[1] "ofn"        "-oTHNSC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/20125733/HNSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/20203267/transformed.cor.cli.txt"

nPatients in clinical file=528, in cluster file=510, common to both=510
[1]  49 510
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           359            151 
  TP53 MUTATED TP53 WILD-TYPE 
           359            151 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
             112              398 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
             112              398 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             55             455 
  CASP8 MUTATED CASP8 WILD-TYPE 
             55             455 
[1] "NSD1 MUTATION ANALYSIS"
[1] 3
  NSD1 MUTATED NSD1 WILD-TYPE 
            63            447 
  NSD1 MUTATED NSD1 WILD-TYPE 
            63            447 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             24             486 
  HLA-B MUTATED HLA-B WILD-TYPE 
             24             486 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            78            432 
  MLL2 MUTATED MLL2 WILD-TYPE 
            78            432 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              23              487 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              23              487 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
           114            396 
  FAT1 MUTATED FAT1 WILD-TYPE 
           114            396 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              87              423 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              87              423 
[1] "JUB MUTATION ANALYSIS"
[1] 3
  JUB MUTATED JUB WILD-TYPE 
           33           477 
  JUB MUTATED JUB WILD-TYPE 
           33           477 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              26              484 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              26              484 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             33             477 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             33             477 
[1] "ZNF750 MUTATION ANALYSIS"
[1] 3
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              19              491 
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              19              491 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
            15            495 
  RAC1 MUTATED RAC1 WILD-TYPE 
            15            495 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             24             486 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             24             486 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
             22             488 
  HLA-A MUTATED HLA-A WILD-TYPE 
             22             488 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            29            481 
  HRAS MUTATED HRAS WILD-TYPE 
            29            481 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              94              416 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              94              416 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             39             471 
  EP300 MUTATED EP300 WILD-TYPE 
             39             471 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           18           492 
  RB1 MUTATED RB1 WILD-TYPE 
           18           492 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            496 
  PTEN MUTATED PTEN WILD-TYPE 
            14            496 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             17             493 
  RASA1 MUTATED RASA1 WILD-TYPE 
             17             493 
[1] "MAPK1 MUTATION ANALYSIS"
[1] 3
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              9             501 
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              9             501 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               7              503 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               7              503 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             488 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             488 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             17             493 
  KDM6A MUTATED KDM6A WILD-TYPE 
             17             493 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            10            500 
  RHOA MUTATED RHOA WILD-TYPE 
            10            500 
[1] "CREBBP MUTATION ANALYSIS"
[1] 3
  CREBBP MUTATED CREBBP WILD-TYPE 
              35              475 
  CREBBP MUTATED CREBBP WILD-TYPE 
              35              475 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               8              502 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               8              502 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            506 
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            506 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             13             497 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             13             497 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            14            496 
  CUL3 MUTATED CUL3 WILD-TYPE 
            14            496 
[1] "TIGD4 MUTATION ANALYSIS"
[1] 3
  TIGD4 MUTATED TIGD4 WILD-TYPE 
              7             503 
  TIGD4 MUTATED TIGD4 WILD-TYPE 
              7             503 
[1] "MYH9 MUTATION ANALYSIS"
[1] 3
  MYH9 MUTATED MYH9 WILD-TYPE 
            22            488 
  MYH9 MUTATED MYH9 WILD-TYPE 
            22            488 
[1] "C3ORF59 MUTATION ANALYSIS"
[1] 3
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
               11               499 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
               11               499 
[1] "HUWE1 MUTATION ANALYSIS"
[1] 3
  HUWE1 MUTATED HUWE1 WILD-TYPE 
             45             465 
  HUWE1 MUTATED HUWE1 WILD-TYPE 
             45             465 
[1] "SLC9A6 MUTATION ANALYSIS"
[1] 3
  SLC9A6 MUTATED SLC9A6 WILD-TYPE 
               5              505 
  SLC9A6 MUTATED SLC9A6 WILD-TYPE 
               5              505 
[1] "ZNF623 MUTATION ANALYSIS"
[1] 3
  ZNF623 MUTATED ZNF623 WILD-TYPE 
              11              499 
  ZNF623 MUTATED ZNF623 WILD-TYPE 
              11              499 
[1] "MLL4 MUTATION ANALYSIS"
[1] 3
  MLL4 MUTATED MLL4 WILD-TYPE 
            20            490 
  MLL4 MUTATED MLL4 WILD-TYPE 
            20            490 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            16            494 
  CTCF MUTATED CTCF WILD-TYPE 
            16            494 
[1] "NCOR1 MUTATION ANALYSIS"
[1] 3
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             18             492 
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             18             492 
[1] "PTPN14 MUTATION ANALYSIS"
[1] 3
  PTPN14 MUTATED PTPN14 WILD-TYPE 
              15              495 
  PTPN14 MUTATED PTPN14 WILD-TYPE 
              15              495 
[1] "ITGB1 MUTATION ANALYSIS"
[1] 3
  ITGB1 MUTATED ITGB1 WILD-TYPE 
             13             497 
  ITGB1 MUTATED ITGB1 WILD-TYPE 
             13             497 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            17            493 
  IRS4 MUTATED IRS4 WILD-TYPE 
            17            493 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             7            503 
  SRPX MUTATED SRPX WILD-TYPE 
             7            503 
[1] "KIAA1949 MUTATION ANALYSIS"
[1] 3
  KIAA1949 MUTATED KIAA1949 WILD-TYPE 
                 6                504 
  KIAA1949 MUTATED KIAA1949 WILD-TYPE 
                 6                504 
[1] "NOTCH2 MUTATION ANALYSIS"
[1] 3
  NOTCH2 MUTATED NOTCH2 WILD-TYPE 
              20              490 
  NOTCH2 MUTATED NOTCH2 WILD-TYPE 
              20              490 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               5              505 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               5              505 
[1] "LCP1 MUTATION ANALYSIS"
[1] 3
  LCP1 MUTATED LCP1 WILD-TYPE 
            15            495 
  LCP1 MUTATED LCP1 WILD-TYPE 
            15            495 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 510 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 510 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      131    117     80     27
  TP53 WILD-TYPE     16     13    105     15
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          131             16
  CLUS_2          117             13
  CLUS_3           80            105
  CLUS_4           27             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       62     64     84     82      8     44     15
  TP53 WILD-TYPE     22     11     10      6     68     30      4
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           62             22
  CLUS_2           64             11
  CLUS_3           84             10
  CLUS_4           82              6
  CLUS_5            8             68
  CLUS_6           44             30
  CLUS_7           15              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       50     49     65
  TP53 WILD-TYPE     17     14     15
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           50             17
  CLUS_2           49             14
  CLUS_3           65             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       62     68     34
  TP53 WILD-TYPE     16     17     13
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           62             16
  CLUS_2           68             17
  CLUS_3           34             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      119    126    109
  TP53 WILD-TYPE     20     79     49
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          119             20
  CLUS_2          126             79
  CLUS_3          109             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      144     84    117      9
  TP53 WILD-TYPE     32     15     48     53
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          144             32
  CLUS_2           84             15
  CLUS_3          117             48
  CLUS_4            9             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      138    101    117
  TP53 WILD-TYPE     71     50     28
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          138             71
  CLUS_2          101             50
  CLUS_3          117             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      155    113     88
  TP53 WILD-TYPE     33     24     92
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          155             33
  CLUS_2          113             24
  CLUS_3           88             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       54    100     62     92     18
  TP53 WILD-TYPE     14     39     31     22     28
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           54             14
  CLUS_2          100             39
  CLUS_3           62             31
  CLUS_4           92             22
  CLUS_5           18             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      115    144     67
  TP53 WILD-TYPE     23     94     17
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          115             23
  CLUS_2          144             94
  CLUS_3           67             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       38     28     30     15
  CDKN2A WILD-TYPE    109    102    155     27
D2V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             38              109
  CLUS_2             28              102
  CLUS_3             30              155
  CLUS_4             15               27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKN2A MUTATED       20     12     30     23      1     22      4
  CDKN2A WILD-TYPE     64     63     64     65     75     52     15
D2V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             20               64
  CLUS_2             12               63
  CLUS_3             30               64
  CLUS_4             23               65
  CLUS_5              1               75
  CLUS_6             22               52
  CLUS_7              4               15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       13     24     19
  CDKN2A WILD-TYPE     54     39     61
D2V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             13               54
  CLUS_2             24               39
  CLUS_3             19               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       23     20     13
  CDKN2A WILD-TYPE     55     65     34
D2V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             23               55
  CLUS_2             20               65
  CLUS_3             13               34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       30     35     46
  CDKN2A WILD-TYPE    109    170    112
D2V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             30              109
  CLUS_2             35              170
  CLUS_3             46              112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       46     24     40      1
  CDKN2A WILD-TYPE    130     75    125     61
D2V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             46              130
  CLUS_2             24               75
  CLUS_3             40              125
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       38     37     36
  CDKN2A WILD-TYPE    171    114    109
D2V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             38              171
  CLUS_2             37              114
  CLUS_3             36              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       52     27     32
  CDKN2A WILD-TYPE    136    110    148
D2V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             52              136
  CLUS_2             27              110
  CLUS_3             32              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED       11     39     14     35      4
  CDKN2A WILD-TYPE     57    100     79     79     42
D2V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11               57
  CLUS_2             39              100
  CLUS_3             14               79
  CLUS_4             35               79
  CLUS_5              4               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       38     42     23
  CDKN2A WILD-TYPE    100    196     61
D2V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             38              100
  CLUS_2             42              196
  CLUS_3             23               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = CASP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        7      0     41      6
  CASP8 WILD-TYPE    140    130    144     36
D3V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             7             140
  CLUS_2             0             130
  CLUS_3            41             144
  CLUS_4             6              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP8 MUTATED        8      2      5      1      0     36      3
  CASP8 WILD-TYPE     76     73     89     87     76     38     16
D3V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             8              76
  CLUS_2             2              73
  CLUS_3             5              89
  CLUS_4             1              87
  CLUS_5             0              76
  CLUS_6            36              38
  CLUS_7             3              16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        1     14      7
  CASP8 WILD-TYPE     66     49     73
D3V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1              66
  CLUS_2            14              49
  CLUS_3             7              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       11      6      5
  CASP8 WILD-TYPE     67     79     42
D3V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            11              67
  CLUS_2             6              79
  CLUS_3             5              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       10      7     38
  CASP8 WILD-TYPE    129    198    120
D3V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            10             129
  CLUS_2             7             198
  CLUS_3            38             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED       16      4     35      0
  CASP8 WILD-TYPE    160     95    130     62
D3V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            16             160
  CLUS_2             4              95
  CLUS_3            35             130
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       15     26     13
  CASP8 WILD-TYPE    194    125    132
D3V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            15             194
  CLUS_2            26             125
  CLUS_3            13             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       18     18     18
  CASP8 WILD-TYPE    170    119    162
D3V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            18             170
  CLUS_2            18             119
  CLUS_3            18             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        4     27      2     15      3
  CASP8 WILD-TYPE     64    112     91     99     43
D3V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             4              64
  CLUS_2            27             112
  CLUS_3             2              91
  CLUS_4            15              99
  CLUS_5             3              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       16     21     14
  CASP8 WILD-TYPE    122    217     70
D3V10, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            16             122
  CLUS_2            21             217
  CLUS_3            14              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = NSD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED       20     26     14      2
  NSD1 WILD-TYPE    127    104    171     40
D4V1, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           20            127
  CLUS_2           26            104
  CLUS_3           14            171
  CLUS_4            2             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NSD1 MUTATED        4     49      1      1      5      3      0
  NSD1 WILD-TYPE     80     26     93     87     71     71     19
D4V2, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            4             80
  CLUS_2           49             26
  CLUS_3            1             93
  CLUS_4            1             87
  CLUS_5            5             71
  CLUS_6            3             71
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        6     10      5
  NSD1 WILD-TYPE     61     53     75
D4V3, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            6             61
  CLUS_2           10             53
  CLUS_3            5             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        7      4     10
  NSD1 WILD-TYPE     71     81     37
D4V4, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            7             71
  CLUS_2            4             81
  CLUS_3           10             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        9     43     10
  NSD1 WILD-TYPE    130    162    148
D4V5, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            9            130
  CLUS_2           43            162
  CLUS_3           10            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED       10     40      6      6
  NSD1 WILD-TYPE    166     59    159     56
D4V6, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           10            166
  CLUS_2           40             59
  CLUS_3            6            159
  CLUS_4            6             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       38     16      9
  NSD1 WILD-TYPE    171    135    136
D4V7, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           38            171
  CLUS_2           16            135
  CLUS_3            9            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       12     32     19
  NSD1 WILD-TYPE    176    105    161
D4V8, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           12            176
  CLUS_2           32            105
  CLUS_3           19            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NSD1 MUTATED        6     10     29      9      5
  NSD1 WILD-TYPE     62    129     64    105     41
D4V9, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            6             62
  CLUS_2           10            129
  CLUS_3           29             64
  CLUS_4            9            105
  CLUS_5            5             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       12     46      1
  NSD1 WILD-TYPE    126    192     83
D4V10, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           12            126
  CLUS_2           46            192
  CLUS_3            1             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        5      3     13      3
  HLA-B WILD-TYPE    142    127    172     39
D5V1, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5             142
  CLUS_2             3             127
  CLUS_3            13             172
  CLUS_4             3              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-B MUTATED        1      1      3      4      3     12      0
  HLA-B WILD-TYPE     83     74     91     84     73     62     19
D5V2, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              74
  CLUS_3             3              91
  CLUS_4             4              84
  CLUS_5             3              73
  CLUS_6            12              62
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        2      3      2
  HLA-B WILD-TYPE     65     60     78
D5V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              65
  CLUS_2             3              60
  CLUS_3             2              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        3      1      3
  HLA-B WILD-TYPE     75     84     44
D5V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              75
  CLUS_2             1              84
  CLUS_3             3              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        3      7     13
  HLA-B WILD-TYPE    136    198    145
D5V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3             136
  CLUS_2             7             198
  CLUS_3            13             145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        4      5     13      1
  HLA-B WILD-TYPE    172     94    152     61
D5V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             4             172
  CLUS_2             5              94
  CLUS_3            13             152
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED       13      9      2
  HLA-B WILD-TYPE    196    142    143
D5V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            13             196
  CLUS_2             9             142
  CLUS_3             2             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        5      8     11
  HLA-B WILD-TYPE    183    129    169
D5V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5             183
  CLUS_2             8             129
  CLUS_3            11             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        0     12      4      5      2
  HLA-B WILD-TYPE     68    127     89    109     44
D5V9, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              68
  CLUS_2            12             127
  CLUS_3             4              89
  CLUS_4             5             109
  CLUS_5             2              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        2     14      7
  HLA-B WILD-TYPE    136    224     77
D5V10, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2             136
  CLUS_2            14             224
  CLUS_3             7              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       19     30     21      7
  MLL2 WILD-TYPE    128    100    164     35
D6V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           19            128
  CLUS_2           30            100
  CLUS_3           21            164
  CLUS_4            7             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL2 MUTATED        8     15     12     21     11     10      1
  MLL2 WILD-TYPE     76     60     82     67     65     64     18
D6V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            8             76
  CLUS_2           15             60
  CLUS_3           12             82
  CLUS_4           21             67
  CLUS_5           11             65
  CLUS_6           10             64
  CLUS_7            1             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       15     10     12
  MLL2 WILD-TYPE     52     53     68
D6V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           15             52
  CLUS_2           10             53
  CLUS_3           12             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       14     18      5
  MLL2 WILD-TYPE     64     67     42
D6V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           14             64
  CLUS_2           18             67
  CLUS_3            5             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       17     36     23
  MLL2 WILD-TYPE    122    169    135
D6V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           17            122
  CLUS_2           36            169
  CLUS_3           23            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       21     19     27      9
  MLL2 WILD-TYPE    155     80    138     53
D6V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           21            155
  CLUS_2           19             80
  CLUS_3           27            138
  CLUS_4            9             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       37     21     19
  MLL2 WILD-TYPE    172    130    126
D6V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           37            172
  CLUS_2           21            130
  CLUS_3           19            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       22     27     28
  MLL2 WILD-TYPE    166    110    152
D6V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           22            166
  CLUS_2           27            110
  CLUS_3           28            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED       10     17     16     19      7
  MLL2 WILD-TYPE     58    122     77     95     39
D6V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           10             58
  CLUS_2           17            122
  CLUS_3           16             77
  CLUS_4           19             95
  CLUS_5            7             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       19     42      8
  MLL2 WILD-TYPE    119    196     76
D6V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           19            119
  CLUS_2           42            196
  CLUS_3            8             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        5      1     15      2
  TGFBR2 WILD-TYPE    142    129    170     40
D7V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5              142
  CLUS_2              1              129
  CLUS_3             15              170
  CLUS_4              2               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR2 MUTATED        4      5      3      1      1      8      1
  TGFBR2 WILD-TYPE     80     70     91     87     75     66     18
D7V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4               80
  CLUS_2              5               70
  CLUS_3              3               91
  CLUS_4              1               87
  CLUS_5              1               75
  CLUS_6              8               66
  CLUS_7              1               18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        2      2      4
  TGFBR2 WILD-TYPE     65     61     76
D7V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2               61
  CLUS_3              4               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        3      4      1
  TGFBR2 WILD-TYPE     75     81     46
D7V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              4               81
  CLUS_3              1               46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        5      6     12
  TGFBR2 WILD-TYPE    134    199    146
D7V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5              134
  CLUS_2              6              199
  CLUS_3             12              146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        9      4      8      2
  TGFBR2 WILD-TYPE    167     95    157     60
D7V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              9              167
  CLUS_2              4               95
  CLUS_3              8              157
  CLUS_4              2               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        8      9      6
  TGFBR2 WILD-TYPE    201    142    139
D7V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              8              201
  CLUS_2              9              142
  CLUS_3              6              139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        9      8      6
  TGFBR2 WILD-TYPE    179    129    174
D7V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              9              179
  CLUS_2              8              129
  CLUS_3              6              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        3      9      3      4      3
  TGFBR2 WILD-TYPE     65    130     90    110     43
D7V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              9              130
  CLUS_3              3               90
  CLUS_4              4              110
  CLUS_5              3               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        6     10      6
  TGFBR2 WILD-TYPE    132    228     78
D7V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              6              132
  CLUS_2             10              228
  CLUS_3              6               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       26     34     41     12
  FAT1 WILD-TYPE    121     96    144     30
D8V1, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           26            121
  CLUS_2           34             96
  CLUS_3           41            144
  CLUS_4           12             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAT1 MUTATED       16     15     20     23      3     34      3
  FAT1 WILD-TYPE     68     60     74     65     73     40     16
D8V2, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             68
  CLUS_2           15             60
  CLUS_3           20             74
  CLUS_4           23             65
  CLUS_5            3             73
  CLUS_6           34             40
  CLUS_7            3             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       15     12     19
  FAT1 WILD-TYPE     52     51     61
D8V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           15             52
  CLUS_2           12             51
  CLUS_3           19             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       16     22      8
  FAT1 WILD-TYPE     62     63     39
D8V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             62
  CLUS_2           22             63
  CLUS_3            8             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       31     38     43
  FAT1 WILD-TYPE    108    167    115
D8V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           31            108
  CLUS_2           38            167
  CLUS_3           43            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       41     20     48      3
  FAT1 WILD-TYPE    135     79    117     59
D8V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           41            135
  CLUS_2           20             79
  CLUS_3           48            117
  CLUS_4            3             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       44     35     33
  FAT1 WILD-TYPE    165    116    112
D8V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           44            165
  CLUS_2           35            116
  CLUS_3           33            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       46     30     36
  FAT1 WILD-TYPE    142    107    144
D8V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           46            142
  CLUS_2           30            107
  CLUS_3           36            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED       16     44     16     26      3
  FAT1 WILD-TYPE     52     95     77     88     43
D8V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             52
  CLUS_2           44             95
  CLUS_3           16             77
  CLUS_4           26             88
  CLUS_5            3             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       36     45     24
  FAT1 WILD-TYPE    102    193     60
D8V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           36            102
  CLUS_2           45            193
  CLUS_3           24             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED       31     11     34      9
  NOTCH1 WILD-TYPE    116    119    151     33
D9V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             31              116
  CLUS_2             11              119
  CLUS_3             34              151
  CLUS_4              9               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED       19      5     19     14      3     23      4
  NOTCH1 WILD-TYPE     65     70     75     74     73     51     15
D9V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             19               65
  CLUS_2              5               70
  CLUS_3             19               75
  CLUS_4             14               74
  CLUS_5              3               73
  CLUS_6             23               51
  CLUS_7              4               15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       12     13     14
  NOTCH1 WILD-TYPE     55     50     66
D9V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             12               55
  CLUS_2             13               50
  CLUS_3             14               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       21     11      7
  NOTCH1 WILD-TYPE     57     74     40
D9V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             21               57
  CLUS_2             11               74
  CLUS_3              7               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       30     15     41
  NOTCH1 WILD-TYPE    109    190    117
D9V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             30              109
  CLUS_2             15              190
  CLUS_3             41              117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED       37     10     36      3
  NOTCH1 WILD-TYPE    139     89    129     59
D9V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             37              139
  CLUS_2             10               89
  CLUS_3             36              129
  CLUS_4              3               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       16     39     31
  NOTCH1 WILD-TYPE    193    112    114
D9V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             16              193
  CLUS_2             39              112
  CLUS_3             31              114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       41     22     23
  NOTCH1 WILD-TYPE    147    115    157
D9V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             41              147
  CLUS_2             22              115
  CLUS_3             23              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED       13     30      6     22      4
  NOTCH1 WILD-TYPE     55    109     87     92     42
D9V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             13               55
  CLUS_2             30              109
  CLUS_3              6               87
  CLUS_4             22               92
  CLUS_5              4               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       32     31     12
  NOTCH1 WILD-TYPE    106    207     72
D9V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             32              106
  CLUS_2             31              207
  CLUS_3             12               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = JUB MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED        7     14     10      2
  JUB WILD-TYPE    140    116    175     40
D10V1, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7           140
  CLUS_2          14           116
  CLUS_3          10           175
  CLUS_4           2            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JUB MUTATED        1      5      6      9      2      8      2
  JUB WILD-TYPE     83     70     88     79     74     66     17
D10V2, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           1            83
  CLUS_2           5            70
  CLUS_3           6            88
  CLUS_4           9            79
  CLUS_5           2            74
  CLUS_6           8            66
  CLUS_7           2            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        5      6      2
  JUB WILD-TYPE     62     57     78
D10V3, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           5            62
  CLUS_2           6            57
  CLUS_3           2            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        6      5      2
  JUB WILD-TYPE     72     80     45
D10V4, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           6            72
  CLUS_2           5            80
  CLUS_3           2            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        4     13     16
  JUB WILD-TYPE    135    192    142
D10V5, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           4           135
  CLUS_2          13           192
  CLUS_3          16           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED        9      8     13      3
  JUB WILD-TYPE    167     91    152     59
D10V6, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           9           167
  CLUS_2           8            91
  CLUS_3          13           152
  CLUS_4           3            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED       19     10      4
  JUB WILD-TYPE    190    141    141
D10V7, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1          19           190
  CLUS_2          10           141
  CLUS_3           4           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        9     11     13
  JUB WILD-TYPE    179    126    167
D10V8, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           9           179
  CLUS_2          11           126
  CLUS_3          13           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JUB MUTATED        2     11      8      9      3
  JUB WILD-TYPE     66    128     85    105     43
D10V9, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           2            66
  CLUS_2          11           128
  CLUS_3           8            85
  CLUS_4           9           105
  CLUS_5           3            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        7     20      6
  JUB WILD-TYPE    131    218     78
D10V10, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7           131
  CLUS_2          20           218
  CLUS_3           6            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        5      9      9      3
  NFE2L2 WILD-TYPE    142    121    176     39
D11V1, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5              142
  CLUS_2              9              121
  CLUS_3              9              176
  CLUS_4              3               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFE2L2 MUTATED        1      3      0     14      1      7      0
  NFE2L2 WILD-TYPE     83     72     94     74     75     67     19
D11V2, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               72
  CLUS_3              0               94
  CLUS_4             14               74
  CLUS_5              1               75
  CLUS_6              7               67
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        6      5      2
  NFE2L2 WILD-TYPE     61     58     78
D11V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              6               61
  CLUS_2              5               58
  CLUS_3              2               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        5      6      2
  NFE2L2 WILD-TYPE     73     79     45
D11V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5               73
  CLUS_2              6               79
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        7     12      7
  NFE2L2 WILD-TYPE    132    193    151
D11V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              132
  CLUS_2             12              193
  CLUS_3              7              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        7      8      9      2
  NFE2L2 WILD-TYPE    169     91    156     60
D11V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              169
  CLUS_2              8               91
  CLUS_3              9              156
  CLUS_4              2               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED       13      4      9
  NFE2L2 WILD-TYPE    196    147    136
D11V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1             13              196
  CLUS_2              4              147
  CLUS_3              9              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        9      5     12
  NFE2L2 WILD-TYPE    179    132    168
D11V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              9              179
  CLUS_2              5              132
  CLUS_3             12              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        3      6      4     10      2
  NFE2L2 WILD-TYPE     65    133     89    104     44
D11V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              6              133
  CLUS_3              4               89
  CLUS_4             10              104
  CLUS_5              2               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        7     16      2
  NFE2L2 WILD-TYPE    131    222     82
D11V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              131
  CLUS_2             16              222
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        9     11      9      4
  FBXW7 WILD-TYPE    138    119    176     38
D12V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             9             138
  CLUS_2            11             119
  CLUS_3             9             176
  CLUS_4             4              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXW7 MUTATED        1      6      6      8      3      8      1
  FBXW7 WILD-TYPE     83     69     88     80     73     66     18
D12V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             6              69
  CLUS_3             6              88
  CLUS_4             8              80
  CLUS_5             3              73
  CLUS_6             8              66
  CLUS_7             1              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        2      1      7
  FBXW7 WILD-TYPE     65     62     73
D12V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             7              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        2      7      1
  FBXW7 WILD-TYPE     76     78     46
D12V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              76
  CLUS_2             7              78
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        4     16     12
  FBXW7 WILD-TYPE    135    189    146
D12V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4             135
  CLUS_2            16             189
  CLUS_3            12             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        8      9     12      3
  FBXW7 WILD-TYPE    168     90    153     59
D12V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8             168
  CLUS_2             9              90
  CLUS_3            12             153
  CLUS_4             3              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       14     13      6
  FBXW7 WILD-TYPE    195    138    139
D12V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            14             195
  CLUS_2            13             138
  CLUS_3             6             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11     12     10
  FBXW7 WILD-TYPE    177    125    170
D12V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11             177
  CLUS_2            12             125
  CLUS_3            10             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        3     13      8      4      1
  FBXW7 WILD-TYPE     65    126     85    110     45
D12V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             3              65
  CLUS_2            13             126
  CLUS_3             8              85
  CLUS_4             4             110
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        5     15      9
  FBXW7 WILD-TYPE    133    223     75
D12V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             133
  CLUS_2            15             223
  CLUS_3             9              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = ZNF750 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        2      7      9      1
  ZNF750 WILD-TYPE    145    123    176     41
D13V1, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              2              145
  CLUS_2              7              123
  CLUS_3              9              176
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF750 MUTATED        1      3      0      5      8      2      0
  ZNF750 WILD-TYPE     83     72     94     83     68     72     19
D13V2, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               72
  CLUS_3              0               94
  CLUS_4              5               83
  CLUS_5              8               68
  CLUS_6              2               72
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        3      0      2
  ZNF750 WILD-TYPE     64     63     78
D13V3, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               63
  CLUS_3              2               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        1      4      0
  ZNF750 WILD-TYPE     77     81     47
D13V4, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               77
  CLUS_2              4               81
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        3     13      1
  ZNF750 WILD-TYPE    136    192    157
D13V5, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3              136
  CLUS_2             13              192
  CLUS_3              1              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        3      5      3      6
  ZNF750 WILD-TYPE    173     94    162     56
D13V6, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3              173
  CLUS_2              5               94
  CLUS_3              3              162
  CLUS_4              6               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED       14      2      3
  ZNF750 WILD-TYPE    195    149    142
D13V7, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1             14              195
  CLUS_2              2              149
  CLUS_3              3              142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        4      4     11
  ZNF750 WILD-TYPE    184    133    169
D13V8, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              4              184
  CLUS_2              4              133
  CLUS_3             11              169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF750 MUTATED        3      3      6      2      5
  ZNF750 WILD-TYPE     65    136     87    112     41
D13V9, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              3              136
  CLUS_3              6               87
  CLUS_4              2              112
  CLUS_5              5               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        4     15      0
  ZNF750 WILD-TYPE    134    223     84
D13V10, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              4              134
  CLUS_2             15              223
  CLUS_3              0               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = RAC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        3      1      9      2
  RAC1 WILD-TYPE    144    129    176     40
D14V1, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            144
  CLUS_2            1            129
  CLUS_3            9            176
  CLUS_4            2             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAC1 MUTATED        4      0      2      1      1      5      2
  RAC1 WILD-TYPE     80     75     92     87     75     69     17
D14V2, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4             80
  CLUS_2            0             75
  CLUS_3            2             92
  CLUS_4            1             87
  CLUS_5            1             75
  CLUS_6            5             69
  CLUS_7            2             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        1      2      1
  RAC1 WILD-TYPE     66     61     79
D14V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2             61
  CLUS_3            1             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        2      1      1
  RAC1 WILD-TYPE     76     84     46
D14V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            1             84
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        1      4      9
  RAC1 WILD-TYPE    138    201    149
D14V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1            138
  CLUS_2            4            201
  CLUS_3            9            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        2      1      9      2
  RAC1 WILD-TYPE    174     98    156     60
D14V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            174
  CLUS_2            1             98
  CLUS_3            9            156
  CLUS_4            2             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        8      5      2
  RAC1 WILD-TYPE    201    146    143
D14V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            8            201
  CLUS_2            5            146
  CLUS_3            2            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        4      3      8
  RAC1 WILD-TYPE    184    134    172
D14V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4            184
  CLUS_2            3            134
  CLUS_3            8            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAC1 MUTATED        0      8      2      2      1
  RAC1 WILD-TYPE     68    131     91    112     45
D14V9, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            0             68
  CLUS_2            8            131
  CLUS_3            2             91
  CLUS_4            2            112
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        2      7      4
  RAC1 WILD-TYPE    136    231     80
D14V10, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            136
  CLUS_2            7            231
  CLUS_3            4             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        7      3     11      2
  EPHA2 WILD-TYPE    140    127    174     40
D15V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             7             140
  CLUS_2             3             127
  CLUS_3            11             174
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA2 MUTATED        0      5      4      0      2     11      2
  EPHA2 WILD-TYPE     84     70     90     88     74     63     17
D15V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             5              70
  CLUS_3             4              90
  CLUS_4             0              88
  CLUS_5             2              74
  CLUS_6            11              63
  CLUS_7             2              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        4      4      4
  EPHA2 WILD-TYPE     63     59     76
D15V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             4              59
  CLUS_3             4              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        5      5      2
  EPHA2 WILD-TYPE     73     80     45
D15V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              73
  CLUS_2             5              80
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        6      7     11
  EPHA2 WILD-TYPE    133    198    147
D15V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             6             133
  CLUS_2             7             198
  CLUS_3            11             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        8      3     12      1
  EPHA2 WILD-TYPE    168     96    153     61
D15V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             8             168
  CLUS_2             3              96
  CLUS_3            12             153
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        9      8      6
  EPHA2 WILD-TYPE    200    143    139
D15V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             9             200
  CLUS_2             8             143
  CLUS_3             6             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        8     10      5
  EPHA2 WILD-TYPE    180    127    175
D15V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             8             180
  CLUS_2            10             127
  CLUS_3             5             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        1      9      2      8      0
  EPHA2 WILD-TYPE     67    130     91    106     46
D15V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             9             130
  CLUS_3             2              91
  CLUS_4             8             106
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        6      9      5
  EPHA2 WILD-TYPE    132    229     79
D15V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             6             132
  CLUS_2             9             229
  CLUS_3             5              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        3      1     15      3
  HLA-A WILD-TYPE    144    129    170     39
D16V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             144
  CLUS_2             1             129
  CLUS_3            15             170
  CLUS_4             3              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-A MUTATED        2      1      2      2      4     11      0
  HLA-A WILD-TYPE     82     74     92     86     72     63     19
D16V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              74
  CLUS_3             2              92
  CLUS_4             2              86
  CLUS_5             4              72
  CLUS_6            11              63
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        0      3      2
  HLA-A WILD-TYPE     67     60     78
D16V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0              67
  CLUS_2             3              60
  CLUS_3             2              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        1      2      2
  HLA-A WILD-TYPE     77     83     45
D16V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              77
  CLUS_2             2              83
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        1      8     13
  HLA-A WILD-TYPE    138    197    145
D16V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1             138
  CLUS_2             8             197
  CLUS_3            13             145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        3      1     15      3
  HLA-A WILD-TYPE    173     98    150     59
D16V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             173
  CLUS_2             1              98
  CLUS_3            15             150
  CLUS_4             3              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        7     12      3
  HLA-A WILD-TYPE    202    139    142
D16V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             7             202
  CLUS_2            12             139
  CLUS_3             3             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        4      9      9
  HLA-A WILD-TYPE    184    128    171
D16V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4             184
  CLUS_2             9             128
  CLUS_3             9             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        3     10      2      5      2
  HLA-A WILD-TYPE     65    129     91    109     44
D16V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3              65
  CLUS_2            10             129
  CLUS_3             2              91
  CLUS_4             5             109
  CLUS_5             2              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        5     11      6
  HLA-A WILD-TYPE    133    227     78
D16V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             5             133
  CLUS_2            11             227
  CLUS_3             6              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        3      0     22      3
  HRAS WILD-TYPE    144    130    163     39
D17V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3            144
  CLUS_2            0            130
  CLUS_3           22            163
  CLUS_4            3             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HRAS MUTATED        4      2      2      1      0     19      1
  HRAS WILD-TYPE     80     73     92     87     76     55     18
D17V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4             80
  CLUS_2            2             73
  CLUS_3            2             92
  CLUS_4            1             87
  CLUS_5            0             76
  CLUS_6           19             55
  CLUS_7            1             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        0      6      2
  HRAS WILD-TYPE     67     57     78
D17V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0             67
  CLUS_2            6             57
  CLUS_3            2             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        4      2      2
  HRAS WILD-TYPE     74     83     45
D17V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4             74
  CLUS_2            2             83
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        7      4     18
  HRAS WILD-TYPE    132    201    140
D17V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            7            132
  CLUS_2            4            201
  CLUS_3           18            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        9      2     18      0
  HRAS WILD-TYPE    167     97    147     62
D17V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            9            167
  CLUS_2            2             97
  CLUS_3           18            147
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        5     18      6
  HRAS WILD-TYPE    204    133    139
D17V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            5            204
  CLUS_2           18            133
  CLUS_3            6            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED       10      4     15
  HRAS WILD-TYPE    178    133    165
D17V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           10            178
  CLUS_2            4            133
  CLUS_3           15            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        3     15      1      8      1
  HRAS WILD-TYPE     65    124     92    106     45
D17V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3             65
  CLUS_2           15            124
  CLUS_3            1             92
  CLUS_4            8            106
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        7     12      9
  HRAS WILD-TYPE    131    226     75
D17V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            7            131
  CLUS_2           12            226
  CLUS_3            9             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       20     25     40      6
  PIK3CA WILD-TYPE    127    105    145     36
D18V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20              127
  CLUS_2             25              105
  CLUS_3             40              145
  CLUS_4              6               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED       15     11     12     20     21     13      2
  PIK3CA WILD-TYPE     69     64     82     68     55     61     17
D18V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             15               69
  CLUS_2             11               64
  CLUS_3             12               82
  CLUS_4             20               68
  CLUS_5             21               55
  CLUS_6             13               61
  CLUS_7              2               17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       11     11     18
  PIK3CA WILD-TYPE     56     52     62
D18V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             11               56
  CLUS_2             11               52
  CLUS_3             18               62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       15     11     14
  PIK3CA WILD-TYPE     63     74     33
D18V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             15               63
  CLUS_2             11               74
  CLUS_3             14               33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       17     47     29
  PIK3CA WILD-TYPE    122    158    129
D18V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             17              122
  CLUS_2             47              158
  CLUS_3             29              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       26     19     33     15
  PIK3CA WILD-TYPE    150     80    132     47
D18V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             26              150
  CLUS_2             19               80
  CLUS_3             33              132
  CLUS_4             15               47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       47     32     15
  PIK3CA WILD-TYPE    162    119    130
D18V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             47              162
  CLUS_2             32              119
  CLUS_3             15              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       30     19     45
  PIK3CA WILD-TYPE    158    118    135
D18V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             30              158
  CLUS_2             19              118
  CLUS_3             45              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       13     20     22     23      7
  PIK3CA WILD-TYPE     55    119     71     91     39
D18V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13               55
  CLUS_2             20              119
  CLUS_3             22               71
  CLUS_4             23               91
  CLUS_5              7               39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       21     53     11
  PIK3CA WILD-TYPE    117    185     73
D18V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             21              117
  CLUS_2             53              185
  CLUS_3             11               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = EP300 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        9      8     17      5
  EP300 WILD-TYPE    138    122    168     37
D19V1, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             9             138
  CLUS_2             8             122
  CLUS_3            17             168
  CLUS_4             5              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EP300 MUTATED        5      3      2      9      8     11      1
  EP300 WILD-TYPE     79     72     92     79     68     63     18
D19V2, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             3              72
  CLUS_3             2              92
  CLUS_4             9              79
  CLUS_5             8              68
  CLUS_6            11              63
  CLUS_7             1              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        4      6      3
  EP300 WILD-TYPE     63     57     77
D19V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             6              57
  CLUS_3             3              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        7      6      0
  EP300 WILD-TYPE     71     79     47
D19V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7              71
  CLUS_2             6              79
  CLUS_3             0              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        9      9     21
  EP300 WILD-TYPE    130    196    137
D19V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             9             130
  CLUS_2             9             196
  CLUS_3            21             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       13      3     19      4
  EP300 WILD-TYPE    163     96    146     58
D19V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            13             163
  CLUS_2             3              96
  CLUS_3            19             146
  CLUS_4             4              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       14     14      9
  EP300 WILD-TYPE    195    137    136
D19V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            14             195
  CLUS_2            14             137
  CLUS_3             9             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       12      7     18
  EP300 WILD-TYPE    176    130    162
D19V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            12             176
  CLUS_2             7             130
  CLUS_3            18             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP300 MUTATED        1     14      3     11      5
  EP300 WILD-TYPE     67    125     90    103     41
D19V9, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             1              67
  CLUS_2            14             125
  CLUS_3             3              90
  CLUS_4            11             103
  CLUS_5             5              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       10     18      6
  EP300 WILD-TYPE    128    220     78
D19V10, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10             128
  CLUS_2            18             220
  CLUS_3             6              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      5      9      1
  RB1 WILD-TYPE    144    125    176     41
D20V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           144
  CLUS_2           5           125
  CLUS_3           9           176
  CLUS_4           1            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED        1      3      2      3      6      2      1
  RB1 WILD-TYPE     83     72     92     85     70     72     18
D20V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            83
  CLUS_2           3            72
  CLUS_3           2            92
  CLUS_4           3            85
  CLUS_5           6            70
  CLUS_6           2            72
  CLUS_7           1            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      0      3
  RB1 WILD-TYPE     66     63     77
D20V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            66
  CLUS_2           0            63
  CLUS_3           3            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      3      1
  RB1 WILD-TYPE     78     82     46
D20V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            78
  CLUS_2           3            82
  CLUS_3           1            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1     12      5
  RB1 WILD-TYPE    138    193    153
D20V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1           138
  CLUS_2          12           193
  CLUS_3           5           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        5      6      4      3
  RB1 WILD-TYPE    171     93    161     59
D20V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5           171
  CLUS_2           6            93
  CLUS_3           4           161
  CLUS_4           3            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       11      3      3
  RB1 WILD-TYPE    198    148    142
D20V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          11           198
  CLUS_2           3           148
  CLUS_3           3           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        4      6      7
  RB1 WILD-TYPE    184    131    173
D20V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4           184
  CLUS_2           6           131
  CLUS_3           7           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        1      4      3      4      4
  RB1 WILD-TYPE     67    135     90    110     42
D20V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            67
  CLUS_2           4           135
  CLUS_3           3            90
  CLUS_4           4           110
  CLUS_5           4            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        3     10      3
  RB1 WILD-TYPE    135    228     81
D20V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           135
  CLUS_2          10           228
  CLUS_3           3            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        5      3      4      2
  PTEN WILD-TYPE    142    127    181     40
D21V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5            142
  CLUS_2            3            127
  CLUS_3            4            181
  CLUS_4            2             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        1      3      1      3      4      1      1
  PTEN WILD-TYPE     83     72     93     85     72     73     18
D21V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             72
  CLUS_3            1             93
  CLUS_4            3             85
  CLUS_5            4             72
  CLUS_6            1             73
  CLUS_7            1             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        3      0      1
  PTEN WILD-TYPE     64     63     79
D21V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             64
  CLUS_2            0             63
  CLUS_3            1             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      1      1
  PTEN WILD-TYPE     76     84     46
D21V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             76
  CLUS_2            1             84
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2     10      2
  PTEN WILD-TYPE    137    195    156
D21V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            137
  CLUS_2           10            195
  CLUS_3            2            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      4      5      3
  PTEN WILD-TYPE    174     95    160     59
D21V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            174
  CLUS_2            4             95
  CLUS_3            5            160
  CLUS_4            3             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        8      3      2
  PTEN WILD-TYPE    201    148    143
D21V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            8            201
  CLUS_2            3            148
  CLUS_3            2            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      5      6
  PTEN WILD-TYPE    186    132    174
D21V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            186
  CLUS_2            5            132
  CLUS_3            6            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        1      2      6      1      1
  PTEN WILD-TYPE     67    137     87    113     45
D21V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             67
  CLUS_2            2            137
  CLUS_3            6             87
  CLUS_4            1            113
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      9      0
  PTEN WILD-TYPE    136    229     84
D21V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            136
  CLUS_2            9            229
  CLUS_3            0             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = RASA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        8      5      3      0
  RASA1 WILD-TYPE    139    125    182     42
D22V1, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             8             139
  CLUS_2             5             125
  CLUS_3             3             182
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASA1 MUTATED        4      0      6      5      0      2      0
  RASA1 WILD-TYPE     80     75     88     83     76     72     19
D22V2, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4              80
  CLUS_2             0              75
  CLUS_3             6              88
  CLUS_4             5              83
  CLUS_5             0              76
  CLUS_6             2              72
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        5      2      3
  RASA1 WILD-TYPE     62     61     77
D22V3, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             2              61
  CLUS_3             3              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        5      3      2
  RASA1 WILD-TYPE     73     82     45
D22V4, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5              73
  CLUS_2             3              82
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        7      5      5
  RASA1 WILD-TYPE    132    200    153
D22V5, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             132
  CLUS_2             5             200
  CLUS_3             5             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        7      4      6      0
  RASA1 WILD-TYPE    169     95    159     62
D22V6, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             169
  CLUS_2             4              95
  CLUS_3             6             159
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        6      4      7
  RASA1 WILD-TYPE    203    147    138
D22V7, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             6             203
  CLUS_2             4             147
  CLUS_3             7             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        9      4      4
  RASA1 WILD-TYPE    179    133    176
D22V8, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             9             179
  CLUS_2             4             133
  CLUS_3             4             176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        4      3      4      3      0
  RASA1 WILD-TYPE     64    136     89    111     46
D22V9, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             3             136
  CLUS_3             4              89
  CLUS_4             3             111
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        7      4      3
  RASA1 WILD-TYPE    131    234     81
D22V10, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             131
  CLUS_2             4             234
  CLUS_3             3              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = MAPK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        0      2      6      1
  MAPK1 WILD-TYPE    147    128    179     41
D23V1, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             0             147
  CLUS_2             2             128
  CLUS_3             6             179
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK1 MUTATED        2      1      0      1      3      2      0
  MAPK1 WILD-TYPE     82     74     94     87     73     72     19
D23V2, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              74
  CLUS_3             0              94
  CLUS_4             1              87
  CLUS_5             3              73
  CLUS_6             2              72
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        2      1      1
  MAPK1 WILD-TYPE     65     62     79
D23V3, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             1              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        2      1      1
  MAPK1 WILD-TYPE     76     84     46
D23V4, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              76
  CLUS_2             1              84
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        1      3      4
  MAPK1 WILD-TYPE    138    202    154
D23V5, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             138
  CLUS_2             3             202
  CLUS_3             4             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        2      2      3      1
  MAPK1 WILD-TYPE    174     97    162     61
D23V6, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             2              97
  CLUS_3             3             162
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        4      4      1
  MAPK1 WILD-TYPE    205    147    144
D23V7, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             4             205
  CLUS_2             4             147
  CLUS_3             1             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        3      2      4
  MAPK1 WILD-TYPE    185    135    176
D23V8, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             3             185
  CLUS_2             2             135
  CLUS_3             4             176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK1 MUTATED        1      3      2      2      1
  MAPK1 WILD-TYPE     67    136     91    112     45
D23V9, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             3             136
  CLUS_3             2              91
  CLUS_4             2             112
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        2      6      1
  MAPK1 WILD-TYPE    136    232     83
D23V10, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2             136
  CLUS_2             6             232
  CLUS_3             1              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = NAP1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        4      2      1      0
  NAP1L2 WILD-TYPE    143    128    184     42
D24V1, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              4              143
  CLUS_2              2              128
  CLUS_3              1              184
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L2 MUTATED        0      1      3      2      0      1      0
  NAP1L2 WILD-TYPE     84     74     91     86     76     73     19
D24V2, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               74
  CLUS_3              3               91
  CLUS_4              2               86
  CLUS_5              0               76
  CLUS_6              1               73
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        0      0      2
  NAP1L2 WILD-TYPE     67     63     78
D24V3, multiclass
[1] "Remove cluster labels:" "NAP1L2 MUTATED"        
clus
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               2              208 
      TCGA-BA-4074       TCGA-BA-4078       TCGA-BA-5149       TCGA-BA-5151 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-BA-5152       TCGA-BA-5153       TCGA-BA-5555       TCGA-BA-5556 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-BA-5557       TCGA-BA-5559       TCGA-BA-6869       TCGA-BA-6870 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-BA-6871       TCGA-BA-6872       TCGA-BA-6873       TCGA-BB-4217 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4723       TCGA-CN-4725       TCGA-CN-4726       TCGA-CN-4727 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4728       TCGA-CN-4729       TCGA-CN-4730       TCGA-CN-4731 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4733       TCGA-CN-4734       TCGA-CN-4735       TCGA-CN-4736 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4737       TCGA-CN-4738       TCGA-CN-4739       TCGA-CN-4740 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4741       TCGA-CN-4742       TCGA-CN-5355       TCGA-CN-5356 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5358       TCGA-CN-5359       TCGA-CN-5360       TCGA-CN-5361 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5363       TCGA-CN-5364       TCGA-CN-5365       TCGA-CN-5366 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5367       TCGA-CN-5369       TCGA-CN-5370       TCGA-CN-5373 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5374       TCGA-CN-6010       TCGA-CN-6011       TCGA-CN-6012 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6013       TCGA-CN-6016       TCGA-CN-6017       TCGA-CN-6018 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6019       TCGA-CN-6020       TCGA-CN-6021       TCGA-CN-6022 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6023       TCGA-CN-6024       TCGA-CN-6988       TCGA-CN-6989 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6992       TCGA-CN-6994       TCGA-CN-6995       TCGA-CN-6996 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6997       TCGA-CN-6998       TCGA-CQ-5323       TCGA-CQ-5324 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-5325       TCGA-CQ-5326       TCGA-CQ-5327       TCGA-CQ-5329 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-5330       TCGA-CQ-5331       TCGA-CQ-5332       TCGA-CQ-5334 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-6219       TCGA-CQ-6220       TCGA-CQ-6221       TCGA-CQ-6222 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-6224       TCGA-CQ-6225       TCGA-CQ-6227       TCGA-CQ-6228 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-6229       TCGA-CQ-7065       TCGA-CQ-7068       TCGA-CV-5430 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5431       TCGA-CV-5432       TCGA-CV-5434       TCGA-CV-5439 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5440       TCGA-CV-5441       TCGA-CV-5442       TCGA-CV-5443 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5444       TCGA-CV-5966       TCGA-CV-5970       TCGA-CV-5971 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5973       TCGA-CV-5976       TCGA-CV-5977       TCGA-CV-5978 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5979       TCGA-CV-6003       TCGA-CV-6433       TCGA-CV-6436 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6441       TCGA-CV-6933       TCGA-CV-6934       TCGA-CV-6935 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6936       TCGA-CV-6937       TCGA-CV-6938       TCGA-CV-6939 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6940       TCGA-CV-6941       TCGA-CV-6942       TCGA-CV-6943 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6945       TCGA-CV-6948       TCGA-CV-6950       TCGA-CV-6951 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6952       TCGA-CV-6953       TCGA-CV-6954       TCGA-CV-6955 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6956       TCGA-CV-6959       TCGA-CV-6960       TCGA-CV-6961 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6962       TCGA-CV-7089       TCGA-CV-7090       TCGA-CV-7091 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7095       TCGA-CV-7097       TCGA-CV-7099       TCGA-CV-7100 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7101       TCGA-CV-7102       TCGA-CV-7103       TCGA-CV-7104 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7177       TCGA-CV-7178       TCGA-CV-7180       TCGA-CV-7183 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7235       TCGA-CV-7236       TCGA-CV-7238       TCGA-CV-7242 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7243       TCGA-CV-7245       TCGA-CV-7247       TCGA-CV-7248 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7250       TCGA-CV-7252       TCGA-CV-7253       TCGA-CV-7254 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7255       TCGA-CV-7261       TCGA-CV-7263       TCGA-CV-7406 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7407       TCGA-CV-7410       TCGA-CV-7411       TCGA-CV-7413 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7414       TCGA-CV-7415       TCGA-CV-7416       TCGA-CV-7418 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7421       TCGA-CV-7422       TCGA-CV-7423       TCGA-CV-7424 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7425       TCGA-CV-7427       TCGA-CV-7429       TCGA-CV-7430 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7432       TCGA-CV-7433       TCGA-CV-7434       TCGA-CV-7435 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7437       TCGA-CV-7438       TCGA-CV-7440       TCGA-CV-7446 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7568       TCGA-CX-7085       TCGA-CX-7086       TCGA-CX-7219 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D6-6515       TCGA-D6-6516       TCGA-D6-6517       TCGA-D6-6823 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D6-6824       TCGA-D6-6825       TCGA-D6-6826       TCGA-D6-6827 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DQ-7591       TCGA-DQ-7592       TCGA-IQ-7630       TCGA-IQ-7632 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        0      1      1
  NAP1L2 WILD-TYPE     78     84     46
D24V4, multiclass
[1] "Remove cluster labels:" "NAP1L2 MUTATED"        
clus
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               2              208 
      TCGA-BA-4074       TCGA-BA-4078       TCGA-BA-5149       TCGA-BA-5151 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-BA-5152       TCGA-BA-5153       TCGA-BA-5555       TCGA-BA-5556 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-BA-5557       TCGA-BA-5559       TCGA-BA-6869       TCGA-BA-6870 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-BA-6871       TCGA-BA-6872       TCGA-BA-6873       TCGA-BB-4217 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4723       TCGA-CN-4725       TCGA-CN-4726       TCGA-CN-4727 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4728       TCGA-CN-4729       TCGA-CN-4730       TCGA-CN-4731 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4733       TCGA-CN-4734       TCGA-CN-4735       TCGA-CN-4736 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4737       TCGA-CN-4738       TCGA-CN-4739       TCGA-CN-4740 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-4741       TCGA-CN-4742       TCGA-CN-5355       TCGA-CN-5356 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5358       TCGA-CN-5359       TCGA-CN-5360       TCGA-CN-5361 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5363       TCGA-CN-5364       TCGA-CN-5365       TCGA-CN-5366 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5367       TCGA-CN-5369       TCGA-CN-5370       TCGA-CN-5373 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-5374       TCGA-CN-6010       TCGA-CN-6011       TCGA-CN-6012 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6013       TCGA-CN-6016       TCGA-CN-6017       TCGA-CN-6018 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6019       TCGA-CN-6020       TCGA-CN-6021       TCGA-CN-6022 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6023       TCGA-CN-6024       TCGA-CN-6988       TCGA-CN-6989 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6992       TCGA-CN-6994       TCGA-CN-6995       TCGA-CN-6996 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CN-6997       TCGA-CN-6998       TCGA-CQ-5323       TCGA-CQ-5324 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-5325       TCGA-CQ-5326       TCGA-CQ-5327       TCGA-CQ-5329 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-5330       TCGA-CQ-5331       TCGA-CQ-5332       TCGA-CQ-5334 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-6219       TCGA-CQ-6220       TCGA-CQ-6221       TCGA-CQ-6222 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-6224       TCGA-CQ-6225       TCGA-CQ-6227       TCGA-CQ-6228 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CQ-6229       TCGA-CQ-7065       TCGA-CQ-7068       TCGA-CV-5430 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5431       TCGA-CV-5432       TCGA-CV-5434       TCGA-CV-5439 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5440       TCGA-CV-5441       TCGA-CV-5442       TCGA-CV-5443 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5444       TCGA-CV-5966       TCGA-CV-5970       TCGA-CV-5971 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5973       TCGA-CV-5976       TCGA-CV-5977       TCGA-CV-5978 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-5979       TCGA-CV-6003       TCGA-CV-6433       TCGA-CV-6436 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6441       TCGA-CV-6933       TCGA-CV-6934       TCGA-CV-6935 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6936       TCGA-CV-6937       TCGA-CV-6938       TCGA-CV-6939 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6940       TCGA-CV-6941       TCGA-CV-6942       TCGA-CV-6943 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6945       TCGA-CV-6948       TCGA-CV-6950       TCGA-CV-6951 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6952       TCGA-CV-6953       TCGA-CV-6954       TCGA-CV-6955 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6956       TCGA-CV-6959       TCGA-CV-6960       TCGA-CV-6961 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-6962       TCGA-CV-7089       TCGA-CV-7090       TCGA-CV-7091 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7095       TCGA-CV-7097       TCGA-CV-7099       TCGA-CV-7100 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7101       TCGA-CV-7102       TCGA-CV-7103       TCGA-CV-7104 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7177       TCGA-CV-7178       TCGA-CV-7180       TCGA-CV-7183 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7235       TCGA-CV-7236       TCGA-CV-7238       TCGA-CV-7242 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7243       TCGA-CV-7245       TCGA-CV-7247       TCGA-CV-7248 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7250       TCGA-CV-7252       TCGA-CV-7253       TCGA-CV-7254 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7255       TCGA-CV-7261       TCGA-CV-7263       TCGA-CV-7406 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7407       TCGA-CV-7410       TCGA-CV-7411       TCGA-CV-7413 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7414       TCGA-CV-7415       TCGA-CV-7416       TCGA-CV-7418 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7421       TCGA-CV-7422       TCGA-CV-7423       TCGA-CV-7424 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7425       TCGA-CV-7427       TCGA-CV-7429       TCGA-CV-7430 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7432       TCGA-CV-7433       TCGA-CV-7434       TCGA-CV-7435 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7437       TCGA-CV-7438       TCGA-CV-7440       TCGA-CV-7446 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CV-7568       TCGA-CX-7085       TCGA-CX-7086       TCGA-CX-7219 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D6-6515       TCGA-D6-6516       TCGA-D6-6517       TCGA-D6-6823 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D6-6824       TCGA-D6-6825       TCGA-D6-6826       TCGA-D6-6827 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DQ-7591       TCGA-DQ-7592       TCGA-IQ-7630       TCGA-IQ-7632 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        1      3      2
  NAP1L2 WILD-TYPE    138    202    156
D24V5, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              138
  CLUS_2              3              202
  CLUS_3              2              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      2      3      0
  NAP1L2 WILD-TYPE    175     97    162     62
D24V6, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              175
  CLUS_2              2               97
  CLUS_3              3              162
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        4      2      1
  NAP1L2 WILD-TYPE    205    149    144
D24V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              4              205
  CLUS_2              2              149
  CLUS_3              1              144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      2      3
  NAP1L2 WILD-TYPE    186    135    177
D24V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              186
  CLUS_2              2              135
  CLUS_3              3              177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        1      3      2      1      0
  NAP1L2 WILD-TYPE     67    136     91    113     46
D24V9, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               67
  CLUS_2              3              136
  CLUS_3              2               91
  CLUS_4              1              113
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        1      4      2
  NAP1L2 WILD-TYPE    137    234     82
D24V10, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              137
  CLUS_2              4              234
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = KEAP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KEAP1 MUTATED        4     10      8      0
  KEAP1 WILD-TYPE    143    120    177     42
D25V1, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4             143
  CLUS_2            10             120
  CLUS_3             8             177
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KEAP1 MUTATED        3      5      2      8      0      4      0
  KEAP1 WILD-TYPE     81     70     92     80     76     70     19
D25V2, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             5              70
  CLUS_3             2              92
  CLUS_4             8              80
  CLUS_5             0              76
  CLUS_6             4              70
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        3      2      4
  KEAP1 WILD-TYPE     64     61     76
D25V3, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             4              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        4      4      1
  KEAP1 WILD-TYPE     74     81     46
D25V4, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4              74
  CLUS_2             4              81
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        3     14      5
  KEAP1 WILD-TYPE    136    191    153
D25V5, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3             136
  CLUS_2            14             191
  CLUS_3             5             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KEAP1 MUTATED        3     11      8      0
  KEAP1 WILD-TYPE    173     88    157     62
D25V6, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3             173
  CLUS_2            11              88
  CLUS_3             8             157
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED       13      5      4
  KEAP1 WILD-TYPE    196    146    141
D25V7, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            13             196
  CLUS_2             5             146
  CLUS_3             4             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        4     11      7
  KEAP1 WILD-TYPE    184    126    173
D25V8, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4             184
  CLUS_2            11             126
  CLUS_3             7             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KEAP1 MUTATED        4      6      6      2      1
  KEAP1 WILD-TYPE     64    133     87    112     45
D25V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             6             133
  CLUS_3             6              87
  CLUS_4             2             112
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        3     15      1
  KEAP1 WILD-TYPE    135    223     83
D25V10, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3             135
  CLUS_2            15             223
  CLUS_3             1              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        4      8      2      3
  KDM6A WILD-TYPE    143    122    183     39
D26V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             4             143
  CLUS_2             8             122
  CLUS_3             2             183
  CLUS_4             3              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6A MUTATED        1      4      3      3      2      3      1
  KDM6A WILD-TYPE     83     71     91     85     74     71     18
D26V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              71
  CLUS_3             3              91
  CLUS_4             3              85
  CLUS_5             2              74
  CLUS_6             3              71
  CLUS_7             1              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        3      1      1
  KDM6A WILD-TYPE     64     62     79
D26V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              62
  CLUS_3             1              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        2      2      1
  KDM6A WILD-TYPE     76     83     46
D26V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              76
  CLUS_2             2              83
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        4      6      6
  KDM6A WILD-TYPE    135    199    152
D26V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             4             135
  CLUS_2             6             199
  CLUS_3             6             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        5      6      4      1
  KDM6A WILD-TYPE    171     93    161     61
D26V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5             171
  CLUS_2             6              93
  CLUS_3             4             161
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        7      6      4
  KDM6A WILD-TYPE    202    145    141
D26V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             7             202
  CLUS_2             6             145
  CLUS_3             4             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        7      5      5
  KDM6A WILD-TYPE    181    132    175
D26V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             7             181
  CLUS_2             5             132
  CLUS_3             5             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      7      1      5      1
  KDM6A WILD-TYPE     66    132     92    109     45
D26V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              66
  CLUS_2             7             132
  CLUS_3             1              92
  CLUS_4             5             109
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        3      9      4
  KDM6A WILD-TYPE    135    229     80
D26V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3             135
  CLUS_2             9             229
  CLUS_3             4              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        2      1      4      3
  RHOA WILD-TYPE    145    129    181     39
D27V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2            145
  CLUS_2            1            129
  CLUS_3            4            181
  CLUS_4            3             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHOA MUTATED        2      3      3      0      1      1      0
  RHOA WILD-TYPE     82     72     91     88     75     73     19
D27V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             82
  CLUS_2            3             72
  CLUS_3            3             91
  CLUS_4            0             88
  CLUS_5            1             75
  CLUS_6            1             73
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        0      0      3
  RHOA WILD-TYPE     67     63     77
D27V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             67
  CLUS_2            0             63
  CLUS_3            3             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        0      3      0
  RHOA WILD-TYPE     78     82     47
D27V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             78
  CLUS_2            3             82
  CLUS_3            0             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3      4      3
  RHOA WILD-TYPE    136    201    155
D27V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            136
  CLUS_2            4            201
  CLUS_3            3            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        4      2      3      1
  RHOA WILD-TYPE    172     97    162     61
D27V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            172
  CLUS_2            2             97
  CLUS_3            3            162
  CLUS_4            1             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3      4      3
  RHOA WILD-TYPE    206    147    142
D27V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            206
  CLUS_2            4            147
  CLUS_3            3            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      4      2
  RHOA WILD-TYPE    184    133    178
D27V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            184
  CLUS_2            4            133
  CLUS_3            2            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        3      2      2      2      1
  RHOA WILD-TYPE     65    137     91    112     45
D27V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             65
  CLUS_2            2            137
  CLUS_3            2             91
  CLUS_4            2            112
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      4      2
  RHOA WILD-TYPE    134    234     82
D27V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            134
  CLUS_2            4            234
  CLUS_3            2             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = CREBBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        3     12     15      4
  CREBBP WILD-TYPE    144    118    170     38
D28V1, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              3              144
  CLUS_2             12              118
  CLUS_3             15              170
  CLUS_4              4               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREBBP MUTATED        5      8      4      7      3      7      1
  CREBBP WILD-TYPE     79     67     90     81     73     67     18
D28V2, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               79
  CLUS_2              8               67
  CLUS_3              4               90
  CLUS_4              7               81
  CLUS_5              3               73
  CLUS_6              7               67
  CLUS_7              1               18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        4      3      5
  CREBBP WILD-TYPE     63     60     75
D28V3, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              4               63
  CLUS_2              3               60
  CLUS_3              5               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        5      5      2
  CREBBP WILD-TYPE     73     80     45
D28V4, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               73
  CLUS_2              5               80
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        6     20      9
  CREBBP WILD-TYPE    133    185    149
D28V5, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6              133
  CLUS_2             20              185
  CLUS_3              9              149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        7     10     15      3
  CREBBP WILD-TYPE    169     89    150     59
D28V6, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7              169
  CLUS_2             10               89
  CLUS_3             15              150
  CLUS_4              3               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       17     11      7
  CREBBP WILD-TYPE    192    140    138
D28V7, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             17              192
  CLUS_2             11              140
  CLUS_3              7              138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        8     16     11
  CREBBP WILD-TYPE    180    121    169
D28V8, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              8              180
  CLUS_2             16              121
  CLUS_3             11              169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        6     10     10      2      4
  CREBBP WILD-TYPE     62    129     83    112     42
D28V9, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               62
  CLUS_2             10              129
  CLUS_3             10               83
  CLUS_4              2              112
  CLUS_5              4               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        5     19      8
  CREBBP WILD-TYPE    133    219     76
D28V10, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5              133
  CLUS_2             19              219
  CLUS_3              8               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        3      3      2      0
  NUDT11 WILD-TYPE    144    127    183     42
D29V1, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              144
  CLUS_2              3              127
  CLUS_3              2              183
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        0      3      1      1      1      2      0
  NUDT11 WILD-TYPE     84     72     93     87     75     72     19
D29V2, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               72
  CLUS_3              1               93
  CLUS_4              1               87
  CLUS_5              1               75
  CLUS_6              2               72
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        0      4      1
  NUDT11 WILD-TYPE     67     59     79
D29V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              4               59
  CLUS_3              1               79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        3      1      1
  NUDT11 WILD-TYPE     75     84     46
D29V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              1               84
  CLUS_3              1               46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      4      2
  NUDT11 WILD-TYPE    137    201    156
D29V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              137
  CLUS_2              4              201
  CLUS_3              2              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        2      3      2      1
  NUDT11 WILD-TYPE    174     96    163     61
D29V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              174
  CLUS_2              3               96
  CLUS_3              2              163
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      4      2
  NUDT11 WILD-TYPE    207    147    143
D29V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              207
  CLUS_2              4              147
  CLUS_3              2              143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      2      4
  NUDT11 WILD-TYPE    186    135    176
D29V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              186
  CLUS_2              2              135
  CLUS_3              4              176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      0      2      2      0
  NUDT11 WILD-TYPE     66    139     91    112     46
D29V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0              139
  CLUS_3              2               91
  CLUS_4              2              112
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      4      0
  NUDT11 WILD-TYPE    136    234     84
D29V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              136
  CLUS_2              4              234
  CLUS_3              0               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      1      1      0
  EMG1 WILD-TYPE    145    129    184     42
D30V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            145
  CLUS_2            1            129
  CLUS_3            1            184
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        1      0      1      1      0      0      1
  EMG1 WILD-TYPE     83     75     93     87     76     74     18
D30V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             75
  CLUS_3            1             93
  CLUS_4            1             87
  CLUS_5            0             76
  CLUS_6            0             74
  CLUS_7            1             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      2      0
  EMG1 WILD-TYPE     66     61     80
D30V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2             61
  CLUS_3            0             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      0
  EMG1 WILD-TYPE     76     84     47
D30V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            1             84
  CLUS_3            0             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      0      3
  EMG1 WILD-TYPE    138    205    155
D30V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            138
  CLUS_2            0            205
  CLUS_3            3            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      0      2      0
  EMG1 WILD-TYPE    174     99    163     62
D30V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            174
  CLUS_2            0             99
  CLUS_3            2            163
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      1      2
  EMG1 WILD-TYPE    208    150    143
D30V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            208
  CLUS_2            1            150
  CLUS_3            2            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      1
  EMG1 WILD-TYPE    186    136    179
D30V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            186
  CLUS_2            1            136
  CLUS_3            1            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      0      0      2      0
  EMG1 WILD-TYPE     67    139     93    112     46
D30V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            0            139
  CLUS_3            0             93
  CLUS_4            2            112
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      0
  EMG1 WILD-TYPE    136    237     84
D30V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            136
  CLUS_2            1            237
  CLUS_3            0             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        6      2      3      1
  SMAD4 WILD-TYPE    141    128    182     41
D31V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6             141
  CLUS_2             2             128
  CLUS_3             3             182
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD4 MUTATED        1      1      3      2      2      3      1
  SMAD4 WILD-TYPE     83     74     91     86     74     71     18
D31V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              74
  CLUS_3             3              91
  CLUS_4             2              86
  CLUS_5             2              74
  CLUS_6             3              71
  CLUS_7             1              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        4      1      1
  SMAD4 WILD-TYPE     63     62     79
D31V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             1              62
  CLUS_3             1              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        3      2      1
  SMAD4 WILD-TYPE     75     83     46
D31V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              75
  CLUS_2             2              83
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        6      3      4
  SMAD4 WILD-TYPE    133    202    154
D31V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6             133
  CLUS_2             3             202
  CLUS_3             4             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        7      1      4      1
  SMAD4 WILD-TYPE    169     98    161     61
D31V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7             169
  CLUS_2             1              98
  CLUS_3             4             161
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        7      0      6
  SMAD4 WILD-TYPE    202    151    139
D31V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7             202
  CLUS_2             0             151
  CLUS_3             6             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        7      3      3
  SMAD4 WILD-TYPE    181    134    177
D31V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7             181
  CLUS_2             3             134
  CLUS_3             3             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        3      4      1      2      1
  SMAD4 WILD-TYPE     65    135     92    112     45
D31V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             4             135
  CLUS_3             1              92
  CLUS_4             2             112
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        5      3      3
  SMAD4 WILD-TYPE    133    235     81
D31V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5             133
  CLUS_2             3             235
  CLUS_3             3              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = CUL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        3      9      2      0
  CUL3 WILD-TYPE    144    121    183     42
D32V1, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            3            144
  CLUS_2            9            121
  CLUS_3            2            183
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL3 MUTATED        1      5      1      7      0      0      0
  CUL3 WILD-TYPE     83     70     93     81     76     74     19
D32V2, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             70
  CLUS_3            1             93
  CLUS_4            7             81
  CLUS_5            0             76
  CLUS_6            0             74
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        4      3      1
  CUL3 WILD-TYPE     63     60     79
D32V3, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            4             63
  CLUS_2            3             60
  CLUS_3            1             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        2      4      2
  CUL3 WILD-TYPE     76     81     45
D32V4, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            4             81
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        4      8      2
  CUL3 WILD-TYPE    135    197    156
D32V5, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            4            135
  CLUS_2            8            197
  CLUS_3            2            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        5      7      2      0
  CUL3 WILD-TYPE    171     92    163     62
D32V6, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            171
  CLUS_2            7             92
  CLUS_3            2            163
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        9      2      3
  CUL3 WILD-TYPE    200    149    142
D32V7, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            9            200
  CLUS_2            2            149
  CLUS_3            3            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        6      4      4
  CUL3 WILD-TYPE    182    133    176
D32V8, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            6            182
  CLUS_2            4            133
  CLUS_3            4            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL3 MUTATED        1      2      8      0      0
  CUL3 WILD-TYPE     67    137     85    114     46
D32V9, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            2            137
  CLUS_3            8             85
  CLUS_4            0            114
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        4      7      0
  CUL3 WILD-TYPE    134    231     84
D32V10, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            4            134
  CLUS_2            7            231
  CLUS_3            0             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = TIGD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD4 MUTATED        1      3      2      1
  TIGD4 WILD-TYPE    146    127    183     41
D33V1, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             146
  CLUS_2             3             127
  CLUS_3             2             183
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TIGD4 MUTATED        1      1      0      2      1      2      0
  TIGD4 WILD-TYPE     83     74     94     86     75     72     19
D33V2, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              74
  CLUS_3             0              94
  CLUS_4             2              86
  CLUS_5             1              75
  CLUS_6             2              72
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      1      2
  TIGD4 WILD-TYPE     66     62     78
D33V3, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1              62
  CLUS_3             2              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        2      1      1
  TIGD4 WILD-TYPE     76     84     46
D33V4, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             2              76
  CLUS_2             1              84
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      4      2
  TIGD4 WILD-TYPE    138    201    156
D33V5, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             138
  CLUS_2             4             201
  CLUS_3             2             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD4 MUTATED        1      2      4      0
  TIGD4 WILD-TYPE    175     97    161     62
D33V6, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             2              97
  CLUS_3             4             161
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        3      3      1
  TIGD4 WILD-TYPE    206    148    144
D33V7, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             3             206
  CLUS_2             3             148
  CLUS_3             1             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      3      3
  TIGD4 WILD-TYPE    187    134    177
D33V8, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             187
  CLUS_2             3             134
  CLUS_3             3             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD4 MUTATED        1      3      1      2      0
  TIGD4 WILD-TYPE     67    136     92    112     46
D33V9, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             3             136
  CLUS_3             1              92
  CLUS_4             2             112
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      5      1
  TIGD4 WILD-TYPE    137    233     83
D33V10, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             137
  CLUS_2             5             233
  CLUS_3             1              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = MYH9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH9 MUTATED        8      1     13      0
  MYH9 WILD-TYPE    139    129    172     42
D34V1, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            8            139
  CLUS_2            1            129
  CLUS_3           13            172
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH9 MUTATED        3      2      2      2      5      7      1
  MYH9 WILD-TYPE     81     73     92     86     71     67     18
D34V2, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            2             73
  CLUS_3            2             92
  CLUS_4            2             86
  CLUS_5            5             71
  CLUS_6            7             67
  CLUS_7            1             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        5      1      2
  MYH9 WILD-TYPE     62     62     78
D34V3, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            5             62
  CLUS_2            1             62
  CLUS_3            2             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        3      2      3
  MYH9 WILD-TYPE     75     83     44
D34V4, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            3             75
  CLUS_2            2             83
  CLUS_3            3             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        8      7      7
  MYH9 WILD-TYPE    131    198    151
D34V5, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            8            131
  CLUS_2            7            198
  CLUS_3            7            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH9 MUTATED       10      3      6      3
  MYH9 WILD-TYPE    166     96    159     59
D34V6, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1           10            166
  CLUS_2            3             96
  CLUS_3            6            159
  CLUS_4            3             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        8      6      8
  MYH9 WILD-TYPE    201    145    137
D34V7, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            8            201
  CLUS_2            6            145
  CLUS_3            8            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED       11      4      7
  MYH9 WILD-TYPE    177    133    173
D34V8, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1           11            177
  CLUS_2            4            133
  CLUS_3            7            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH9 MUTATED        4      8      3      4      2
  MYH9 WILD-TYPE     64    131     90    110     44
D34V9, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            4             64
  CLUS_2            8            131
  CLUS_3            3             90
  CLUS_4            4            110
  CLUS_5            2             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        5     10      6
  MYH9 WILD-TYPE    133    228     78
D34V10, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            5            133
  CLUS_2           10            228
  CLUS_3            6             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = C3ORF59 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF59 MUTATED        2      2      6      1
  C3ORF59 WILD-TYPE    145    128    179     41
D35V1, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2               145
  CLUS_2               2               128
  CLUS_3               6               179
  CLUS_4               1                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C3ORF59 MUTATED        0      1      1      2      2      4      1
  C3ORF59 WILD-TYPE     84     74     93     86     74     70     18
D35V2, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                74
  CLUS_3               1                93
  CLUS_4               2                86
  CLUS_5               2                74
  CLUS_6               4                70
  CLUS_7               1                18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        2      0      0
  C3ORF59 WILD-TYPE     65     63     80
D35V3, multiclass
[1] "Remove cluster labels:" "C3ORF59 MUTATED"       
clus
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                2               208 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5361 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6218        TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6222        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243        TCGA-CV-7245 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7263        TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7423        TCGA-CV-7424 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CV-7446 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7568        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-IQ-7630        TCGA-IQ-7632 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        2      0      0
  C3ORF59 WILD-TYPE     76     85     47
D35V4, multiclass
[1] "Remove cluster labels:" "C3ORF59 MUTATED"       
clus
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                2               208 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5361 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6218        TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6222        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243        TCGA-CV-7245 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7263        TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7423        TCGA-CV-7424 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CV-7446 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7568        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-IQ-7630        TCGA-IQ-7632 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        2      5      4
  C3ORF59 WILD-TYPE    137    200    154
D35V5, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2               137
  CLUS_2               5               200
  CLUS_3               4               154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF59 MUTATED        4      1      6      0
  C3ORF59 WILD-TYPE    172     98    159     62
D35V6, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               4               172
  CLUS_2               1                98
  CLUS_3               6               159
  CLUS_4               0                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        5      4      2
  C3ORF59 WILD-TYPE    204    147    143
D35V7, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               5               204
  CLUS_2               4               147
  CLUS_3               2               143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        3      4      4
  C3ORF59 WILD-TYPE    185    133    176
D35V8, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               185
  CLUS_2               4               133
  CLUS_3               4               176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF59 MUTATED        2      5      1      3      0
  C3ORF59 WILD-TYPE     66    134     92    111     46
D35V9, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2                66
  CLUS_2               5               134
  CLUS_3               1                92
  CLUS_4               3               111
  CLUS_5               0                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        3      4      4
  C3ORF59 WILD-TYPE    135    234     80
D35V10, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               135
  CLUS_2               4               234
  CLUS_3               4                80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = HUWE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       13      2     24      5
  HUWE1 WILD-TYPE    134    128    161     37
D36V1, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            13             134
  CLUS_2             2             128
  CLUS_3            24             161
  CLUS_4             5              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HUWE1 MUTATED        8      1      7      5      7     17      0
  HUWE1 WILD-TYPE     76     74     87     83     69     57     19
D36V2, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             8              76
  CLUS_2             1              74
  CLUS_3             7              87
  CLUS_4             5              83
  CLUS_5             7              69
  CLUS_6            17              57
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED        4      5      5
  HUWE1 WILD-TYPE     63     58     75
D36V3, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             5              58
  CLUS_3             5              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED        7      5      2
  HUWE1 WILD-TYPE     71     80     45
D36V4, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             7              71
  CLUS_2             5              80
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       11     11     22
  HUWE1 WILD-TYPE    128    194    136
D36V5, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            11             128
  CLUS_2            11             194
  CLUS_3            22             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       13      5     23      3
  HUWE1 WILD-TYPE    163     94    142     59
D36V6, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            13             163
  CLUS_2             5              94
  CLUS_3            23             142
  CLUS_4             3              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       16     19     10
  HUWE1 WILD-TYPE    193    132    135
D36V7, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            16             193
  CLUS_2            19             132
  CLUS_3            10             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       15     11     19
  HUWE1 WILD-TYPE    173    126    161
D36V8, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            15             173
  CLUS_2            11             126
  CLUS_3            19             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HUWE1 MUTATED        5     20      4     12      4
  HUWE1 WILD-TYPE     63    119     89    102     42
D36V9, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             5              63
  CLUS_2            20             119
  CLUS_3             4              89
  CLUS_4            12             102
  CLUS_5             4              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED        9     24     12
  HUWE1 WILD-TYPE    129    214     72
D36V10, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             9             129
  CLUS_2            24             214
  CLUS_3            12              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = SLC9A6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A6 MUTATED        3      0      0      2
  SLC9A6 WILD-TYPE    144    130    185     40
D37V1, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              3              144
  CLUS_2              0              130
  CLUS_3              0              185
  CLUS_4              2               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC9A6 MUTATED        0      0      3      0      0      2      0
  SLC9A6 WILD-TYPE     84     75     91     88     76     72     19
D37V2, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               75
  CLUS_3              3               91
  CLUS_4              0               88
  CLUS_5              0               76
  CLUS_6              2               72
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        1      0      2
  SLC9A6 WILD-TYPE     66     63     78
D37V3, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              0               63
  CLUS_3              2               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        1      0      2
  SLC9A6 WILD-TYPE     77     85     45
D37V4, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              1               77
  CLUS_2              0               85
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        2      0      3
  SLC9A6 WILD-TYPE    137    205    155
D37V5, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              2              137
  CLUS_2              0              205
  CLUS_3              3              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A6 MUTATED        4      0      1      0
  SLC9A6 WILD-TYPE    172     99    164     62
D37V6, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              4              172
  CLUS_2              0               99
  CLUS_3              1              164
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        1      0      4
  SLC9A6 WILD-TYPE    208    151    141
D37V7, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              1              208
  CLUS_2              0              151
  CLUS_3              4              141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        4      0      1
  SLC9A6 WILD-TYPE    184    137    179
D37V8, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              4              184
  CLUS_2              0              137
  CLUS_3              1              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A6 MUTATED        0      3      0      2      0
  SLC9A6 WILD-TYPE     68    136     93    112     46
D37V9, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              0               68
  CLUS_2              3              136
  CLUS_3              0               93
  CLUS_4              2              112
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        3      0      2
  SLC9A6 WILD-TYPE    135    238     82
D37V10, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              3              135
  CLUS_2              0              238
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = ZNF623 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF623 MUTATED        1      2      7      1
  ZNF623 WILD-TYPE    146    128    178     41
D38V1, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1              146
  CLUS_2              2              128
  CLUS_3              7              178
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF623 MUTATED        1      2      3      1      2      1      1
  ZNF623 WILD-TYPE     83     73     91     87     74     73     18
D38V2, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               73
  CLUS_3              3               91
  CLUS_4              1               87
  CLUS_5              2               74
  CLUS_6              1               73
  CLUS_7              1               18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        1      4      1
  ZNF623 WILD-TYPE     66     59     79
D38V3, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              4               59
  CLUS_3              1               79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        3      1      2
  ZNF623 WILD-TYPE     75     84     45
D38V4, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              1               84
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        1      5      5
  ZNF623 WILD-TYPE    138    200    153
D38V5, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1              138
  CLUS_2              5              200
  CLUS_3              5              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF623 MUTATED        1      2      6      2
  ZNF623 WILD-TYPE    175     97    159     60
D38V6, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1              175
  CLUS_2              2               97
  CLUS_3              6              159
  CLUS_4              2               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        4      5      2
  ZNF623 WILD-TYPE    205    146    143
D38V7, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              4              205
  CLUS_2              5              146
  CLUS_3              2              143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        1      5      5
  ZNF623 WILD-TYPE    187    132    175
D38V8, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1              187
  CLUS_2              5              132
  CLUS_3              5              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF623 MUTATED        0      3      0      3      0
  ZNF623 WILD-TYPE     68    136     93    111     46
D38V9, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              0               68
  CLUS_2              3              136
  CLUS_3              0               93
  CLUS_4              3              111
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        0      4      2
  ZNF623 WILD-TYPE    138    234     82
D38V10, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              0              138
  CLUS_2              4              234
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = MLL4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        1      4     11      4
  MLL4 WILD-TYPE    146    126    174     38
D39V1, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1            146
  CLUS_2            4            126
  CLUS_3           11            174
  CLUS_4            4             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL4 MUTATED        2      2      1      2      1     12      0
  MLL4 WILD-TYPE     82     73     93     86     75     62     19
D39V2, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             73
  CLUS_3            1             93
  CLUS_4            2             86
  CLUS_5            1             75
  CLUS_6           12             62
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        0      2      4
  MLL4 WILD-TYPE     67     61     76
D39V3, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            2             61
  CLUS_3            4             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        2      4      0
  MLL4 WILD-TYPE     76     81     47
D39V4, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            4             81
  CLUS_3            0             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        1      6     12
  MLL4 WILD-TYPE    138    199    146
D39V5, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1            138
  CLUS_2            6            199
  CLUS_3           12            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        5      3     11      0
  MLL4 WILD-TYPE    171     96    154     62
D39V6, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5            171
  CLUS_2            3             96
  CLUS_3           11            154
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        4     14      2
  MLL4 WILD-TYPE    205    137    143
D39V7, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            4            205
  CLUS_2           14            137
  CLUS_3            2            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        7      7      6
  MLL4 WILD-TYPE    181    130    174
D39V8, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            7            181
  CLUS_2            7            130
  CLUS_3            6            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        1     10      1      3      0
  MLL4 WILD-TYPE     67    129     92    111     46
D39V9, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1             67
  CLUS_2           10            129
  CLUS_3            1             92
  CLUS_4            3            111
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        1      9      5
  MLL4 WILD-TYPE    137    229     79
D39V10, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1            137
  CLUS_2            9            229
  CLUS_3            5             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = CTCF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        4      1     11      0
  CTCF WILD-TYPE    143    129    174     42
D40V1, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            143
  CLUS_2            1            129
  CLUS_3           11            174
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTCF MUTATED        1      3      2      0      1      9      0
  CTCF WILD-TYPE     83     72     92     88     75     65     19
D40V2, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             72
  CLUS_3            2             92
  CLUS_4            0             88
  CLUS_5            1             75
  CLUS_6            9             65
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        1      1      6
  CTCF WILD-TYPE     66     62     74
D40V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1             62
  CLUS_3            6             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        2      5      1
  CTCF WILD-TYPE     76     80     46
D40V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             76
  CLUS_2            5             80
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        3      5      7
  CTCF WILD-TYPE    136    200    151
D40V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3            136
  CLUS_2            5            200
  CLUS_3            7            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        4      3      8      0
  CTCF WILD-TYPE    172     96    157     62
D40V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            172
  CLUS_2            3             96
  CLUS_3            8            157
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        5      6      5
  CTCF WILD-TYPE    204    145    140
D40V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            5            204
  CLUS_2            6            145
  CLUS_3            5            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        7      4      5
  CTCF WILD-TYPE    181    133    175
D40V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            7            181
  CLUS_2            4            133
  CLUS_3            5            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        3      5      2      4      0
  CTCF WILD-TYPE     65    134     91    110     46
D40V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3             65
  CLUS_2            5            134
  CLUS_3            2             91
  CLUS_4            4            110
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        5      6      3
  CTCF WILD-TYPE    133    232     81
D40V10, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            5            133
  CLUS_2            6            232
  CLUS_3            3             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = NCOR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOR1 MUTATED        4      6      6      1
  NCOR1 WILD-TYPE    143    124    179     41
D41V1, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             4             143
  CLUS_2             6             124
  CLUS_3             6             179
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOR1 MUTATED        2      3      0      5      2      6      0
  NCOR1 WILD-TYPE     82     72     94     83     74     68     19
D41V2, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              72
  CLUS_3             0              94
  CLUS_4             5              83
  CLUS_5             2              74
  CLUS_6             6              68
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        1      4      5
  NCOR1 WILD-TYPE     66     59     75
D41V3, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             4              59
  CLUS_3             5              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        3      6      1
  NCOR1 WILD-TYPE     75     79     46
D41V4, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             3              75
  CLUS_2             6              79
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        3      9      6
  NCOR1 WILD-TYPE    136    196    152
D41V5, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             3             136
  CLUS_2             9             196
  CLUS_3             6             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOR1 MUTATED        3      6      8      1
  NCOR1 WILD-TYPE    173     93    157     61
D41V6, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             3             173
  CLUS_2             6              93
  CLUS_3             8             157
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED       10      4      4
  NCOR1 WILD-TYPE    199    147    141
D41V7, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1            10             199
  CLUS_2             4             147
  CLUS_3             4             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        5      9      4
  NCOR1 WILD-TYPE    183    128    176
D41V8, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             5             183
  CLUS_2             9             128
  CLUS_3             4             176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOR1 MUTATED        4      6      5      2      1
  NCOR1 WILD-TYPE     64    133     88    112     45
D41V9, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             6             133
  CLUS_3             5              88
  CLUS_4             2             112
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        6     10      2
  NCOR1 WILD-TYPE    132    228     82
D41V10, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             6             132
  CLUS_2            10             228
  CLUS_3             2              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = PTPN14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        3      4      3      5
  PTPN14 WILD-TYPE    144    126    182     37
D42V1, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3              144
  CLUS_2              4              126
  CLUS_3              3              182
  CLUS_4              5               37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN14 MUTATED        1      3      3      2      0      6      0
  PTPN14 WILD-TYPE     83     72     91     86     76     68     19
D42V2, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               72
  CLUS_3              3               91
  CLUS_4              2               86
  CLUS_5              0               76
  CLUS_6              6               68
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        2      2      2
  PTPN14 WILD-TYPE     65     61     78
D42V3, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2               61
  CLUS_3              2               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        3      3      0
  PTPN14 WILD-TYPE     75     82     47
D42V4, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              3               82
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        3      4      8
  PTPN14 WILD-TYPE    136    201    150
D42V5, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3              136
  CLUS_2              4              201
  CLUS_3              8              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        4      3      7      1
  PTPN14 WILD-TYPE    172     96    158     61
D42V6, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4              172
  CLUS_2              3               96
  CLUS_3              7              158
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        3      9      3
  PTPN14 WILD-TYPE    206    142    142
D42V7, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3              206
  CLUS_2              9              142
  CLUS_3              3              142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        4      5      6
  PTPN14 WILD-TYPE    184    132    174
D42V8, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4              184
  CLUS_2              5              132
  CLUS_3              6              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        0      7      3      3      0
  PTPN14 WILD-TYPE     68    132     90    111     46
D42V9, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              0               68
  CLUS_2              7              132
  CLUS_3              3               90
  CLUS_4              3              111
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        2      9      2
  PTPN14 WILD-TYPE    136    229     82
D42V10, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2              136
  CLUS_2              9              229
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = ITGB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB1 MUTATED        5      4      4      0
  ITGB1 WILD-TYPE    142    126    181     42
D43V1, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             5             142
  CLUS_2             4             126
  CLUS_3             4             181
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGB1 MUTATED        0      1      1      5      1      5      0
  ITGB1 WILD-TYPE     84     74     93     83     75     69     19
D43V2, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              74
  CLUS_3             1              93
  CLUS_4             5              83
  CLUS_5             1              75
  CLUS_6             5              69
  CLUS_7             0              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB1 MUTATED        1      4      2
  ITGB1 WILD-TYPE     66     59     78
D43V3, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             4              59
  CLUS_3             2              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB1 MUTATED        4      2      1
  ITGB1 WILD-TYPE     74     83     46
D43V4, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             4              74
  CLUS_2             2              83
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB1 MUTATED        0      5      8
  ITGB1 WILD-TYPE    139    200    150
D43V5, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             0             139
  CLUS_2             5             200
  CLUS_3             8             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB1 MUTATED        1      4      7      1
  ITGB1 WILD-TYPE    175     95    158     61
D43V6, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             4              95
  CLUS_3             7             158
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB1 MUTATED        7      4      2
  ITGB1 WILD-TYPE    202    147    143
D43V7, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             7             202
  CLUS_2             4             147
  CLUS_3             2             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB1 MUTATED        2      4      7
  ITGB1 WILD-TYPE    186    133    173
D43V8, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             2             186
  CLUS_2             4             133
  CLUS_3             7             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGB1 MUTATED        1      2      3      7      0
  ITGB1 WILD-TYPE     67    137     90    107     46
D43V9, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             2             137
  CLUS_3             3              90
  CLUS_4             7             107
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB1 MUTATED        4      8      1
  ITGB1 WILD-TYPE    134    230     83
D43V10, multiclass
        clus
vv       ITGB1 MUTATED ITGB1 WILD-TYPE
  CLUS_1             4             134
  CLUS_2             8             230
  CLUS_3             1              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        4      2     10      0
  IRS4 WILD-TYPE    143    128    175     42
D44V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4            143
  CLUS_2            2            128
  CLUS_3           10            175
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        4      2      1      3      5      2      0
  IRS4 WILD-TYPE     80     73     93     85     71     72     19
D44V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             80
  CLUS_2            2             73
  CLUS_3            1             93
  CLUS_4            3             85
  CLUS_5            5             71
  CLUS_6            2             72
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      3      2
  IRS4 WILD-TYPE     65     60     78
D44V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            3             60
  CLUS_3            2             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        3      2      2
  IRS4 WILD-TYPE     75     83     45
D44V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             75
  CLUS_2            2             83
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2     11      4
  IRS4 WILD-TYPE    137    194    154
D44V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            137
  CLUS_2           11            194
  CLUS_3            4            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      5      4      5
  IRS4 WILD-TYPE    173     94    161     57
D44V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            173
  CLUS_2            5             94
  CLUS_3            4            161
  CLUS_4            5             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED       10      5      2
  IRS4 WILD-TYPE    199    146    143
D44V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           10            199
  CLUS_2            5            146
  CLUS_3            2            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      6      9
  IRS4 WILD-TYPE    186    131    171
D44V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            186
  CLUS_2            6            131
  CLUS_3            9            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        2      2      2      3      6
  IRS4 WILD-TYPE     66    137     91    111     40
D44V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            2            137
  CLUS_3            2             91
  CLUS_4            3            111
  CLUS_5            6             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2     11      2
  IRS4 WILD-TYPE    136    227     82
D44V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            136
  CLUS_2           11            227
  CLUS_3            2             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = SRPX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      2      2      1
  SRPX WILD-TYPE    146    128    183     41
D45V1, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1            146
  CLUS_2            2            128
  CLUS_3            2            183
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRPX MUTATED        2      1      1      1      1      1      0
  SRPX WILD-TYPE     82     74     93     87     75     73     19
D45V2, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             74
  CLUS_3            1             93
  CLUS_4            1             87
  CLUS_5            1             75
  CLUS_6            1             73
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      0      3
  SRPX WILD-TYPE     66     63     77
D45V3, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             66
  CLUS_2            0             63
  CLUS_3            3             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      2      1
  SRPX WILD-TYPE     77     83     46
D45V4, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             77
  CLUS_2            2             83
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      2      2
  SRPX WILD-TYPE    137    203    156
D45V5, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            137
  CLUS_2            2            203
  CLUS_3            2            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        3      2      1      0
  SRPX WILD-TYPE    173     97    164     62
D45V6, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            3            173
  CLUS_2            2             97
  CLUS_3            1            164
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      2      3
  SRPX WILD-TYPE    207    149    142
D45V7, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            207
  CLUS_2            2            149
  CLUS_3            3            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        3      2      2
  SRPX WILD-TYPE    185    135    178
D45V8, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            3            185
  CLUS_2            2            135
  CLUS_3            2            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        1      3      0      1      1
  SRPX WILD-TYPE     67    136     93    113     45
D45V9, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             67
  CLUS_2            3            136
  CLUS_3            0             93
  CLUS_4            1            113
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      2      2
  SRPX WILD-TYPE    136    236     82
D45V10, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            136
  CLUS_2            2            236
  CLUS_3            2             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = KIAA1949 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1949 MUTATED        3      1      2      0
  KIAA1949 WILD-TYPE    144    129    183     42
D46V1, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                3                144
  CLUS_2                1                129
  CLUS_3                2                183
  CLUS_4                0                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1949 MUTATED        1      2      0      1      0      2      0
  KIAA1949 WILD-TYPE     83     73     94     87     76     72     19
D46V2, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 73
  CLUS_3                0                 94
  CLUS_4                1                 87
  CLUS_5                0                 76
  CLUS_6                2                 72
  CLUS_7                0                 19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        1      0      0
  KIAA1949 WILD-TYPE     66     63     80
D46V3, multiclass
[1] "Remove cluster labels:" "KIAA1949 MUTATED"      
clus
  KIAA1949 MUTATED KIAA1949 WILD-TYPE 
                 1                209 
        TCGA-BA-4074         TCGA-BA-4078         TCGA-BA-5149 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-5559         TCGA-BA-6869         TCGA-BA-6870 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-6871         TCGA-BA-6872         TCGA-BA-6873 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BB-4217         TCGA-CN-4723         TCGA-CN-4725 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4734         TCGA-CN-4735 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5361         TCGA-CN-5363         TCGA-CN-5364 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5334         TCGA-CQ-6218 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-6219         TCGA-CQ-6220         TCGA-CQ-6221 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-6222         TCGA-CQ-6224         TCGA-CQ-6225 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CV-5430 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6962 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7089         TCGA-CV-7090         TCGA-CV-7091 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7095         TCGA-CV-7097         TCGA-CV-7099 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7100         TCGA-CV-7101         TCGA-CV-7102 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7103         TCGA-CV-7104         TCGA-CV-7177 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7178         TCGA-CV-7180         TCGA-CV-7183 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7235         TCGA-CV-7236         TCGA-CV-7238 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7242         TCGA-CV-7243         TCGA-CV-7245 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7247         TCGA-CV-7248         TCGA-CV-7250 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7252         TCGA-CV-7253         TCGA-CV-7254 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7255         TCGA-CV-7261         TCGA-CV-7263 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7406         TCGA-CV-7407         TCGA-CV-7410 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7446         TCGA-CV-7568         TCGA-CX-7085 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-7591         TCGA-DQ-7592 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7632 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        1      0      0
  KIAA1949 WILD-TYPE     77     85     47
D46V4, multiclass
[1] "Remove cluster labels:" "KIAA1949 MUTATED"      
clus
  KIAA1949 MUTATED KIAA1949 WILD-TYPE 
                 1                209 
        TCGA-BA-4074         TCGA-BA-4078         TCGA-BA-5149 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-5559         TCGA-BA-6869         TCGA-BA-6870 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BA-6871         TCGA-BA-6872         TCGA-BA-6873 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-BB-4217         TCGA-CN-4723         TCGA-CN-4725 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4734         TCGA-CN-4735 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5361         TCGA-CN-5363         TCGA-CN-5364 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5334         TCGA-CQ-6218 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-6219         TCGA-CQ-6220         TCGA-CQ-6221 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-6222         TCGA-CQ-6224         TCGA-CQ-6225 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CV-5430 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6962 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7089         TCGA-CV-7090         TCGA-CV-7091 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7095         TCGA-CV-7097         TCGA-CV-7099 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7100         TCGA-CV-7101         TCGA-CV-7102 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7103         TCGA-CV-7104         TCGA-CV-7177 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7178         TCGA-CV-7180         TCGA-CV-7183 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7235         TCGA-CV-7236         TCGA-CV-7238 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7242         TCGA-CV-7243         TCGA-CV-7245 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7247         TCGA-CV-7248         TCGA-CV-7250 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7252         TCGA-CV-7253         TCGA-CV-7254 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7255         TCGA-CV-7261         TCGA-CV-7263 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7406         TCGA-CV-7407         TCGA-CV-7410 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CV-7446         TCGA-CV-7568         TCGA-CX-7085 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-7591         TCGA-DQ-7592 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7632 
"KIAA1949 WILD-TYPE" "KIAA1949 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        2      3      1
  KIAA1949 WILD-TYPE    137    202    157
D46V5, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                137
  CLUS_2                3                202
  CLUS_3                1                157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1949 MUTATED        2      2      2      0
  KIAA1949 WILD-TYPE    174     97    163     62
D46V6, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                174
  CLUS_2                2                 97
  CLUS_3                2                163
  CLUS_4                0                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        2      3      1
  KIAA1949 WILD-TYPE    207    148    144
D46V7, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                207
  CLUS_2                3                148
  CLUS_3                1                144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        2      2      2
  KIAA1949 WILD-TYPE    186    135    178
D46V8, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                186
  CLUS_2                2                135
  CLUS_3                2                178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1949 MUTATED        2      1      2      1      0
  KIAA1949 WILD-TYPE     66    138     91    113     46
D46V9, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                 66
  CLUS_2                1                138
  CLUS_3                2                 91
  CLUS_4                1                113
  CLUS_5                0                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        3      2      1
  KIAA1949 WILD-TYPE    135    236     83
D46V10, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                3                135
  CLUS_2                2                236
  CLUS_3                1                 83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = NOTCH2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED        5      8      5      1
  NOTCH2 WILD-TYPE    142    122    180     41
D47V1, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              5              142
  CLUS_2              8              122
  CLUS_3              5              180
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH2 MUTATED        3      2      4      3      2      3      3
  NOTCH2 WILD-TYPE     81     73     90     85     74     71     16
D47V2, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              2               73
  CLUS_3              4               90
  CLUS_4              3               85
  CLUS_5              2               74
  CLUS_6              3               71
  CLUS_7              3               16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        3      6      1
  NOTCH2 WILD-TYPE     64     57     79
D47V3, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              6               57
  CLUS_3              1               79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        6      3      1
  NOTCH2 WILD-TYPE     72     82     46
D47V4, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              6               72
  CLUS_2              3               82
  CLUS_3              1               46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        7      6      7
  NOTCH2 WILD-TYPE    132    199    151
D47V5, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              7              132
  CLUS_2              6              199
  CLUS_3              7              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED       11      2      6      1
  NOTCH2 WILD-TYPE    165     97    159     61
D47V6, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1             11              165
  CLUS_2              2               97
  CLUS_3              6              159
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        6      8      6
  NOTCH2 WILD-TYPE    203    143    139
D47V7, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              6              203
  CLUS_2              8              143
  CLUS_3              6              139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED       10      5      5
  NOTCH2 WILD-TYPE    178    132    175
D47V8, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1             10              178
  CLUS_2              5              132
  CLUS_3              5              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH2 MUTATED        4      5      3      4      1
  NOTCH2 WILD-TYPE     64    134     90    110     45
D47V9, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              5              134
  CLUS_3              3               90
  CLUS_4              4              110
  CLUS_5              1               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        7      8      2
  NOTCH2 WILD-TYPE    131    230     82
D47V10, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              7              131
  CLUS_2              8              230
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      4      0      0
  GAGE2A WILD-TYPE    146    126    185     42
D48V1, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              146
  CLUS_2              4              126
  CLUS_3              0              185
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2A MUTATED        0      2      0      3      0      0      0
  GAGE2A WILD-TYPE     84     73     94     85     76     74     19
D48V2, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               73
  CLUS_3              0               94
  CLUS_4              3               85
  CLUS_5              0               76
  CLUS_6              0               74
  CLUS_7              0               19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      1      1
  GAGE2A WILD-TYPE     66     62     79
D48V3, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1               62
  CLUS_3              1               79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      2      0
  GAGE2A WILD-TYPE     77     83     47
D48V4, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               77
  CLUS_2              2               83
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      4      0
  GAGE2A WILD-TYPE    138    201    158
D48V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              138
  CLUS_2              4              201
  CLUS_3              0              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      3      1      0
  GAGE2A WILD-TYPE    175     96    164     62
D48V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              175
  CLUS_2              3               96
  CLUS_3              1              164
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        3      1      1
  GAGE2A WILD-TYPE    206    150    144
D48V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              206
  CLUS_2              1              150
  CLUS_3              1              144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      3      1
  GAGE2A WILD-TYPE    187    134    179
D48V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              187
  CLUS_2              3              134
  CLUS_3              1              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        1      0      2      1      1
  GAGE2A WILD-TYPE     67    139     91    113     45
D48V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               67
  CLUS_2              0              139
  CLUS_3              2               91
  CLUS_4              1              113
  CLUS_5              1               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      3      1
  GAGE2A WILD-TYPE    137    235     83
D48V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              137
  CLUS_2              3              235
  CLUS_3              1               83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = LCP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCP1 MUTATED        6      7      2      0
  LCP1 WILD-TYPE    141    123    183     42
D49V1, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            6            141
  CLUS_2            7            123
  CLUS_3            2            183
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LCP1 MUTATED        1      6      3      4      0      1      0
  LCP1 WILD-TYPE     83     69     91     84     76     73     19
D49V2, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            6             69
  CLUS_3            3             91
  CLUS_4            4             84
  CLUS_5            0             76
  CLUS_6            1             73
  CLUS_7            0             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP1 MUTATED        1      3      5
  LCP1 WILD-TYPE     66     60     75
D49V3, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            3             60
  CLUS_3            5             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP1 MUTATED        4      4      1
  LCP1 WILD-TYPE     74     81     46
D49V4, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            4             74
  CLUS_2            4             81
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP1 MUTATED        4      5      6
  LCP1 WILD-TYPE    135    200    152
D49V5, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            4            135
  CLUS_2            5            200
  CLUS_3            6            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCP1 MUTATED        4      7      4      0
  LCP1 WILD-TYPE    172     92    161     62
D49V6, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            4            172
  CLUS_2            7             92
  CLUS_3            4            161
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP1 MUTATED        7      4      4
  LCP1 WILD-TYPE    202    147    141
D49V7, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            7            202
  CLUS_2            4            147
  CLUS_3            4            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP1 MUTATED        5      5      5
  LCP1 WILD-TYPE    183    132    175
D49V8, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            5            183
  CLUS_2            5            132
  CLUS_3            5            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCP1 MUTATED        2      3      4      3      0
  LCP1 WILD-TYPE     66    136     89    111     46
D49V9, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            3            136
  CLUS_3            4             89
  CLUS_4            3            111
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP1 MUTATED        4      8      0
  LCP1 WILD-TYPE    134    230     84
D49V10, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            4            134
  CLUS_2            8            230
  CLUS_3            0             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
