[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  METHYLATION"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
RADIATION_THERAPY         "RADIATION_THERAPY"        
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
RESIDUAL_TUMOR            "RESIDUAL_TUMOR"           
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
GLEASON_SCORE             "GLEASON_SCORE"            
PSA_VALUE                 "PSA_VALUE"                
RACE                      "RACE"                     
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=11"           
YEARS_TO_BIRTH            "Spearman correlation test" "N=30"           
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE         "Wilcoxon test"             "N=30"           
RADIATION_THERAPY         "Wilcoxon test"             "N=30"           
HISTOLOGICAL_TYPE         "Wilcoxon test"             "N=0"            
RESIDUAL_TUMOR            "Kruskal-Wallis test"       "N=30"           
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=30"           
GLEASON_SCORE             "Spearman correlation test" "N=30"           
PSA_VALUE                 "Spearman correlation test" "N=30"           
RACE                      "Kruskal-Wallis test"       "N=0"            
                          Associated with               
DAYS_TO_DEATH_OR_LAST_FUP "shorter survival"            
YEARS_TO_BIRTH            "older"                       
PATHOLOGY_T_STAGE         "higher stage"                
PATHOLOGY_N_STAGE         "n1"                          
RADIATION_THERAPY         "yes"                         
HISTOLOGICAL_TYPE         " "                           
RESIDUAL_TUMOR            " "                           
NUMBER_OF_LYMPH_NODES     "higher number_of_lymph_nodes"
GLEASON_SCORE             "higher score"                
PSA_VALUE                 "higher psa_value"            
RACE                      " "                           
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP "N=10"                                                                                    
YEARS_TO_BIRTH            "N=30"                                                                                    
PATHOLOGY_T_STAGE         "N=23"                                                                                    
PATHOLOGY_N_STAGE         "N=30"                                                                                    
RADIATION_THERAPY         "N=30"                                                                                    
HISTOLOGICAL_TYPE         " "                                                                                       
RESIDUAL_TUMOR            " "                                                                                       
NUMBER_OF_LYMPH_NODES     "N=0"                                                                                     
GLEASON_SCORE             "N=12"                                                                                    
PSA_VALUE                 "N=7"                                                                                     
RACE                      " "                                                                                       
                          Associated with                     
DAYS_TO_DEATH_OR_LAST_FUP "longer survival"             "N=1" 
YEARS_TO_BIRTH            "younger"                     "N=0" 
PATHOLOGY_T_STAGE         "lower stage"                 "N=7" 
PATHOLOGY_N_STAGE         "n0"                          "N=0" 
RADIATION_THERAPY         "no"                          "N=0" 
HISTOLOGICAL_TYPE         " "                           " "   
RESIDUAL_TUMOR            " "                           " "   
NUMBER_OF_LYMPH_NODES     "lower number_of_lymph_nodes" "N=30"
GLEASON_SCORE             "lower score"                 "N=18"
PSA_VALUE                 "lower psa_value"             "N=23"
RACE                      " "                           " "   
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
