[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/20168456/PRAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/20064817/transformed.cor.cli.txt"

nPatients in clinical file=498, in cluster file=332, common to both=332
[1]  22 332
[1] "SPOP MUTATION ANALYSIS"
[1] 3
  SPOP MUTATED SPOP WILD-TYPE 
            37            295 
  SPOP MUTATED SPOP WILD-TYPE 
            37            295 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            23            309 
  TP53 MUTATED TP53 WILD-TYPE 
            23            309 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             13             319 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             13             319 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             8            324 
  BRAF MUTATED BRAF WILD-TYPE 
             8            324 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             9            323 
  PTEN MUTATED PTEN WILD-TYPE 
             9            323 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           13           319 
  ATM MUTATED ATM WILD-TYPE 
           13           319 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               8              324 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               8              324 
[1] "MED12 MUTATION ANALYSIS"
[1] 3
  MED12 MUTATED MED12 WILD-TYPE 
              6             326 
  MED12 MUTATED MED12 WILD-TYPE 
              6             326 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
              6             326 
  KDM6A MUTATED KDM6A WILD-TYPE 
              6             326 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            11            321 
  MLL2 MUTATED MLL2 WILD-TYPE 
            11            321 
[1] "AKT1 MUTATION ANALYSIS"
[1] 3
  AKT1 MUTATED AKT1 WILD-TYPE 
             3            329 
  AKT1 MUTATED AKT1 WILD-TYPE 
             3            329 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
             4            328 
  HRAS MUTATED HRAS WILD-TYPE 
             4            328 
[1] "XPO5 MUTATION ANALYSIS"
[1] 3
  XPO5 MUTATED XPO5 WILD-TYPE 
             3            329 
  XPO5 MUTATED XPO5 WILD-TYPE 
             3            329 
[1] "KLHL2 MUTATION ANALYSIS"
[1] 3
  KLHL2 MUTATED KLHL2 WILD-TYPE 
              4             328 
  KLHL2 MUTATED KLHL2 WILD-TYPE 
              4             328 
[1] "ZMYM3 MUTATION ANALYSIS"
[1] 3
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
              6             326 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
              6             326 
[1] "AMFR MUTATION ANALYSIS"
[1] 3
  AMFR MUTATED AMFR WILD-TYPE 
             3            329 
  AMFR MUTATED AMFR WILD-TYPE 
             3            329 
[1] "IL6ST MUTATION ANALYSIS"
[1] 3
  IL6ST MUTATED IL6ST WILD-TYPE 
              3             329 
  IL6ST MUTATED IL6ST WILD-TYPE 
              3             329 
[1] "CDK12 MUTATION ANALYSIS"
[1] 3
  CDK12 MUTATED CDK12 WILD-TYPE 
              6             326 
  CDK12 MUTATED CDK12 WILD-TYPE 
              6             326 
[1] "NKX3-1 MUTATION ANALYSIS"
[1] 3
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               4              328 
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               4              328 
[1] "IRF4 MUTATION ANALYSIS"
[1] 3
  IRF4 MUTATED IRF4 WILD-TYPE 
             4            328 
  IRF4 MUTATED IRF4 WILD-TYPE 
             4            328 
[1] "ASH1L MUTATION ANALYSIS"
[1] 3
  ASH1L MUTATED ASH1L WILD-TYPE 
              7             325 
  ASH1L MUTATED ASH1L WILD-TYPE 
              7             325 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            13            319 
  MLL3 MUTATED MLL3 WILD-TYPE 
            13            319 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 332 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 332 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = SPOP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        6     11     20
  SPOP WILD-TYPE    179     77     39
D1V1, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6            179
  CLUS_2           11             77
  CLUS_3           20             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        6     30      1
  SPOP WILD-TYPE    101     73    121
D1V2, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6            101
  CLUS_2           30             73
  CLUS_3            1            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        6      6     11
  SPOP WILD-TYPE     82     51     93
D1V3, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6             82
  CLUS_2            6             51
  CLUS_3           11             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        5      8      5      5
  SPOP WILD-TYPE     53     74     61     38
D1V4, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            5             53
  CLUS_2            8             74
  CLUS_3            5             61
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        7     30      0
  SPOP WILD-TYPE     96     73    126
D1V5, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            7             96
  CLUS_2           30             73
  CLUS_3            0            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        3     34      0
  SPOP WILD-TYPE    113     98     84
D1V6, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            3            113
  CLUS_2           34             98
  CLUS_3            0             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED       11     11     15
  SPOP WILD-TYPE     94     98    100
D1V7, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           11             94
  CLUS_2           11             98
  CLUS_3           15            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOP MUTATED        8      8      1     12      8
  SPOP WILD-TYPE     92     60     38     60     42
D1V8, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            8             92
  CLUS_2            8             60
  CLUS_3            1             38
  CLUS_4           12             60
  CLUS_5            8             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        2      8      2      9
  SPOP WILD-TYPE     48     42     34     66
D1V9, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            2             48
  CLUS_2            8             42
  CLUS_3            2             34
  CLUS_4            9             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPOP MUTATED        3      3      1      7      0      7
  SPOP WILD-TYPE     36     20     20     38     25     51
D1V10, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            3             36
  CLUS_2            3             20
  CLUS_3            1             20
  CLUS_4            7             38
  CLUS_5            0             25
  CLUS_6            7             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        6     15      2
  TP53 WILD-TYPE    179     73     57
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6            179
  CLUS_2           15             73
  CLUS_3            2             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        5      3     15
  TP53 WILD-TYPE    102    100    107
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5            102
  CLUS_2            3            100
  CLUS_3           15            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        3      2     11
  TP53 WILD-TYPE     85     55     93
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             55
  CLUS_3           11             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        4      4      5      3
  TP53 WILD-TYPE     54     78     61     40
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             54
  CLUS_2            4             78
  CLUS_3            5             61
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        4      5     14
  TP53 WILD-TYPE     99     98    112
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             99
  CLUS_2            5             98
  CLUS_3           14            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        5      6     12
  TP53 WILD-TYPE    111    126     72
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5            111
  CLUS_2            6            126
  CLUS_3           12             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        6      7     10
  TP53 WILD-TYPE     99    102    105
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6             99
  CLUS_2            7            102
  CLUS_3           10            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        3      1      9      6      4
  TP53 WILD-TYPE     97     67     30     66     46
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             97
  CLUS_2            1             67
  CLUS_3            9             30
  CLUS_4            6             66
  CLUS_5            4             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        1      4      2      8
  TP53 WILD-TYPE     49     46     34     67
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            4             46
  CLUS_3            2             34
  CLUS_4            8             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED        2      0      4      4      0      5
  TP53 WILD-TYPE     37     23     17     41     25     53
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            0             23
  CLUS_3            4             17
  CLUS_4            4             41
  CLUS_5            0             25
  CLUS_6            5             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = FOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        0      7      6
  FOXA1 WILD-TYPE    185     81     53
D3V1, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             0             185
  CLUS_2             7              81
  CLUS_3             6              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        1     12      0
  FOXA1 WILD-TYPE    106     91    122
D3V2, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1             106
  CLUS_2            12              91
  CLUS_3             0             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        2      2      6
  FOXA1 WILD-TYPE     86     55     98
D3V3, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              55
  CLUS_3             6              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        0      3      3      4
  FOXA1 WILD-TYPE     58     79     63     39
D3V4, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             0              58
  CLUS_2             3              79
  CLUS_3             3              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        3     10      0
  FOXA1 WILD-TYPE    100     93    126
D3V5, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3             100
  CLUS_2            10              93
  CLUS_3             0             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        1     12      0
  FOXA1 WILD-TYPE    115    120     84
D3V6, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1             115
  CLUS_2            12             120
  CLUS_3             0              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        3      3      7
  FOXA1 WILD-TYPE    102    106    108
D3V7, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3             102
  CLUS_2             3             106
  CLUS_3             7             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA1 MUTATED        1      4      0      5      3
  FOXA1 WILD-TYPE     99     64     39     67     47
D3V8, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1              99
  CLUS_2             4              64
  CLUS_3             0              39
  CLUS_4             5              67
  CLUS_5             3              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        1      1      1      5
  FOXA1 WILD-TYPE     49     49     35     70
D3V9, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              49
  CLUS_3             1              35
  CLUS_4             5              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXA1 MUTATED        1      1      0      2      0      4
  FOXA1 WILD-TYPE     38     22     21     43     25     54
D3V10, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             1              22
  CLUS_3             0              21
  CLUS_4             2              43
  CLUS_5             0              25
  CLUS_6             4              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        4      1      3
  BRAF WILD-TYPE    181     87     56
D4V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4            181
  CLUS_2            1             87
  CLUS_3            3             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        3      4      1
  BRAF WILD-TYPE    104     99    121
D4V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            104
  CLUS_2            4             99
  CLUS_3            1            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        4      2      1
  BRAF WILD-TYPE     84     55    103
D4V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4             84
  CLUS_2            2             55
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        2      3      1      1
  BRAF WILD-TYPE     56     79     65     42
D4V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             56
  CLUS_2            3             79
  CLUS_3            1             65
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      5      1
  BRAF WILD-TYPE    101     98    125
D4V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2            101
  CLUS_2            5             98
  CLUS_3            1            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      5      1
  BRAF WILD-TYPE    114    127     83
D4V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2            114
  CLUS_2            5            127
  CLUS_3            1             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        3      3      2
  BRAF WILD-TYPE    102    106    113
D4V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            102
  CLUS_2            3            106
  CLUS_3            2            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        4      1      0      2      1
  BRAF WILD-TYPE     96     67     39     70     49
D4V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4             96
  CLUS_2            1             67
  CLUS_3            0             39
  CLUS_4            2             70
  CLUS_5            1             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        1      0      1      2
  BRAF WILD-TYPE     49     50     35     73
D4V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             49
  CLUS_2            0             50
  CLUS_3            1             35
  CLUS_4            2             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRAF MUTATED        0      1      1      0      1      1
  BRAF WILD-TYPE     39     22     20     45     24     57
D4V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             39
  CLUS_2            1             22
  CLUS_3            1             20
  CLUS_4            0             45
  CLUS_5            1             24
  CLUS_6            1             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        5      3      1
  PTEN WILD-TYPE    180     85     58
D5V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5            180
  CLUS_2            3             85
  CLUS_3            1             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      2      6
  PTEN WILD-TYPE    106    101    116
D5V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            106
  CLUS_2            2            101
  CLUS_3            6            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      4      2
  PTEN WILD-TYPE     86     53    102
D5V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             86
  CLUS_2            4             53
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      4      1      1
  PTEN WILD-TYPE     56     78     65     42
D5V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             56
  CLUS_2            4             78
  CLUS_3            1             65
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      2      6
  PTEN WILD-TYPE    102    101    120
D5V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            102
  CLUS_2            2            101
  CLUS_3            6            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      2      6
  PTEN WILD-TYPE    115    130     78
D5V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            115
  CLUS_2            2            130
  CLUS_3            6             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        4      2      3
  PTEN WILD-TYPE    101    107    112
D5V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4            101
  CLUS_2            2            107
  CLUS_3            3            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        4      1      0      1      3
  PTEN WILD-TYPE     96     67     39     71     47
D5V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             96
  CLUS_2            1             67
  CLUS_3            0             39
  CLUS_4            1             71
  CLUS_5            3             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      2      1      3
  PTEN WILD-TYPE     49     48     35     72
D5V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             49
  CLUS_2            2             48
  CLUS_3            1             35
  CLUS_4            3             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        1      0      0      3      0      3
  PTEN WILD-TYPE     38     23     21     42     25     55
D5V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             38
  CLUS_2            0             23
  CLUS_3            0             21
  CLUS_4            3             42
  CLUS_5            0             25
  CLUS_6            3             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3      8      2
  ATM WILD-TYPE    182     80     57
D6V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           182
  CLUS_2           8            80
  CLUS_3           2            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        1      6      6
  ATM WILD-TYPE    106     97    116
D6V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1           106
  CLUS_2           6            97
  CLUS_3           6           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3      2      7
  ATM WILD-TYPE     85     55     97
D6V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            85
  CLUS_2           2            55
  CLUS_3           7            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        2      3      2      5
  ATM WILD-TYPE     56     79     64     38
D6V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            56
  CLUS_2           3            79
  CLUS_3           2            64
  CLUS_4           5            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3      5      5
  ATM WILD-TYPE    100     98    121
D6V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           100
  CLUS_2           5            98
  CLUS_3           5           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        2      8      3
  ATM WILD-TYPE    114    124     81
D6V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2           114
  CLUS_2           8           124
  CLUS_3           3            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        1      6      6
  ATM WILD-TYPE    104    103    109
D6V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1           104
  CLUS_2           6           103
  CLUS_3           6           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        2      4      2      3      2
  ATM WILD-TYPE     98     64     37     69     48
D6V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            98
  CLUS_2           4            64
  CLUS_3           2            37
  CLUS_4           3            69
  CLUS_5           2            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        1      3      0      4
  ATM WILD-TYPE     49     47     36     71
D6V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            49
  CLUS_2           3            47
  CLUS_3           0            36
  CLUS_4           4            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        0      1      1      2      1      3
  ATM WILD-TYPE     39     22     20     43     24     55
D6V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           0            39
  CLUS_2           1            22
  CLUS_3           1            20
  CLUS_4           2            43
  CLUS_5           1            24
  CLUS_6           3            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        4      3      1
  CTNNB1 WILD-TYPE    181     85     58
D7V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              4              181
  CLUS_2              3               85
  CLUS_3              1               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        0      2      6
  CTNNB1 WILD-TYPE    107    101    116
D7V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0              107
  CLUS_2              2              101
  CLUS_3              6              116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        0      1      4
  CTNNB1 WILD-TYPE     88     56    100
D7V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               56
  CLUS_3              4              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        0      1      1      3
  CTNNB1 WILD-TYPE     58     81     65     40
D7V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               58
  CLUS_2              1               81
  CLUS_3              1               65
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        1      2      5
  CTNNB1 WILD-TYPE    102    101    121
D7V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              2              101
  CLUS_3              5              121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        1      2      5
  CTNNB1 WILD-TYPE    115    130     79
D7V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              115
  CLUS_2              2              130
  CLUS_3              5               79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        1      2      5
  CTNNB1 WILD-TYPE    104    107    110
D7V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              104
  CLUS_2              2              107
  CLUS_3              5              110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        1      0      1      3      3
  CTNNB1 WILD-TYPE     99     68     38     69     47
D7V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               99
  CLUS_2              0               68
  CLUS_3              1               38
  CLUS_4              3               69
  CLUS_5              3               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        1      3      0      3
  CTNNB1 WILD-TYPE     49     47     36     72
D7V9, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              3               47
  CLUS_3              0               36
  CLUS_4              3               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        0      0      0      4      1      2
  CTNNB1 WILD-TYPE     39     23     21     41     24     56
D7V10, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              0               23
  CLUS_3              0               21
  CLUS_4              4               41
  CLUS_5              1               24
  CLUS_6              2               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = MED12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        2      0      4
  MED12 WILD-TYPE    183     88     55
D8V1, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             183
  CLUS_2             0              88
  CLUS_3             4              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        3      2      1
  MED12 WILD-TYPE    104    101    121
D8V2, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             3             104
  CLUS_2             2             101
  CLUS_3             1             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        3      1      1
  MED12 WILD-TYPE     85     56    103
D8V3, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              56
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        2      2      1      0
  MED12 WILD-TYPE     56     80     65     43
D8V4, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              56
  CLUS_2             2              80
  CLUS_3             1              65
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        2      3      1
  MED12 WILD-TYPE    101    100    125
D8V5, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             3             100
  CLUS_3             1             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        1      5      0
  MED12 WILD-TYPE    115    127     84
D8V6, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             1             115
  CLUS_2             5             127
  CLUS_3             0              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        2      2      2
  MED12 WILD-TYPE    103    107    113
D8V7, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             103
  CLUS_2             2             107
  CLUS_3             2             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        2      2      0      1      1
  MED12 WILD-TYPE     98     66     39     71     49
D8V8, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              98
  CLUS_2             2              66
  CLUS_3             0              39
  CLUS_4             1              71
  CLUS_5             1              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        0      1      2      0
  MED12 WILD-TYPE     50     49     34     75
D8V9, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             1              49
  CLUS_3             2              34
  CLUS_4             0              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED12 MUTATED        1      2      0      0      0      0
  MED12 WILD-TYPE     38     21     21     45     25     58
D8V10, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              21
  CLUS_3             0              21
  CLUS_4             0              45
  CLUS_5             0              25
  CLUS_6             0              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        2      0      4
  KDM6A WILD-TYPE    183     88     55
D9V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             183
  CLUS_2             0              88
  CLUS_3             4              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        1      4      1
  KDM6A WILD-TYPE    106     99    121
D9V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             106
  CLUS_2             4              99
  CLUS_3             1             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        3      1      1
  KDM6A WILD-TYPE     85     56    103
D9V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              56
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        1      1      2      1
  KDM6A WILD-TYPE     57     81     64     42
D9V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1              57
  CLUS_2             1              81
  CLUS_3             2              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        0      5      1
  KDM6A WILD-TYPE    103     98    125
D9V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0             103
  CLUS_2             5              98
  CLUS_3             1             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        1      4      1
  KDM6A WILD-TYPE    115    128     83
D9V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             115
  CLUS_2             4             128
  CLUS_3             1              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        2      3      1
  KDM6A WILD-TYPE    103    106    114
D9V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             103
  CLUS_2             3             106
  CLUS_3             1             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      3      0      0      1
  KDM6A WILD-TYPE     98     65     39     72     49
D9V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              98
  CLUS_2             3              65
  CLUS_3             0              39
  CLUS_4             0              72
  CLUS_5             1              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      0      1      3
  KDM6A WILD-TYPE     50     50     35     72
D9V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              50
  CLUS_2             0              50
  CLUS_3             1              35
  CLUS_4             3              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED        0      3      0      0      0      1
  KDM6A WILD-TYPE     39     20     21     45     25     57
D9V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              20
  CLUS_3             0              21
  CLUS_4             0              45
  CLUS_5             0              25
  CLUS_6             1              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        2      5      4
  MLL2 WILD-TYPE    183     83     55
D10V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            2            183
  CLUS_2            5             83
  CLUS_3            4             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        4      4      3
  MLL2 WILD-TYPE    103     99    119
D10V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            4            103
  CLUS_2            4             99
  CLUS_3            3            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        3      2      3
  MLL2 WILD-TYPE     85     55    101
D10V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             55
  CLUS_3            3            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        1      3      3      1
  MLL2 WILD-TYPE     57     79     63     42
D10V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            1             57
  CLUS_2            3             79
  CLUS_3            3             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        3      6      2
  MLL2 WILD-TYPE    100     97    124
D10V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3            100
  CLUS_2            6             97
  CLUS_3            2            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        6      5      0
  MLL2 WILD-TYPE    110    127     84
D10V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            6            110
  CLUS_2            5            127
  CLUS_3            0             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        3      5      3
  MLL2 WILD-TYPE    102    104    112
D10V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3            102
  CLUS_2            5            104
  CLUS_3            3            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        3      4      3      0      1
  MLL2 WILD-TYPE     97     64     36     72     49
D10V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3             97
  CLUS_2            4             64
  CLUS_3            3             36
  CLUS_4            0             72
  CLUS_5            1             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        0      2      2      2
  MLL2 WILD-TYPE     50     48     34     73
D10V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            2             48
  CLUS_3            2             34
  CLUS_4            2             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED        0      2      0      2      0      2
  MLL2 WILD-TYPE     39     21     21     43     25     56
D10V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            2             21
  CLUS_3            0             21
  CLUS_4            2             43
  CLUS_5            0             25
  CLUS_6            2             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AKT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        2      1      0
  AKT1 WILD-TYPE    183     87     59
D11V1, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2            183
  CLUS_2            1             87
  CLUS_3            0             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        0      0      3
  AKT1 WILD-TYPE    107    103    119
D11V2, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0            107
  CLUS_2            0            103
  CLUS_3            3            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        0      0      1
  AKT1 WILD-TYPE     88     57    103
D11V3, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             1            248 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-CH-5737     TCGA-CH-5738 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741     TCGA-CH-5744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5527     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7314 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789     TCGA-EJ-7791 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8474 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46G     TCGA-EJ-A65E     TCGA-EJ-A65F 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FS     TCGA-EJ-A8FU 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6342     TCGA-G9-6351 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6363 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377     TCGA-G9-6378 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6494     TCGA-G9-6499     TCGA-G9-7510 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-8264     TCGA-HC-A76X     TCGA-HI-7168 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67T     TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83N 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BL     TCGA-KC-A4BN     TCGA-KC-A4BR     TCGA-KC-A4BV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7FE     TCGA-KK-A59X     TCGA-KK-A59Y     TCGA-KK-A59Z 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A7AP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7AU     TCGA-KK-A7B1     TCGA-KK-A7B3     TCGA-KK-A7B4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8ID 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IF     TCGA-KK-A8IH     TCGA-KK-A8II     TCGA-KK-A8IJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A71Y     TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A725 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-V1-A8MF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8X3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88I     TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A875     TCGA-VP-A878     TCGA-VP-A87E     TCGA-VP-A87J 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A87K     TCGA-WW-A8ZI     TCGA-XA-A8JR     TCGA-Y6-A8TL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL     TCGA-YL-A8SP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SQ     TCGA-YL-A8SR     TCGA-YL-A9WI     TCGA-YL-A9WJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      0      1      0
  AKT1 WILD-TYPE     58     82     65     43
D11V4, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             1            248 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-CH-5737     TCGA-CH-5738 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741     TCGA-CH-5744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5527     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7314 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789     TCGA-EJ-7791 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8474 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46G     TCGA-EJ-A65E     TCGA-EJ-A65F 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FS     TCGA-EJ-A8FU 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6342     TCGA-G9-6351 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6363 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377     TCGA-G9-6378 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6494     TCGA-G9-6499     TCGA-G9-7510 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-8264     TCGA-HC-A76X     TCGA-HI-7168 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67T     TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83N 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BL     TCGA-KC-A4BN     TCGA-KC-A4BR     TCGA-KC-A4BV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7FE     TCGA-KK-A59X     TCGA-KK-A59Y     TCGA-KK-A59Z 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A7AP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7AU     TCGA-KK-A7B1     TCGA-KK-A7B3     TCGA-KK-A7B4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8ID 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IF     TCGA-KK-A8IH     TCGA-KK-A8II     TCGA-KK-A8IJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A71Y     TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A725 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-V1-A8MF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8X3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88I     TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A875     TCGA-VP-A878     TCGA-VP-A87E     TCGA-VP-A87J 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A87K     TCGA-WW-A8ZI     TCGA-XA-A8JR     TCGA-Y6-A8TL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL     TCGA-YL-A8SP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SQ     TCGA-YL-A8SR     TCGA-YL-A9WI     TCGA-YL-A9WJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        0      0      3
  AKT1 WILD-TYPE    103    103    123
D11V5, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            0            103
  CLUS_3            3            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        0      1      2
  AKT1 WILD-TYPE    116    131     82
D11V6, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0            116
  CLUS_2            1            131
  CLUS_3            2             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        1      1      1
  AKT1 WILD-TYPE    104    108    114
D11V7, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1            104
  CLUS_2            1            108
  CLUS_3            1            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKT1 MUTATED        1      1      0      1      0
  AKT1 WILD-TYPE     99     67     39     71     50
D11V8, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1             99
  CLUS_2            1             67
  CLUS_3            0             39
  CLUS_4            1             71
  CLUS_5            0             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      2      0      0
  AKT1 WILD-TYPE     50     48     36     75
D11V9, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             2            209 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65F 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NJ     TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6342 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6361     TCGA-G9-6365 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83K     TCGA-J9-A52B     TCGA-J9-A8CK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A6DY     TCGA-KK-A6E0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E5     TCGA-KK-A7B1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-M7-A720     TCGA-M7-A725     TCGA-QU-A6IP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-TK-A8OK     TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QZ 
"AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKT1 MUTATED        0      0      1      0      0      1
  AKT1 WILD-TYPE     39     23     20     45     25     57
D11V10, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             2            209 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65F 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NJ     TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6342 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6361     TCGA-G9-6365 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83K     TCGA-J9-A52B     TCGA-J9-A8CK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A6DY     TCGA-KK-A6E0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E5     TCGA-KK-A7B1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-M7-A720     TCGA-M7-A725     TCGA-QU-A6IP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-TK-A8OK     TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QZ 
"AKT1 WILD-TYPE" 

Clustering(12) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        3      1      0
  HRAS WILD-TYPE    182     87     59
D12V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3            182
  CLUS_2            1             87
  CLUS_3            0             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        2      1      1
  HRAS WILD-TYPE    105    102    121
D12V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2            105
  CLUS_2            1            102
  CLUS_3            1            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      1      1
  HRAS WILD-TYPE     87     56    103
D12V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             56
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        2      0      1      0
  HRAS WILD-TYPE     56     82     65     43
D12V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             56
  CLUS_2            0             82
  CLUS_3            1             65
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      2      1
  HRAS WILD-TYPE    102    101    125
D12V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            102
  CLUS_2            2            101
  CLUS_3            1            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      2      1
  HRAS WILD-TYPE    115    130     83
D12V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            115
  CLUS_2            2            130
  CLUS_3            1             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      2      1
  HRAS WILD-TYPE    104    107    114
D12V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            104
  CLUS_2            2            107
  CLUS_3            1            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        1      0      0      3      0
  HRAS WILD-TYPE     99     68     39     69     50
D12V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             99
  CLUS_2            0             68
  CLUS_3            0             39
  CLUS_4            3             69
  CLUS_5            0             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        1      0      1      1
  HRAS WILD-TYPE     49     50     35     74
D12V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             49
  CLUS_2            0             50
  CLUS_3            1             35
  CLUS_4            1             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HRAS MUTATED        1      0      0      0      0      2
  HRAS WILD-TYPE     38     23     21     45     25     56
D12V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             38
  CLUS_2            0             23
  CLUS_3            0             21
  CLUS_4            0             45
  CLUS_5            0             25
  CLUS_6            2             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = XPO5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO5 MUTATED        2      1      0
  XPO5 WILD-TYPE    183     87     59
D13V1, multiclass
        clus
vv       XPO5 MUTATED XPO5 WILD-TYPE
  CLUS_1            2            183
  CLUS_2            1             87
  CLUS_3            0             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO5 MUTATED        0      0      3
  XPO5 WILD-TYPE    107    103    119
D13V2, multiclass
        clus
vv       XPO5 MUTATED XPO5 WILD-TYPE
  CLUS_1            0            107
  CLUS_2            0            103
  CLUS_3            3            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO5 MUTATED        0      1      1
  XPO5 WILD-TYPE     88     56    103
D13V3, multiclass
[1] "Remove cluster labels:" "XPO5 MUTATED"          
clus
  XPO5 MUTATED XPO5 WILD-TYPE 
             2            247 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-CH-5737     TCGA-CH-5738 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5740     TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5748 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5753 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7314 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318     TCGA-EJ-7321 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789     TCGA-EJ-7791 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8474 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46G     TCGA-EJ-A65E     TCGA-EJ-A65F 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FS     TCGA-EJ-A8FU 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6342     TCGA-G9-6351 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6363 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6378     TCGA-G9-6384 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6494     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7521 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775     TCGA-HC-7077 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210     TCGA-HC-7211 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232     TCGA-HC-7233 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744     TCGA-HC-7748 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-A76X     TCGA-HI-7168     TCGA-HI-7170 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67T 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83N     TCGA-J9-A8CK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD     TCGA-KC-A7FE 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A59X     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A6E0 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A7AP     TCGA-KK-A7AU 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7B1     TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I4 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8     TCGA-KK-A8IA 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IH     TCGA-KK-A8II     TCGA-KK-A8IJ     TCGA-M7-A71Y 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A725     TCGA-QU-A6IP 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-V1-A8MF     TCGA-V1-A8MJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8X3     TCGA-VN-A88I 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A875 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A878     TCGA-VP-A87E     TCGA-VP-A87J     TCGA-VP-A87K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-WW-A8ZI     TCGA-XA-A8JR     TCGA-Y6-A8TL     TCGA-YJ-A8SW 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL     TCGA-YL-A8HM 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9     TCGA-YL-A8SA 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SL     TCGA-YL-A8SP     TCGA-YL-A8SQ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WI     TCGA-YL-A9WJ     TCGA-ZG-A8QW 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO5 MUTATED        0      1      0      1
  XPO5 WILD-TYPE     58     81     66     42
D13V4, multiclass
[1] "Remove cluster labels:" "XPO5 MUTATED"          
clus
  XPO5 MUTATED XPO5 WILD-TYPE 
             2            247 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-CH-5737     TCGA-CH-5738 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5740     TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5748 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5753 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7314 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318     TCGA-EJ-7321 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789     TCGA-EJ-7791 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8474 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46G     TCGA-EJ-A65E     TCGA-EJ-A65F 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FS     TCGA-EJ-A8FU 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6342     TCGA-G9-6351 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6363 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6378     TCGA-G9-6384 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6494     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7521 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775     TCGA-HC-7077 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210     TCGA-HC-7211 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232     TCGA-HC-7233 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744     TCGA-HC-7748 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-A76X     TCGA-HI-7168     TCGA-HI-7170 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67T 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83N     TCGA-J9-A8CK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD     TCGA-KC-A7FE 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A59X     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A6E0 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A7AP     TCGA-KK-A7AU 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7B1     TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I4 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8     TCGA-KK-A8IA 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IH     TCGA-KK-A8II     TCGA-KK-A8IJ     TCGA-M7-A71Y 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A725     TCGA-QU-A6IP 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-V1-A8MF     TCGA-V1-A8MJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8X3     TCGA-VN-A88I 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A875 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A878     TCGA-VP-A87E     TCGA-VP-A87J     TCGA-VP-A87K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-WW-A8ZI     TCGA-XA-A8JR     TCGA-Y6-A8TL     TCGA-YJ-A8SW 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL     TCGA-YL-A8HM 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9     TCGA-YL-A8SA 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SL     TCGA-YL-A8SP     TCGA-YL-A8SQ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WI     TCGA-YL-A9WJ     TCGA-ZG-A8QW 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO5 MUTATED        0      0      3
  XPO5 WILD-TYPE    103    103    123
D13V5, multiclass
        clus
vv       XPO5 MUTATED XPO5 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            0            103
  CLUS_3            3            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO5 MUTATED        1      0      2
  XPO5 WILD-TYPE    115    132     82
D13V6, multiclass
        clus
vv       XPO5 MUTATED XPO5 WILD-TYPE
  CLUS_1            1            115
  CLUS_2            0            132
  CLUS_3            2             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO5 MUTATED        0      0      2
  XPO5 WILD-TYPE    105    109    113
D13V7, multiclass
[1] "Remove cluster labels:" "XPO5 MUTATED"          
clus
  XPO5 MUTATED XPO5 WILD-TYPE 
             2            327 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-CH-5737     TCGA-CH-5738 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5740     TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5746 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5753 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7218 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46D 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65E     TCGA-EJ-A65F 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A65G     TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NF     TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FS 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-A5OB     TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6336     TCGA-G9-6342     TCGA-G9-6348     TCGA-G9-6351 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6363 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6378     TCGA-G9-6384 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6499     TCGA-G9-7510 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7081     TCGA-HC-7209 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7750     TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8213     TCGA-HC-8216     TCGA-HC-8256     TCGA-HC-8257 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A48F 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A76W 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A76X     TCGA-HC-A8CY     TCGA-HC-A8D0     TCGA-HC-A8D1 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83K     TCGA-J4-A83M 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A83N     TCGA-J9-A52B     TCGA-J9-A8CK     TCGA-J9-A8CL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD     TCGA-KC-A7FE 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A59X     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A6DY 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E5 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AV     TCGA-KK-A7B1 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I4     TCGA-KK-A8I5 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8I6     TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8II     TCGA-KK-A8IJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IK     TCGA-KK-A8IL     TCGA-M7-A720     TCGA-M7-A721 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-M7-A725     TCGA-QU-A6IP     TCGA-SU-A7E7     TCGA-TK-A8OK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MF     TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8ML 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8WN     TCGA-V1-A8WS 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88N     TCGA-VN-A88O 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88P     TCGA-VN-A88Q     TCGA-VN-A88R     TCGA-VP-A872 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A875     TCGA-VP-A876     TCGA-VP-A878     TCGA-VP-A879 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A87B     TCGA-VP-A87C     TCGA-VP-A87D     TCGA-VP-A87E 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A87H     TCGA-VP-A87J     TCGA-VP-A87K     TCGA-WW-A8ZI 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83G     TCGA-XJ-A83H     TCGA-XJ-A9DI 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XJ-A9DK     TCGA-XQ-A8TA     TCGA-XQ-A8TB     TCGA-Y6-A8TL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SB     TCGA-YL-A8SC     TCGA-YL-A8SF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SH     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SO     TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-YL-A9WI     TCGA-YL-A9WJ     TCGA-ZG-A8QW 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XPO5 MUTATED        0      0      1      0      1
  XPO5 WILD-TYPE    100     68     38     72     49
D13V8, multiclass
[1] "Remove cluster labels:" "XPO5 MUTATED"          
clus
  XPO5 MUTATED XPO5 WILD-TYPE 
             2            327 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-CH-5737     TCGA-CH-5738 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5740     TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5746 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5753 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7218 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46D 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65E     TCGA-EJ-A65F 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A65G     TCGA-EJ-A65J     TCGA-EJ-A6RA     TCGA-EJ-A6RC 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NF     TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FS 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-A5OB     TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6336     TCGA-G9-6342     TCGA-G9-6348     TCGA-G9-6351 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6363 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6378     TCGA-G9-6384 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6499     TCGA-G9-7510 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7081     TCGA-HC-7209 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7750     TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8213     TCGA-HC-8216     TCGA-HC-8256     TCGA-HC-8257 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A48F 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A76W 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A76X     TCGA-HC-A8CY     TCGA-HC-A8D0     TCGA-HC-A8D1 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83K     TCGA-J4-A83M 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A83N     TCGA-J9-A52B     TCGA-J9-A8CK     TCGA-J9-A8CL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD     TCGA-KC-A7FE 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A59X     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A6DY 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E5 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AV     TCGA-KK-A7B1 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I4     TCGA-KK-A8I5 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8I6     TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8II     TCGA-KK-A8IJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IK     TCGA-KK-A8IL     TCGA-M7-A720     TCGA-M7-A721 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-M7-A725     TCGA-QU-A6IP     TCGA-SU-A7E7     TCGA-TK-A8OK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MF     TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8ML 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8WN     TCGA-V1-A8WS 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88N     TCGA-VN-A88O 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88P     TCGA-VN-A88Q     TCGA-VN-A88R     TCGA-VP-A872 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A875     TCGA-VP-A876     TCGA-VP-A878     TCGA-VP-A879 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A87B     TCGA-VP-A87C     TCGA-VP-A87D     TCGA-VP-A87E 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A87H     TCGA-VP-A87J     TCGA-VP-A87K     TCGA-WW-A8ZI 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83G     TCGA-XJ-A83H     TCGA-XJ-A9DI 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XJ-A9DK     TCGA-XQ-A8TA     TCGA-XQ-A8TB     TCGA-Y6-A8TL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SB     TCGA-YL-A8SC     TCGA-YL-A8SF 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SH     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SO     TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-YL-A9WI     TCGA-YL-A9WJ     TCGA-ZG-A8QW 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO5 MUTATED        1      0      0      1
  XPO5 WILD-TYPE     49     50     36     74
D13V9, multiclass
[1] "Remove cluster labels:" "XPO5 MUTATED"          
clus
  XPO5 MUTATED XPO5 WILD-TYPE 
             2            209 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5741     TCGA-CH-5746     TCGA-CH-5750 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772     TCGA-CH-5789 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5497 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512     TCGA-EJ-5514 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522     TCGA-EJ-5524 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5542 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7782 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46D 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FU 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6342     TCGA-G9-6351 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6499 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7523     TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7078 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7818     TCGA-HC-7820 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A76W 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168     TCGA-HI-7170 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67T 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A6G1     TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A8CK     TCGA-J9-A8CL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BR     TCGA-KC-A4BV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59Y 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E5     TCGA-KK-A7B1     TCGA-KK-A7B3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A725     TCGA-QU-A6IP     TCGA-TK-A8OK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8WL     TCGA-V1-A8WV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-ZG-A8QZ 
"XPO5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XPO5 MUTATED        0      0      0      0      1      1
  XPO5 WILD-TYPE     39     23     21     45     24     57
D13V10, multiclass
[1] "Remove cluster labels:" "XPO5 MUTATED"          
clus
  XPO5 MUTATED XPO5 WILD-TYPE 
             2            209 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5741     TCGA-CH-5746     TCGA-CH-5750 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772     TCGA-CH-5789 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5497 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512     TCGA-EJ-5514 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522     TCGA-EJ-5524 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5542 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7782 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46D 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FU 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6342     TCGA-G9-6351 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6499 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-G9-7523     TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7078 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7818     TCGA-HC-7820 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A76W 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168     TCGA-HI-7170 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67T 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A6G1     TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A8CK     TCGA-J9-A8CL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BR     TCGA-KC-A4BV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59Y 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E5     TCGA-KK-A7B1     TCGA-KK-A7B3 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A725     TCGA-QU-A6IP     TCGA-TK-A8OK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8WL     TCGA-V1-A8WV 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" "XPO5 WILD-TYPE" 
    TCGA-ZG-A8QZ 
"XPO5 WILD-TYPE" 

Clustering(14) Variable = KLHL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL2 MUTATED        2      1      1
  KLHL2 WILD-TYPE    183     87     58
D14V1, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             2             183
  CLUS_2             1              87
  CLUS_3             1              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL2 MUTATED        1      2      1
  KLHL2 WILD-TYPE    106    101    121
D14V2, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             1             106
  CLUS_2             2             101
  CLUS_3             1             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL2 MUTATED        1      3      0
  KLHL2 WILD-TYPE     87     54    104
D14V3, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             3              54
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL2 MUTATED        2      1      0      1
  KLHL2 WILD-TYPE     56     81     66     42
D14V4, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             2              56
  CLUS_2             1              81
  CLUS_3             0              66
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL2 MUTATED        1      1      2
  KLHL2 WILD-TYPE    102    102    124
D14V5, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1             102
  CLUS_3             2             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL2 MUTATED        1      2      1
  KLHL2 WILD-TYPE    115    130     83
D14V6, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             1             115
  CLUS_2             2             130
  CLUS_3             1              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL2 MUTATED        2      1      1
  KLHL2 WILD-TYPE    103    108    114
D14V7, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             2             103
  CLUS_2             1             108
  CLUS_3             1             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL2 MUTATED        1      0      0      1      2
  KLHL2 WILD-TYPE     99     68     39     71     48
D14V8, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             1              99
  CLUS_2             0              68
  CLUS_3             0              39
  CLUS_4             1              71
  CLUS_5             2              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL2 MUTATED        2      1      0      1
  KLHL2 WILD-TYPE     48     49     36     74
D14V9, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              49
  CLUS_3             0              36
  CLUS_4             1              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHL2 MUTATED        1      0      0      1      1      1
  KLHL2 WILD-TYPE     38     23     21     44     24     57
D14V10, multiclass
        clus
vv       KLHL2 MUTATED KLHL2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             0              23
  CLUS_3             0              21
  CLUS_4             1              44
  CLUS_5             1              24
  CLUS_6             1              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = ZMYM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        3      1      2
  ZMYM3 WILD-TYPE    182     87     57
D15V1, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3             182
  CLUS_2             1              87
  CLUS_3             2              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        1      3      2
  ZMYM3 WILD-TYPE    106    100    120
D15V2, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             106
  CLUS_2             3             100
  CLUS_3             2             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        3      0      2
  ZMYM3 WILD-TYPE     85     57    102
D15V3, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              57
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        2      1      1      1
  ZMYM3 WILD-TYPE     56     81     65     42
D15V4, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2              56
  CLUS_2             1              81
  CLUS_3             1              65
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        2      1      3
  ZMYM3 WILD-TYPE    101    102    123
D15V5, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1             102
  CLUS_3             3             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        1      3      2
  ZMYM3 WILD-TYPE    115    129     82
D15V6, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             115
  CLUS_2             3             129
  CLUS_3             2              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        1      2      3
  ZMYM3 WILD-TYPE    104    107    112
D15V7, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             104
  CLUS_2             2             107
  CLUS_3             3             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        2      1      2      1      0
  ZMYM3 WILD-TYPE     98     67     37     71     50
D15V8, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2              98
  CLUS_2             1              67
  CLUS_3             2              37
  CLUS_4             1              71
  CLUS_5             0              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        3      2      0      0
  ZMYM3 WILD-TYPE     47     48     36     75
D15V9, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             2              48
  CLUS_3             0              36
  CLUS_4             0              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM3 MUTATED        0      0      0      2      3      0
  ZMYM3 WILD-TYPE     39     23     21     43     22     58
D15V10, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             0              23
  CLUS_3             0              21
  CLUS_4             2              43
  CLUS_5             3              22
  CLUS_6             0              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMFR MUTATED        1      0      2
  AMFR WILD-TYPE    184     88     57
D16V1, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            1            184
  CLUS_2            0             88
  CLUS_3            2             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMFR MUTATED        1      1      1
  AMFR WILD-TYPE    106    102    121
D16V2, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            1            106
  CLUS_2            1            102
  CLUS_3            1            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMFR MUTATED        2      0      1
  AMFR WILD-TYPE     86     57    103
D16V3, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             57
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMFR MUTATED        2      1      0      0
  AMFR WILD-TYPE     56     81     66     43
D16V4, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            2             56
  CLUS_2            1             81
  CLUS_3            0             66
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMFR MUTATED        1      1      1
  AMFR WILD-TYPE    102    102    125
D16V5, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            1            102
  CLUS_2            1            102
  CLUS_3            1            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMFR MUTATED        1      1      1
  AMFR WILD-TYPE    115    131     83
D16V6, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            1            115
  CLUS_2            1            131
  CLUS_3            1             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMFR MUTATED        0      2      1
  AMFR WILD-TYPE    105    107    114
D16V7, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            0            105
  CLUS_2            2            107
  CLUS_3            1            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMFR MUTATED        0      1      0      0      2
  AMFR WILD-TYPE    100     67     39     72     48
D16V8, multiclass
        clus
vv       AMFR MUTATED AMFR WILD-TYPE
  CLUS_1            0            100
  CLUS_2            1             67
  CLUS_3            0             39
  CLUS_4            0             72
  CLUS_5            2             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMFR MUTATED        0      0      0      2
  AMFR WILD-TYPE     50     50     36     73
D16V9, multiclass
[1] "Remove cluster labels:" "AMFR MUTATED"          
clus
  AMFR MUTATED AMFR WILD-TYPE 
             2            209 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7314 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7782 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46D 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FU 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6342     TCGA-G9-6353 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6377     TCGA-G9-6499 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-7523     TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7078 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7818     TCGA-HC-7820 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A76W 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168     TCGA-HI-7170 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67T 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-J4-A6G1     TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83K 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A8CK     TCGA-J9-A8CL 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BR     TCGA-KC-A4BV 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59Y 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E5     TCGA-KK-A7B1     TCGA-KK-A7B3 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A725     TCGA-QU-A6IP     TCGA-TK-A8OK 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8WL     TCGA-V1-A8WV 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-ZG-A8QZ 
"AMFR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMFR MUTATED        0      1      0      0      0      1
  AMFR WILD-TYPE     39     22     21     45     25     57
D16V10, multiclass
[1] "Remove cluster labels:" "AMFR MUTATED"          
clus
  AMFR MUTATED AMFR WILD-TYPE 
             2            209 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7314 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7782 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46D 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FU 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6342     TCGA-G9-6353 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6377     TCGA-G9-6499 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-G9-7523     TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7078 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7818     TCGA-HC-7820 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A76W 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168     TCGA-HI-7170 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67T 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-J4-A6G1     TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83K 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A8CK     TCGA-J9-A8CL 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BR     TCGA-KC-A4BV 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59Y 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E5     TCGA-KK-A7B1     TCGA-KK-A7B3 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I8 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A725     TCGA-QU-A6IP     TCGA-TK-A8OK 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8WL     TCGA-V1-A8WV 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" "AMFR WILD-TYPE" 
    TCGA-ZG-A8QZ 
"AMFR WILD-TYPE" 

Clustering(17) Variable = IL6ST MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL6ST MUTATED        0      2      1
  IL6ST WILD-TYPE    185     86     58
D17V1, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             0             185
  CLUS_2             2              86
  CLUS_3             1              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL6ST MUTATED        1      1      1
  IL6ST WILD-TYPE    106    102    121
D17V2, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             1             106
  CLUS_2             1             102
  CLUS_3             1             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL6ST MUTATED        1      0      2
  IL6ST WILD-TYPE     87     57    102
D17V3, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              57
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6ST MUTATED        1      0      1      1
  IL6ST WILD-TYPE     57     82     65     42
D17V4, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             1              57
  CLUS_2             0              82
  CLUS_3             1              65
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL6ST MUTATED        2      1      0
  IL6ST WILD-TYPE    101    102    126
D17V5, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1             102
  CLUS_3             0             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL6ST MUTATED        1      2      0
  IL6ST WILD-TYPE    115    130     84
D17V6, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             1             115
  CLUS_2             2             130
  CLUS_3             0              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL6ST MUTATED        2      0      1
  IL6ST WILD-TYPE    103    109    114
D17V7, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             2             103
  CLUS_2             0             109
  CLUS_3             1             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL6ST MUTATED        2      0      0      1      0
  IL6ST WILD-TYPE     98     68     39     71     50
D17V8, multiclass
        clus
vv       IL6ST MUTATED IL6ST WILD-TYPE
  CLUS_1             2              98
  CLUS_2             0              68
  CLUS_3             0              39
  CLUS_4             1              71
  CLUS_5             0              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6ST MUTATED        2      0      0      0
  IL6ST WILD-TYPE     48     50     36     75
D17V9, multiclass
[1] "Remove cluster labels:" "IL6ST MUTATED"         
clus
  IL6ST MUTATED IL6ST WILD-TYPE 
              2             209 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5527      TCGA-EJ-5542 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46D 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-A46G      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FU 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0      TCGA-G9-6329 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6342      TCGA-G9-6351 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6361      TCGA-G9-6365      TCGA-G9-6377 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-HC-7075 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081      TCGA-HC-7209 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233      TCGA-HC-7737 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7747 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7818 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7820      TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-8261      TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-8266      TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-J4-A83K      TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A8CK 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BR 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA      TCGA-KC-A7FE 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A59Y      TCGA-KK-A59Z      TCGA-KK-A6DY      TCGA-KK-A6E0 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E5      TCGA-KK-A7B1 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA      TCGA-KK-A8IB 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH      TCGA-KK-A8IJ 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A8IL      TCGA-M7-A720      TCGA-M7-A725      TCGA-QU-A6IP 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ      TCGA-V1-A8WL 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-V1-A8WV      TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-VN-A88K      TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-XA-A8JR      TCGA-XJ-A83H      TCGA-XJ-A9DI      TCGA-XJ-A9DK 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-XQ-A8TB      TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-YL-A8HO      TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-YL-A8SJ      TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-YL-A9WH      TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-ZG-A8QZ 
"IL6ST WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL6ST MUTATED        1      0      0      0      1      0
  IL6ST WILD-TYPE     38     23     21     45     24     58
D17V10, multiclass
[1] "Remove cluster labels:" "IL6ST MUTATED"         
clus
  IL6ST MUTATED IL6ST WILD-TYPE 
              2             209 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5527      TCGA-EJ-5542 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46D 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-A46G      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FU 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0      TCGA-G9-6329 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6342      TCGA-G9-6351 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6361      TCGA-G9-6365      TCGA-G9-6377 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-HC-7075 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081      TCGA-HC-7209 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233      TCGA-HC-7737 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7747 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7818 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-7820      TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-8261      TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-8266      TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-J4-A83K      TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A8CK 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BR 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA      TCGA-KC-A7FE 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A59Y      TCGA-KK-A59Z      TCGA-KK-A6DY      TCGA-KK-A6E0 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E5      TCGA-KK-A7B1 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA      TCGA-KK-A8IB 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH      TCGA-KK-A8IJ 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-KK-A8IL      TCGA-M7-A720      TCGA-M7-A725      TCGA-QU-A6IP 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ      TCGA-V1-A8WL 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-V1-A8WV      TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-VN-A88K      TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-XA-A8JR      TCGA-XJ-A83H      TCGA-XJ-A9DI      TCGA-XJ-A9DK 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-XQ-A8TB      TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-YL-A8HO      TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-YL-A8SJ      TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-YL-A9WH      TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY 
"IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" "IL6ST WILD-TYPE" 
     TCGA-ZG-A8QZ 
"IL6ST WILD-TYPE" 

Clustering(18) Variable = CDK12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        1      5      0
  CDK12 WILD-TYPE    184     83     59
D18V1, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             184
  CLUS_2             5              83
  CLUS_3             0              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        0      3      3
  CDK12 WILD-TYPE    107    100    119
D18V2, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0             107
  CLUS_2             3             100
  CLUS_3             3             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        0      1      4
  CDK12 WILD-TYPE     88     56    100
D18V3, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              56
  CLUS_3             4             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        0      1      0      4
  CDK12 WILD-TYPE     58     81     66     39
D18V4, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0              58
  CLUS_2             1              81
  CLUS_3             0              66
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        1      2      3
  CDK12 WILD-TYPE    102    101    123
D18V5, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2             101
  CLUS_3             3             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        0      4      2
  CDK12 WILD-TYPE    116    128     82
D18V6, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0             116
  CLUS_2             4             128
  CLUS_3             2              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        1      0      5
  CDK12 WILD-TYPE    104    109    110
D18V7, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             104
  CLUS_2             0             109
  CLUS_3             5             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        0      1      1      3      1
  CDK12 WILD-TYPE    100     67     38     69     49
D18V8, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0             100
  CLUS_2             1              67
  CLUS_3             1              38
  CLUS_4             3              69
  CLUS_5             1              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      1      0      2
  CDK12 WILD-TYPE     49     49     36     73
D18V9, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              49
  CLUS_3             0              36
  CLUS_4             2              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDK12 MUTATED        0      0      0      1      1      2
  CDK12 WILD-TYPE     39     23     21     44     24     56
D18V10, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             0              23
  CLUS_3             0              21
  CLUS_4             1              44
  CLUS_5             1              24
  CLUS_6             2              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = NKX3-1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        4      0      0
  NKX3-1 WILD-TYPE    181     88     59
D19V1, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              4              181
  CLUS_2              0               88
  CLUS_3              0               59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        1      1      2
  NKX3-1 WILD-TYPE    106    102    120
D19V2, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              1              106
  CLUS_2              1              102
  CLUS_3              2              120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        0      3      1
  NKX3-1 WILD-TYPE     88     54    103
D19V3, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              3               54
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKX3-1 MUTATED        0      3      1      0
  NKX3-1 WILD-TYPE     58     79     65     43
D19V4, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              0               58
  CLUS_2              3               79
  CLUS_3              1               65
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        0      2      2
  NKX3-1 WILD-TYPE    103    101    124
D19V5, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              2              101
  CLUS_3              2              124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        0      2      2
  NKX3-1 WILD-TYPE    116    130     82
D19V6, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              0              116
  CLUS_2              2              130
  CLUS_3              2               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        1      3      0
  NKX3-1 WILD-TYPE    104    106    115
D19V7, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              1              104
  CLUS_2              3              106
  CLUS_3              0              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKX3-1 MUTATED        1      2      0      0      1
  NKX3-1 WILD-TYPE     99     66     39     72     49
D19V8, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              1               99
  CLUS_2              2               66
  CLUS_3              0               39
  CLUS_4              0               72
  CLUS_5              1               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKX3-1 MUTATED        2      0      0      0
  NKX3-1 WILD-TYPE     48     50     36     75
D19V9, multiclass
[1] "Remove cluster labels:" "NKX3-1 MUTATED"        
clus
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               2              209 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-EJ-5494       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542       TCGA-EJ-7115 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793       TCGA-EJ-7794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469       TCGA-EJ-8470 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46D       TCGA-EJ-A46G 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FU       TCGA-FC-7708 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6333 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6336       TCGA-G9-6342       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6377       TCGA-G9-6499 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7523       TCGA-H9-7775       TCGA-HC-7075       TCGA-HC-7078 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209       TCGA-HC-7210 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737       TCGA-HC-7740 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7818       TCGA-HC-7820 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A76W 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168       TCGA-HI-7170 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67T 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I       TCGA-J4-A83K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A8CK       TCGA-J9-A8CL 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BR       TCGA-KC-A4BV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KC-A7F3       TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59Y 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A6E2       TCGA-KK-A6E5       TCGA-KK-A7B1       TCGA-KK-A7B3 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6       TCGA-KK-A8I8 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8I9       TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8IG       TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-M7-A720       TCGA-M7-A725       TCGA-QU-A6IP       TCGA-TK-A8OK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8MG       TCGA-V1-A8MJ       TCGA-V1-A8WL       TCGA-V1-A8WV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-XA-A8JR       TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-XQ-A8TB       TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A9WH       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-ZG-A8QZ 
"NKX3-1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NKX3-1 MUTATED        0      0      0      0      2      0
  NKX3-1 WILD-TYPE     39     23     21     45     23     58
D19V10, multiclass
[1] "Remove cluster labels:" "NKX3-1 MUTATED"        
clus
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               2              209 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-EJ-5494       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542       TCGA-EJ-7115 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793       TCGA-EJ-7794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469       TCGA-EJ-8470 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46D       TCGA-EJ-A46G 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FU       TCGA-FC-7708 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6333 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6336       TCGA-G9-6342       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6377       TCGA-G9-6499 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7523       TCGA-H9-7775       TCGA-HC-7075       TCGA-HC-7078 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209       TCGA-HC-7210 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737       TCGA-HC-7740 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7818       TCGA-HC-7820 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A76W 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168       TCGA-HI-7170 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67T 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I       TCGA-J4-A83K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A8CK       TCGA-J9-A8CL 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BR       TCGA-KC-A4BV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KC-A7F3       TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59Y 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A6E2       TCGA-KK-A6E5       TCGA-KK-A7B1       TCGA-KK-A7B3 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6       TCGA-KK-A8I8 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8I9       TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8IG       TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-M7-A720       TCGA-M7-A725       TCGA-QU-A6IP       TCGA-TK-A8OK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8MG       TCGA-V1-A8MJ       TCGA-V1-A8WL       TCGA-V1-A8WV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-XA-A8JR       TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-XQ-A8TB       TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A9WH       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-ZG-A8QZ 
"NKX3-1 WILD-TYPE" 

Clustering(20) Variable = IRF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF4 MUTATED        2      1      1
  IRF4 WILD-TYPE    183     87     58
D20V1, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            2            183
  CLUS_2            1             87
  CLUS_3            1             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF4 MUTATED        1      1      2
  IRF4 WILD-TYPE    106    102    120
D20V2, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            1            106
  CLUS_2            1            102
  CLUS_3            2            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF4 MUTATED        1      0      2
  IRF4 WILD-TYPE     87     57    102
D20V3, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             57
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF4 MUTATED        1      1      0      1
  IRF4 WILD-TYPE     57     81     66     42
D20V4, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            1             57
  CLUS_2            1             81
  CLUS_3            0             66
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF4 MUTATED        1      1      2
  IRF4 WILD-TYPE    102    102    124
D20V5, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            1            102
  CLUS_2            1            102
  CLUS_3            2            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF4 MUTATED        2      1      1
  IRF4 WILD-TYPE    114    131     83
D20V6, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            2            114
  CLUS_2            1            131
  CLUS_3            1             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF4 MUTATED        0      3      1
  IRF4 WILD-TYPE    105    106    114
D20V7, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            0            105
  CLUS_2            3            106
  CLUS_3            1            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF4 MUTATED        0      0      1      1      2
  IRF4 WILD-TYPE    100     68     38     71     48
D20V8, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            0            100
  CLUS_2            0             68
  CLUS_3            1             38
  CLUS_4            1             71
  CLUS_5            2             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF4 MUTATED        0      0      0      3
  IRF4 WILD-TYPE     50     50     36     72
D20V9, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            0             50
  CLUS_3            0             36
  CLUS_4            3             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRF4 MUTATED        0      0      0      0      0      3
  IRF4 WILD-TYPE     39     23     21     45     25     55
D20V10, multiclass
        clus
vv       IRF4 MUTATED IRF4 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            0             23
  CLUS_3            0             21
  CLUS_4            0             45
  CLUS_5            0             25
  CLUS_6            3             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = ASH1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        4      1      2
  ASH1L WILD-TYPE    181     87     57
D21V1, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             4             181
  CLUS_2             1              87
  CLUS_3             2              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        1      3      3
  ASH1L WILD-TYPE    106    100    119
D21V2, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1             106
  CLUS_2             3             100
  CLUS_3             3             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        1      3      2
  ASH1L WILD-TYPE     87     54    102
D21V3, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1              87
  CLUS_2             3              54
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASH1L MUTATED        1      3      1      1
  ASH1L WILD-TYPE     57     79     65     42
D21V4, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1              57
  CLUS_2             3              79
  CLUS_3             1              65
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        0      4      3
  ASH1L WILD-TYPE    103     99    123
D21V5, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             0             103
  CLUS_2             4              99
  CLUS_3             3             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        1      4      2
  ASH1L WILD-TYPE    115    128     82
D21V6, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1             115
  CLUS_2             4             128
  CLUS_3             2              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        3      0      4
  ASH1L WILD-TYPE    102    109    111
D21V7, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             3             102
  CLUS_2             0             109
  CLUS_3             4             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASH1L MUTATED        3      0      0      2      2
  ASH1L WILD-TYPE     97     68     39     70     48
D21V8, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             3              97
  CLUS_2             0              68
  CLUS_3             0              39
  CLUS_4             2              70
  CLUS_5             2              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASH1L MUTATED        1      1      0      1
  ASH1L WILD-TYPE     49     49     36     74
D21V9, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              49
  CLUS_3             0              36
  CLUS_4             1              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASH1L MUTATED        0      0      0      2      1      0
  ASH1L WILD-TYPE     39     23     21     43     24     58
D21V10, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             0              39
  CLUS_2             0              23
  CLUS_3             0              21
  CLUS_4             2              43
  CLUS_5             1              24
  CLUS_6             0              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = MLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        6      6      1
  MLL3 WILD-TYPE    179     82     58
D22V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            6            179
  CLUS_2            6             82
  CLUS_3            1             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        4      3      6
  MLL3 WILD-TYPE    103    100    116
D22V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            4            103
  CLUS_2            3            100
  CLUS_3            6            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        3      2      4
  MLL3 WILD-TYPE     85     55    100
D22V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             55
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        0      3      4      2
  MLL3 WILD-TYPE     58     79     62     41
D22V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            0             58
  CLUS_2            3             79
  CLUS_3            4             62
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        3      4      6
  MLL3 WILD-TYPE    100     99    120
D22V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3            100
  CLUS_2            4             99
  CLUS_3            6            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        5      3      5
  MLL3 WILD-TYPE    111    129     79
D22V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            5            111
  CLUS_2            3            129
  CLUS_3            5             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        3      3      7
  MLL3 WILD-TYPE    102    106    108
D22V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3            102
  CLUS_2            3            106
  CLUS_3            7            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        2      3      4      3      1
  MLL3 WILD-TYPE     98     65     35     69     49
D22V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            2             98
  CLUS_2            3             65
  CLUS_3            4             35
  CLUS_4            3             69
  CLUS_5            1             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        2      5      0      3
  MLL3 WILD-TYPE     48     45     36     72
D22V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            5             45
  CLUS_3            0             36
  CLUS_4            3             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL3 MUTATED        2      0      1      4      1      2
  MLL3 WILD-TYPE     37     23     20     41     24     56
D22V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            0             23
  CLUS_3            1             20
  CLUS_4            4             41
  CLUS_5            1             24
  CLUS_6            2             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
