[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
PATHOLOGIC_STAGE            "PATHOLOGIC_STAGE"           
PATHOLOGY_T_STAGE           "PATHOLOGY_T_STAGE"          
PATHOLOGY_N_STAGE           "PATHOLOGY_N_STAGE"          
GENDER                      "GENDER"                     
RADIATION_THERAPY           "RADIATION_THERAPY"          
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
HISTOLOGICAL_TYPE           "HISTOLOGICAL_TYPE"          
RESIDUAL_TUMOR              "RESIDUAL_TUMOR"             
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=4"            
YEARS_TO_BIRTH              "Spearman correlation test" "N=0"            
PATHOLOGIC_STAGE            "Kruskal-Wallis test"       "N=0"            
PATHOLOGY_T_STAGE           "Spearman correlation test" "N=0"            
PATHOLOGY_N_STAGE           "Spearman correlation test" "N=1"            
GENDER                      "Wilcoxon test"             "N=0"            
RADIATION_THERAPY           "Wilcoxon test"             "N=12"           
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=0"            
HISTOLOGICAL_TYPE           "Kruskal-Wallis test"       "N=0"            
RESIDUAL_TUMOR              "Kruskal-Wallis test"       "N=0"            
                            Associated with   
DAYS_TO_DEATH_OR_LAST_FUP   "shorter survival"
YEARS_TO_BIRTH              " "               
PATHOLOGIC_STAGE            " "               
PATHOLOGY_T_STAGE           " "               
PATHOLOGY_N_STAGE           "higher stage"    
GENDER                      " "               
RADIATION_THERAPY           "yes"             
KARNOFSKY_PERFORMANCE_SCORE " "               
HISTOLOGICAL_TYPE           " "               
RESIDUAL_TUMOR              " "               
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   "N=4"                                                                                     
YEARS_TO_BIRTH              " "                                                                                       
PATHOLOGIC_STAGE            " "                                                                                       
PATHOLOGY_T_STAGE           " "                                                                                       
PATHOLOGY_N_STAGE           "N=0"                                                                                     
GENDER                      " "                                                                                       
RADIATION_THERAPY           "N=12"                                                                                    
KARNOFSKY_PERFORMANCE_SCORE " "                                                                                       
HISTOLOGICAL_TYPE           " "                                                                                       
RESIDUAL_TUMOR              " "                                                                                       
                            Associated with        
DAYS_TO_DEATH_OR_LAST_FUP   "longer survival" "N=0"
YEARS_TO_BIRTH              " "               " "  
PATHOLOGIC_STAGE            " "               " "  
PATHOLOGY_T_STAGE           " "               " "  
PATHOLOGY_N_STAGE           "lower stage"     "N=1"
GENDER                      " "               " "  
RADIATION_THERAPY           "no"              "N=0"
KARNOFSKY_PERFORMANCE_SCORE " "               " "  
HISTOLOGICAL_TYPE           " "               " "  
RESIDUAL_TUMOR              " "               " "  
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
