[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
TUMOR_TISSUE_SITE           "TUMOR_TISSUE_SITE"          
RADIATION_THERAPY           "RADIATION_THERAPY"          
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
RESIDUAL_TUMOR              "RESIDUAL_TUMOR"             
RACE                        "RACE"                       
ETHNICITY                   "ETHNICITY"                  
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=30"           
YEARS_TO_BIRTH              "Spearman correlation test" "N=30"           
TUMOR_TISSUE_SITE           "Kruskal-Wallis test"       "N=0"            
RADIATION_THERAPY           "Wilcoxon test"             "N=0"            
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=0"            
RESIDUAL_TUMOR              "Kruskal-Wallis test"       "N=0"            
RACE                        "Kruskal-Wallis test"       "N=0"            
ETHNICITY                   "Wilcoxon test"             "N=2"            
                            Associated with         
DAYS_TO_DEATH_OR_LAST_FUP   "shorter survival"      
YEARS_TO_BIRTH              "older"                 
TUMOR_TISSUE_SITE           " "                     
RADIATION_THERAPY           " "                     
KARNOFSKY_PERFORMANCE_SCORE " "                     
RESIDUAL_TUMOR              " "                     
RACE                        " "                     
ETHNICITY                   "not hispanic or latino"
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   "N=15"                                                                                    
YEARS_TO_BIRTH              "N=14"                                                                                    
TUMOR_TISSUE_SITE           " "                                                                                       
RADIATION_THERAPY           " "                                                                                       
KARNOFSKY_PERFORMANCE_SCORE " "                                                                                       
RESIDUAL_TUMOR              " "                                                                                       
RACE                        " "                                                                                       
ETHNICITY                   "N=2"                                                                                     
                            Associated with            
DAYS_TO_DEATH_OR_LAST_FUP   "longer survival"    "N=15"
YEARS_TO_BIRTH              "younger"            "N=16"
TUMOR_TISSUE_SITE           " "                  " "   
RADIATION_THERAPY           " "                  " "   
KARNOFSKY_PERFORMANCE_SCORE " "                  " "   
RESIDUAL_TUMOR              " "                  " "   
RACE                        " "                  " "   
ETHNICITY                   "hispanic or latino" "N=0" 
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
