[1] "ofn"        "-oTKIRP-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/20139337/KIRP-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/19781624/transformed.cor.cli.txt"

nPatients in clinical file=291, in cluster file=288, common to both=288
[1]  31 288
[1] "AMP PEAK 1(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          45                          243 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          45                          243 
[1] "AMP PEAK 2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          53                          235 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          53                          235 
[1] "AMP PEAK 3(3Q27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE 
                         100                          188 
  AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE 
                         100                          188 
[1] "AMP PEAK 4(5Q35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          37                          251 
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          37                          251 
[1] "AMP PEAK 5(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE 
                         177                          111 
  AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE 
                         177                          111 
[1] "AMP PEAK 6(17Q25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE 
                          201                            87 
  AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE 
                          201                            87 
[1] "AMP PEAK 7(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE 
                           31                           257 
  AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE 
                           31                           257 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            55                            233 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            55                            233 
[1] "DEL PEAK  2(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE 
                          8                         280 
  DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE 
                          8                         280 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           278 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           278 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           12                           276 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           12                           276 
[1] "DEL PEAK  5(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                           25                           263 
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                           25                           263 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           32                           256 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           32                           256 
[1] "DEL PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE 
                            13                            275 
  DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE 
                            13                            275 
[1] "DEL PEAK  8(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           11                           277 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           11                           277 
[1] "DEL PEAK  9(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           26                           262 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           26                           262 
[1] "DEL PEAK 10(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            29                            259 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            29                            259 
[1] "DEL PEAK 11(6Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE 
                           32                           256 
  DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE 
                           32                           256 
[1] "DEL PEAK 12(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           40                           248 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           40                           248 
[1] "DEL PEAK 13(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE 
                            19                            269 
  DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE 
                            19                            269 
[1] "DEL PEAK 14(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            31                            257 
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            31                            257 
[1] "DEL PEAK 15(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE 
                            29                            259 
  DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE 
                            29                            259 
[1] "DEL PEAK 16(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            51                            237 
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            51                            237 
[1] "DEL PEAK 17(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE 
                            50                            238 
  DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE 
                            50                            238 
[1] "DEL PEAK 18(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE 
                            35                            253 
  DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE 
                            35                            253 
[1] "DEL PEAK 19(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE 
                            12                            276 
  DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE 
                            12                            276 
[1] "DEL PEAK 20(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                            23                            265 
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                            23                            265 
[1] "DEL PEAK 21(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE 
                             19                             269 
  DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE 
                             19                             269 
[1] "DEL PEAK 22(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE 
                            63                            225 
  DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE 
                            63                            225 
[1] "DEL PEAK 23(XP11.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE 
                           34                           254 
  DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE 
                           34                           254 
[1] "DEL PEAK 24(XQ28) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE 
                         28                         260 
  DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE 
                         28                         260 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 288 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 288 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(2P23.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        2      3     14     26
  AMP PEAK 1(2P23.2) WILD-TYPE    112     73     32     26
D1V1, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          2                          112
  CLUS_2                          3                           73
  CLUS_3                         14                           32
  CLUS_4                         26                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        5     16     21
  AMP PEAK 1(2P23.2) WILD-TYPE     77     55     98
D1V2, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          5                           77
  CLUS_2                         16                           55
  CLUS_3                         21                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       10     12     10
  AMP PEAK 1(2P23.2) WILD-TYPE     65     70     46
D1V3, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         10                           65
  CLUS_2                         12                           70
  CLUS_3                         10                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        7      8     15      2
  AMP PEAK 1(2P23.2) WILD-TYPE     32     58     50     41
D1V4, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          7                           32
  CLUS_2                          8                           58
  CLUS_3                         15                           50
  CLUS_4                          2                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        1     14     13     17
  AMP PEAK 1(2P23.2) WILD-TYPE     33     82     53     75
D1V5, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          1                           33
  CLUS_2                         14                           82
  CLUS_3                         13                           53
  CLUS_4                         17                           75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       18     19      8
  AMP PEAK 1(2P23.2) WILD-TYPE    100    104     39
D1V6, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         18                          100
  CLUS_2                         19                          104
  CLUS_3                          8                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       11     22     12
  AMP PEAK 1(2P23.2) WILD-TYPE     78     88     77
D1V7, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         11                           78
  CLUS_2                         22                           88
  CLUS_3                         12                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       14     17     14
  AMP PEAK 1(2P23.2) WILD-TYPE    106     63     74
D1V8, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         14                          106
  CLUS_2                         17                           63
  CLUS_3                         14                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        8     12     14
  AMP PEAK 1(2P23.2) WILD-TYPE     62     69     57
D1V9, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          8                           62
  CLUS_2                         12                           69
  CLUS_3                         14                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED       15     10      6      3
  AMP PEAK 1(2P23.2) WILD-TYPE     88     65      9     26
D1V10, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         15                           88
  CLUS_2                         10                           65
  CLUS_3                          6                            9
  CLUS_4                          3                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(2Q32.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        4      4     15     30
  AMP PEAK 2(2Q32.1) WILD-TYPE    110     72     31     22
D2V1, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          4                          110
  CLUS_2                          4                           72
  CLUS_3                         15                           31
  CLUS_4                         30                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED        8     18     24
  AMP PEAK 2(2Q32.1) WILD-TYPE     74     53     95
D2V2, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          8                           74
  CLUS_2                         18                           53
  CLUS_3                         24                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       13     15     12
  AMP PEAK 2(2Q32.1) WILD-TYPE     62     67     44
D2V3, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         13                           62
  CLUS_2                         15                           67
  CLUS_3                         12                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        9     10     17      4
  AMP PEAK 2(2Q32.1) WILD-TYPE     30     56     48     39
D2V4, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          9                           30
  CLUS_2                         10                           56
  CLUS_3                         17                           48
  CLUS_4                          4                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        3     16     14     20
  AMP PEAK 2(2Q32.1) WILD-TYPE     31     80     52     72
D2V5, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          3                           31
  CLUS_2                         16                           80
  CLUS_3                         14                           52
  CLUS_4                         20                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       23     22      8
  AMP PEAK 2(2Q32.1) WILD-TYPE     95    101     39
D2V6, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         23                           95
  CLUS_2                         22                          101
  CLUS_3                          8                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       14     25     14
  AMP PEAK 2(2Q32.1) WILD-TYPE     75     85     75
D2V7, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         14                           75
  CLUS_2                         25                           85
  CLUS_3                         14                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       19     19     15
  AMP PEAK 2(2Q32.1) WILD-TYPE    101     61     73
D2V8, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         19                          101
  CLUS_2                         19                           61
  CLUS_3                         15                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       12     15     14
  AMP PEAK 2(2Q32.1) WILD-TYPE     58     66     57
D2V9, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         12                           58
  CLUS_2                         15                           66
  CLUS_3                         14                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       19     14      5      3
  AMP PEAK 2(2Q32.1) WILD-TYPE     84     61     10     26
D2V10, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         19                           84
  CLUS_2                         14                           61
  CLUS_3                          5                           10
  CLUS_4                          3                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(3Q27.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       20     17     45     18
  AMP PEAK 3(3Q27.1) WILD-TYPE     94     59      1     34
D3V1, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         20                           94
  CLUS_2                         17                           59
  CLUS_3                         45                            1
  CLUS_4                         18                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       25     18     51
  AMP PEAK 3(3Q27.1) WILD-TYPE     57     53     68
D3V2, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         25                           57
  CLUS_2                         18                           53
  CLUS_3                         51                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       28     29     14
  AMP PEAK 3(3Q27.1) WILD-TYPE     47     53     42
D3V3, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         28                           47
  CLUS_2                         29                           53
  CLUS_3                         14                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       23     23     15     10
  AMP PEAK 3(3Q27.1) WILD-TYPE     16     43     50     33
D3V4, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         23                           16
  CLUS_2                         23                           43
  CLUS_3                         15                           50
  CLUS_4                         10                           33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       18     38     31     13
  AMP PEAK 3(3Q27.1) WILD-TYPE     16     58     35     79
D3V5, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         18                           16
  CLUS_2                         38                           58
  CLUS_3                         31                           35
  CLUS_4                         13                           79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       37     53     10
  AMP PEAK 3(3Q27.1) WILD-TYPE     81     70     37
D3V6, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         37                           81
  CLUS_2                         53                           70
  CLUS_3                         10                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       38     39     23
  AMP PEAK 3(3Q27.1) WILD-TYPE     51     71     66
D3V7, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         38                           51
  CLUS_2                         39                           71
  CLUS_3                         23                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       41     39     20
  AMP PEAK 3(3Q27.1) WILD-TYPE     79     41     68
D3V8, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         41                           79
  CLUS_2                         39                           41
  CLUS_3                         20                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       24     27     20
  AMP PEAK 3(3Q27.1) WILD-TYPE     46     54     51
D3V9, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         24                           46
  CLUS_2                         27                           54
  CLUS_3                         20                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       45     18      3      5
  AMP PEAK 3(3Q27.1) WILD-TYPE     58     57     12     24
D3V10, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         45                           58
  CLUS_2                         18                           57
  CLUS_3                          3                           12
  CLUS_4                          5                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(5Q35.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED       19      2      0     16
  AMP PEAK 4(5Q35.2) WILD-TYPE     95     74     46     36
D4V1, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         19                           95
  CLUS_2                          2                           74
  CLUS_3                          0                           46
  CLUS_4                         16                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       12     17      5
  AMP PEAK 4(5Q35.2) WILD-TYPE     70     54    114
D4V2, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         12                           70
  CLUS_2                         17                           54
  CLUS_3                          5                          114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       10      8     11
  AMP PEAK 4(5Q35.2) WILD-TYPE     65     74     45
D4V3, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         10                           65
  CLUS_2                          8                           74
  CLUS_3                         11                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED        5      8     11      5
  AMP PEAK 4(5Q35.2) WILD-TYPE     34     58     54     38
D4V4, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                          5                           34
  CLUS_2                          8                           58
  CLUS_3                         11                           54
  CLUS_4                          5                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED        4      4      9     20
  AMP PEAK 4(5Q35.2) WILD-TYPE     30     92     57     72
D4V5, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                          4                           30
  CLUS_2                          4                           92
  CLUS_3                          9                           57
  CLUS_4                         20                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       29      4      4
  AMP PEAK 4(5Q35.2) WILD-TYPE     89    119     43
D4V6, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         29                           89
  CLUS_2                          4                          119
  CLUS_3                          4                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       18     10      9
  AMP PEAK 4(5Q35.2) WILD-TYPE     71    100     80
D4V7, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         18                           71
  CLUS_2                         10                          100
  CLUS_3                          9                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       23      5      9
  AMP PEAK 4(5Q35.2) WILD-TYPE     97     75     79
D4V8, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         23                           97
  CLUS_2                          5                           75
  CLUS_3                          9                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       13      9     10
  AMP PEAK 4(5Q35.2) WILD-TYPE     57     72     61
D4V9, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         13                           57
  CLUS_2                          9                           72
  CLUS_3                         10                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED       16     15      0      1
  AMP PEAK 4(5Q35.2) WILD-TYPE     87     60     15     28
D4V10, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         16                           87
  CLUS_2                         15                           60
  CLUS_3                          0                           15
  CLUS_4                          1                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(7Q31.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       32     75     43     27
  AMP PEAK 5(7Q31.2) WILD-TYPE     82      1      3     25
D5V1, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         32                           82
  CLUS_2                         75                            1
  CLUS_3                         43                            3
  CLUS_4                         27                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       39     25    102
  AMP PEAK 5(7Q31.2) WILD-TYPE     43     46     17
D5V2, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         39                           43
  CLUS_2                         25                           46
  CLUS_3                        102                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       46     60     28
  AMP PEAK 5(7Q31.2) WILD-TYPE     29     22     28
D5V3, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         46                           29
  CLUS_2                         60                           22
  CLUS_3                         28                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       31     53     30     20
  AMP PEAK 5(7Q31.2) WILD-TYPE      8     13     35     23
D5V4, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         31                            8
  CLUS_2                         53                           13
  CLUS_3                         30                           35
  CLUS_4                         20                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       29     84     39     25
  AMP PEAK 5(7Q31.2) WILD-TYPE      5     12     27     67
D5V5, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         29                            5
  CLUS_2                         84                           12
  CLUS_3                         39                           27
  CLUS_4                         25                           67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       54    105     18
  AMP PEAK 5(7Q31.2) WILD-TYPE     64     18     29
D5V6, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         54                           64
  CLUS_2                        105                           18
  CLUS_3                         18                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       47     77     53
  AMP PEAK 5(7Q31.2) WILD-TYPE     42     33     36
D5V7, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         47                           42
  CLUS_2                         77                           33
  CLUS_3                         53                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       67     63     47
  AMP PEAK 5(7Q31.2) WILD-TYPE     53     17     41
D5V8, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         67                           53
  CLUS_2                         63                           17
  CLUS_3                         47                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       34     64     35
  AMP PEAK 5(7Q31.2) WILD-TYPE     36     17     36
D5V9, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         34                           36
  CLUS_2                         64                           17
  CLUS_3                         35                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       72     32      4     25
  AMP PEAK 5(7Q31.2) WILD-TYPE     31     43     11      4
D5V10, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         72                           31
  CLUS_2                         32                           43
  CLUS_3                          4                           11
  CLUS_4                         25                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(17Q25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       43     76     45     37
  AMP PEAK 6(17Q25.2) WILD-TYPE     71      0      1     15
D6V1, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          43                            71
  CLUS_2                          76                             0
  CLUS_3                          45                             1
  CLUS_4                          37                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       44     39    106
  AMP PEAK 6(17Q25.2) WILD-TYPE     38     32     13
D6V2, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          44                            38
  CLUS_2                          39                            32
  CLUS_3                         106                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       56     64     29
  AMP PEAK 6(17Q25.2) WILD-TYPE     19     18     27
D6V3, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          56                            19
  CLUS_2                          64                            18
  CLUS_3                          29                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       35     53     37     24
  AMP PEAK 6(17Q25.2) WILD-TYPE      4     13     28     19
D6V4, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          35                             4
  CLUS_2                          53                            13
  CLUS_3                          37                            28
  CLUS_4                          24                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       24     88     46     43
  AMP PEAK 6(17Q25.2) WILD-TYPE     10      8     20     49
D6V5, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          24                            10
  CLUS_2                          88                             8
  CLUS_3                          46                            20
  CLUS_4                          43                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       73    109     19
  AMP PEAK 6(17Q25.2) WILD-TYPE     45     14     28
D6V6, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          73                            45
  CLUS_2                         109                            14
  CLUS_3                          19                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       56     85     60
  AMP PEAK 6(17Q25.2) WILD-TYPE     33     25     29
D6V7, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          56                            33
  CLUS_2                          85                            25
  CLUS_3                          60                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       77     66     58
  AMP PEAK 6(17Q25.2) WILD-TYPE     43     14     30
D6V8, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          77                            43
  CLUS_2                          66                            14
  CLUS_3                          58                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       43     67     42
  AMP PEAK 6(17Q25.2) WILD-TYPE     27     14     29
D6V9, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          43                            27
  CLUS_2                          67                            14
  CLUS_3                          42                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       79     40      7     26
  AMP PEAK 6(17Q25.2) WILD-TYPE     24     35      8      3
D6V10, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          79                            24
  CLUS_2                          40                            35
  CLUS_3                           7                             8
  CLUS_4                          26                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(19P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        1     22      0      8
  AMP PEAK 7(19P13.2) WILD-TYPE    113     54     46     44
D7V1, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           1                           113
  CLUS_2                          22                            54
  CLUS_3                           0                            46
  CLUS_4                           8                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        4      3     20
  AMP PEAK 7(19P13.2) WILD-TYPE     78     68     99
D7V2, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                            78
  CLUS_2                           3                            68
  CLUS_3                          20                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        4     15      2
  AMP PEAK 7(19P13.2) WILD-TYPE     71     67     54
D7V3, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                            71
  CLUS_2                          15                            67
  CLUS_3                           2                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        1     13      7      0
  AMP PEAK 7(19P13.2) WILD-TYPE     38     53     58     43
D7V4, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                          13                            53
  CLUS_3                           7                            58
  CLUS_4                           0                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        1     21      2      7
  AMP PEAK 7(19P13.2) WILD-TYPE     33     75     64     85
D7V5, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                          21                            75
  CLUS_3                           2                            64
  CLUS_4                           7                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        4     20      7
  AMP PEAK 7(19P13.2) WILD-TYPE    114    103     40
D7V6, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                           114
  CLUS_2                          20                           103
  CLUS_3                           7                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        5     15     11
  AMP PEAK 7(19P13.2) WILD-TYPE     84     95     78
D7V7, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          15                            95
  CLUS_3                          11                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED       10     12      9
  AMP PEAK 7(19P13.2) WILD-TYPE    110     68     79
D7V8, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                          10                           110
  CLUS_2                          12                            68
  CLUS_3                           9                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        4     13      4
  AMP PEAK 7(19P13.2) WILD-TYPE     66     68     67
D7V9, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                          13                            68
  CLUS_3                           4                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        7      5      1      8
  AMP PEAK 7(19P13.2) WILD-TYPE     96     70     14     21
D7V10, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           7                            96
  CLUS_2                           5                            70
  CLUS_3                           1                            14
  CLUS_4                           8                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       21      0      2     32
  DEL PEAK  1(1P36.31) WILD-TYPE     93     76     44     20
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           21                             93
  CLUS_2                            0                             76
  CLUS_3                            2                             44
  CLUS_4                           32                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15     28      9
  DEL PEAK  1(1P36.31) WILD-TYPE     67     43    110
D8V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             67
  CLUS_2                           28                             43
  CLUS_3                            9                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       18     14     12
  DEL PEAK  1(1P36.31) WILD-TYPE     57     68     44
D8V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           18                             57
  CLUS_2                           14                             68
  CLUS_3                           12                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        6     10     20      8
  DEL PEAK  1(1P36.31) WILD-TYPE     33     56     45     35
D8V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           10                             56
  CLUS_3                           20                             45
  CLUS_4                            8                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        0      5     10     40
  DEL PEAK  1(1P36.31) WILD-TYPE     34     91     56     52
D8V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            5                             91
  CLUS_3                           10                             56
  CLUS_4                           40                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       28      8     19
  DEL PEAK  1(1P36.31) WILD-TYPE     90    115     28
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           28                             90
  CLUS_2                            8                            115
  CLUS_3                           19                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       16     23     16
  DEL PEAK  1(1P36.31) WILD-TYPE     73     87     73
D8V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           16                             73
  CLUS_2                           23                             87
  CLUS_3                           16                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       24     16     15
  DEL PEAK  1(1P36.31) WILD-TYPE     96     64     73
D8V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             96
  CLUS_2                           16                             64
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       13      8     19
  DEL PEAK  1(1P36.31) WILD-TYPE     57     73     52
D8V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                            8                             73
  CLUS_3                           19                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       16     19      5      0
  DEL PEAK  1(1P36.31) WILD-TYPE     87     56     10     29
D8V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           16                             87
  CLUS_2                           19                             56
  CLUS_3                            5                             10
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  2(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        5      0      0      3
  DEL PEAK  2(2P12) WILD-TYPE    109     76     46     49
D9V1, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         5                         109
  CLUS_2                         0                          76
  CLUS_3                         0                          46
  CLUS_4                         3                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        3      5      0
  DEL PEAK  2(2P12) WILD-TYPE     79     66    119
D9V2, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         3                          79
  CLUS_2                         5                          66
  CLUS_3                         0                         119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        0      4      2
  DEL PEAK  2(2P12) WILD-TYPE     75     78     54
D9V3, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          75
  CLUS_2                         4                          78
  CLUS_3                         2                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        0      2      2      2
  DEL PEAK  2(2P12) WILD-TYPE     39     64     63     41
D9V4, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          39
  CLUS_2                         2                          64
  CLUS_3                         2                          63
  CLUS_4                         2                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        1      0      0      7
  DEL PEAK  2(2P12) WILD-TYPE     33     96     66     85
D9V5, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         1                          33
  CLUS_2                         0                          96
  CLUS_3                         0                          66
  CLUS_4                         7                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        6      1      1
  DEL PEAK  2(2P12) WILD-TYPE    112    122     46
D9V6, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         6                         112
  CLUS_2                         1                         122
  CLUS_3                         1                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        5      2      1
  DEL PEAK  2(2P12) WILD-TYPE     84    108     88
D9V7, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         5                          84
  CLUS_2                         2                         108
  CLUS_3                         1                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        6      1      1
  DEL PEAK  2(2P12) WILD-TYPE    114     79     87
D9V8, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         6                         114
  CLUS_2                         1                          79
  CLUS_3                         1                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        2      1      1
  DEL PEAK  2(2P12) WILD-TYPE     68     80     70
D9V9, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         2                          68
  CLUS_2                         1                          80
  CLUS_3                         1                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        2      2      0      0
  DEL PEAK  2(2P12) WILD-TYPE    101     73     15     29
D9V10, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         2                         101
  CLUS_2                         2                          73
  CLUS_3                         0                          15
  CLUS_4                         0                          29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        4      0      0      6
  DEL PEAK  3(2Q22.1) WILD-TYPE    110     76     46     46
D10V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                           110
  CLUS_2                           0                            76
  CLUS_3                           0                            46
  CLUS_4                           6                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        4      5      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     78     66    119
D10V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            78
  CLUS_2                           5                            66
  CLUS_3                           0                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      0      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     73     82     51
D10V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                           0                            82
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        2      1      2      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     37     65     63     41
D10V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           1                            65
  CLUS_3                           2                            63
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        0      0      0     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     34     96     66     82
D10V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           0                            96
  CLUS_3                           0                            66
  CLUS_4                          10                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        7      0      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    111    123     44
D10V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                           111
  CLUS_2                           0                           123
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      5      3
  DEL PEAK  3(2Q22.1) WILD-TYPE     87    105     86
D10V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            87
  CLUS_2                           5                           105
  CLUS_3                           3                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        4      3      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    116     77     85
D10V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                           116
  CLUS_2                           3                            77
  CLUS_3                           3                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3      1      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     67     80     66
D10V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           1                            80
  CLUS_3                           5                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        4      4      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     99     71     14     29
D10V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            99
  CLUS_2                           4                            71
  CLUS_3                           1                            14
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        7      1      0      4
  DEL PEAK  4(2Q37.3) WILD-TYPE    107     75     46     48
D11V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                           107
  CLUS_2                           1                            75
  CLUS_3                           0                            46
  CLUS_4                           4                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      6      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     78     65    119
D11V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            78
  CLUS_2                           6                            65
  CLUS_3                           0                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0      1      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     75     81     49
D11V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            75
  CLUS_2                           1                            81
  CLUS_3                           7                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      2      2      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     39     64     63     39
D11V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           2                            64
  CLUS_3                           2                            63
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      1      2      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     34     95     64     83
D11V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           1                            95
  CLUS_3                           2                            64
  CLUS_4                           9                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        9      0      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    109    123     44
D11V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                           109
  CLUS_2                           0                           123
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      3      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     82    107     87
D11V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                           3                           107
  CLUS_3                           2                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      1      4
  DEL PEAK  4(2Q37.3) WILD-TYPE    113     79     84
D11V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                           113
  CLUS_2                           1                            79
  CLUS_3                           4                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     63     80     68
D11V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                            63
  CLUS_2                           1                            80
  CLUS_3                           3                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        6      3      2      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     97     72     13     29
D11V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            97
  CLUS_2                           3                            72
  CLUS_3                           2                            13
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  5(3P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        6      0      0     19
  DEL PEAK  5(3P22.1) WILD-TYPE    108     76     46     33
D12V1, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           6                           108
  CLUS_2                           0                            76
  CLUS_3                           0                            46
  CLUS_4                          19                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED        5     18      1
  DEL PEAK  5(3P22.1) WILD-TYPE     77     53    118
D12V2, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           5                            77
  CLUS_2                          18                            53
  CLUS_3                           1                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      6      4
  DEL PEAK  5(3P22.1) WILD-TYPE     65     76     52
D12V3, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                           6                            76
  CLUS_3                           4                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        3      4     12      1
  DEL PEAK  5(3P22.1) WILD-TYPE     36     62     53     42
D12V4, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           4                            62
  CLUS_3                          12                            53
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        0      0      4     21
  DEL PEAK  5(3P22.1) WILD-TYPE     34     96     62     71
D12V5, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           0                            96
  CLUS_3                           4                            62
  CLUS_4                          21                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       21      0      4
  DEL PEAK  5(3P22.1) WILD-TYPE     97    123     43
D12V6, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          21                            97
  CLUS_2                           0                           123
  CLUS_3                           4                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      5     10
  DEL PEAK  5(3P22.1) WILD-TYPE     79    105     79
D12V7, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            79
  CLUS_2                           5                           105
  CLUS_3                          10                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       13      2     10
  DEL PEAK  5(3P22.1) WILD-TYPE    107     78     78
D12V8, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          13                           107
  CLUS_2                           2                            78
  CLUS_3                          10                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      3     11
  DEL PEAK  5(3P22.1) WILD-TYPE     60     78     60
D12V9, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           3                            78
  CLUS_3                          11                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        5     18      1      0
  DEL PEAK  5(3P22.1) WILD-TYPE     98     57     14     29
D12V10, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           5                            98
  CLUS_2                          18                            57
  CLUS_3                           1                            14
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        8      1      1     22
  DEL PEAK  6(4Q34.3) WILD-TYPE    106     75     45     30
D13V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           8                           106
  CLUS_2                           1                            75
  CLUS_3                           1                            45
  CLUS_4                          22                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        6     22      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     76     49    117
D13V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           6                            76
  CLUS_2                          22                            49
  CLUS_3                           2                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       11      6      8
  DEL PEAK  6(4Q34.3) WILD-TYPE     64     76     48
D13V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            64
  CLUS_2                           6                            76
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        2      4     15      4
  DEL PEAK  6(4Q34.3) WILD-TYPE     37     62     50     39
D13V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           4                            62
  CLUS_3                          15                            50
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        0      1      3     28
  DEL PEAK  6(4Q34.3) WILD-TYPE     34     95     63     64
D13V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           1                            95
  CLUS_3                           3                            63
  CLUS_4                          28                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       18      2     12
  DEL PEAK  6(4Q34.3) WILD-TYPE    100    121     35
D13V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          18                           100
  CLUS_2                           2                           121
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        9      9     14
  DEL PEAK  6(4Q34.3) WILD-TYPE     80    101     75
D13V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           9                            80
  CLUS_2                           9                           101
  CLUS_3                          14                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       14      6     12
  DEL PEAK  6(4Q34.3) WILD-TYPE    106     74     76
D13V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                           106
  CLUS_2                           6                            74
  CLUS_3                          12                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       10      3     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     60     78     58
D13V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           3                            78
  CLUS_3                          13                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        7     11      8      0
  DEL PEAK  6(4Q34.3) WILD-TYPE     96     64      7     29
D13V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            96
  CLUS_2                          11                            64
  CLUS_3                           8                             7
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        8      1      1      3
  DEL PEAK  7(5P15.33) WILD-TYPE    106     75     45     49
D14V1, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            8                            106
  CLUS_2                            1                             75
  CLUS_3                            1                             45
  CLUS_4                            3                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        2      9      2
  DEL PEAK  7(5P15.33) WILD-TYPE     80     62    117
D14V2, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            2                             80
  CLUS_2                            9                             62
  CLUS_3                            2                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        5      3      3
  DEL PEAK  7(5P15.33) WILD-TYPE     70     79     53
D14V3, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            5                             70
  CLUS_2                            3                             79
  CLUS_3                            3                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        1      3      7      0
  DEL PEAK  7(5P15.33) WILD-TYPE     38     63     58     43
D14V4, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            3                             63
  CLUS_3                            7                             58
  CLUS_4                            0                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        0      1      4      8
  DEL PEAK  7(5P15.33) WILD-TYPE     34     95     62     84
D14V5, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            1                             95
  CLUS_3                            4                             62
  CLUS_4                            8                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        5      1      7
  DEL PEAK  7(5P15.33) WILD-TYPE    113    122     40
D14V6, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            5                            113
  CLUS_2                            1                            122
  CLUS_3                            7                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        4      3      6
  DEL PEAK  7(5P15.33) WILD-TYPE     85    107     83
D14V7, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            4                             85
  CLUS_2                            3                            107
  CLUS_3                            6                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        4      2      7
  DEL PEAK  7(5P15.33) WILD-TYPE    116     78     81
D14V8, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            4                            116
  CLUS_2                            2                             78
  CLUS_3                            7                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        2      3      6
  DEL PEAK  7(5P15.33) WILD-TYPE     68     78     65
D14V9, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            2                             68
  CLUS_2                            3                             78
  CLUS_3                            6                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        2      4      4      1
  DEL PEAK  7(5P15.33) WILD-TYPE    101     71     11     28
D14V10, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            2                            101
  CLUS_2                            4                             71
  CLUS_3                            4                             11
  CLUS_4                            1                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  8(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        3      1      1      6
  DEL PEAK  8(5Q35.2) WILD-TYPE    111     75     45     46
D15V1, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           3                           111
  CLUS_2                           1                            75
  CLUS_3                           1                            45
  CLUS_4                           6                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        2      8      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     80     63    119
D15V2, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           2                            80
  CLUS_2                           8                            63
  CLUS_3                           0                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        5      0      3
  DEL PEAK  8(5Q35.2) WILD-TYPE     70     82     53
D15V3, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           5                            70
  CLUS_2                           0                            82
  CLUS_3                           3                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        0      0      8      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     39     66     57     43
D15V4, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           0                            66
  CLUS_3                           8                            57
  CLUS_4                           0                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        0      0      1     10
  DEL PEAK  8(5Q35.2) WILD-TYPE     34     96     65     82
D15V5, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           0                            96
  CLUS_3                           1                            65
  CLUS_4                          10                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        3      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE    115    123     39
D15V6, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           3                           115
  CLUS_2                           0                           123
  CLUS_3                           8                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        0      3      8
  DEL PEAK  8(5Q35.2) WILD-TYPE     89    107     81
D15V7, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            89
  CLUS_2                           3                           107
  CLUS_3                           8                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        2      0      9
  DEL PEAK  8(5Q35.2) WILD-TYPE    118     80     79
D15V8, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           2                           118
  CLUS_2                           0                            80
  CLUS_3                           9                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        2      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE     68     81     63
D15V9, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           2                            68
  CLUS_2                           0                            81
  CLUS_3                           8                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        0      2      8      0
  DEL PEAK  8(5Q35.2) WILD-TYPE    103     73      7     29
D15V10, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                           103
  CLUS_2                           2                            73
  CLUS_3                           8                             7
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  9(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        8      0      1     17
  DEL PEAK  9(6P12.3) WILD-TYPE    106     76     45     35
D16V1, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           8                           106
  CLUS_2                           0                            76
  CLUS_3                           1                            45
  CLUS_4                          17                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        5     15      5
  DEL PEAK  9(6P12.3) WILD-TYPE     77     56    114
D16V2, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           5                            77
  CLUS_2                          15                            56
  CLUS_3                           5                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        7      8      5
  DEL PEAK  9(6P12.3) WILD-TYPE     68     74     51
D16V3, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           7                            68
  CLUS_2                           8                            74
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        2      6     10      2
  DEL PEAK  9(6P12.3) WILD-TYPE     37     60     55     41
D16V4, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           6                            60
  CLUS_3                          10                            55
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        0      4      5     17
  DEL PEAK  9(6P12.3) WILD-TYPE     34     92     61     75
D16V5, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           4                            92
  CLUS_3                           5                            61
  CLUS_4                          17                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED       12      4     10
  DEL PEAK  9(6P12.3) WILD-TYPE    106    119     37
D16V6, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                          12                           106
  CLUS_2                           4                           119
  CLUS_3                          10                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        5     15      6
  DEL PEAK  9(6P12.3) WILD-TYPE     84     95     83
D16V7, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          15                            95
  CLUS_3                           6                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED       11      9      6
  DEL PEAK  9(6P12.3) WILD-TYPE    109     71     82
D16V8, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                          11                           109
  CLUS_2                           9                            71
  CLUS_3                           6                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        4      5      9
  DEL PEAK  9(6P12.3) WILD-TYPE     66     76     62
D16V9, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           5                            76
  CLUS_3                           9                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        8      8      2      0
  DEL PEAK  9(6P12.3) WILD-TYPE     95     67     13     29
D16V10, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           8                            95
  CLUS_2                           8                            67
  CLUS_3                           2                            13
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 10(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        8      0      1     20
  DEL PEAK 10(6Q22.31) WILD-TYPE    106     76     45     32
D17V1, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            8                            106
  CLUS_2                            0                             76
  CLUS_3                            1                             45
  CLUS_4                           20                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        9     15      4
  DEL PEAK 10(6Q22.31) WILD-TYPE     73     56    115
D17V2, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            9                             73
  CLUS_2                           15                             56
  CLUS_3                            4                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        9      8      7
  DEL PEAK 10(6Q22.31) WILD-TYPE     66     74     49
D17V3, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            9                             66
  CLUS_2                            8                             74
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        3      5     15      1
  DEL PEAK 10(6Q22.31) WILD-TYPE     36     61     50     42
D17V4, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            5                             61
  CLUS_3                           15                             50
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        1      3      5     20
  DEL PEAK 10(6Q22.31) WILD-TYPE     33     93     61     72
D17V5, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                            3                             93
  CLUS_3                            5                             61
  CLUS_4                           20                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       13      3     13
  DEL PEAK 10(6Q22.31) WILD-TYPE    105    120     34
D17V6, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           13                            105
  CLUS_2                            3                            120
  CLUS_3                           13                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        6     14      9
  DEL PEAK 10(6Q22.31) WILD-TYPE     83     96     80
D17V7, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           14                             96
  CLUS_3                            9                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       10      9     10
  DEL PEAK 10(6Q22.31) WILD-TYPE    110     71     78
D17V8, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           10                            110
  CLUS_2                            9                             71
  CLUS_3                           10                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        3      5     13
  DEL PEAK 10(6Q22.31) WILD-TYPE     67     76     58
D17V9, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            3                             67
  CLUS_2                            5                             76
  CLUS_3                           13                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        8     11      2      0
  DEL PEAK 10(6Q22.31) WILD-TYPE     95     64     13     29
D17V10, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            8                             95
  CLUS_2                           11                             64
  CLUS_3                            2                             13
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 11(6Q25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED        7      0      1     24
  DEL PEAK 11(6Q25.3) WILD-TYPE    107     76     45     28
D18V1, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           7                           107
  CLUS_2                           0                            76
  CLUS_3                           1                            45
  CLUS_4                          24                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        8     19      4
  DEL PEAK 11(6Q25.3) WILD-TYPE     74     52    115
D18V2, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           8                            74
  CLUS_2                          19                            52
  CLUS_3                           4                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED       10      8      8
  DEL PEAK 11(6Q25.3) WILD-TYPE     65     74     48
D18V3, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                           8                            74
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED        4      5     15      2
  DEL PEAK 11(6Q25.3) WILD-TYPE     35     61     50     41
D18V4, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           5                            61
  CLUS_3                          15                            50
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED        0      3      6     23
  DEL PEAK 11(6Q25.3) WILD-TYPE     34     93     60     69
D18V5, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           3                            93
  CLUS_3                           6                            60
  CLUS_4                          23                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED       17      3     12
  DEL PEAK 11(6Q25.3) WILD-TYPE    101    120     35
D18V6, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                          17                           101
  CLUS_2                           3                           120
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        7     16      9
  DEL PEAK 11(6Q25.3) WILD-TYPE     82     94     80
D18V7, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                          16                            94
  CLUS_3                           9                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED       13      9     10
  DEL PEAK 11(6Q25.3) WILD-TYPE    107     71     78
D18V8, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                          13                           107
  CLUS_2                           9                            71
  CLUS_3                          10                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        4      6     13
  DEL PEAK 11(6Q25.3) WILD-TYPE     66     75     58
D18V9, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           6                            75
  CLUS_3                          13                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED       10     11      2      0
  DEL PEAK 11(6Q25.3) WILD-TYPE     93     64     13     29
D18V10, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                          10                            93
  CLUS_2                          11                            64
  CLUS_3                           2                            13
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 12(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED       11      2      1     26
  DEL PEAK 12(9P21.3) WILD-TYPE    103     74     45     26
D19V1, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          11                           103
  CLUS_2                           2                            74
  CLUS_3                           1                            45
  CLUS_4                          26                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED       12     22      3
  DEL PEAK 12(9P21.3) WILD-TYPE     70     49    116
D19V2, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          12                            70
  CLUS_2                          22                            49
  CLUS_3                           3                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED       14      9      7
  DEL PEAK 12(9P21.3) WILD-TYPE     61     73     49
D19V3, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          14                            61
  CLUS_2                           9                            73
  CLUS_3                           7                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED        3      5     19      3
  DEL PEAK 12(9P21.3) WILD-TYPE     36     61     46     40
D19V4, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           5                            61
  CLUS_3                          19                            46
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED        1      2      4     33
  DEL PEAK 12(9P21.3) WILD-TYPE     33     94     62     59
D19V5, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                           2                            94
  CLUS_3                           4                            62
  CLUS_4                          33                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED       20      0     20
  DEL PEAK 12(9P21.3) WILD-TYPE     98    123     27
D19V6, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          20                            98
  CLUS_2                           0                           123
  CLUS_3                          20                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED        3     16     21
  DEL PEAK 12(9P21.3) WILD-TYPE     86     94     68
D19V7, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           3                            86
  CLUS_2                          16                            94
  CLUS_3                          21                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED       10     10     20
  DEL PEAK 12(9P21.3) WILD-TYPE    110     70     68
D19V8, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          10                           110
  CLUS_2                          10                            70
  CLUS_3                          20                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED        8      4     21
  DEL PEAK 12(9P21.3) WILD-TYPE     62     77     50
D19V9, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           8                            62
  CLUS_2                           4                            77
  CLUS_3                          21                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED        8     19      6      0
  DEL PEAK 12(9P21.3) WILD-TYPE     95     56      9     29
D19V10, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           8                            95
  CLUS_2                          19                            56
  CLUS_3                           6                             9
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 13(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        5      0      0     14
  DEL PEAK 13(10Q21.1) WILD-TYPE    109     76     46     38
D20V1, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            5                            109
  CLUS_2                            0                             76
  CLUS_3                            0                             46
  CLUS_4                           14                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        2     15      2
  DEL PEAK 13(10Q21.1) WILD-TYPE     80     56    117
D20V2, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            2                             80
  CLUS_2                           15                             56
  CLUS_3                            2                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        7      5      4
  DEL PEAK 13(10Q21.1) WILD-TYPE     68     77     52
D20V3, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            7                             68
  CLUS_2                            5                             77
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        1      4     10      1
  DEL PEAK 13(10Q21.1) WILD-TYPE     38     62     55     42
D20V4, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            4                             62
  CLUS_3                           10                             55
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        0      1      3     15
  DEL PEAK 13(10Q21.1) WILD-TYPE     34     95     63     77
D20V5, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            1                             95
  CLUS_3                            3                             63
  CLUS_4                           15                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED       13      1      5
  DEL PEAK 13(10Q21.1) WILD-TYPE    105    122     42
D20V6, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                           13                            105
  CLUS_2                            1                            122
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        6      6      7
  DEL PEAK 13(10Q21.1) WILD-TYPE     83    104     82
D20V7, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                            6                            104
  CLUS_3                            7                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        9      4      6
  DEL PEAK 13(10Q21.1) WILD-TYPE    111     76     82
D20V8, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            9                            111
  CLUS_2                            4                             76
  CLUS_3                            6                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        3      2      9
  DEL PEAK 13(10Q21.1) WILD-TYPE     67     79     62
D20V9, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            3                             67
  CLUS_2                            2                             79
  CLUS_3                            9                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        3      9      2      0
  DEL PEAK 13(10Q21.1) WILD-TYPE    100     66     13     29
D20V10, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            3                            100
  CLUS_2                            9                             66
  CLUS_3                            2                             13
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 14(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        8      4      1     18
  DEL PEAK 14(11Q22.3) WILD-TYPE    106     72     45     34
D21V1, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            8                            106
  CLUS_2                            4                             72
  CLUS_3                            1                             45
  CLUS_4                           18                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        8     17      5
  DEL PEAK 14(11Q22.3) WILD-TYPE     74     54    114
D21V2, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            8                             74
  CLUS_2                           17                             54
  CLUS_3                            5                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED       11      8      6
  DEL PEAK 14(11Q22.3) WILD-TYPE     64     74     50
D21V3, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            8                             74
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        4      4     13      4
  DEL PEAK 14(11Q22.3) WILD-TYPE     35     62     52     39
D21V4, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            4                             62
  CLUS_3                           13                             52
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        1      5      3     22
  DEL PEAK 14(11Q22.3) WILD-TYPE     33     91     63     70
D21V5, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                            5                             91
  CLUS_3                            3                             63
  CLUS_4                           22                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED       17      5      9
  DEL PEAK 14(11Q22.3) WILD-TYPE    101    118     38
D21V6, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            5                            118
  CLUS_3                            9                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        6     12     13
  DEL PEAK 14(11Q22.3) WILD-TYPE     83     98     76
D21V7, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           12                             98
  CLUS_3                           13                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED       13      6     12
  DEL PEAK 14(11Q22.3) WILD-TYPE    107     74     76
D21V8, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                           13                            107
  CLUS_2                            6                             74
  CLUS_3                           12                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        6      3     15
  DEL PEAK 14(11Q22.3) WILD-TYPE     64     78     56
D21V9, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            3                             78
  CLUS_3                           15                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        7     15      2      0
  DEL PEAK 14(11Q22.3) WILD-TYPE     96     60     13     29
D21V10, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            7                             96
  CLUS_2                           15                             60
  CLUS_3                            2                             13
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 15(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        6      4      0     19
  DEL PEAK 15(11Q23.3) WILD-TYPE    108     72     46     33
D22V1, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                            108
  CLUS_2                            4                             72
  CLUS_3                            0                             46
  CLUS_4                           19                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        7     17      4
  DEL PEAK 15(11Q23.3) WILD-TYPE     75     54    115
D22V2, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            7                             75
  CLUS_2                           17                             54
  CLUS_3                            4                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED       11      6      6
  DEL PEAK 15(11Q23.3) WILD-TYPE     64     76     50
D22V3, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            6                             76
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        3      3     13      4
  DEL PEAK 15(11Q23.3) WILD-TYPE     36     63     52     39
D22V4, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            3                             63
  CLUS_3                           13                             52
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        1      4      3     21
  DEL PEAK 15(11Q23.3) WILD-TYPE     33     92     63     71
D22V5, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                            4                             92
  CLUS_3                            3                             63
  CLUS_4                           21                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED       17      4      8
  DEL PEAK 15(11Q23.3) WILD-TYPE    101    119     39
D22V6, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            4                            119
  CLUS_3                            8                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        6     11     12
  DEL PEAK 15(11Q23.3) WILD-TYPE     83     99     77
D22V7, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           11                             99
  CLUS_3                           12                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED       13      5     11
  DEL PEAK 15(11Q23.3) WILD-TYPE    107     75     77
D22V8, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                           13                            107
  CLUS_2                            5                             75
  CLUS_3                           11                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        6      3     14
  DEL PEAK 15(11Q23.3) WILD-TYPE     64     78     57
D22V9, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            3                             78
  CLUS_3                           14                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        7     14      2      0
  DEL PEAK 15(11Q23.3) WILD-TYPE     96     61     13     29
D22V10, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            7                             96
  CLUS_2                           14                             61
  CLUS_3                            2                             13
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 16(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED       20      1      2     28
  DEL PEAK 16(14Q11.2) WILD-TYPE     94     75     44     24
D23V1, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           20                             94
  CLUS_2                            1                             75
  CLUS_3                            2                             44
  CLUS_4                           28                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       17     19     10
  DEL PEAK 16(14Q11.2) WILD-TYPE     65     52    109
D23V2, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           17                             65
  CLUS_2                           19                             52
  CLUS_3                           10                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       19     10      7
  DEL PEAK 16(14Q11.2) WILD-TYPE     56     72     49
D23V3, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           10                             72
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED        6      7     20      3
  DEL PEAK 16(14Q11.2) WILD-TYPE     33     59     45     40
D23V4, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            7                             59
  CLUS_3                           20                             45
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED        4      5     13     29
  DEL PEAK 16(14Q11.2) WILD-TYPE     30     91     53     63
D23V5, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                            5                             91
  CLUS_3                           13                             53
  CLUS_4                           29                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       24      8     19
  DEL PEAK 16(14Q11.2) WILD-TYPE     94    115     28
D23V6, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           24                             94
  CLUS_2                            8                            115
  CLUS_3                           19                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       13     19     19
  DEL PEAK 16(14Q11.2) WILD-TYPE     76     91     70
D23V7, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           19                             91
  CLUS_3                           19                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       21     15     15
  DEL PEAK 16(14Q11.2) WILD-TYPE     99     65     73
D23V8, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           21                             99
  CLUS_2                           15                             65
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       11      8     19
  DEL PEAK 16(14Q11.2) WILD-TYPE     59     73     52
D23V9, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                            8                             73
  CLUS_3                           19                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED       12     20      4      2
  DEL PEAK 16(14Q11.2) WILD-TYPE     91     55     11     27
D23V10, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           12                             91
  CLUS_2                           20                             55
  CLUS_3                            4                             11
  CLUS_4                            2                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 17(14Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED       21      0      1     28
  DEL PEAK 17(14Q24.2) WILD-TYPE     93     76     45     24
D24V1, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           21                             93
  CLUS_2                            0                             76
  CLUS_3                            1                             45
  CLUS_4                           28                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       18     20      8
  DEL PEAK 17(14Q24.2) WILD-TYPE     64     51    111
D24V2, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           18                             64
  CLUS_2                           20                             51
  CLUS_3                            8                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       20      9      7
  DEL PEAK 17(14Q24.2) WILD-TYPE     55     73     49
D24V3, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                            9                             73
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED        7      6     20      3
  DEL PEAK 17(14Q24.2) WILD-TYPE     32     60     45     40
D24V4, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            6                             60
  CLUS_3                           20                             45
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED        4      4     11     31
  DEL PEAK 17(14Q24.2) WILD-TYPE     30     92     55     61
D24V5, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                            4                             92
  CLUS_3                           11                             55
  CLUS_4                           31                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       24      7     19
  DEL PEAK 17(14Q24.2) WILD-TYPE     94    116     28
D24V6, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           24                             94
  CLUS_2                            7                            116
  CLUS_3                           19                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       13     18     19
  DEL PEAK 17(14Q24.2) WILD-TYPE     76     92     70
D24V7, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           18                             92
  CLUS_3                           19                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       21     14     15
  DEL PEAK 17(14Q24.2) WILD-TYPE     99     66     73
D24V8, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           21                             99
  CLUS_2                           14                             66
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       12      7     20
  DEL PEAK 17(14Q24.2) WILD-TYPE     58     74     51
D24V9, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           12                             58
  CLUS_2                            7                             74
  CLUS_3                           20                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED       13     21      4      1
  DEL PEAK 17(14Q24.2) WILD-TYPE     90     54     11     28
D24V10, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           13                             90
  CLUS_2                           21                             54
  CLUS_3                            4                             11
  CLUS_4                            1                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 18(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED       12      0      3     20
  DEL PEAK 18(15Q13.3) WILD-TYPE    102     76     43     32
D25V1, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           12                            102
  CLUS_2                            0                             76
  CLUS_3                            3                             43
  CLUS_4                           20                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED       11     17      5
  DEL PEAK 18(15Q13.3) WILD-TYPE     71     54    114
D25V2, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           11                             71
  CLUS_2                           17                             54
  CLUS_3                            5                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED       15      7      7
  DEL PEAK 18(15Q13.3) WILD-TYPE     60     75     49
D25V3, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           15                             60
  CLUS_2                            7                             75
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED        4      5     16      4
  DEL PEAK 18(15Q13.3) WILD-TYPE     35     61     49     39
D25V4, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            5                             61
  CLUS_3                           16                             49
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED        1      3      7     24
  DEL PEAK 18(15Q13.3) WILD-TYPE     33     93     59     68
D25V5, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                            3                             93
  CLUS_3                            7                             59
  CLUS_4                           24                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED       16      4     15
  DEL PEAK 18(15Q13.3) WILD-TYPE    102    119     32
D25V6, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           16                            102
  CLUS_2                            4                            119
  CLUS_3                           15                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED        6     13     16
  DEL PEAK 18(15Q13.3) WILD-TYPE     83     97     73
D25V7, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           13                             97
  CLUS_3                           16                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED        9     12     14
  DEL PEAK 18(15Q13.3) WILD-TYPE    111     68     74
D25V8, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            9                            111
  CLUS_2                           12                             68
  CLUS_3                           14                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED        8      6     15
  DEL PEAK 18(15Q13.3) WILD-TYPE     62     75     56
D25V9, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            8                             62
  CLUS_2                            6                             75
  CLUS_3                           15                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED       12     11      6      0
  DEL PEAK 18(15Q13.3) WILD-TYPE     91     64      9     29
D25V10, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           12                             91
  CLUS_2                           11                             64
  CLUS_3                            6                              9
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 19(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        4      0      0      8
  DEL PEAK 19(16Q24.1) WILD-TYPE    110     76     46     44
D26V1, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            4                            110
  CLUS_2                            0                             76
  CLUS_3                            0                             46
  CLUS_4                            8                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        3      9      0
  DEL PEAK 19(16Q24.1) WILD-TYPE     79     62    119
D26V2, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            3                             79
  CLUS_2                            9                             62
  CLUS_3                            0                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        3      2      5
  DEL PEAK 19(16Q24.1) WILD-TYPE     72     80     51
D26V3, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                            2                             80
  CLUS_3                            5                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        1      1      7      1
  DEL PEAK 19(16Q24.1) WILD-TYPE     38     65     58     42
D26V4, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            1                             65
  CLUS_3                            7                             58
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        0      0      3      9
  DEL PEAK 19(16Q24.1) WILD-TYPE     34     96     63     83
D26V5, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            0                             96
  CLUS_3                            3                             63
  CLUS_4                            9                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        8      0      4
  DEL PEAK 19(16Q24.1) WILD-TYPE    110    123     43
D26V6, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            8                            110
  CLUS_2                            0                            123
  CLUS_3                            4                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        4      4      4
  DEL PEAK 19(16Q24.1) WILD-TYPE     85    106     85
D26V7, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            4                             85
  CLUS_2                            4                            106
  CLUS_3                            4                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        6      1      5
  DEL PEAK 19(16Q24.1) WILD-TYPE    114     79     83
D26V8, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            6                            114
  CLUS_2                            1                             79
  CLUS_3                            5                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        5      0      6
  DEL PEAK 19(16Q24.1) WILD-TYPE     65     81     65
D26V9, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            5                             65
  CLUS_2                            0                             81
  CLUS_3                            6                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        3      5      3      0
  DEL PEAK 19(16Q24.1) WILD-TYPE    100     70     12     29
D26V10, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            3                            100
  CLUS_2                            5                             70
  CLUS_3                            3                             12
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 20(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        4      4      1     14
  DEL PEAK 20(19P13.3) WILD-TYPE    110     72     45     38
D27V1, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            4                            110
  CLUS_2                            4                             72
  CLUS_3                            1                             45
  CLUS_4                           14                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        4     12      6
  DEL PEAK 20(19P13.3) WILD-TYPE     78     59    113
D27V2, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            4                             78
  CLUS_2                           12                             59
  CLUS_3                            6                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        6      6      3
  DEL PEAK 20(19P13.3) WILD-TYPE     69     76     53
D27V3, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            6                             69
  CLUS_2                            6                             76
  CLUS_3                            3                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        3      4      6      2
  DEL PEAK 20(19P13.3) WILD-TYPE     36     62     59     41
D27V4, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            4                             62
  CLUS_3                            6                             59
  CLUS_4                            2                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        0      3      8     12
  DEL PEAK 20(19P13.3) WILD-TYPE     34     93     58     80
D27V5, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            3                             93
  CLUS_3                            8                             58
  CLUS_4                           12                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED       17      4      2
  DEL PEAK 20(19P13.3) WILD-TYPE    101    119     45
D27V6, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            4                            119
  CLUS_3                            2                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        7      6     10
  DEL PEAK 20(19P13.3) WILD-TYPE     82    104     79
D27V7, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            7                             82
  CLUS_2                            6                            104
  CLUS_3                           10                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED       13      3      7
  DEL PEAK 20(19P13.3) WILD-TYPE    107     77     81
D27V8, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                           13                            107
  CLUS_2                            3                             77
  CLUS_3                            7                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        5      4     11
  DEL PEAK 20(19P13.3) WILD-TYPE     65     77     60
D27V9, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            5                             65
  CLUS_2                            4                             77
  CLUS_3                           11                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        7     13      0      0
  DEL PEAK 20(19P13.3) WILD-TYPE     96     62     15     29
D27V10, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            7                             96
  CLUS_2                           13                             62
  CLUS_3                            0                             15
  CLUS_4                            0                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 21(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        2      3      2     12
  DEL PEAK 21(19Q13.42) WILD-TYPE    112     73     44     40
D28V1, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             2                             112
  CLUS_2                             3                              73
  CLUS_3                             2                              44
  CLUS_4                            12                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        5     10      4
  DEL PEAK 21(19Q13.42) WILD-TYPE     77     61    115
D28V2, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             5                              77
  CLUS_2                            10                              61
  CLUS_3                             4                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        5      5      5
  DEL PEAK 21(19Q13.42) WILD-TYPE     70     77     51
D28V3, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             5                              70
  CLUS_2                             5                              77
  CLUS_3                             5                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        3      2      6      4
  DEL PEAK 21(19Q13.42) WILD-TYPE     36     64     59     39
D28V4, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             2                              64
  CLUS_3                             6                              59
  CLUS_4                             4                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        0      1      6     12
  DEL PEAK 21(19Q13.42) WILD-TYPE     34     95     60     80
D28V5, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             0                              34
  CLUS_2                             1                              95
  CLUS_3                             6                              60
  CLUS_4                            12                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED       14      2      3
  DEL PEAK 21(19Q13.42) WILD-TYPE    104    121     44
D28V6, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                            14                             104
  CLUS_2                             2                             121
  CLUS_3                             3                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        4      7      8
  DEL PEAK 21(19Q13.42) WILD-TYPE     85    103     81
D28V7, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             4                              85
  CLUS_2                             7                             103
  CLUS_3                             8                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        9      3      7
  DEL PEAK 21(19Q13.42) WILD-TYPE    111     77     81
D28V8, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             9                             111
  CLUS_2                             3                              77
  CLUS_3                             7                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        6      3      8
  DEL PEAK 21(19Q13.42) WILD-TYPE     64     78     63
D28V9, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             6                              64
  CLUS_2                             3                              78
  CLUS_3                             8                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        8      8      1      0
  DEL PEAK 21(19Q13.42) WILD-TYPE     95     67     14     29
D28V10, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             8                              95
  CLUS_2                             8                              67
  CLUS_3                             1                              14
  CLUS_4                             0                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 22(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED       23      6      2     32
  DEL PEAK 22(22Q12.2) WILD-TYPE     91     70     44     20
D29V1, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           23                             91
  CLUS_2                            6                             70
  CLUS_3                            2                             44
  CLUS_4                           32                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       13     36     11
  DEL PEAK 22(22Q12.2) WILD-TYPE     69     35    108
D29V2, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           13                             69
  CLUS_2                           36                             35
  CLUS_3                           11                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       16     18     17
  DEL PEAK 22(22Q12.2) WILD-TYPE     59     64     39
D29V3, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           18                             64
  CLUS_3                           17                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED        4     12     25     10
  DEL PEAK 22(22Q12.2) WILD-TYPE     35     54     40     33
D29V4, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                           12                             54
  CLUS_3                           25                             40
  CLUS_4                           10                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED        0      7     13     43
  DEL PEAK 22(22Q12.2) WILD-TYPE     34     89     53     49
D29V5, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            7                             89
  CLUS_3                           13                             53
  CLUS_4                           43                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       36      9     18
  DEL PEAK 22(22Q12.2) WILD-TYPE     82    114     29
D29V6, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           36                             82
  CLUS_2                            9                            114
  CLUS_3                           18                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       19     25     19
  DEL PEAK 22(22Q12.2) WILD-TYPE     70     85     70
D29V7, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           19                             70
  CLUS_2                           25                             85
  CLUS_3                           19                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       28     15     20
  DEL PEAK 22(22Q12.2) WILD-TYPE     92     65     68
D29V8, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           28                             92
  CLUS_2                           15                             65
  CLUS_3                           20                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       18     11     21
  DEL PEAK 22(22Q12.2) WILD-TYPE     52     70     50
D29V9, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           18                             52
  CLUS_2                           11                             70
  CLUS_3                           21                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED       20     22      7      1
  DEL PEAK 22(22Q12.2) WILD-TYPE     83     53      8     28
D29V10, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           20                             83
  CLUS_2                           22                             53
  CLUS_3                            7                              8
  CLUS_4                            1                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 23(XP11.4) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED       12      1      1     20
  DEL PEAK 23(XP11.4) WILD-TYPE    102     75     45     32
D30V1, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          12                           102
  CLUS_2                           1                            75
  CLUS_3                           1                            45
  CLUS_4                          20                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED        8     21      3
  DEL PEAK 23(XP11.4) WILD-TYPE     74     50    116
D30V2, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           8                            74
  CLUS_2                          21                            50
  CLUS_3                           3                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED       11      7      4
  DEL PEAK 23(XP11.4) WILD-TYPE     64     75     52
D30V3, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          11                            64
  CLUS_2                           7                            75
  CLUS_3                           4                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED        1      5     15      1
  DEL PEAK 23(XP11.4) WILD-TYPE     38     61     50     42
D30V4, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           5                            61
  CLUS_3                          15                            50
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED        0      2      5     27
  DEL PEAK 23(XP11.4) WILD-TYPE     34     94     61     65
D30V5, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           2                            94
  CLUS_3                           5                            61
  CLUS_4                          27                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED       19      3     12
  DEL PEAK 23(XP11.4) WILD-TYPE     99    120     35
D30V6, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          19                            99
  CLUS_2                           3                           120
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED       11     10     13
  DEL PEAK 23(XP11.4) WILD-TYPE     78    100     76
D30V7, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          11                            78
  CLUS_2                          10                           100
  CLUS_3                          13                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED       16      6     12
  DEL PEAK 23(XP11.4) WILD-TYPE    104     74     76
D30V8, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          16                           104
  CLUS_2                           6                            74
  CLUS_3                          12                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED        9      2     14
  DEL PEAK 23(XP11.4) WILD-TYPE     61     79     57
D30V9, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           9                            61
  CLUS_2                           2                            79
  CLUS_3                          14                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED        4     17      4      0
  DEL PEAK 23(XP11.4) WILD-TYPE     99     58     11     29
D30V10, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           4                            99
  CLUS_2                          17                            58
  CLUS_3                           4                            11
  CLUS_4                           0                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 24(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED       10      0      1     17
  DEL PEAK 24(XQ28) WILD-TYPE    104     76     45     35
D31V1, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        10                         104
  CLUS_2                         0                          76
  CLUS_3                         1                          45
  CLUS_4                        17                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        7     16      3
  DEL PEAK 24(XQ28) WILD-TYPE     75     55    116
D31V2, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         7                          75
  CLUS_2                        16                          55
  CLUS_3                         3                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        7      7      4
  DEL PEAK 24(XQ28) WILD-TYPE     68     75     52
D31V3, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         7                          68
  CLUS_2                         7                          75
  CLUS_3                         4                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED        2      5     10      1
  DEL PEAK 24(XQ28) WILD-TYPE     37     61     55     42
D31V4, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         2                          37
  CLUS_2                         5                          61
  CLUS_3                        10                          55
  CLUS_4                         1                          42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED        0      2      4     22
  DEL PEAK 24(XQ28) WILD-TYPE     34     94     62     70
D31V5, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         0                          34
  CLUS_2                         2                          94
  CLUS_3                         4                          62
  CLUS_4                        22                          70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED       15      3     10
  DEL PEAK 24(XQ28) WILD-TYPE    103    120     37
D31V6, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        15                         103
  CLUS_2                         3                         120
  CLUS_3                        10                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        7     10     11
  DEL PEAK 24(XQ28) WILD-TYPE     82    100     78
D31V7, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         7                          82
  CLUS_2                        10                         100
  CLUS_3                        11                          78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED       12      7      9
  DEL PEAK 24(XQ28) WILD-TYPE    108     73     79
D31V8, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        12                         108
  CLUS_2                         7                          73
  CLUS_3                         9                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        6      2     12
  DEL PEAK 24(XQ28) WILD-TYPE     64     79     59
D31V9, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         6                          64
  CLUS_2                         2                          79
  CLUS_3                        12                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED        4     12      4      0
  DEL PEAK 24(XQ28) WILD-TYPE     99     63     11     29
D31V10, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         4                          99
  CLUS_2                        12                          63
  CLUS_3                         4                          11
  CLUS_4                         0                          29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
