Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_CELL_CYCLE.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_SMALL_CELL_LUNG_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_MELANOMA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_PROSTATE_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_GLIOMA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_PATHWAYS_IN_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	heatmap.png	enriched_pathways_hypergeometricTest_result	Level_4	png	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	heatmap.pdf	enriched_pathways_hypergeometricTest	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
MSigDB_C2_pathways	c2.cp.v3.0-2.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_CELL_CYCLE.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_SMALL_CELL_LUNG_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_MELANOMA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_PROSTATE_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_GLIOMA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	KEGG_PATHWAYS_IN_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	heatmap.png	enriched_pathways_hypergeometricTest_result	Level_4	png	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	heatmap.pdf	enriched_pathways_hypergeometricTest	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
gene_list	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:14	Pathway_Overlaps_MSigDB_MutSig2CV_2015082100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_KICH-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2015082100.0.0	yes
