patient	chr	start	end	type	gene	Protein_Change	n_cos
LIHC-MI-A75C-TP	12	25398284	25398284	Missense_Mutation	KRAS	p.G12D	14604
LIHC-DD-A3A4-TP	12	25398281	25398281	Missense_Mutation	KRAS	p.G13D	2258
LIHC-BC-A10Q-TP	2	209113113	209113113	Missense_Mutation	IDH1	p.R132C	1492
LIHC-CC-5260-TP	2	209113113	209113113	Missense_Mutation	IDH1	p.R132C	1492
LIHC-DD-A4NA-TP	2	209113113	209113113	Missense_Mutation	IDH1	p.R132G	1492
LIHC-BW-A5NP-TP	1	115256530	115256530	Missense_Mutation	NRAS	p.Q61K	1298
LIHC-ED-A7PZ-TP	17	7577531	7577538	Frame_Shift_Del	TP53	p.RRP248fs	1009
LIHC-UB-A7MC-TP	17	7577538	7577538	Missense_Mutation	TP53	p.R248Q	1009
LIHC-BC-A216-TP	17	7577539	7577539	Missense_Mutation	TP53	p.R248W	986
LIHC-DD-A3A1-TP	3	178952085	178952085	Missense_Mutation	PIK3CA	p.H1047R	977
LIHC-G3-A7M8-TP	3	178952085	178952085	Missense_Mutation	PIK3CA	p.H1047R	977
LIHC-BC-A217-TP	17	7577120	7577120	Missense_Mutation	TP53	p.R273H	890
LIHC-BC-A10U-TP	3	41266137	41266138	Missense_Mutation	CTNNB1	p.S45F	665
LIHC-DD-A4NK-TP	3	41266137	41266137	Missense_Mutation	CTNNB1	p.S45Y	664
LIHC-O8-A75V-TP	3	41266136	41266136	Missense_Mutation	CTNNB1	p.S45P	660
LIHC-RG-A7D4-TP	3	41266136	41266136	Missense_Mutation	CTNNB1	p.S45P	660
LIHC-BC-A112-TP	3	178936091	178936091	Missense_Mutation	PIK3CA	p.E545K	654
LIHC-DD-A11D-TP	3	41266124	41266124	Missense_Mutation	CTNNB1	p.T41A	527
LIHC-EP-A26S-TP	3	41266125	41266125	Missense_Mutation	CTNNB1	p.T41I	518
LIHC-KR-A7K0-TP	3	41266112	41266112	Missense_Mutation	CTNNB1	p.S37A	371
LIHC-DD-A116-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	p.S33P	370
LIHC-DD-A39V-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	p.S33P	370
LIHC-EP-A12J-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	p.S33A	370
LIHC-G3-A3CK-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	p.S33P	370
LIHC-G3-A6UC-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	p.S33P	370
LIHC-BW-A5NQ-TP	3	41266113	41266113	Missense_Mutation	CTNNB1	p.S37F	360
LIHC-CC-A3M9-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-CC-A3MB-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-CC-A5UE-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-CC-A7II-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-DD-A114-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-ED-A7XP-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-G3-A25U-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-QA-A7B7-TP	17	7577534	7577534	Missense_Mutation	TP53	p.R249S	360
LIHC-UB-A7MC-TP	3	41266113	41266113	Missense_Mutation	CTNNB1	p.S37C	360
LIHC-CC-A5UD-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	p.S33Y	349
LIHC-ED-A7XP-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	p.S33C	349
LIHC-FV-A4ZQ-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	p.S33C	349
LIHC-CC-5259-TP	3	178936082	178936082	Missense_Mutation	PIK3CA	p.E542K	334
LIHC-CC-A7IK-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
LIHC-CC-A7IL-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
LIHC-DD-A73D-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32G	311
LIHC-DD-A73E-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
LIHC-ED-A7PZ-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32G	311
LIHC-EP-A2KC-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32G	311
LIHC-G3-A5SL-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32G	311
LIHC-MI-A75H-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
LIHC-RC-A6M4-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
LIHC-DD-A4NF-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32Y	258
LIHC-G3-A25S-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32N	258
LIHC-UB-A7MD-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32N	258
LIHC-DD-A3A0-TP	17	7577557	7577557	Missense_Mutation	TP53	p.C242S	222
LIHC-DD-A118-TP	20	57484420	57484420	Missense_Mutation	GNAS	p.R201C	210
LIHC-FV-A3R3-TP	20	57484420	57484420	Missense_Mutation	GNAS	p.R201C	210
LIHC-G3-A7M7-TP	20	57484420	57484420	Missense_Mutation	GNAS	p.R201C	210
LIHC-BC-A10U-TP	17	7578211	7578211	Missense_Mutation	TP53	p.R213Q	198
LIHC-ED-A459-TP	17	7578190	7578190	Missense_Mutation	TP53	p.Y220C	188
LIHC-CC-A7IG-TP	17	7578188	7578188	Nonsense_Mutation	TP53	p.E221*	186
LIHC-EP-A3RK-TP	3	41266104	41266104	Missense_Mutation	CTNNB1	p.G34E	172
LIHC-G3-A3CJ-TP	3	41266104	41266104	Missense_Mutation	CTNNB1	p.G34V	172
LIHC-CC-5263-TP	17	7577107	7577107	Nonsense_Mutation	TP53	p.C277*	156
LIHC-CC-A5UD-TP	17	7578461	7578461	Missense_Mutation	TP53	p.V157F	156
LIHC-CC-A7IJ-TP	17	7578461	7578461	Missense_Mutation	TP53	p.V157F	156
LIHC-DD-A1EG-TP	17	7578460	7578460	Missense_Mutation	TP53	p.V157G	144
LIHC-DD-A11A-TP	17	7578454	7578455	In_Frame_Ins	TP53	p.158_159insVR	137
LIHC-FV-A3I1-TP	17	7578271	7578271	Missense_Mutation	TP53	p.H193R	126
LIHC-FV-A4ZQ-TP	17	7577141	7577141	Missense_Mutation	TP53	p.G266V	126
LIHC-G3-A25Z-TP	17	7578271	7578271	Missense_Mutation	TP53	p.H193R	126
LIHC-G3-A7M9-TP	17	7578264	7578270	Frame_Shift_Del	TP53	p.HLI193fs	126
LIHC-MI-A75G-TP	17	7578271	7578271	Missense_Mutation	TP53	p.H193R	126
LIHC-BW-A5NO-TP	17	7577142	7577142	Missense_Mutation	TP53	p.G266R	118
LIHC-DD-A39Y-TP	17	7578457	7578457	Missense_Mutation	TP53	p.R158H	114
LIHC-DD-A3A7-TP	17	7578525	7578525	Nonsense_Mutation	TP53	p.C135*	114
LIHC-MI-A75I-TP	17	7578457	7578457	Missense_Mutation	TP53	p.R158H	114
LIHC-BC-A10R-TP	17	7578524	7578524	Nonsense_Mutation	TP53	p.Q136*	105
LIHC-DD-A1EL-TP	3	41266110	41266110	Missense_Mutation	CTNNB1	p.H36P	98
LIHC-DD-A4NI-TP	3	41266110	41266110	Missense_Mutation	CTNNB1	p.H36P	98
LIHC-G3-A3CK-TP	3	41266110	41266110	Missense_Mutation	CTNNB1	p.H36P	98
LIHC-FV-A3R2-TP	17	7577022	7577022	Nonsense_Mutation	TP53	p.R306*	89
LIHC-ED-A82E-TP	15	90631838	90631838	Missense_Mutation	IDH2	p.R172K	83
LIHC-G3-A25T-TP	15	90631837	90631837	Missense_Mutation	IDH2	p.R172S	83
LIHC-BD-A3EP-TP	17	7578478	7578478	Missense_Mutation	TP53	p.P151H	82
LIHC-RG-A7D4-TP	17	7577114	7577114	Missense_Mutation	TP53	p.C275Y	77
LIHC-G3-A7M6-TP	17	7578205	7578205	Missense_Mutation	TP53	p.S215N	72
LIHC-UB-A7MF-TP	17	7578205	7578205	Missense_Mutation	TP53	p.S215I	72
LIHC-BW-A5NQ-TP	17	7578275	7578275	Nonsense_Mutation	TP53	p.Q192*	62
LIHC-DD-A1EL-TP	17	7578449	7578449	Missense_Mutation	TP53	p.A161S	48
LIHC-G3-A25V-TP	17	7577531	7577531	Frame_Shift_Del	TP53	p.P250fs	48
LIHC-FV-A4ZP-TP	17	7577082	7577082	Missense_Mutation	TP53	p.E286K	44
LIHC-ED-A7XO-TP	17	7577511	7577511	Missense_Mutation	TP53	p.L257P	41
LIHC-RC-A7SB-TP	17	7577509	7577509	Missense_Mutation	TP53	p.E258K	41
LIHC-ED-A7XP-TP	9	21971111	21971111	Missense_Mutation	CDKN2A	p.H83D	37
LIHC-DD-A1EB-TP	17	7578554	7578554	Splice_Site	TP53	p.Y126D	34
LIHC-BD-A2L6-TP	10	89720811	89720812	Frame_Shift_Ins	PTEN	p.TK321fs	28
LIHC-BC-A3KG-TP	17	7577565	7577565	Missense_Mutation	TP53	p.N239S	27
LIHC-CC-A1HT-TP	17	7578555	7578555	Splice_Site	TP53		26
LIHC-DD-A1EA-TP	3	41266093	41266107	In_Frame_Del	CTNNB1	p.LDSGI31del	24
LIHC-BC-A10U-TP	3	41266132	41266133	Frame_Shift_Ins	CTNNB1	p.P44fs	23
LIHC-DD-A4NE-TP	10	89717712	89717712	Missense_Mutation	PTEN	p.P246R	23
LIHC-CC-A7IK-TP	17	7576868	7576897	In_Frame_Del	TP53	p.QPKKKPLDGE317del	20
LIHC-DD-A3A6-TP	22	30038257	30038258	Frame_Shift_Ins	NF2	p.Y144fs	20
LIHC-DD-A3A0-TP	10	89717725	89717725	Nonsense_Mutation	PTEN	p.C250*	17
LIHC-DD-A1EI-TP	17	7578419	7578419	Nonsense_Mutation	TP53	p.E171*	15
LIHC-CC-A3MA-TP	17	7579349	7579349	Missense_Mutation	TP53	p.F113C	13
LIHC-CC-A7IH-TP	3	41266127	41266150	In_Frame_Del	CTNNB1	p.TAPSLSGK42del	13
LIHC-G3-A3CJ-TP	17	7578503	7578503	Missense_Mutation	TP53	p.V143M	13
LIHC-K7-A5RG-TP	17	7576928	7576928	Splice_Site	TP53		13
LIHC-BC-A5W4-TP	17	7577111	7577111	Missense_Mutation	TP53	p.A276G	7
LIHC-CC-A5UD-TP	10	89712017	89712017	Splice_Site	PTEN		7
LIHC-DD-A4NE-TP	3	178952100	178952100	Missense_Mutation	PIK3CA	p.T1052K	7
LIHC-UB-A7MB-TP	17	7578235	7578235	Missense_Mutation	TP53	p.Y205C	7
LIHC-DD-A4NJ-TP	13	48951170	48951170	Splice_Site	RB1	p.Q444Q	6
LIHC-UB-A7MD-TP	17	7579591	7579591	Splice_Site	TP53		6
LIHC-CC-5263-TP	22	30050696	30050696	Missense_Mutation	NF2	p.E166D	5
LIHC-ED-A7PZ-TP	13	49027173	49027173	Missense_Mutation	RB1	p.E580D	5
LIHC-T1-A6J8-TP	17	7578290	7578290	Splice_Site	TP53		5
LIHC-DD-A3A2-TP	12	121431506	121431506	Missense_Mutation	HNF1A	p.N237S	4
LIHC-DD-A4NP-TP	5	112111324	112111324	Splice_Site	APC		4
LIHC-CC-A3M9-TP	12	121432040	121432040	Missense_Mutation	HNF1A	p.R263G	3
LIHC-DD-A11C-TP	10	89711906	89711906	Missense_Mutation	PTEN	p.V175A	3
LIHC-FV-A4ZQ-TP	4	153253841	153253841	Missense_Mutation	FBXW7	p.P298T	3
LIHC-QA-A7B7-TP	10	89720726	89720726	Frame_Shift_Del	PTEN	p.G293fs	3
LIHC-CC-5259-TP	17	7579312	7579312	Splice_Site	TP53	p.T125T	2
LIHC-CC-A5UD-TP	4	55593652	55593652	Missense_Mutation	KIT	p.P573Q	2
LIHC-CC-A7IF-TP	13	48954325	48954326	Frame_Shift_Del	RB1	p.FH482fs	2
LIHC-CC-A7IG-TP	13	49039196	49039228	In_Frame_Del	RB1	p.VFMQRLKTNIL759del	2
LIHC-DD-A113-TP	13	48881512	48881512	Nonsense_Mutation	RB1	p.W78*	2
LIHC-DD-A1EJ-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	p.K335I	2
LIHC-DD-A3A4-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	p.K335I	2
LIHC-DD-A4NB-TP	12	25380255	25380255	Missense_Mutation	KRAS	p.R68M	2
LIHC-DD-A4NE-TP	13	48919320	48919321	Frame_Shift_Ins	RB1	p.FS162fs	2
LIHC-DD-A4NF-TP	23	105011411	105011411	Missense_Mutation	IL1RAPL2	p.F606L	2
LIHC-DD-A4NL-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	p.K335I	2
LIHC-ED-A66Y-TP	13	48951053	48951053	Splice_Site	RB1		2
LIHC-G3-A25Y-TP	13	48953728	48953728	Splice_Site	RB1		2
LIHC-G3-A5SI-TP	11	32414248	32414248	Missense_Mutation	WT1	p.S223P	2
LIHC-G3-A5SJ-TP	17	7578513	7578513	Missense_Mutation	TP53	p.K139N	2
LIHC-G3-A5SM-TP	17	7574035	7574035	Splice_Site	TP53		2
LIHC-K7-A6G5-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	p.K335T	2
LIHC-MI-A75C-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	p.K335I	2
LIHC-MR-A520-TP	1	94654393	94654393	Splice_Site	ARHGAP29	p.G561R	2
LIHC-PD-A5DF-TP	5	67591127	67591129	In_Frame_Del	PIK3R1	p.R574del	2
LIHC-BC-4073-TP	12	105509006	105509006	Splice_Site	KIAA1033	p.G122G	1
LIHC-BC-A112-TP	23	83128980	83128981	Frame_Shift_Ins	CYLC1	p.E422fs	1
LIHC-BC-A112-TP	10	89720665	89720666	Frame_Shift_Ins	PTEN	p.F273fs	1
LIHC-BC-A69H-TP	17	7579389	7579399	Frame_Shift_Del	TP53	p.VPSQ97fs	1
LIHC-CC-5262-TP	17	78704429	78704429	Missense_Mutation	RPTOR	p.V193I	1
LIHC-CC-A7IK-TP	8	131848557	131848557	Missense_Mutation	ADCY8	p.F881L	1
LIHC-DD-A114-TP	13	49030478	49030479	Frame_Shift_Ins	RB1	p.K652fs	1
LIHC-DD-A116-TP	3	122287562	122287562	Missense_Mutation	DTX3L	p.K209R	1
LIHC-DD-A11A-TP	7	34698055	34698055	Missense_Mutation	NPSR1	p.D11N	1
LIHC-DD-A11D-TP	19	46832675	46832675	Missense_Mutation	HIF3A	p.C551F	1
LIHC-DD-A1EF-TP	19	11141502	11141502	Missense_Mutation	SMARCA4	p.G1160E	1
LIHC-DD-A39Z-TP	3	47155420	47155420	Missense_Mutation	SETD2	p.V1554A	1
LIHC-DD-A3A1-TP	15	34355738	34355738	Missense_Mutation	CHRM5	p.S274P	1
LIHC-DD-A3A3-TP	4	55976858	55976858	Missense_Mutation	KDR	p.A352S	1
LIHC-DD-A3A6-TP	19	55418067	55418067	Missense_Mutation	NCR1	p.P86L	1
LIHC-DD-A4NF-TP	1	160165717	160165717	Missense_Mutation	CASQ1	p.E228K	1
LIHC-DD-A73G-TP	2	5834087	5834087	Nonsense_Mutation	SOX11	p.E412*	1
LIHC-ED-A4XI-TP	10	38345268	38345268	Missense_Mutation	ZNF33A	p.H738L	1
LIHC-ED-A66X-TP	3	134670256	134670256	Missense_Mutation	EPHB1	p.R56H	1
LIHC-EP-A2KA-TP	17	56690838	56690838	Missense_Mutation	TEX14	p.R323S	1
LIHC-EP-A2KB-TP	12	123055607	123055607	Missense_Mutation	KNTC1	p.E651D	1
LIHC-FV-A2QQ-TP	2	179436094	179436094	Missense_Mutation	TTN	p.R23281T	1
LIHC-G3-A25S-TP	19	6825416	6825416	Splice_Site	VAV1	p.R276G	1
LIHC-G3-A25V-TP	17	11998923	11998923	Frame_Shift_Del	MAP2K4	p.Q142fs	1
LIHC-G3-A3CH-TP	13	48954378	48954378	Splice_Site	RB1		1
LIHC-G3-A3CK-TP	12	57911095	57911095	Missense_Mutation	DDIT3	p.D32V	1
LIHC-G3-A3CK-TP	4	177608449	177608449	Missense_Mutation	VEGFC	p.T346S	1
LIHC-G3-A5SI-TP	13	48953741	48953742	Frame_Shift_Ins	RB1	p.G449fs	1
LIHC-G3-A5SJ-TP	1	11317091	11317091	Missense_Mutation	MTOR	p.M135V	1
LIHC-KR-A7K0-TP	19	45856053	45856053	Missense_Mutation	ERCC2	p.V618G	1
LIHC-NI-A4U2-TP	12	121431983	121431983	Missense_Mutation	HNF1A	p.R244G	1
LIHC-NI-A4U2-TP	12	66531753	66531753	Missense_Mutation	TMBIM4	p.V235G	1
LIHC-RC-A6M4-TP	19	18710417	18710417	Missense_Mutation	CRLF1	p.R119S	1
LIHC-RC-A6M4-TP	6	150005471	150005471	Nonsense_Mutation	LATS1	p.R252*	1
LIHC-RC-A7S9-TP	13	48953788	48953788	Splice_Site	RB1		1
LIHC-RC-A7SK-TP	17	7578410	7578410	Missense_Mutation	TP53	p.R174W	1
