[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
RADIATION_THERAPY         "RADIATION_THERAPY"        
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
RESIDUAL_TUMOR            "RESIDUAL_TUMOR"           
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
GLEASON_SCORE             "GLEASON_SCORE"            
PSA_VALUE                 "PSA_VALUE"                
RACE                      "RACE"                     
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=0"            
YEARS_TO_BIRTH            "Spearman correlation test" "N=30"           
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE         "Wilcoxon test"             "N=30"           
RADIATION_THERAPY         "Wilcoxon test"             "N=30"           
HISTOLOGICAL_TYPE         "Wilcoxon test"             "N=12"           
RESIDUAL_TUMOR            "Kruskal-Wallis test"       "N=30"           
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=30"           
GLEASON_SCORE             "Spearman correlation test" "N=30"           
PSA_VALUE                 "Spearman correlation test" "N=30"           
RACE                      "Kruskal-Wallis test"       "N=0"            
                          Associated with                      
DAYS_TO_DEATH_OR_LAST_FUP " "                                  
YEARS_TO_BIRTH            "older"                              
PATHOLOGY_T_STAGE         "higher stage"                       
PATHOLOGY_N_STAGE         "n1"                                 
RADIATION_THERAPY         "yes"                                
HISTOLOGICAL_TYPE         "prostate adenocarcinoma acinar type"
RESIDUAL_TUMOR            " "                                  
NUMBER_OF_LYMPH_NODES     "higher number_of_lymph_nodes"       
GLEASON_SCORE             "higher score"                       
PSA_VALUE                 "higher psa_value"                   
RACE                      " "                                  
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP " "                                                                                       
YEARS_TO_BIRTH            "N=16"                                                                                    
PATHOLOGY_T_STAGE         "N=16"                                                                                    
PATHOLOGY_N_STAGE         "N=30"                                                                                    
RADIATION_THERAPY         "N=30"                                                                                    
HISTOLOGICAL_TYPE         "N=12"                                                                                    
RESIDUAL_TUMOR            " "                                                                                       
NUMBER_OF_LYMPH_NODES     "N=12"                                                                                    
GLEASON_SCORE             "N=17"                                                                                    
PSA_VALUE                 "N=11"                                                                                    
RACE                      " "                                                                                       
                          Associated with                                
DAYS_TO_DEATH_OR_LAST_FUP " "                                      " "   
YEARS_TO_BIRTH            "younger"                                "N=14"
PATHOLOGY_T_STAGE         "lower stage"                            "N=14"
PATHOLOGY_N_STAGE         "n0"                                     "N=0" 
RADIATION_THERAPY         "no"                                     "N=0" 
HISTOLOGICAL_TYPE         "prostate adenocarcinoma  other subtype" "N=0" 
RESIDUAL_TUMOR            " "                                      " "   
NUMBER_OF_LYMPH_NODES     "lower number_of_lymph_nodes"            "N=18"
GLEASON_SCORE             "lower score"                            "N=13"
PSA_VALUE                 "lower psa_value"                        "N=19"
RACE                      " "                                      " "   
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
