		Clinical Features	Time to Death		YEARS_TO_BIRTH		PATHOLOGIC_STAGE		PATHOLOGY_T_STAGE		PATHOLOGY_N_STAGE		PATHOLOGY_M_STAGE		GENDER		KARNOFSKY_PERFORMANCE_SCORE		NUMBER_PACK_YEARS_SMOKED		YEAR_OF_TOBACCO_SMOKING_ONSET		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
3p gain	8 (12%)	58	0.0083361	0.371	0.08366	0.654	0.01632	0.441	0.46619	1	0.032692	0.569	0.2127	0.869	0.12762	0.723	1	1	NA	NA	NA	NA	0.29224	0.94	1	1
3q gain	8 (12%)	58	0.0083361	0.371	0.08366	0.654	0.01593	0.441	0.46675	1	0.032692	0.569	0.2127	0.869	0.12762	0.723	1	1	NA	NA	NA	NA	0.2947	0.94	1	1
4p gain	24 (36%)	42	0.88522	1	0.26544	0.94	0.14077	0.731	0.81012	1	1	1	0.12381	0.723	1	1	0.52797	1	0.046719	0.579	0.036888	0.569	1	1	0.28699	0.94
4q gain	24 (36%)	42	0.88522	1	0.26544	0.94	0.14202	0.731	0.81016	1	1	1	0.12381	0.723	1	1	0.52797	1	0.046719	0.579	0.036888	0.569	1	1	0.28699	0.94
5p gain	8 (12%)	58	0.0070205	0.354	0.06607	0.649	0.00193	0.208	0.36342	1	0.087416	0.654	0.0095238	0.379	0.45546	1	NA	NA	NA	NA	NA	NA	1	1	1	1
5q gain	8 (12%)	58	0.0070205	0.354	0.06607	0.649	0.00141	0.178	0.36542	1	0.087416	0.654	0.0095238	0.379	0.45546	1	NA	NA	NA	NA	NA	NA	1	1	1	1
7p gain	24 (36%)	42	0.028138	0.569	0.17162	0.777	0.36069	1	0.69031	1	0.6361	1	0.12381	0.723	0.19497	0.847	0.52797	1	0.78371	1	0.060602	0.619	1	1	0.30328	0.94
7q gain	24 (36%)	42	0.028138	0.569	0.17162	0.777	0.35644	1	0.69033	1	0.6361	1	0.12381	0.723	0.19497	0.847	0.52797	1	0.78371	1	0.060602	0.619	1	1	0.30328	0.94
8p gain	17 (26%)	49	0.92589	1	0.14235	0.731	0.38924	1	0.40711	1	1	1	0.44286	1	0.77561	1	0.52797	1	0.39401	1	NA	NA	1	1	0.58768	1
8q gain	18 (27%)	48	0.92589	1	0.14972	0.735	0.22838	0.894	0.44958	1	1	1	0.071429	0.654	0.57661	1	0.52797	1	0.39401	1	NA	NA	1	1	0.58768	1
9p gain	10 (15%)	56	0.62398	1	0.97859	1	0.12013	0.723	0.19419	0.847	0.30573	0.94	1	1	1	1	1	1	0.75893	1	NA	NA	0.37536	1	0.53476	1
9q gain	10 (15%)	56	0.62398	1	0.97859	1	0.12263	0.723	0.19347	0.847	0.30573	0.94	1	1	1	1	1	1	0.75893	1	NA	NA	0.37306	1	0.53476	1
10p gain	4 (6%)	62	0.55809	1	0.33982	1	0.26699	0.94	0.4515	1	NA	NA	1	1	1	1	NA	NA	NA	NA	NA	NA	1	1	1	1
11p gain	15 (23%)	51	0.95598	1	0.81243	1	0.74169	1	0.81246	1	0.61737	1	0.44286	1	1	1	1	1	0.046719	0.579	0.036888	0.569	0.55932	1	0.07563	0.654
11q gain	15 (23%)	51	0.48491	1	0.94508	1	0.74066	1	0.80951	1	1	1	0.44286	1	1	1	1	1	0.046719	0.579	0.036888	0.569	0.55967	1	0.07563	0.654
12p gain	19 (29%)	47	0.66053	1	0.013683	0.415	0.077249	0.654	0.31665	0.958	1	1	0.087302	0.654	0.41203	1	0.52797	1	0.35723	1	NA	NA	1	1	1	1
12q gain	20 (30%)	46	0.20916	0.869	0.069554	0.654	0.11075	0.723	0.71038	1	0.33007	0.993	0.087302	0.654	0.59328	1	0.52797	1	0.23427	0.894	0.036888	0.569	0.80498	1	1	1
14q gain	21 (32%)	45	0.81862	1	0.14427	0.731	0.096739	0.697	0.38094	1	1	1	0.10476	0.723	0.79421	1	0.52797	1	0.23427	0.894	0.036888	0.569	1	1	0.60915	1
15q gain	21 (32%)	45	0.33961	1	0.28265	0.94	0.41126	1	0.48	1	0.35044	1	0.10476	0.723	0.79421	1	0.52797	1	1	1	0.23304	0.894	0.81502	1	0.12381	0.723
16p gain	21 (32%)	45	0.21703	0.877	0.9945	1	0.47159	1	0.40362	1	0.63533	1	1	1	1	1	0.52797	1	0.046719	0.579	0.036888	0.569	1	1	0.12381	0.723
16q gain	21 (32%)	45	0.21703	0.877	0.9945	1	0.47537	1	0.40377	1	0.63533	1	1	1	1	1	0.52797	1	0.046719	0.579	0.036888	0.569	1	1	0.12381	0.723
18p gain	17 (26%)	49	0.87219	1	0.27763	0.94	0.29301	0.94	0.43229	1	0.30335	0.94	0.4	1	0.77561	1	1	1	0.29752	0.94	NA	NA	1	1	0.57049	1
18q gain	16 (24%)	50	0.35469	1	0.52462	1	0.31047	0.943	0.19871	0.858	0.30335	0.94	0.4	1	1	1	1	1	0.29752	0.94	NA	NA	1	1	0.30481	0.94
19p gain	19 (29%)	47	0.019245	0.502	0.029102	0.569	0.01523	0.441	0.51895	1	0.0024579	0.232	0.057143	0.617	0.41203	1	1	1	0.78371	1	0.060602	0.619	0.25644	0.936	0.29038	0.94
19q gain	17 (26%)	49	0.10561	0.723	0.013712	0.415	0.29714	0.94	0.64396	1	0.13589	0.731	0.044444	0.579	0.77561	1	1	1	1	1	0.23304	0.894	0.59434	1	0.29038	0.94
20p gain	20 (30%)	46	0.7994	1	0.1281	0.723	0.36753	1	0.79308	1	0.35044	1	0.52381	1	0.59328	1	0.52797	1	0.23427	0.894	0.036888	0.569	0.36429	1	0.58768	1
20q gain	21 (32%)	45	0.33111	0.993	0.052958	0.615	0.13649	0.731	0.84503	1	0.35044	1	0.52381	1	0.433	1	0.52797	1	0.23427	0.894	0.036888	0.569	0.36695	1	0.60915	1
21q gain	4 (6%)	62	0.49638	1	0.59075	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1	NA	NA	NA	NA	1	1	1	1
22q gain	19 (29%)	47	0.16438	0.767	0.41522	1	0.49017	1	0.52073	1	0.16558	0.768	0.52381	1	0.41203	1	1	1	0.78371	1	0.060602	0.619	0.79392	1	0.58768	1
xp gain	7 (11%)	59	0.40566	1	0.95016	1	0.69785	1	0.88114	1	1	1	0.2127	0.869	0.69108	1	1	1	NA	NA	NA	NA	0.51922	1	0.46583	1
xq gain	6 (9%)	60	0.41231	1	0.81473	1	0.38281	1	0.66172	1	1	1	0.2127	0.869	0.38804	1	1	1	NA	NA	NA	NA	0.45877	1	0.38953	1
1p loss	53 (80%)	13	0.43093	1	0.47784	1	0.02866	0.569	0.04079	0.579	1	1	0.1619	0.76	0.53446	1	0.51049	1	0.60902	1	NA	NA	1	1	1	1
1q loss	52 (79%)	14	0.82307	1	0.45601	1	0.0062599	0.354	0.01313	0.415	0.52875	1	0.2127	0.869	0.36732	1	0.51049	1	NA	NA	NA	NA	1	1	1	1
2p loss	46 (70%)	20	0.94086	1	0.24094	0.905	0.14455	0.731	0.11429	0.723	1	1	0.4	1	0.28399	0.94	0.51049	1	NA	NA	NA	NA	1	1	1	1
2q loss	46 (70%)	20	0.94086	1	0.24094	0.905	0.14529	0.731	0.11302	0.723	1	1	0.4	1	0.28399	0.94	0.51049	1	NA	NA	NA	NA	1	1	1	1
3p loss	9 (14%)	57	0.19347	0.847	0.046481	0.579	0.075559	0.654	0.02267	0.569	1	1	1	1	0.46918	1	NA	NA	NA	NA	NA	NA	1	1	0.53476	1
3q loss	8 (12%)	58	0.2309	0.894	0.10699	0.723	0.14212	0.731	0.054009	0.615	1	1	1	1	0.25608	0.936	NA	NA	NA	NA	NA	NA	1	1	0.53476	1
5p loss	10 (15%)	56	0.77149	1	0.64177	1	0.13448	0.731	0.084179	0.654	1	1	1	1	1	1	0.42308	1	0.15543	0.752	0.073638	0.654	0.15905	0.752	0.12121	0.723
5q loss	10 (15%)	56	0.77149	1	0.64177	1	0.13301	0.731	0.083529	0.654	1	1	1	1	1	1	0.42308	1	0.15543	0.752	0.073638	0.654	0.15924	0.752	0.12121	0.723
6p loss	51 (77%)	15	0.57922	1	0.37871	1	0.079429	0.654	0.056529	0.617	0.56754	1	0.35556	1	0.24419	0.905	0.51049	1	NA	NA	NA	NA	1	1	1	1
6q loss	51 (77%)	15	0.57922	1	0.37871	1	0.084089	0.654	0.054869	0.615	0.56754	1	0.35556	1	0.24419	0.905	0.51049	1	NA	NA	NA	NA	1	1	1	1
8p loss	9 (14%)	57	0.20433	0.869	0.77915	1	0.74116	1	0.43796	1	1	1	1	1	0.72701	1	1	1	NA	NA	NA	NA	0.61544	1	0.56578	1
8q loss	8 (12%)	58	0.24349	0.905	0.57532	1	0.69951	1	0.4115	1	1	1	1	1	1	1	1	1	NA	NA	NA	NA	0.56702	1	1	1
9p loss	10 (15%)	56	0.0036364	0.275	0.011638	0.415	1	1	1	1	0.52875	1	1	1	0.5083	1	NA	NA	NA	NA	NA	NA	1	1	0.53476	1
9q loss	10 (15%)	56	0.0036364	0.275	0.011638	0.415	1	1	1	1	0.52875	1	1	1	0.5083	1	NA	NA	NA	NA	NA	NA	1	1	0.53476	1
10p loss	48 (73%)	18	0.1279	0.723	0.76226	1	0.54583	1	0.39541	1	1	1	0.30952	0.943	1	1	0.55944	1	0.26049	0.938	NA	NA	1	1	1	1
10q loss	49 (74%)	17	0.146	0.731	0.9532	1	0.34714	1	0.2099	0.869	1	1	0.30952	0.943	1	1	0.55944	1	0.26049	0.938	NA	NA	1	1	1	1
11p loss	7 (11%)	59	0.30544	0.94	0.052659	0.615	0.096239	0.697	0.077449	0.654	0.46143	1	1	1	0.69108	1	1	1	NA	NA	NA	NA	1	1	1	1
11q loss	7 (11%)	59	0.30544	0.94	0.052659	0.615	0.096059	0.697	0.078359	0.654	0.46143	1	1	1	0.69108	1	1	1	NA	NA	NA	NA	1	1	1	1
13q loss	43 (65%)	23	0.54511	1	0.064122	0.646	0.44349	1	0.35426	1	0.30071	0.94	1	1	0.2941	0.94	1	1	0.47395	1	0.37109	1	0.81766	1	1	1
16p loss	4 (6%)	62	3.4822e-09	1.32e-06	0.51873	1	0.00039	0.059	0.0065699	0.354	3.3558e-05	0.00846	0.10952	0.723	0.63912	1	NA	NA	NA	NA	NA	NA	1	1	1	1
16q loss	5 (8%)	61	2.0107e-09	1.32e-06	0.2208	0.888	0.00442	0.304	0.04817	0.587	0.00016452	0.0311	0.10952	0.723	0.64106	1	NA	NA	NA	NA	NA	NA	1	1	1	1
17p loss	50 (76%)	16	0.78793	1	0.14856	0.734	0.072969	0.654	0.04258	0.579	0.56754	1	0.35556	1	0.15789	0.752	0.51049	1	NA	NA	NA	NA	1	1	1	1
17q loss	50 (76%)	16	0.78793	1	0.14856	0.734	0.074979	0.654	0.04217	0.579	0.56754	1	0.35556	1	0.15789	0.752	0.51049	1	NA	NA	NA	NA	1	1	1	1
18p loss	8 (12%)	58	0.97551	1	0.45508	1	0.44522	1	0.89889	1	0.21076	0.869	1	1	0.25608	0.936	1	1	NA	NA	NA	NA	0.29458	0.94	1	1
18q loss	10 (15%)	56	0.43267	1	0.34296	1	0.13916	0.731	0.83279	1	0.25752	0.936	1	1	0.29506	0.94	1	1	NA	NA	NA	NA	0.37589	1	1	1
19q loss	3 (5%)	63	0.13166	0.731	0.42325	1	0.01225	0.415	0.19321	0.847	0.028894	0.569	1	1	1	1	NA	NA	NA	NA	NA	NA	0.10072	0.718	0.11111	0.723
20p loss	4 (6%)	62	0.63053	1	0.23679	0.9	0.13944	0.731	0.14223	0.731	0.30374	0.94	1	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
20q loss	3 (5%)	63	0.43607	1	0.43222	1	0.03923	0.579	0.02585	0.569	0.30374	0.94	1	1	1	1	NA	NA	NA	NA	NA	NA	1	1	NA	NA
21q loss	35 (53%)	31	0.03529	0.569	0.37509	1	0.90593	1	0.78097	1	0.07309	0.654	1	1	0.80476	1	0.23077	0.894	0.70482	1	0.11235	0.723	0.54436	1	0.61294	1
22q loss	8 (12%)	58	0.28986	0.94	0.78316	1	0.1774	0.798	1	1	0.21076	0.869	0.2619	0.938	0.055318	0.615	1	1	NA	NA	NA	NA	0.56725	1	0.38953	1
xp loss	38 (58%)	28	0.86493	1	0.08082	0.654	0.29097	0.94	0.54598	1	1	1	1	1	0.12798	0.723	1	1	0.16993	0.777	0.11235	0.723	0.81289	1	1	1
xq loss	39 (59%)	27	0.34571	1	0.092322	0.684	0.30455	0.94	0.36127	1	1	1	1	1	0.13624	0.731	1	1	0.16993	0.777	0.23304	0.894	0.81832	1	1	1
