[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
PATHOLOGIC_STAGE            "PATHOLOGIC_STAGE"           
PATHOLOGY_T_STAGE           "PATHOLOGY_T_STAGE"          
PATHOLOGY_N_STAGE           "PATHOLOGY_N_STAGE"          
PATHOLOGY_M_STAGE           "PATHOLOGY_M_STAGE"          
GENDER                      "GENDER"                     
RADIATION_THERAPY           "RADIATION_THERAPY"          
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
HISTOLOGICAL_TYPE           "HISTOLOGICAL_TYPE"          
NUMBER_PACK_YEARS_SMOKED    "NUMBER_PACK_YEARS_SMOKED"   
RESIDUAL_TUMOR              "RESIDUAL_TUMOR"             
NUMBER_OF_LYMPH_NODES       "NUMBER_OF_LYMPH_NODES"      
RACE                        "RACE"                       
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=0"            
YEARS_TO_BIRTH              "Spearman correlation test" "N=30"           
PATHOLOGIC_STAGE            "Kruskal-Wallis test"       "N=0"            
PATHOLOGY_T_STAGE           "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE           "Spearman correlation test" "N=30"           
PATHOLOGY_M_STAGE           "Wilcoxon test"             "N=0"            
GENDER                      "Wilcoxon test"             "N=0"            
RADIATION_THERAPY           "Wilcoxon test"             "N=0"            
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=4"            
HISTOLOGICAL_TYPE           "Wilcoxon test"             "N=30"           
NUMBER_PACK_YEARS_SMOKED    "Spearman correlation test" "N=6"            
RESIDUAL_TUMOR              "Kruskal-Wallis test"       "N=0"            
NUMBER_OF_LYMPH_NODES       "Spearman correlation test" "N=0"            
RACE                        "Kruskal-Wallis test"       "N=30"           
                            Associated with                    
DAYS_TO_DEATH_OR_LAST_FUP   " "                                
YEARS_TO_BIRTH              "older"                            
PATHOLOGIC_STAGE            " "                                
PATHOLOGY_T_STAGE           "higher stage"                     
PATHOLOGY_N_STAGE           "higher stage"                     
PATHOLOGY_M_STAGE           " "                                
GENDER                      " "                                
RADIATION_THERAPY           " "                                
KARNOFSKY_PERFORMANCE_SCORE "higher score"                     
HISTOLOGICAL_TYPE           "esophagus squamous cell carcinoma"
NUMBER_PACK_YEARS_SMOKED    "higher number_pack_years_smoked"  
RESIDUAL_TUMOR              " "                                
NUMBER_OF_LYMPH_NODES       " "                                
RACE                        " "                                
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   " "                                                                                       
YEARS_TO_BIRTH              "N=17"                                                                                    
PATHOLOGIC_STAGE            " "                                                                                       
PATHOLOGY_T_STAGE           "N=16"                                                                                    
PATHOLOGY_N_STAGE           "N=15"                                                                                    
PATHOLOGY_M_STAGE           " "                                                                                       
GENDER                      " "                                                                                       
RADIATION_THERAPY           " "                                                                                       
KARNOFSKY_PERFORMANCE_SCORE "N=2"                                                                                     
HISTOLOGICAL_TYPE           "N=30"                                                                                    
NUMBER_PACK_YEARS_SMOKED    "N=3"                                                                                     
RESIDUAL_TUMOR              " "                                                                                       
NUMBER_OF_LYMPH_NODES       " "                                                                                       
RACE                        " "                                                                                       
                            Associated with                        
DAYS_TO_DEATH_OR_LAST_FUP   " "                              " "   
YEARS_TO_BIRTH              "younger"                        "N=13"
PATHOLOGIC_STAGE            " "                              " "   
PATHOLOGY_T_STAGE           "lower stage"                    "N=14"
PATHOLOGY_N_STAGE           "lower stage"                    "N=15"
PATHOLOGY_M_STAGE           " "                              " "   
GENDER                      " "                              " "   
RADIATION_THERAPY           " "                              " "   
KARNOFSKY_PERFORMANCE_SCORE "lower score"                    "N=2" 
HISTOLOGICAL_TYPE           "esophagus adenocarcinoma  nos"  "N=0" 
NUMBER_PACK_YEARS_SMOKED    "lower number_pack_years_smoked" "N=3" 
RESIDUAL_TUMOR              " "                              " "   
NUMBER_OF_LYMPH_NODES       " "                              " "   
RACE                        " "                              " "   
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
