059899024	0.855532048528666	1	1.09478097878257	0.649769585253456	0.854844199025445	1	1	0.621502138599692	0.523809523809524	0.795414462081129	1	91	83	0
"TCGA-GS-A9TT-01A-11D-A382-10"	0	0	0	0	164	6	1	6	7	151	6191	1	14	7	22	1434	6	11	4	21	1424	2	14	37	53	1628	8	12	35	55	1705	1	5	0	6	203	0.0365853658536585	0.109090909090909	0.119061583577713	0.916256157635468	0.0295566502463054	0	2	0	2	191	0.0121951219512195	0.0377358490566038	0.117321867321867	0.321643781487701	0.0104712041884817	0.00609756097560976	1	81	394	2939	0.999963158543321	1	1	0.0921192619123219	0.00462767720318035	Inf	0.103163303206636	0.845939086294416	0.716125661342246	0.947133939194583	1	0.828888846483916	0	1	1	1	0	1	1	1	163	150	0
"TCGA-GS-A9TU-01A-11D-A382-10"	0	0	0	0	95	6	3	3	6	83	3403	4	10	3	17	797	2	7	3	12	839	3	6	17	26	891	2	3	23	28	876	0	2	2	4	116	0.0421052631578947	0.142857142857143	0.132420091324201	1.07881773399015	0.0344827586206897	0	1	2	3	115	0.0315789473684211	0.115384615384615	0.129068462401796	0.893979933110368	0.0260869565217391	0.0421052631578947	4	41	231	1536	0.855449393374391	1	1	0.648850976091053	0.210486186232338	Inf	0.67994227994228	0	1	1	1	0	0.764935064935065	0.784905878422943	1	1	0.738928380711198	0.06993006993007	0.204795204795205	1	91	79	0
"TCGA-GS-A9TV-01A-11D-A382-10"	0	0	0	0	120	2	1	1	2	116	4756	3	13	5	21	1086	5	18	10	33	1268	5	7	20	32	1206	4	3	23	30	1196	0	0	2	2	171	0.0166666666666667	0.0666666666666667	0.142976588628763	0.466276803118908	0.0116959064327485	0	2	1	3	153	0.025	0.09375	0.126865671641791	0.738970588235294	0.0196078431372549	0.025	3	49	324	2078	0.977260696464083	1	1	0.392774170661675	0.103134966952546	Inf	0.427706552706553	0	1	1	1	0	0.517226528854436	0.94080493319735	1	1	0.481130742362055	0.166666666666667	0.401960784313726	1	117	113	0
"TCGA-GS-A9TW-01A-11D-A382-10"	0	0	0	0	247	7	2	9	11	229	9389	9	14	8	31	2403	2	14	8	24	2279	21	5	62	88	2313	14	18	54	86	2394	6	4	11	21	362	0.0850202429149798	0.244186046511628	0.151211361737678	1.61486573300784	0.0580110497237569	8	1	20	29	342	0.117408906882591	0.329545454545455	0.147859922178988	2.22876794258373	0.0847953216374269	0.182186234817814	45	106	704	4003	4.12222625923499e-06	8.45056383143173e-05	0.000169011276628635	2.41333151892171	1.75033579644729	Inf	1.99254026189043	2.67443181818182	0.000305603004559385	0.00626486159346739	0.0125297231869348	3.78921236874776	1.78679711990596	0.000871620654902873	0.0178682234255089	0.0357364468510178	2.07338179765676	0.00118237692784816	0.00605968175522182	0.0484774540417746	202	184	22
"TCGA-GS-A9TX-01A-11D-A382-10"	0	0	0	0	32	1	3	3	6	25	1025	0	3	2	5	268	1	1	0	2	258	2	2	9	13	276	0	0	5	5	223	0	0	1	1	29	0.03125	0.2	0.130044843049327	1.53793103448276	0.0344827586206897	0	0	0	0	38	0	0	0.13768115942029	0	0	0.03125	1	15	67	432	0.899937870093774	1	1	0.430372582535398	0.0204341692263837	Inf	0.465485074626866	0	1	1	1	0	0.531982942430704	0.867138941184995	1	1	0.496512419836287	1	1	1	31	24	0
"TCGA-GS-A9TY-01A-11D-A38X-10"	0	0	0	0	153	1	5	12	17	135	5535	5	7	3	15	1250	4	9	4	17	1353	4	11	38	53	1421	7	6	37	50	1511	1	0	1	2	194	0.0130718954248366	0.04	0.128391793514229	0.311546391752577	0.0103092783505155	1	2	2	5	194	0.0326797385620915	0.0943396226415094	0.13652357494722	0.691013421513324	0.0257731958762887	0.0326797385620915	5	81	388	2544	0.991441845917962	1	1	0.404821314502182	0.154735944457654	Inf	0.439343083193479	1.37394564198688	0.439096560803753	0.720118359718155	1	1.45682644791765	0.302268041237113	0.998032505738323	1	1	0.273269762758278	1	1	1	148	130	0
"TCGA-GS-A9TZ-01A-11D-A38X-10"	0	0	0	0	385	3	3	11	14	368	15088	15	15	11	41	3508	10	22	9	41	3626	17	20	112	149	3997	23	15	99	137	3957	12	4	21	37	571	0.0961038961038961	0.27007299270073	0.144301238311852	1.87159164994184	0.0647985989492119	9	8	31	48	488	0.124675324675325	0.322147651006711	0.122091568676507	2.63857410056112	0.0983606557377049	0.18961038961039	73	178	1059	6895	1.1480243364291e-10	4.70689977935931e-09	4.70689977935931e-09	2.66978996792917	2.08395885534308	Inf	2.18443318322555	3.94320113314448	4.69871607511737e-09	1.92647359079812e-07	1.92647359079812e-07	7.19293253229688	1.85101745812244	9.38126585375535e-06	0.000384631900003969	0.000384631900003969	2.12909401515751	2.57654446828659e-06	3.52127743999167e-05	0.00010563832319975	312	295	40
"TCGA-GS-A9U3-01A-11D-A38X-10"	0	0	0	0	100	5	2	3	5	90	3690	2	9	0	11	873	3	6	1	10	847	2	4	33	39	961	1	5	24	30	1009	0	1	1	2	111	0.02	0.0666666666666667	0.110009910802775	0.606006006006006	0.018018018018018	1	0	4	5	117	0.05	0.128205128205128	0.121748178980229	1.05303528380451	0.0427350427350427	0.06	6	54	228	1742	0.707566007036313	1	1	0.84901214568527	0.351826836422299	Inf	0.864035087719298	2.88011695906433	0.309487733023015	0.634449852697181	1	3.81606466142491	0.757925515543244	0.802891825466684	1	1	0.734749355214562	0.102564102564103	0.280341880341882	1	94	84	0
"TCGA-GS-A9U4-01A-11D-A38X-10"	0	0	0	0	33	3	1	0	1	29	1189	1	0	1	2	271	0	2	1	3	304	2	0	12	14	326	3	1	6	10	288	2	0	0	2	39	0.0606060606060606	0.2	0.135416666666667	1.47692307692308	0.0512820512820513	0	0	0	0	48	0	0	0.147239263803681	0	0	0.0606060606060606	2	21	87	527	0.856301703963651	1	1	0.577317429438408	0.0949487076936947	Inf	0.613693153423288	2.82298850574713	0.152820977894329	0.447547149547678	1	4.02484081650826	0	1	1	1	0	0.333333333333333	0.594202898550724	1	31	27	0
"TCGA-RQ-A68N-01A-11D-A31X-10"	0	0	0	0	235	2	2	6	8	225	9225	5	15	6	26	2145	4	14	8	26	2110	5	23	60	88	2517	11	12	62	85	2453	1	3	7	11	286	0.0468085106382979	0.129411764705882	0.116591928251121	1.10995475113122	0.0384615384615385	0	4	4	8	312	0.0340425531914894	0.0909090909090909	0.123957091775924	0.733391608391608	0.0256410256410256	0.051063829787234	12	126	598	4372	0.91237343071932	1	1	0.696333089631934	0.390298907894247	Inf	0.722698851243275	0.519439799331104	0.871407560037449	1	1	0.487456524001996	0.749355776084215	0.879101564828875	1	1	0.724558381396582	0.00109803113140154	0.00605968175522182	0.0450192763874631	223	213	0
"TCGA-RQ-A6JB-01A-11D-A31X-10"	0	0	0	0	121	5	4	6	10	106	4346	3	10	5	18	977	3	10	4	17	996	3	10	27	40	1176	6	4	21	31	1197	1	0	0	1	120	0.00826446280991736	0.032258064516129	0.100250626566416	0.321774193548387	0.00833333333333333	1	1	2	4	160	0.0330578512396694	0.1	0.136054421768707	0.735	0.025	0.0330578512396694	4	53	280	2093	0.915111907944429	1	1	0.564259436340435	0.18506658396308	Inf	0.594736842105263	1.88333333333333	0.28938642212551	0.634449852697181	1	2.13482400962815	0.353125	0.981606913441445	1	1	0.325099343199461	1	1	1	117	102	0
"TCGA-RQ-AAAT-01A-11D-A38X-10"	0	0	0	0	145	3	2	1	3	139	5699	3	11	3	17	1244	4	14	8	26	1411	7	3	34	44	1527	8	7	37	52	1517	1	0	3	4	192	0.0275862068965517	0.0769230769230769	0.126565589980224	0.607772435897436	0.0208333333333333	1	1	3	5	176	0.0344827586206897	0.113636363636364	0.115258677144728	0.98592458677686	0.0284090909090909	0.0551724137931034	8	78	368	2676	0.828928493293572	1	1	0.74588267558273	0.357072821653292	Inf	0.769464105156724	1.10289855072464	0.557489216432664	0.816323495490687	1	1.11865760717768	0.699020208205756	0.87152347577731	1	1	0.67131233561449	0.153434800493624	0.393176676264912	1	137	131	0
"TCGA-VB-A8QN-01A-11D-A382-10"	0	0	0	0	199	2	0	4	4	193	7913	3	13	4	20	1776	4	18	4	26	1851	9	10	56	75	2147	9	7	56	72	2139	3	2	4	9	238	0.0452261306532663	0.125	0.111266947171576	1.1234243697479	0.0378151260504202	0	1	3	4	262	0.0201005025125628	0.0533333333333333	0.122030740568235	0.43704834605598	0.0152671755725191	0.050251256281407	10	120	500	3786	0.944503765417823	1	1	0.631056407652373	0.332662584154372	Inf	0.659384615384615	1.42866666666667	0.352801982728083	0.657494604175064	1	1.51422173764874	0.53575	0.980062423922643	1	1	0.504861971296943	0.226194642616772	0.463699017364383	1	189	183	0
"Totals"	0	0	0	0	23107	404	166	332	498	22205	910405	378	2644	559	3581	210471	385	2807	560	3752	211747	911	973	5450	7334	242993	933	825	5780	7538	245194	153	104	377	634	30454	0.0274375730298178	0.0841071902361369	0.124203691770598	0.677171419280205	0.0208182833125369	159	98	350	607	30165	0.0262690959449517	0.0827652031633488	0.124139378500615	0.666711918192329	0.020122658710426	0.0449647293028087	1039	12035	60619	427568	1	NA	NA	0.608929464448721	0.576663320759925	Inf	0.640006683836883	1.36260858198315	1.3203656721151e-08	NA	NA	1.43644915696462	0.521353264408414	1	NA	NA	0.488223898404303	4.79579353151317e-65	NA	NA	22068	21166	NA
