"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-FA-8693-01A-11D-2397-10"	0	0	2	2	299	9	5	8	13	277	11357	6	31	20	57	2632	4	39	13	56	2690	9	29	55	93	2959	6	8	57	71	3076	1	1	2	4	387	0.0133779264214047	0.0563380281690141	0.125812743823147	0.447792699348546	0.0103359173126615	0	3	4	7	364	0.0234113712374582	0.0752688172043011	0.123014531936465	0.611869313482217	0.0192307692307692	0.0234113712374582	7	120	751	5284	0.996881735243291	1	1	0.410472578082212	0.188301961414159	Inf	0.442926491711838	0.535730137594319	0.863768668190862	1	1	0.50261278584596	0.430497431995435	0.995989874143457	1	1	0.398303300251451	0.0634674922600621	0.200166706358657	1	292	270	0
"TCGA-FA-A4BB-01A-11D-A31X-10"	0	1	0	1	128	2	1	3	4	122	5002	0	12	3	15	1174	2	13	5	20	1162	4	12	38	54	1319	2	8	23	33	1347	0	2	0	2	153	0.015625	0.0606060606060606	0.11358574610245	0.53357100415924	0.0130718954248366	2	1	2	5	163	0.0390625	0.0925925925925926	0.12357846853677	0.74926153147012	0.0306748466257669	0.03125	4	63	316	2350	0.963471728203717	1	1	0.472271420536175	0.155855551256025	Inf	0.503684111090119	2.81223628691983	0.153336521088844	0.519903471935547	1	3.71549895069155	0.276613405270803	0.995607836003816	1	1	0.252168718208281	1	1	1	124	118	0
"TCGA-FA-A4XK-01A-11D-A31X-10"	0	0	1	1	413	8	4	3	7	398	16318	9	62	8	79	3940	7	59	15	81	4031	18	21	84	123	4214	19	12	84	115	4133	3	0	3	6	585	0.0145278450363196	0.0521739130434783	0.141543672876845	0.36860646599777	0.0102564102564103	4	4	3	11	583	0.026634382566586	0.0894308943089431	0.138348362600854	0.646418162294831	0.0188679245283019	0.0314769975786925	13	192	1168	7179	0.999807823857474	1	1	0.416192511060681	0.241496729006875	Inf	0.4531866020715	1.35202239911144	0.255113077973889	0.628907882254409	1	1.43408699548241	0.255228718199609	0.999998293953562	1	1	0.2276678129034	1	1	1	400	385	0
"TCGA-FA-A6HN-01A-11D-A31X-10"	0	0	3	3	243	5	3	9	12	226	9266	1	14	7	22	2083	6	16	2	24	2122	12	19	60	91	2549	12	14	63	89	2512	0	1	1	2	253	0.00823045267489712	0.0224719101123595	0.100716560509554	0.223120309099791	0.00790513833992095	4	2	4	10	276	0.0411522633744856	0.10989010989011	0.108277755982738	1.01489090619525	0.036231884057971	0.037037037037037	9	138	529	4532	0.974084061046999	1	1	0.558775200808582	0.284523634553171	Inf	0.585741290845261	1.5945179584121	0.23928954319492	0.628907882254409	1	1.71319281046682	0.388906819124902	0.996909446066762	1	1	0.363061208344486	1	1	1	234	217	0
"TCGA-FA-A6HO-01A-11D-A31X-10"	0	0	1	1	91	1	1	0	1	89	3649	2	9	1	12	785	1	7	5	13	730	6	9	17	32	1067	5	1	26	32	1067	0	0	0	0	93	0	0	0.0871602624179944	0	0	2	2	1	5	107	0.0549450549450549	0.15625	0.100281162136832	1.5581191588785	0.0467289719626168	0.032967032967033	3	51	200	1934	0.891121117387363	1	1	0.568941785346331	0.149131736797596	Inf	0.592777777777778	1.94	0.277765844239445	0.628907882254409	1	2.14785442517058	0.248139534883721	0.985128754610011	1	1	0.230327084701179	1	1	1	88	86	0
"TCGA-FA-A7DS-01A-11D-A382-10"	0	0	1	1	119	5	4	3	7	107	4387	2	4	6	12	939	3	9	4	16	1006	3	8	31	42	1179	3	9	25	37	1263	0	2	1	3	157	0.0252100840336134	0.0810810810810811	0.1243072050673	0.65226372869685	0.0191082802547771	1	1	2	4	121	0.0336134453781513	0.0952380952380952	0.102629346904156	0.927981109799292	0.0330578512396694	0.0336134453781513	4	58	278	2164	0.931678012255382	1	1	0.536946192676864	0.176593056102766	Inf	0.566720816894871	1.46402877697842	0.516556213182585	0.730303611740896	1	1.5564930581388	0.470580678314491	0.96045364937189	1	1	0.440719471979182	0.559440559440559	0.790933204726308	1	115	103	0
"TCGA-FA-A7Q1-01A-11D-A382-10"	0	0	0	0	192	3	2	11	13	176	7216	4	8	8	20	1576	5	16	3	24	1642	8	9	49	66	1961	9	13	44	66	2037	4	2	4	10	257	0.0520833333333333	0.151515151515152	0.126165930289642	1.20091970286523	0.0389105058365759	0	0	1	1	187	0.00520833333333333	0.0151515151515152	0.0953595104538501	0.158888348727921	0.0053475935828877	0.046875	9	101	444	3554	0.871528313851379	1	1	0.713324813629943	0.360374289222885	Inf	0.736732186732187	2.11870694223635	0.112704703855162	0.462089285806164	1	2.46202720039152	0.484113145403468	0.980944459691541	1	1	0.454866006310287	1	1	1	183	167	0
"TCGA-FA-A82F-01A-11D-A382-10"	1	0	4	5	195	5	2	4	6	184	7544	3	15	7	25	1626	6	9	8	23	1699	7	19	48	74	2152	9	7	46	62	2067	2	2	1	5	219	0.0256410256410256	0.0806451612903226	0.105950653120464	0.761157755192223	0.0228310502283105	2	2	3	7	239	0.0358974358974359	0.0945945945945946	0.111059479553903	0.851747144634174	0.0292887029288703	0.041025641025641	8	102	458	3761	0.918446885897227	1	1	0.644117996047886	0.311041963503241	Inf	0.669948392219135	2.30294759825327	0.0881200441289678	0.40143575658752	1	2.73632436007124	0.391991080553749	0.993179125961799	1	1	0.365026588357313	1	1	1	187	176	0
"TCGA-FA-A86F-01A-11D-A382-10"	0	0	1	1	113	1	4	3	7	105	4305	2	10	4	16	1032	2	15	3	20	1068	5	9	22	36	1133	4	9	20	33	1072	0	3	1	4	140	0.0353982300884956	0.121212121212121	0.130597014925373	0.928138528138528	0.0285714285714286	0	1	0	1	147	0.00884955752212389	0.0277777777777778	0.129744042365402	0.214096749811035	0.00680272108843537	0.00884955752212389	1	50	287	1918	0.999132076936326	1	1	0.133717461744661	0.00667194933071204	Inf	0.1506456241033	0	1	1	1	0	0.182926829268293	0.9970261150542	1	1	0.163067325561118	1	1	1	112	104	0
"TCGA-FF-8041-01A-11D-2210-10"	0	0	0	0	439	5	2	8	10	424	17384	9	25	5	39	4034	4	52	6	62	4170	6	28	112	146	4548	10	15	152	177	4632	2	0	15	17	619	0.0387243735763098	0.096045197740113	0.133635578583765	0.718709783412283	0.0274636510500808	1	3	5	9	557	0.020501138952164	0.0616438356164384	0.122471416007036	0.503332431568333	0.0161579892280072	0.0523917995444191	23	257	1176	8004	0.99359706074511	1	1	0.609136307547325	0.408210873693806	Inf	0.641217201166181	1.46364795918367	0.33776629560317	0.628907882254409	1	1.57054579052399	0.591372912801484	0.99726538892181	1	1	0.557908336543022	3.51612333105218e-06	3.60402641432848e-05	0.000144161056573139	416	401	0
"TCGA-FF-8042-01A-11D-2210-10"	0	0	1	1	473	6	2	7	9	458	18778	5	39	20	64	4536	5	33	24	62	4516	15	28	88	131	4794	13	19	169	201	4932	3	6	11	20	639	0.0422832980972516	0.0995024875621891	0.12956204379562	0.767991030761685	0.0312989045383412	4	1	5	10	649	0.0211416490486258	0.0763358778625954	0.13537755527743	0.563873957585951	0.0154083204930663	0.0486257928118393	23	262	1288	8438	0.997400495833794	1	1	0.57513683570432	0.385672831042549	Inf	0.609398496240601	1.88781055900621	0.0685026538387848	0.40143575658752	1	2.18352263032405	0.470116248157189	0.999893290008709	1	1	0.434962787971144	0.0325942029399336	0.11136352671144	1	450	435	0
"TCGA-FF-8043-01A-11D-2210-10"	0	0	1	1	294	5	1	6	7	282	11562	5	27	4	36	2630	1	32	5	38	2777	4	12	55	71	2980	5	10	122	137	3175	2	2	12	16	397	0.054421768707483	0.116788321167883	0.12503937007874	0.93401239221166	0.0403022670025189	0	1	3	4	343	0.0136054421768707	0.0563380281690141	0.11510067114094	0.48946741674537	0.0116618075801749	0.0578231292517007	17	169	740	5415	0.908774058191169	1	1	0.736119004784086	0.457033301594785	Inf	0.760207788433595	1.84834834834835	0.296434746058989	0.628907882254409	1	2.09042086210419	0.70487860742098	0.945470316540413	1	1	0.677589414866475	6.86062977497906e-05	0.000468809701290236	0.00281285820774141	277	265	0
"TCGA-FF-8046-01A-11D-2210-10"	0	0	2	2	258	4	2	4	6	248	10168	2	25	3	30	2411	8	33	3	44	2453	10	16	51	77	2554	9	11	77	97	2750	0	1	9	10	335	0.0387596899224806	0.103092783505155	0.121818181818182	0.846284043699031	0.0298507462686567	1	1	5	7	302	0.0271317829457364	0.0909090909090909	0.118245888801879	0.768813967489464	0.0231788079470199	0.0581395348837209	15	132	637	4667	0.783170967474204	1	1	0.832595208927544	0.497763144089155	Inf	0.849645980841316	0.438238453276047	0.91197524637003	1	1	0.407078001040912	0.910714285714286	0.684840749516229	1	1	0.899745937896954	1.26036688400668e-05	0.000103350084488548	0.000516750422442739	243	233	0
"TCGA-FF-8047-01A-11D-2210-10"	0	0	0	0	289	3	3	2	5	281	11521	4	37	3	44	2729	6	30	3	39	2704	5	11	80	96	3065	7	15	80	102	3023	2	2	5	9	409	0.0311418685121107	0.0882352941176471	0.135296063513067	0.652164533294981	0.0220048899755501	0	0	5	5	396	0.0173010380622837	0.0520833333333333	0.129200652528548	0.403119739057239	0.0126262626262626	0.041522491349481	12	160	805	5283	0.996549895137798	1	1	0.492250132373528	0.277625528036581	Inf	0.527632529250325	1.26045548654244	0.484706508150649	0.709748815506307	1	1.31247995403322	0.472670807453416	0.998393792327595	1	1	0.43755721437322	0.0063295493636051	0.0235919567188917	0.259511523907809	277	269	0
"TCGA-FF-8061-01A-11D-2210-10"	0	0	2	2	339	6	2	8	10	323	13243	4	42	9	55	3007	4	44	11	59	3085	5	13	74	92	3540	7	11	99	117	3611	2	3	4	9	425	0.0265486725663717	0.0769230769230769	0.117695929105511	0.653574660633484	0.0211764705882353	0	1	1	2	388	0.00589970501474926	0.0217391304347826	0.109604519774011	0.198341550874048	0.00515463917525773	0.0206489675516224	7	178	813	6338	0.999930081077736	1	1	0.306608801996125	0.141566057104424	Inf	0.332814733552741	1.4659696596966	0.403803031536089	0.662236971719186	1	1.55904036265333	0.254214391854901	0.99998826633097	1	1	0.232045395667329	0.361455108359133	0.631827022306899	1	332	316	0
"TCGA-FF-8062-01A-11D-2210-10"	0	0	1	1	277	6	4	10	14	257	10537	9	22	5	36	2393	7	22	6	35	2569	7	8	56	71	2758	9	13	93	115	2817	0	3	5	8	379	0.0288808664259928	0.0695652173913043	0.134540291089812	0.517058621085236	0.0211081794195251	3	3	2	8	338	0.0288808664259928	0.112676056338028	0.122552574329224	0.919409950829236	0.0236686390532544	0.036101083032491	10	155	717	4858	0.99841670937403	1	1	0.437171546230844	0.23200794374928	Inf	0.471239592578505	1.45789748953975	0.340404652613107	0.628907882254409	1	1.56341242318953	0.365289751294076	0.999731022340785	1	1	0.334043742234591	0.252412503425707	0.517445632022699	1	267	247	0
"TCGA-FF-A7CQ-01A-11D-A382-10"	0	0	2	2	153	8	4	4	8	137	5617	4	9	8	21	1328	4	7	3	14	1282	6	2	44	52	1491	7	7	36	50	1516	2	2	3	7	172	0.0457516339869281	0.14	0.113456464379947	1.23395348837209	0.0406976744186047	1	0	4	5	169	0.0326797385620915	0.0961538461538462	0.113346747149564	0.848315885298134	0.029585798816568	0.065359477124183	10	83	341	2666	0.619964768436839	1	1	0.941960482045397	0.490398219062874	Inf	0.948191593352884	2.03496503496504	0.17752801480726	0.519903471935547	1	2.34454818633758	0.771590909090909	0.814600504967916	1	1	0.749751873921431	0.213756898640463	0.486890713569943	1	143	127	0
"TCGA-FF-A7CR-01A-11D-A382-10"	0	0	4	4	217	8	2	5	7	202	8282	6	22	8	36	1858	3	16	8	27	1899	9	14	47	70	2222	10	5	54	69	2303	2	1	3	6	276	0.0276497695852535	0.0869565217391304	0.119843682153713	0.725582860743541	0.0217391304347826	2	3	2	7	248	0.032258064516129	0.1	0.111611161116112	0.895967741935484	0.0282258064516129	0.0414746543778802	9	111	524	4001	0.944084037281193	1	1	0.619148575851057	0.313783350034595	Inf	0.647662213740458	1.81799919646444	0.171546991391814	0.519903471935547	1	2.03574652916216	0.427499811049807	0.992961875931722	1	1	0.397737872209691	1	1	1	208	193	0
"TCGA-FF-A7CW-01A-11D-A382-10"	0	0	0	0	74	0	2	2	4	70	2870	3	4	1	8	689	1	7	1	9	692	4	6	18	28	747	3	3	19	25	742	0	1	1	2	104	0.027027027027027	0.08	0.140161725067385	0.570769230769231	0.0192307692307692	0	0	1	1	115	0.0135135135135135	0.0357142857142857	0.153949129852744	0.231987577639752	0.00869565217391304	0.027027027027027	2	42	219	1270	0.991743470332207	1	1	0.276294941545997	0.047288110591251	Inf	0.309049398090494	0	1	1	1	0	0.367518203134642	0.978855729799207	1	1	0.3315386180435	0.4	0.656	1	72	68	0
"TCGA-FF-A7CX-01A-12D-A382-10"	0	1	0	1	156	5	2	4	6	145	5945	3	5	2	10	1293	7	12	5	24	1288	6	11	37	54	1719	3	7	47	57	1645	0	2	5	7	165	0.0448717948717949	0.12280701754386	0.100303951367781	1.22434875066454	0.0424242424242424	0	1	2	3	181	0.0192307692307692	0.0555555555555556	0.105293775450844	0.527624309392265	0.0165745856353591	0.0448717948717949	7	86	346	3018	0.852501636382146	1	1	0.710036545126206	0.322089102942109	Inf	0.731804338367829	0	1	1	1	0	0.810211946050096	0.772062116360491	1	1	0.79302117463335	0.00309597523219814	0.0141038871689026	0.126934984520124	149	138	0
"TCGA-FM-8000-01A-11D-2210-10"	0	0	0	0	231	3	1	6	7	221	9061	5	21	5	31	2137	7	14	11	32	2285	3	5	57	65	2306	8	10	75	93	2333	1	3	7	11	357	0.0476190476190476	0.118279569892473	0.153021860265752	0.772958645823921	0.030812324929972	0	0	2	2	312	0.00865800865800866	0.0307692307692308	0.13529921942758	0.22741617357002	0.00641025641025641	0.0432900432900433	10	133	669	3970	0.997813033103731	1	1	0.44623723834652	0.236050139071916	Inf	0.484911202399992	0.630384563119989	0.819754198818545	1	1	0.593479428747439	0.472788422339992	0.997600491492842	1	1	0.434266601892698	0.0036074841836048	0.0147906851527797	0.147906851527797	221	211	0
"TCGA-G8-6324-01A-11D-2210-10"	0	0	40	40	11049	258	49	110	159	10632	435912	156	1432	247	1835	99927	152	1532	246	1930	99917	456	377	2633	3466	117647	488	352	2561	3401	118421	67	29	152	248	14448	0.0224454701782967	0.0729197294913261	0.12200538755795	0.597676307176933	0.0171650055370986	67	19	153	239	14521	0.021630916825052	0.0689555683785343	0.123428561714281	0.558667843332376	0.0164589215618759	0.0397321024527107	439	5699	28969	207099	1	1	1	0.550696263362403	0.506319616118113	Inf	0.582829134290708	1.15674177715395	0.0423646422194668	0.347390066199628	1	1.18266427059729	0.478521561155763	1	1	1	0.445989345071634	1.76874615361449e-28	7.25185922981941e-27	7.25185922981941e-27	10610	10193	0
"TCGA-GR-7353-01A-11D-2210-10"	0	0	21	21	4791	69	23	41	64	4658	190978	72	629	111	812	44548	78	614	100	792	44235	194	156	1139	1489	50658	188	163	1214	1565	51537	30	14	74	118	6475	0.0246295136714673	0.0753993610223642	0.125637891223781	0.600132334982175	0.0182239382239382	39	16	71	126	6515	0.026299311208516	0.0846205507051713	0.128607524971377	0.65797511245166	0.0193399846508058	0.0446670841160509	214	2521	12990	89205	1	1	1	0.582939869897806	0.515988397860552	Inf	0.615569281953633	1.42103974462837	0.00173869639619249	0.0237621840812974	0.0712865522438921	1.51384316387604	0.484804421459902	1	1	1	0.450972807468718	5.15500193496699e-12	1.05677539666823e-10	2.11355079333647e-10	4577	4444	0
"TCGA-GR-A4D4-01A-11D-A31X-10"	1	1	0	2	152	4	8	3	11	137	5617	6	14	5	25	1176	9	15	7	31	1295	15	9	18	42	1545	6	5	28	39	1601	2	1	2	5	169	0.0328947368421053	0.128205128205128	0.105559025608994	1.21453497193142	0.029585798816568	4	5	0	9	165	0.0592105263157895	0.214285714285714	0.106796116504854	2.00649350649351	0.0545454545454545	0.0526315789473684	8	59	334	2812	0.421912131790942	1	1	1.14151462916141	0.540907756844417	Inf	1.12467602109214	2.69118905047049	0.019627284410857	0.201179665211284	0.804718660845137	3.36571556858544	0.409528768549857	0.962497902860416	1	1	0.382768757557433	0.208695652173913	0.486890713569943	1	144	129	0
"TCGA-GR-A4D5-01A-11D-A31X-10"	0	0	0	0	107	5	0	1	1	101	4141	0	10	3	13	910	3	7	4	14	990	9	12	20	41	1100	5	3	25	33	1141	1	1	1	3	148	0.0280373831775701	0.0909090909090909	0.129710780017528	0.700859950859951	0.0202702702702703	3	2	0	5	123	0.0467289719626168	0.121951219512195	0.111818181818182	1.09062066230418	0.040650406504065	0.0467289719626168	5	54	271	1970	0.854563310013827	1	1	0.673191052691839	0.253743771177851	Inf	0.700794296078554	2.36267791249341	0.080553637563922	0.40143575658752	1	2.90576623326792	0.183763837638376	0.99684871844559	1	1	0.165281146710467	0.282051282051282	0.55067155067155	1	102	96	0
"TCGA-GR-A4D6-01A-11D-A31X-10"	0	0	2	2	95	2	0	4	4	89	3649	1	13	4	18	825	1	6	8	15	839	5	9	19	33	982	2	2	19	23	1003	1	0	3	4	131	0.0421052631578947	0.173913043478261	0.130608175473579	1.33156322602058	0.0305343511450382	0	0	0	0	98	0	0	0.09979633401222	0	0	0.0421052631578947	4	41	229	1756	0.77766547837712	1	1	0.748205835853732	0.242739252062285	Inf	0.770499757399321	1.23830318153462	0.576925386723098	0.788464695188234	1	1.27784672768671	0.684325442427028	0.829546901474107	1	1	0.657384685696501	0.485714285714286	0.737566137566138	1	91	85	0
"TCGA-GR-A4D9-01B-11D-A31X-10"	0	1	1	2	560	10	2	5	7	543	22263	10	71	20	101	5422	10	83	11	104	5480	27	31	105	163	5709	30	19	126	175	5652	8	1	6	15	763	0.0267857142857143	0.0857142857142857	0.134996461429582	0.634937277663359	0.0196592398427261	4	2	7	13	803	0.0232142857142857	0.0797546012269939	0.140655105973025	0.567022438860408	0.0161892901618929	0.0446428571428571	25	263	1566	9795	0.996704063918387	1	1	0.594585529590802	0.405596820270412	Inf	0.629756013197105	1.52732405726961	0.0867048867487343	0.40143575658752	1	1.66784849274092	0.408278184140253	0.999977452964296	1	1	0.373013323549774	1	1	1	535	518	0
"TCGA-GS-A9TQ-01A-11D-A382-10"	0	0	0	0	95	1	5	2	7	87	3567	3	5	4	12	829	3	11	2	16	858	4	5	12	21	934	4	6	28	38	946	1	0	1	2	109	0.0210526315789474	0.0526315789473684	0.115221987315011	0.456784162240464	0.018348623853211	0	1	2	3	108	0.0315789473684211	0.142857142857143	0.115631691648822	1.23544973544974	0.0277777777777778	0.0421052631578947	4	44	217	1663	0.818994438176533	1	1	0.696805176585303	0.226596088358714	Inf	0.721966205837174	1.08294930875576	0.625999059899024	0.827934240511612	1	1.09478097878257	0.649769585253456	0.854844199025445	1	1	0.621502138599692	0.523809523809524	0.767006802721089	1	91	83	0
"TCGA-GS-A9TT-01A-11D-A382-10"	0	0	3	3	182	10	2	6	8	164	6724	1	14	7	22	1521	6	12	4	22	1526	4	16	41	61	1815	9	12	38	59	1862	2	5	0	7	214	0.0384615384615385	0.11864406779661	0.114930182599356	1.03231427213686	0.0327102803738318	0	2	0	2	201	0.010989010989011	0.0327868852459016	0.110743801652893	0.29606068020553	0.00995024875621891	0.010989010989011	2	90	415	3262	0.999770854953606	1	1	0.174714982645685	0.0304594933373003	Inf	0.192613933996857	1.3631139944393	0.441463112889065	0.670369912164877	1	1.42897000377012	0	1	1	1	0	0.470588235294118	0.737566137566138	1	180	162	0
"TCGA-GS-A9TU-01A-11D-A382-10"	0	0	0	0	95	6	3	3	6	83	3403	4	10	3	17	797	2	7	3	12	839	3	6	17	26	891	2	3	23	28	876	0	2	2	4	116	0.0421052631578947	0.142857142857143	0.132420091324201	1.07881773399015	0.0344827586206897	0	1	2	3	115	0.0315789473684211	0.115384615384615	0.129068462401796	0.893979933110368	0.0260869565217391	0.0421052631578947	4	41	231	1536	0.855449393374391	1	1	0.648850976091053	0.210486186232338	Inf	0.67994227994228	0	1	1	1	0	0.764935064935065	0.784905878422943	1	1	0.738928380711198	0.06993006993007	0.204795204795205	1	91	79	0
"TCGA-GS-A9TV-01A-11D-A382-10"	1	0	0	1	122	2	1	1	2	118	4838	3	14	6	23	1108	5	18	10	33	1294	5	7	20	32	1228	4	3	23	30	1208	0	0	2	2	172	0.0163934426229508	0.0666666666666667	0.142384105960265	0.468217054263566	0.0116279069767442	0	2	1	3	154	0.0245901639344262	0.09375	0.125407166123779	0.747564935064935	0.0194805194805195	0.0245901639344262	3	49	326	2110	0.97617232887959	1	1	0.3963736755256	0.104084207084828	Inf	0.431099575271354	0	1	1	1	0	0.521329718932801	0.93859852166197	1	1	0.485539994464583	0.166666666666667	0.427083333333334	1	119	115	0
"TCGA-GS-A9TW-01A-11D-A382-10"	0	0	0	0	247	7	2	9	11	229	9389	9	14	8	31	2403	2	14	8	24	2279	21	5	62	88	2313	14	18	54	86	2394	6	4	11	21	362	0.0850202429149798	0.244186046511628	0.151211361737678	1.61486573300784	0.0580110497237569	8	1	20	29	342	0.117408906882591	0.329545454545455	0.147859922178988	2.22876794258373	0.0847953216374269	0.182186234817814	45	106	704	4003	4.12222625923499e-06	8.45056383143173e-05	0.000169011276628635	2.41333151892171	1.75033579644729	Inf	1.99254026189043	2.67443181818182	0.000305603004559385	0.00626486159346739	0.0125297231869348	3.78921236874776	1.78679711990596	0.000871620654902873	0.0178682234255089	0.0357364468510178	2.07338179765676	0.00118237692784816	0.00605968175522182	0.0484774540417746	202	184	22
"TCGA-GS-A9TX-01A-11D-A382-10"	0	0	1	1	35	1	3	3	6	28	1148	1	3	2	6	285	1	3	0	4	305	2	2	9	13	302	0	0	5	5	256	0	0	1	1	35	0.0285714285714286	0.2	0.13671875	1.46285714285714	0.0285714285714286	0	0	0	0	40	0	0	0.132450331125828	0	0	0.0285714285714286	1	15	75	483	0.900241769975783	1	1	0.429800669334968	0.020440653791033	Inf	0.465	0	1	1	1	0	0.531428571428571	0.867434804120203	1	1	0.495860225712453	1	1	1	34	27	0
"TCGA-GS-A9TY-01A-11D-A38X-10"	0	0	1	1	155	1	5	12	17	137	5617	5	7	3	15	1276	4	10	4	18	1370	4	11	39	54	1437	7	6	37	50	1534	1	0	1	2	196	0.0129032258064516	0.04	0.127770534550196	0.313061224489796	0.0102040816326531	1	2	2	5	196	0.032258064516129	0.0925925925925926	0.136395267919276	0.678854875283447	0.0255102040816327	0.032258064516129	5	82	392	2579	0.992029831060859	1	1	0.401248871113692	0.153426509200434	Inf	0.435579404175463	1.37801484230056	0.437501694739426	0.670369912164877	1	1.46179965308728	0.299174274973147	0.998198753573891	1	1	0.270445684672861	1	1	1	150	132	0
"TCGA-GS-A9TZ-01A-11D-A38X-10"	0	0	3	3	399	5	3	12	15	379	15539	17	15	11	43	3603	10	23	9	42	3723	17	21	113	151	4131	27	15	101	143	4082	12	4	21	37	586	0.0927318295739348	0.258741258741259	0.143557079862812	1.80235805150481	0.0631399317406143	9	8	31	48	495	0.120300751879699	0.317880794701987	0.119825708061002	2.6528597230584	0.096969696969697	0.182957393483709	73	185	1081	7132	2.6105899573838e-10	1.07034188252736e-08	1.07034188252736e-08	2.60317831445035	2.03469817819435	Inf	2.14970706136294	3.62612480026911	3.39050545617355e-08	1.39010723703116e-06	1.39010723703116e-06	6.02170977272967	1.84614453560653	1.03009698505639e-05	0.00042233976387312	0.00042233976387312	2.11751512675407	2.57654446828659e-06	3.52127743999167e-05	0.00010563832319975	326	306	39
"TCGA-GS-A9U3-01A-11D-A38X-10"	0	0	0	0	100	5	2	3	5	90	3690	2	9	0	11	873	3	6	1	10	847	2	4	33	39	961	1	5	24	30	1009	0	1	1	2	111	0.02	0.0666666666666667	0.110009910802775	0.606006006006006	0.018018018018018	1	0	4	5	117	0.05	0.128205128205128	0.121748178980229	1.05303528380451	0.0427350427350427	0.06	6	54	228	1742	0.707566007036313	1	1	0.84901214568527	0.351826836422299	Inf	0.864035087719298	2.88011695906433	0.309487733023015	0.628907882254409	1	3.81606466142491	0.757925515543244	0.802891825466684	1	1	0.734749355214562	0.102564102564103	0.280341880341882	1	94	84	0
"TCGA-GS-A9U4-01A-11D-A38X-10"	0	0	0	0	33	3	1	0	1	29	1189	1	0	1	2	271	0	2	1	3	304	2	0	12	14	326	3	1	6	10	288	2	0	0	2	39	0.0606060606060606	0.2	0.135416666666667	1.47692307692308	0.0512820512820513	0	0	0	0	48	0	0	0.147239263803681	0	0	0.0606060606060606	2	21	87	527	0.856301703963651	1	1	0.577317429438408	0.0949487076936947	Inf	0.613693153423288	2.82298850574713	0.152820977894329	0.519903471935547	1	4.02484081650826	0	1	1	1	0	0.333333333333333	0.621212121212121	1	31	27	0
"TCGA-RQ-A68N-01A-11D-A31X-10"	0	0	3	3	247	5	2	7	9	233	9553	5	15	6	26	2216	5	14	8	27	2173	6	23	62	91	2621	13	13	63	89	2543	1	3	7	11	295	0.0445344129554656	0.123595505617978	0.11600471883602	1.06543515520853	0.0372881355932203	0	4	4	8	321	0.0323886639676113	0.0879120879120879	0.122472338801984	0.717811783232344	0.0249221183800623	0.048582995951417	12	132	616	4548	0.932073570206984	1	1	0.671236724155509	0.376677687434108	Inf	0.698593073593074	0.441216678058783	0.910422663892255	1	1	0.410223084912166	0.737714285714286	0.890561371098256	1	1	0.712446834619058	0.00109803113140154	0.00605968175522182	0.0450192763874631	235	221	0
"TCGA-RQ-A6JB-01A-11D-A31X-10"	0	0	1	1	124	6	4	6	10	108	4428	3	10	5	18	986	3	10	4	17	1009	4	11	27	42	1211	6	4	21	31	1222	1	0	0	1	122	0.00806451612903226	0.032258064516129	0.0998363338788871	0.323109465891063	0.00819672131147541	1	1	2	4	162	0.032258064516129	0.0952380952380952	0.133773740710157	0.711934156378601	0.0246913580246914	0.032258064516129	4	54	284	2149	0.917467876702242	1	1	0.560617217422579	0.184001910563067	Inf	0.590820786789704	1.71338028169014	0.330372637876056	0.628907882254409	1	1.89101292784503	0.356954225352113	0.980528627799931	1	1	0.329093093385138	1	1	1	120	104	0
"TCGA-RQ-AAAT-01A-11D-A38X-10"	0	0	3	3	156	3	2	1	3	150	6150	4	11	3	18	1343	4	14	8	26	1477	11	3	37	51	1674	8	8	39	55	1656	1	0	3	4	201	0.0256410256410256	0.0727272727272727	0.121376811594203	0.599185888738128	0.0199004975124378	2	1	3	6	186	0.0384615384615385	0.117647058823529	0.111111111111111	1.05882352941176	0.032258064516129	0.0576923076923077	9	86	387	2943	0.786583091955099	1	1	0.795884627271247	0.399969140998064	Inf	0.815177478580171	1.35862913096695	0.38406396198774	0.656109268395722	1	1.42569381556361	0.679314565483476	0.887368436730103	1	1	0.651897725012447	0.369849964277209	0.631827022306899	1	147	141	0
"TCGA-VB-A8QN-01A-11D-A382-10"	0	0	0	0	199	2	0	4	4	193	7913	3	13	4	20	1776	4	18	4	26	1851	9	10	56	75	2147	9	7	56	72	2139	3	2	4	9	238	0.0452261306532663	0.125	0.111266947171576	1.1234243697479	0.0378151260504202	0	1	3	4	262	0.0201005025125628	0.0533333333333333	0.122030740568235	0.43704834605598	0.0152671755725191	0.050251256281407	10	120	500	3786	0.944503765417823	1	1	0.631056407652373	0.332662584154372	Inf	0.659384615384615	1.42866666666667	0.352801982728083	0.628907882254409	1	1.51422173764874	0.53575	0.980062423922643	1	1	0.504861971296943	0.226194642616772	0.488104228804613	1	189	183	0
"Totals"	3	4	105	112	23936	503	170	343	513	22920	939720	394	2752	590	3736	216927	398	2904	586	3888	218481	952	1007	5597	7556	250889	986	852	5902	7740	253423	165	106	385	656	31451	0.0274064171122995	0.0847545219638243	0.124104757658145	0.682927258899184	0.0208578423579536	166	98	362	626	31157	0.0261530748663102	0.08284806776072	0.124186393185831	0.667126773194443	0.0200917931764932	0.0450367647058824	1078	12359	62608	441704	1	NA	NA	0.615372371525382	0.583334857213387	Inf	0.646228214274446	1.37576321367451	1.78362201629049e-09	NA	NA	1.45315361907141	0.523275015836553	1	NA	NA	0.490156064678787	3.72462363679734e-63	NA	NA	22858	21842	NA
