[1] "ofn"        "-oTSKCM-TM"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/20140641/SKCM-TM.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/19784514/transformed.cor.cli.txt"

nPatients in clinical file=368, in cluster file=366, common to both=366
[1]  55 366
[1] "AMP PEAK  1(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                        121                         245 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                        121                         245 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          203                           163 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          203                           163 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        201                         165 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        201                         165 
[1] "AMP PEAK  4(3P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                        103                         263 
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                        103                         263 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         65                         301 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         65                         301 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           110                            256 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           110                            256 
[1] "AMP PEAK  7(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           59                           307 
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           59                           307 
[1] "AMP PEAK  8(6P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE 
                          210                           156 
  AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE 
                          210                           156 
[1] "AMP PEAK  9(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         80                         286 
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         80                         286 
[1] "AMP PEAK 10(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          208                           158 
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          208                           158 
[1] "AMP PEAK 11(7Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        224                         142 
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        224                         142 
[1] "AMP PEAK 12(8Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           163                            203 
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           163                            203 
[1] "AMP PEAK 13(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           191                            175 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           191                            175 
[1] "AMP PEAK 14(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            69                            297 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            69                            297 
[1] "AMP PEAK 15(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE 
                            58                            308 
  AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE 
                            58                            308 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          59                          307 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          59                          307 
[1] "AMP PEAK 17(13Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                           104                            262 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                           104                            262 
[1] "AMP PEAK 18(15Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE 
                           119                            247 
  AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE 
                           119                            247 
[1] "AMP PEAK 19(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                           122                            244 
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                           122                            244 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            69                            297 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            69                            297 
[1] "AMP PEAK 21(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE 
                            187                             179 
  AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE 
                            187                             179 
[1] "AMP PEAK 22(22Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                           151                            215 
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                           151                            215 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            81                            285 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            81                            285 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           97                           269 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           97                           269 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           93                           273 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           93                           273 
[1] "DEL PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE 
                           71                           295 
  DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE 
                           71                           295 
[1] "DEL PEAK  5(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            62                            304 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            62                            304 
[1] "DEL PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           91                           275 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           91                           275 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          110                           256 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          110                           256 
[1] "DEL PEAK  8(5P15.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE 
                            79                            287 
  DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE 
                            79                            287 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           97                           269 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           97                           269 
[1] "DEL PEAK 10(5Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE 
                          131                           235 
  DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE 
                          131                           235 
[1] "DEL PEAK 11(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                           215                            151 
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                           215                            151 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        221                         145 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        221                         145 
[1] "DEL PEAK 13(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           89                           277 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           89                           277 
[1] "DEL PEAK 14(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        249                         117 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        249                         117 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          278                            88 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          278                            88 
[1] "DEL PEAK 16(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           199                            167 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           199                            167 
[1] "DEL PEAK 17(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                           217                            149 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                           217                            149 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            230                             136 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            230                             136 
[1] "DEL PEAK 19(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           236                            130 
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           236                            130 
[1] "DEL PEAK 20(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           114                            252 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           114                            252 
[1] "DEL PEAK 21(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE 
                           202                            164 
  DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE 
                           202                            164 
[1] "DEL PEAK 22(12Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE 
                            92                            274 
  DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE 
                            92                            274 
[1] "DEL PEAK 23(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE 
                          85                          281 
  DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE 
                          85                          281 
[1] "DEL PEAK 24(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                           120                            246 
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                           120                            246 
[1] "DEL PEAK 25(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE 
                            117                             249 
  DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE 
                            117                             249 
[1] "DEL PEAK 26(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE 
                            84                            282 
  DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE 
                            84                            282 
[1] "DEL PEAK 27(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE 
                            91                            275 
  DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE 
                            91                            275 
[1] "DEL PEAK 28(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            62                            304 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            62                            304 
[1] "DEL PEAK 29(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE 
                           117                            249 
  DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE 
                           117                            249 
[1] "DEL PEAK 30(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE 
                           133                            233 
  DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE 
                           133                            233 
[1] "DEL PEAK 31(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE 
                           135                            231 
  DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE 
                           135                            231 
[1] "DEL PEAK 32(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                           104                            262 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                           104                            262 
[1] "DEL PEAK 33(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           87                           279 
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           87                           279 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 366 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 366 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       43     37     41
  AMP PEAK  1(1P12) WILD-TYPE     58    102     85
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        43                          58
  CLUS_2                        37                         102
  CLUS_3                        41                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       41     48     32
  AMP PEAK  1(1P12) WILD-TYPE     88     96     61
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        41                          88
  CLUS_2                        48                          96
  CLUS_3                        32                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       16     16     12     11
  AMP PEAK  1(1P12) WILD-TYPE     34     35     30     15
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        16                          34
  CLUS_2                        16                          35
  CLUS_3                        12                          30
  CLUS_4                        11                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       10     18     10     17
  AMP PEAK  1(1P12) WILD-TYPE     17     40     25     32
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        10                          17
  CLUS_2                        18                          40
  CLUS_3                        10                          25
  CLUS_4                        17                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       50     29     42
  AMP PEAK  1(1P12) WILD-TYPE     87     75     83
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        50                          87
  CLUS_2                        29                          75
  CLUS_3                        42                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       39     29     29     24
  AMP PEAK  1(1P12) WILD-TYPE     68     76     67     34
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        39                          68
  CLUS_2                        29                          76
  CLUS_3                        29                          67
  CLUS_4                        24                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P12) MUTATED       22     30     44      2     15
  AMP PEAK  1(1P12) WILD-TYPE     51     64     74     19     29
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        22                          51
  CLUS_2                        30                          64
  CLUS_3                        44                          74
  CLUS_4                         2                          19
  CLUS_5                        15                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       43     25     32     13
  AMP PEAK  1(1P12) WILD-TYPE     89     68     55     25
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        43                          89
  CLUS_2                        25                          68
  CLUS_3                        32                          55
  CLUS_4                        13                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       29     38     42
  AMP PEAK  1(1P12) WILD-TYPE     65     70     92
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        29                          65
  CLUS_2                        38                          70
  CLUS_3                        42                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       54     21     22     12
  AMP PEAK  1(1P12) WILD-TYPE    106     49     54     18
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        54                         106
  CLUS_2                        21                          49
  CLUS_3                        22                          54
  CLUS_4                        12                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       92     51     60
  AMP PEAK  2(1Q21.3) WILD-TYPE      9     88     66
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          92                             9
  CLUS_2                          51                            88
  CLUS_3                          60                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       72     71     60
  AMP PEAK  2(1Q21.3) WILD-TYPE     57     73     33
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          72                            57
  CLUS_2                          71                            73
  CLUS_3                          60                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       27     27     18     15
  AMP PEAK  2(1Q21.3) WILD-TYPE     23     24     24     11
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          27                            23
  CLUS_2                          27                            24
  CLUS_3                          18                            24
  CLUS_4                          15                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       14     29     15     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     13     29     20     20
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            13
  CLUS_2                          29                            29
  CLUS_3                          15                            20
  CLUS_4                          29                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       87     44     72
  AMP PEAK  2(1Q21.3) WILD-TYPE     50     60     53
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          87                            50
  CLUS_2                          44                            60
  CLUS_3                          72                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       64     52     53     34
  AMP PEAK  2(1Q21.3) WILD-TYPE     43     53     43     24
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          64                            43
  CLUS_2                          52                            53
  CLUS_3                          53                            43
  CLUS_4                          34                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       34     51     72      5     31
  AMP PEAK  2(1Q21.3) WILD-TYPE     39     43     46     16     13
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          34                            39
  CLUS_2                          51                            43
  CLUS_3                          72                            46
  CLUS_4                           5                            16
  CLUS_5                          31                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       80     40     47     26
  AMP PEAK  2(1Q21.3) WILD-TYPE     52     53     40     12
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          80                            52
  CLUS_2                          40                            53
  CLUS_3                          47                            40
  CLUS_4                          26                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       46     58     82
  AMP PEAK  2(1Q21.3) WILD-TYPE     48     50     52
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          46                            48
  CLUS_2                          58                            50
  CLUS_3                          82                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       91     38     35     22
  AMP PEAK  2(1Q21.3) WILD-TYPE     69     32     41      8
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          91                            69
  CLUS_2                          38                            32
  CLUS_3                          35                            41
  CLUS_4                          22                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       90     50     61
  AMP PEAK  3(1Q44) WILD-TYPE     11     89     65
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        90                          11
  CLUS_2                        50                          89
  CLUS_3                        61                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       74     66     61
  AMP PEAK  3(1Q44) WILD-TYPE     55     78     32
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        74                          55
  CLUS_2                        66                          78
  CLUS_3                        61                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       27     27     20     18
  AMP PEAK  3(1Q44) WILD-TYPE     23     24     22      8
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        27                          23
  CLUS_2                        27                          24
  CLUS_3                        20                          22
  CLUS_4                        18                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       14     30     15     33
  AMP PEAK  3(1Q44) WILD-TYPE     13     28     20     16
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                          13
  CLUS_2                        30                          28
  CLUS_3                        15                          20
  CLUS_4                        33                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       83     44     74
  AMP PEAK  3(1Q44) WILD-TYPE     54     60     51
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        83                          54
  CLUS_2                        44                          60
  CLUS_3                        74                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       65     51     53     32
  AMP PEAK  3(1Q44) WILD-TYPE     42     54     43     26
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        65                          42
  CLUS_2                        51                          54
  CLUS_3                        53                          43
  CLUS_4                        32                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       31     48     71      9     33
  AMP PEAK  3(1Q44) WILD-TYPE     42     46     47     12     11
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        31                          42
  CLUS_2                        48                          46
  CLUS_3                        71                          47
  CLUS_4                         9                          12
  CLUS_5                        33                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       77     39     47     29
  AMP PEAK  3(1Q44) WILD-TYPE     55     54     40      9
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        77                          55
  CLUS_2                        39                          54
  CLUS_3                        47                          40
  CLUS_4                        29                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       43     58     85
  AMP PEAK  3(1Q44) WILD-TYPE     51     50     49
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        43                          51
  CLUS_2                        58                          50
  CLUS_3                        85                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       89     37     35     25
  AMP PEAK  3(1Q44) WILD-TYPE     71     33     41      5
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        89                          71
  CLUS_2                        37                          33
  CLUS_3                        35                          41
  CLUS_4                        25                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       30     31     42
  AMP PEAK  4(3P13) WILD-TYPE     71    108     84
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        30                          71
  CLUS_2                        31                         108
  CLUS_3                        42                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       35     45     23
  AMP PEAK  4(3P13) WILD-TYPE     94     99     70
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        35                          94
  CLUS_2                        45                          99
  CLUS_3                        23                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       20     11     13      8
  AMP PEAK  4(3P13) WILD-TYPE     30     40     29     18
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        20                          30
  CLUS_2                        11                          40
  CLUS_3                        13                          29
  CLUS_4                         8                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       11     11     15     15
  AMP PEAK  4(3P13) WILD-TYPE     16     47     20     34
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        11                          16
  CLUS_2                        11                          47
  CLUS_3                        15                          20
  CLUS_4                        15                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       41     31     31
  AMP PEAK  4(3P13) WILD-TYPE     96     73     94
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        41                          96
  CLUS_2                        31                          73
  CLUS_3                        31                          94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       26     34     23     20
  AMP PEAK  4(3P13) WILD-TYPE     81     71     73     38
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        26                          81
  CLUS_2                        34                          71
  CLUS_3                        23                          73
  CLUS_4                        20                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P13) MUTATED       19     27     35      3     13
  AMP PEAK  4(3P13) WILD-TYPE     54     67     83     18     31
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        19                          54
  CLUS_2                        27                          67
  CLUS_3                        35                          83
  CLUS_4                         3                          18
  CLUS_5                        13                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       46     19     22     10
  AMP PEAK  4(3P13) WILD-TYPE     86     74     65     28
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        46                          86
  CLUS_2                        19                          74
  CLUS_3                        22                          65
  CLUS_4                        10                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       29     29     36
  AMP PEAK  4(3P13) WILD-TYPE     65     79     98
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        29                          65
  CLUS_2                        29                          79
  CLUS_3                        36                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       47     21     19      7
  AMP PEAK  4(3P13) WILD-TYPE    113     49     57     23
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        47                         113
  CLUS_2                        21                          49
  CLUS_3                        19                          57
  CLUS_4                         7                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       22     13     30
  AMP PEAK  5(4Q12) WILD-TYPE     79    126     96
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        22                          79
  CLUS_2                        13                         126
  CLUS_3                        30                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       24     20     21
  AMP PEAK  5(4Q12) WILD-TYPE    105    124     72
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        24                         105
  CLUS_2                        20                         124
  CLUS_3                        21                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        5     13     10      7
  AMP PEAK  5(4Q12) WILD-TYPE     45     38     32     19
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                          45
  CLUS_2                        13                          38
  CLUS_3                        10                          32
  CLUS_4                         7                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        3     13      9     10
  AMP PEAK  5(4Q12) WILD-TYPE     24     45     26     39
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          24
  CLUS_2                        13                          45
  CLUS_3                         9                          26
  CLUS_4                        10                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       25     16     24
  AMP PEAK  5(4Q12) WILD-TYPE    112     88    101
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        25                         112
  CLUS_2                        16                          88
  CLUS_3                        24                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       23     23     10      9
  AMP PEAK  5(4Q12) WILD-TYPE     84     82     86     49
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        23                          84
  CLUS_2                        23                          82
  CLUS_3                        10                          86
  CLUS_4                         9                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        9     13     32      3      8
  AMP PEAK  5(4Q12) WILD-TYPE     64     81     86     18     36
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         9                          64
  CLUS_2                        13                          81
  CLUS_3                        32                          86
  CLUS_4                         3                          18
  CLUS_5                         8                          36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       38      8     14      5
  AMP PEAK  5(4Q12) WILD-TYPE     94     85     73     33
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        38                          94
  CLUS_2                         8                          85
  CLUS_3                        14                          73
  CLUS_4                         5                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       19     16     28
  AMP PEAK  5(4Q12) WILD-TYPE     75     92    106
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        19                          75
  CLUS_2                        16                          92
  CLUS_3                        28                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       33     16     10      4
  AMP PEAK  5(4Q12) WILD-TYPE    127     54     66     26
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        33                         127
  CLUS_2                        16                          54
  CLUS_3                        10                          66
  CLUS_4                         4                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       31     24     55
  AMP PEAK  6(5P15.33) WILD-TYPE     70    115     71
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           24                            115
  CLUS_3                           55                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       42     35     33
  AMP PEAK  6(5P15.33) WILD-TYPE     87    109     60
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           42                             87
  CLUS_2                           35                            109
  CLUS_3                           33                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       13     14     14      8
  AMP PEAK  6(5P15.33) WILD-TYPE     37     37     28     18
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                           14                             37
  CLUS_3                           14                             28
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED        8     15      9     17
  AMP PEAK  6(5P15.33) WILD-TYPE     19     43     26     32
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           15                             43
  CLUS_3                            9                             26
  CLUS_4                           17                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       46     22     42
  AMP PEAK  6(5P15.33) WILD-TYPE     91     82     83
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           46                             91
  CLUS_2                           22                             82
  CLUS_3                           42                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       37     27     28     18
  AMP PEAK  6(5P15.33) WILD-TYPE     70     78     68     40
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           37                             70
  CLUS_2                           27                             78
  CLUS_3                           28                             68
  CLUS_4                           18                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED       22     15     41     10     16
  AMP PEAK  6(5P15.33) WILD-TYPE     51     79     77     11     28
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                           15                             79
  CLUS_3                           41                             77
  CLUS_4                           10                             11
  CLUS_5                           16                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       44     21     25     14
  AMP PEAK  6(5P15.33) WILD-TYPE     88     72     62     24
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           44                             88
  CLUS_2                           21                             72
  CLUS_3                           25                             62
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       27     27     46
  AMP PEAK  6(5P15.33) WILD-TYPE     67     81     88
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           27                             67
  CLUS_2                           27                             81
  CLUS_3                           46                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       55     15     18     12
  AMP PEAK  6(5P15.33) WILD-TYPE    105     55     58     18
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           55                            105
  CLUS_2                           15                             55
  CLUS_3                           18                             58
  CLUS_4                           12                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       21      9     29
  AMP PEAK  7(5Q35.3) WILD-TYPE     80    130     97
D7V1, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          21                            80
  CLUS_2                           9                           130
  CLUS_3                          29                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       19     13     27
  AMP PEAK  7(5Q35.3) WILD-TYPE    110    131     66
D7V2, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          19                           110
  CLUS_2                          13                           131
  CLUS_3                          27                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED        3      8      9      7
  AMP PEAK  7(5Q35.3) WILD-TYPE     47     43     33     19
D7V3, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           3                            47
  CLUS_2                           8                            43
  CLUS_3                           9                            33
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED        3      4      7     13
  AMP PEAK  7(5Q35.3) WILD-TYPE     24     54     28     36
D7V4, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           4                            54
  CLUS_3                           7                            28
  CLUS_4                          13                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       26      8     25
  AMP PEAK  7(5Q35.3) WILD-TYPE    111     96    100
D7V5, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          26                           111
  CLUS_2                           8                            96
  CLUS_3                          25                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       20     14     18      7
  AMP PEAK  7(5Q35.3) WILD-TYPE     87     91     78     51
D7V6, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          20                            87
  CLUS_2                          14                            91
  CLUS_3                          18                            78
  CLUS_4                           7                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5Q35.3) MUTATED       11     12     22      4      6
  AMP PEAK  7(5Q35.3) WILD-TYPE     62     82     96     17     38
D7V7, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          11                            62
  CLUS_2                          12                            82
  CLUS_3                          22                            96
  CLUS_4                           4                            17
  CLUS_5                           6                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       26      9     16      4
  AMP PEAK  7(5Q35.3) WILD-TYPE    106     84     71     34
D7V8, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          26                           106
  CLUS_2                           9                            84
  CLUS_3                          16                            71
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       16     12     25
  AMP PEAK  7(5Q35.3) WILD-TYPE     78     96    109
D7V9, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          16                            78
  CLUS_2                          12                            96
  CLUS_3                          25                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       29      8     12      4
  AMP PEAK  7(5Q35.3) WILD-TYPE    131     62     64     26
D7V10, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          29                           131
  CLUS_2                           8                            62
  CLUS_3                          12                            64
  CLUS_4                           4                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       78     57     75
  AMP PEAK  8(6P24.3) WILD-TYPE     23     82     51
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          78                            23
  CLUS_2                          57                            82
  CLUS_3                          75                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       79     61     70
  AMP PEAK  8(6P24.3) WILD-TYPE     50     83     23
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          79                            50
  CLUS_2                          61                            83
  CLUS_3                          70                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       25     35     20     15
  AMP PEAK  8(6P24.3) WILD-TYPE     25     16     22     11
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          25                            25
  CLUS_2                          35                            16
  CLUS_3                          20                            22
  CLUS_4                          15                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       12     38     13     32
  AMP PEAK  8(6P24.3) WILD-TYPE     15     20     22     17
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                          38                            20
  CLUS_3                          13                            22
  CLUS_4                          32                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       87     49     74
  AMP PEAK  8(6P24.3) WILD-TYPE     50     55     51
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          87                            50
  CLUS_2                          49                            55
  CLUS_3                          74                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       71     65     42     32
  AMP PEAK  8(6P24.3) WILD-TYPE     36     40     54     26
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          71                            36
  CLUS_2                          65                            40
  CLUS_3                          42                            54
  CLUS_4                          32                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P24.3) MUTATED       39     47     81      8     26
  AMP PEAK  8(6P24.3) WILD-TYPE     34     47     37     13     18
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          39                            34
  CLUS_2                          47                            47
  CLUS_3                          81                            37
  CLUS_4                           8                            13
  CLUS_5                          26                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       91     35     54     21
  AMP PEAK  8(6P24.3) WILD-TYPE     41     58     33     17
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          91                            41
  CLUS_2                          35                            58
  CLUS_3                          54                            33
  CLUS_4                          21                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       45     55     92
  AMP PEAK  8(6P24.3) WILD-TYPE     49     53     42
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          45                            49
  CLUS_2                          55                            53
  CLUS_3                          92                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED      105     42     28     17
  AMP PEAK  8(6P24.3) WILD-TYPE     55     28     48     13
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                         105                            55
  CLUS_2                          42                            28
  CLUS_3                          28                            48
  CLUS_4                          17                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       26     29     25
  AMP PEAK  9(6Q12) WILD-TYPE     75    110    101
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        26                          75
  CLUS_2                        29                         110
  CLUS_3                        25                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       27     29     24
  AMP PEAK  9(6Q12) WILD-TYPE    102    115     69
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        27                         102
  CLUS_2                        29                         115
  CLUS_3                        24                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED        9     13      6      8
  AMP PEAK  9(6Q12) WILD-TYPE     41     38     36     18
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         9                          41
  CLUS_2                        13                          38
  CLUS_3                         6                          36
  CLUS_4                         8                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED        3     18      4     11
  AMP PEAK  9(6Q12) WILD-TYPE     24     40     31     38
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         3                          24
  CLUS_2                        18                          40
  CLUS_3                         4                          31
  CLUS_4                        11                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       29     27     24
  AMP PEAK  9(6Q12) WILD-TYPE    108     77    101
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        29                         108
  CLUS_2                        27                          77
  CLUS_3                        24                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       21     31     14     14
  AMP PEAK  9(6Q12) WILD-TYPE     86     74     82     44
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        21                          86
  CLUS_2                        31                          74
  CLUS_3                        14                          82
  CLUS_4                        14                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q12) MUTATED       20     22     29      1      5
  AMP PEAK  9(6Q12) WILD-TYPE     53     72     89     20     39
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        20                          53
  CLUS_2                        22                          72
  CLUS_3                        29                          89
  CLUS_4                         1                          20
  CLUS_5                         5                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       35     14     24      4
  AMP PEAK  9(6Q12) WILD-TYPE     97     79     63     34
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        35                          97
  CLUS_2                        14                          79
  CLUS_3                        24                          63
  CLUS_4                         4                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       19     21     34
  AMP PEAK  9(6Q12) WILD-TYPE     75     87    100
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        19                          75
  CLUS_2                        21                          87
  CLUS_3                        34                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       43     14     14      3
  AMP PEAK  9(6Q12) WILD-TYPE    117     56     62     27
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        43                         117
  CLUS_2                        14                          56
  CLUS_3                        14                          62
  CLUS_4                         3                          27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       62     55     91
  AMP PEAK 10(7P22.1) WILD-TYPE     39     84     35
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          62                            39
  CLUS_2                          55                            84
  CLUS_3                          91                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       74     79     55
  AMP PEAK 10(7P22.1) WILD-TYPE     55     65     38
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          74                            55
  CLUS_2                          79                            65
  CLUS_3                          55                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       26     31     20     14
  AMP PEAK 10(7P22.1) WILD-TYPE     24     20     22     12
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          26                            24
  CLUS_2                          31                            20
  CLUS_3                          20                            22
  CLUS_4                          14                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       15     31     14     31
  AMP PEAK 10(7P22.1) WILD-TYPE     12     27     21     18
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          15                            12
  CLUS_2                          31                            27
  CLUS_3                          14                            21
  CLUS_4                          31                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       73     52     83
  AMP PEAK 10(7P22.1) WILD-TYPE     64     52     42
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          73                            64
  CLUS_2                          52                            52
  CLUS_3                          83                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       64     60     59     25
  AMP PEAK 10(7P22.1) WILD-TYPE     43     45     37     33
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          64                            43
  CLUS_2                          60                            45
  CLUS_3                          59                            37
  CLUS_4                          25                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       41     49     64     15     27
  AMP PEAK 10(7P22.1) WILD-TYPE     32     45     54      6     17
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          41                            32
  CLUS_2                          49                            45
  CLUS_3                          64                            54
  CLUS_4                          15                             6
  CLUS_5                          27                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       70     57     45     24
  AMP PEAK 10(7P22.1) WILD-TYPE     62     36     42     14
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          70                            62
  CLUS_2                          57                            36
  CLUS_3                          45                            42
  CLUS_4                          24                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       54     62     73
  AMP PEAK 10(7P22.1) WILD-TYPE     40     46     61
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          54                            40
  CLUS_2                          62                            46
  CLUS_3                          73                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       86     34     50     19
  AMP PEAK 10(7P22.1) WILD-TYPE     74     36     26     11
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          86                            74
  CLUS_2                          34                            36
  CLUS_3                          50                            26
  CLUS_4                          19                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       64     66     94
  AMP PEAK 11(7Q34) WILD-TYPE     37     73     32
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        64                          37
  CLUS_2                        66                          73
  CLUS_3                        94                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       82     90     52
  AMP PEAK 11(7Q34) WILD-TYPE     47     54     41
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        82                          47
  CLUS_2                        90                          54
  CLUS_3                        52                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       26     32     28     19
  AMP PEAK 11(7Q34) WILD-TYPE     24     19     14      7
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        26                          24
  CLUS_2                        32                          19
  CLUS_3                        28                          14
  CLUS_4                        19                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       16     36     21     32
  AMP PEAK 11(7Q34) WILD-TYPE     11     22     14     17
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        16                          11
  CLUS_2                        36                          22
  CLUS_3                        21                          14
  CLUS_4                        32                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       79     60     85
  AMP PEAK 11(7Q34) WILD-TYPE     58     44     40
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        79                          58
  CLUS_2                        60                          44
  CLUS_3                        85                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       60     61     66     37
  AMP PEAK 11(7Q34) WILD-TYPE     47     44     30     21
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        60                          47
  CLUS_2                        61                          44
  CLUS_3                        66                          30
  CLUS_4                        37                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q34) MUTATED       42     54     74     12     31
  AMP PEAK 11(7Q34) WILD-TYPE     31     40     44      9     13
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        42                          31
  CLUS_2                        54                          40
  CLUS_3                        74                          44
  CLUS_4                        12                           9
  CLUS_5                        31                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       74     54     58     27
  AMP PEAK 11(7Q34) WILD-TYPE     58     39     29     11
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        74                          58
  CLUS_2                        54                          39
  CLUS_3                        58                          29
  CLUS_4                        27                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       64     69     72
  AMP PEAK 11(7Q34) WILD-TYPE     30     39     62
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        64                          30
  CLUS_2                        69                          39
  CLUS_3                        72                          62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       93     41     50     21
  AMP PEAK 11(7Q34) WILD-TYPE     67     29     26      9
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        93                          67
  CLUS_2                        41                          29
  CLUS_3                        50                          26
  CLUS_4                        21                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       35     39     89
  AMP PEAK 12(8Q11.21) WILD-TYPE     66    100     37
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           35                             66
  CLUS_2                           39                            100
  CLUS_3                           89                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       47     60     56
  AMP PEAK 12(8Q11.21) WILD-TYPE     82     84     37
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           47                             82
  CLUS_2                           60                             84
  CLUS_3                           56                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       20     21     17     14
  AMP PEAK 12(8Q11.21) WILD-TYPE     30     30     25     12
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           20                             30
  CLUS_2                           21                             30
  CLUS_3                           17                             25
  CLUS_4                           14                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       13     28     16     15
  AMP PEAK 12(8Q11.21) WILD-TYPE     14     30     19     34
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           13                             14
  CLUS_2                           28                             30
  CLUS_3                           16                             19
  CLUS_4                           15                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       57     38     68
  AMP PEAK 12(8Q11.21) WILD-TYPE     80     66     57
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           57                             80
  CLUS_2                           38                             66
  CLUS_3                           68                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       56     43     48     16
  AMP PEAK 12(8Q11.21) WILD-TYPE     51     62     48     42
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           56                             51
  CLUS_2                           43                             62
  CLUS_3                           48                             48
  CLUS_4                           16                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q11.21) MUTATED       31     45     52      9     18
  AMP PEAK 12(8Q11.21) WILD-TYPE     42     49     66     12     26
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           31                             42
  CLUS_2                           45                             49
  CLUS_3                           52                             66
  CLUS_4                            9                             12
  CLUS_5                           18                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       66     35     39     15
  AMP PEAK 12(8Q11.21) WILD-TYPE     66     58     48     23
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           66                             66
  CLUS_2                           35                             58
  CLUS_3                           39                             48
  CLUS_4                           15                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       37     50     62
  AMP PEAK 12(8Q11.21) WILD-TYPE     57     58     72
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           37                             57
  CLUS_2                           50                             58
  CLUS_3                           62                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       70     33     34     12
  AMP PEAK 12(8Q11.21) WILD-TYPE     90     37     42     18
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           70                             90
  CLUS_2                           33                             37
  CLUS_3                           34                             42
  CLUS_4                           12                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       47     48     96
  AMP PEAK 13(8Q24.21) WILD-TYPE     54     91     30
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           47                             54
  CLUS_2                           48                             91
  CLUS_3                           96                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       58     71     62
  AMP PEAK 13(8Q24.21) WILD-TYPE     71     73     31
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           58                             71
  CLUS_2                           71                             73
  CLUS_3                           62                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       24     26     22     16
  AMP PEAK 13(8Q24.21) WILD-TYPE     26     25     20     10
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           24                             26
  CLUS_2                           26                             25
  CLUS_3                           22                             20
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       15     30     19     24
  AMP PEAK 13(8Q24.21) WILD-TYPE     12     28     16     25
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                           30                             28
  CLUS_3                           19                             16
  CLUS_4                           24                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       71     43     77
  AMP PEAK 13(8Q24.21) WILD-TYPE     66     61     48
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           71                             66
  CLUS_2                           43                             61
  CLUS_3                           77                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       59     52     55     25
  AMP PEAK 13(8Q24.21) WILD-TYPE     48     53     41     33
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           59                             48
  CLUS_2                           52                             53
  CLUS_3                           55                             41
  CLUS_4                           25                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q24.21) MUTATED       34     52     63     12     22
  AMP PEAK 13(8Q24.21) WILD-TYPE     39     42     55      9     22
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           34                             39
  CLUS_2                           52                             42
  CLUS_3                           63                             55
  CLUS_4                           12                              9
  CLUS_5                           22                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       78     40     46     19
  AMP PEAK 13(8Q24.21) WILD-TYPE     54     53     41     19
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           78                             54
  CLUS_2                           40                             53
  CLUS_3                           46                             41
  CLUS_4                           19                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       45     56     75
  AMP PEAK 13(8Q24.21) WILD-TYPE     49     52     59
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           45                             49
  CLUS_2                           56                             52
  CLUS_3                           75                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       84     38     40     14
  AMP PEAK 13(8Q24.21) WILD-TYPE     76     32     36     16
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           84                             76
  CLUS_2                           38                             32
  CLUS_3                           40                             36
  CLUS_4                           14                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       17     21     31
  AMP PEAK 14(11Q13.3) WILD-TYPE     84    118     95
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           17                             84
  CLUS_2                           21                            118
  CLUS_3                           31                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       18     27     24
  AMP PEAK 14(11Q13.3) WILD-TYPE    111    117     69
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           18                            111
  CLUS_2                           27                            117
  CLUS_3                           24                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       11     12      8      4
  AMP PEAK 14(11Q13.3) WILD-TYPE     39     39     34     22
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           12                             39
  CLUS_3                            8                             34
  CLUS_4                            4                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED        6     13      8      8
  AMP PEAK 14(11Q13.3) WILD-TYPE     21     45     27     41
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           13                             45
  CLUS_3                            8                             27
  CLUS_4                            8                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       31     15     23
  AMP PEAK 14(11Q13.3) WILD-TYPE    106     89    102
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           31                            106
  CLUS_2                           15                             89
  CLUS_3                           23                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       21     17     16     15
  AMP PEAK 14(11Q13.3) WILD-TYPE     86     88     80     43
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           21                             86
  CLUS_2                           17                             88
  CLUS_3                           16                             80
  CLUS_4                           15                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q13.3) MUTATED       15     21     21      4      4
  AMP PEAK 14(11Q13.3) WILD-TYPE     58     73     97     17     40
D14V7, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           15                             58
  CLUS_2                           21                             73
  CLUS_3                           21                             97
  CLUS_4                            4                             17
  CLUS_5                            4                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       30     15     18      2
  AMP PEAK 14(11Q13.3) WILD-TYPE    102     78     69     36
D14V8, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           30                            102
  CLUS_2                           15                             78
  CLUS_3                           18                             69
  CLUS_4                            2                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       19     18     24
  AMP PEAK 14(11Q13.3) WILD-TYPE     75     90    110
D14V9, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           19                             75
  CLUS_2                           18                             90
  CLUS_3                           24                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       32     15     12      2
  AMP PEAK 14(11Q13.3) WILD-TYPE    128     55     64     28
D14V10, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           32                            128
  CLUS_2                           15                             55
  CLUS_3                           12                             64
  CLUS_4                            2                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       16     12     30
  AMP PEAK 15(12Q14.1) WILD-TYPE     85    127     96
D15V1, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           12                            127
  CLUS_3                           30                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       20     19     19
  AMP PEAK 15(12Q14.1) WILD-TYPE    109    125     74
D15V2, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           20                            109
  CLUS_2                           19                            125
  CLUS_3                           19                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       10     10      6      5
  AMP PEAK 15(12Q14.1) WILD-TYPE     40     41     36     21
D15V3, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                           10                             41
  CLUS_3                            6                             36
  CLUS_4                            5                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED        5      7      6     13
  AMP PEAK 15(12Q14.1) WILD-TYPE     22     51     29     36
D15V4, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            7                             51
  CLUS_3                            6                             29
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       25      9     24
  AMP PEAK 15(12Q14.1) WILD-TYPE    112     95    101
D15V5, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           25                            112
  CLUS_2                            9                             95
  CLUS_3                           24                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       20     12     16     10
  AMP PEAK 15(12Q14.1) WILD-TYPE     87     93     80     48
D15V6, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           20                             87
  CLUS_2                           12                             93
  CLUS_3                           16                             80
  CLUS_4                           10                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12Q14.1) MUTATED       11     15     23      1      7
  AMP PEAK 15(12Q14.1) WILD-TYPE     62     79     95     20     37
D15V7, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           11                             62
  CLUS_2                           15                             79
  CLUS_3                           23                             95
  CLUS_4                            1                             20
  CLUS_5                            7                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       19     11     19      8
  AMP PEAK 15(12Q14.1) WILD-TYPE    113     82     68     30
D15V8, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           19                            113
  CLUS_2                           11                             82
  CLUS_3                           19                             68
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       11     21     25
  AMP PEAK 15(12Q14.1) WILD-TYPE     83     87    109
D15V9, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           11                             83
  CLUS_2                           21                             87
  CLUS_3                           25                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       31      9     12      5
  AMP PEAK 15(12Q14.1) WILD-TYPE    129     61     64     25
D15V10, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           31                            129
  CLUS_2                            9                             61
  CLUS_3                           12                             64
  CLUS_4                            5                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       18     15     26
  AMP PEAK 16(12Q15) WILD-TYPE     83    124    100
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         18                           83
  CLUS_2                         15                          124
  CLUS_3                         26                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       26     18     15
  AMP PEAK 16(12Q15) WILD-TYPE    103    126     78
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         26                          103
  CLUS_2                         18                          126
  CLUS_3                         15                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        9      9      6      6
  AMP PEAK 16(12Q15) WILD-TYPE     41     42     36     20
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          9                           41
  CLUS_2                          9                           42
  CLUS_3                          6                           36
  CLUS_4                          6                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        5      7      6     12
  AMP PEAK 16(12Q15) WILD-TYPE     22     51     29     37
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          5                           22
  CLUS_2                          7                           51
  CLUS_3                          6                           29
  CLUS_4                         12                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       26     10     23
  AMP PEAK 16(12Q15) WILD-TYPE    111     94    102
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         26                          111
  CLUS_2                         10                           94
  CLUS_3                         23                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       23     11     16      9
  AMP PEAK 16(12Q15) WILD-TYPE     84     94     80     49
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         23                           84
  CLUS_2                         11                           94
  CLUS_3                         16                           80
  CLUS_4                          9                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED        9     16     25      1      8
  AMP PEAK 16(12Q15) WILD-TYPE     64     78     93     20     36
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          9                           64
  CLUS_2                         16                           78
  CLUS_3                         25                           93
  CLUS_4                          1                           20
  CLUS_5                          8                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       20     12     18      9
  AMP PEAK 16(12Q15) WILD-TYPE    112     81     69     29
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         20                          112
  CLUS_2                         12                           81
  CLUS_3                         18                           69
  CLUS_4                          9                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       13     19     27
  AMP PEAK 16(12Q15) WILD-TYPE     81     89    107
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         13                           81
  CLUS_2                         19                           89
  CLUS_3                         27                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       33      6     14      6
  AMP PEAK 16(12Q15) WILD-TYPE    127     64     62     24
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         33                          127
  CLUS_2                          6                           64
  CLUS_3                         14                           62
  CLUS_4                          6                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(13Q31.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q31.3) MUTATED       34     19     51
  AMP PEAK 17(13Q31.3) WILD-TYPE     67    120     75
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           34                             67
  CLUS_2                           19                            120
  CLUS_3                           51                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q31.3) MUTATED       37     23     44
  AMP PEAK 17(13Q31.3) WILD-TYPE     92    121     49
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           37                             92
  CLUS_2                           23                            121
  CLUS_3                           44                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED       11     17     11      5
  AMP PEAK 17(13Q31.3) WILD-TYPE     39     34     31     21
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           17                             34
  CLUS_3                           11                             31
  CLUS_4                            5                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED        7     19      5     13
  AMP PEAK 17(13Q31.3) WILD-TYPE     20     39     30     36
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                           19                             39
  CLUS_3                            5                             30
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q31.3) MUTATED       31     21     52
  AMP PEAK 17(13Q31.3) WILD-TYPE    106     83     73
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           31                            106
  CLUS_2                           21                             83
  CLUS_3                           52                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED       35     31     33      5
  AMP PEAK 17(13Q31.3) WILD-TYPE     72     74     63     53
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           35                             72
  CLUS_2                           31                             74
  CLUS_3                           33                             63
  CLUS_4                            5                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(13Q31.3) MUTATED       17     29     35      8      9
  AMP PEAK 17(13Q31.3) WILD-TYPE     56     65     83     13     35
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                           29                             65
  CLUS_3                           35                             83
  CLUS_4                            8                             13
  CLUS_5                            9                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED       42     26     22      8
  AMP PEAK 17(13Q31.3) WILD-TYPE     90     67     65     30
D17V8, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           42                             90
  CLUS_2                           26                             67
  CLUS_3                           22                             65
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q31.3) MUTATED       20     31     45
  AMP PEAK 17(13Q31.3) WILD-TYPE     74     77     89
D17V9, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           20                             74
  CLUS_2                           31                             77
  CLUS_3                           45                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED       46     20     23      7
  AMP PEAK 17(13Q31.3) WILD-TYPE    114     50     53     23
D17V10, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           46                            114
  CLUS_2                           20                             50
  CLUS_3                           23                             53
  CLUS_4                            7                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(15Q26.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(15Q26.2) MUTATED       30     32     57
  AMP PEAK 18(15Q26.2) WILD-TYPE     71    107     69
D18V1, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           32                            107
  CLUS_3                           57                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(15Q26.2) MUTATED       37     45     37
  AMP PEAK 18(15Q26.2) WILD-TYPE     92     99     56
D18V2, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           37                             92
  CLUS_2                           45                             99
  CLUS_3                           37                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(15Q26.2) MUTATED       17     15     15      9
  AMP PEAK 18(15Q26.2) WILD-TYPE     33     36     27     17
D18V3, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           17                             33
  CLUS_2                           15                             36
  CLUS_3                           15                             27
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(15Q26.2) MUTATED        8     18     11     19
  AMP PEAK 18(15Q26.2) WILD-TYPE     19     40     24     30
D18V4, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           18                             40
  CLUS_3                           11                             24
  CLUS_4                           19                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(15Q26.2) MUTATED       40     30     49
  AMP PEAK 18(15Q26.2) WILD-TYPE     97     74     76
D18V5, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           40                             97
  CLUS_2                           30                             74
  CLUS_3                           49                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(15Q26.2) MUTATED       30     33     37     19
  AMP PEAK 18(15Q26.2) WILD-TYPE     77     72     59     39
D18V6, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           30                             77
  CLUS_2                           33                             72
  CLUS_3                           37                             59
  CLUS_4                           19                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(15Q26.2) MUTATED       22     35     33      7     15
  AMP PEAK 18(15Q26.2) WILD-TYPE     51     59     85     14     29
D18V7, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                           35                             59
  CLUS_3                           33                             85
  CLUS_4                            7                             14
  CLUS_5                           15                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(15Q26.2) MUTATED       45     32     22     13
  AMP PEAK 18(15Q26.2) WILD-TYPE     87     61     65     25
D18V8, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           45                             87
  CLUS_2                           32                             61
  CLUS_3                           22                             65
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(15Q26.2) MUTATED       37     36     35
  AMP PEAK 18(15Q26.2) WILD-TYPE     57     72     99
D18V9, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           37                             57
  CLUS_2                           36                             72
  CLUS_3                           35                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(15Q26.2) MUTATED       47     23     27     11
  AMP PEAK 18(15Q26.2) WILD-TYPE    113     47     49     19
D18V10, multiclass
        clus
vv       AMP PEAK 18(15Q26.2) MUTATED AMP PEAK 18(15Q26.2) WILD-TYPE
  CLUS_1                           47                            113
  CLUS_2                           23                             47
  CLUS_3                           27                             49
  CLUS_4                           11                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q25.3) MUTATED       50     33     39
  AMP PEAK 19(17Q25.3) WILD-TYPE     51    106     87
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           50                             51
  CLUS_2                           33                            106
  CLUS_3                           39                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q25.3) MUTATED       43     39     40
  AMP PEAK 19(17Q25.3) WILD-TYPE     86    105     53
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           43                             86
  CLUS_2                           39                            105
  CLUS_3                           40                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q25.3) MUTATED       13     21     17     15
  AMP PEAK 19(17Q25.3) WILD-TYPE     37     30     25     11
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                           21                             30
  CLUS_3                           17                             25
  CLUS_4                           15                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q25.3) MUTATED        9     22      9     26
  AMP PEAK 19(17Q25.3) WILD-TYPE     18     36     26     23
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                           22                             36
  CLUS_3                            9                             26
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q25.3) MUTATED       51     34     37
  AMP PEAK 19(17Q25.3) WILD-TYPE     86     70     88
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           51                             86
  CLUS_2                           34                             70
  CLUS_3                           37                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q25.3) MUTATED       32     40     22     28
  AMP PEAK 19(17Q25.3) WILD-TYPE     75     65     74     30
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           32                             75
  CLUS_2                           40                             65
  CLUS_3                           22                             74
  CLUS_4                           28                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q25.3) MUTATED       25     30     44      5     16
  AMP PEAK 19(17Q25.3) WILD-TYPE     48     64     74     16     28
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           25                             48
  CLUS_2                           30                             64
  CLUS_3                           44                             74
  CLUS_4                            5                             16
  CLUS_5                           16                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q25.3) MUTATED       53     22     32     13
  AMP PEAK 19(17Q25.3) WILD-TYPE     79     71     55     25
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                           22                             71
  CLUS_3                           32                             55
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q25.3) MUTATED       32     33     52
  AMP PEAK 19(17Q25.3) WILD-TYPE     62     75     82
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           32                             62
  CLUS_2                           33                             75
  CLUS_3                           52                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q25.3) MUTATED       65     22     19     11
  AMP PEAK 19(17Q25.3) WILD-TYPE     95     48     57     19
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           65                             95
  CLUS_2                           22                             48
  CLUS_3                           19                             57
  CLUS_4                           11                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       16     16     37
  AMP PEAK 20(19P13.2) WILD-TYPE     85    123     89
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           16                            123
  CLUS_3                           37                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       26     20     23
  AMP PEAK 20(19P13.2) WILD-TYPE    103    124     70
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           26                            103
  CLUS_2                           20                            124
  CLUS_3                           23                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       11     11      5      6
  AMP PEAK 20(19P13.2) WILD-TYPE     39     40     37     20
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           11                             40
  CLUS_3                            5                             37
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED        6     12      6      9
  AMP PEAK 20(19P13.2) WILD-TYPE     21     46     29     40
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           12                             46
  CLUS_3                            6                             29
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       25     10     34
  AMP PEAK 20(19P13.2) WILD-TYPE    112     94     91
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           25                            112
  CLUS_2                           10                             94
  CLUS_3                           34                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       21     21     22      5
  AMP PEAK 20(19P13.2) WILD-TYPE     86     84     74     53
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           21                             86
  CLUS_2                           21                             84
  CLUS_3                           22                             74
  CLUS_4                            5                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED       13     18     20      3      9
  AMP PEAK 20(19P13.2) WILD-TYPE     60     76     98     18     35
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           13                             60
  CLUS_2                           18                             76
  CLUS_3                           20                             98
  CLUS_4                            3                             18
  CLUS_5                            9                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       24     19     11      9
  AMP PEAK 20(19P13.2) WILD-TYPE    108     74     76     29
D20V8, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           24                            108
  CLUS_2                           19                             74
  CLUS_3                           11                             76
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       12     23     26
  AMP PEAK 20(19P13.2) WILD-TYPE     82     85    108
D20V9, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           12                             82
  CLUS_2                           23                             85
  CLUS_3                           26                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       26     14     15      6
  AMP PEAK 20(19P13.2) WILD-TYPE    134     56     61     24
D20V10, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           26                            134
  CLUS_2                           14                             56
  CLUS_3                           15                             61
  CLUS_4                            6                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.33) MUTATED       64     41     82
  AMP PEAK 21(20Q13.33) WILD-TYPE     37     98     44
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            64                              37
  CLUS_2                            41                              98
  CLUS_3                            82                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.33) MUTATED       63     62     62
  AMP PEAK 21(20Q13.33) WILD-TYPE     66     82     31
D21V2, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            63                              66
  CLUS_2                            62                              82
  CLUS_3                            62                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q13.33) MUTATED       26     29     20     12
  AMP PEAK 21(20Q13.33) WILD-TYPE     24     22     22     14
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            26                              24
  CLUS_2                            29                              22
  CLUS_3                            20                              22
  CLUS_4                            12                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q13.33) MUTATED       14     30     17     26
  AMP PEAK 21(20Q13.33) WILD-TYPE     13     28     18     23
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            14                              13
  CLUS_2                            30                              28
  CLUS_3                            17                              18
  CLUS_4                            26                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.33) MUTATED       65     44     78
  AMP PEAK 21(20Q13.33) WILD-TYPE     72     60     47
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            65                              72
  CLUS_2                            44                              60
  CLUS_3                            78                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q13.33) MUTATED       56     50     58     23
  AMP PEAK 21(20Q13.33) WILD-TYPE     51     55     38     35
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            56                              51
  CLUS_2                            50                              55
  CLUS_3                            58                              38
  CLUS_4                            23                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q13.33) MUTATED       42     46     52     11     25
  AMP PEAK 21(20Q13.33) WILD-TYPE     31     48     66     10     19
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            42                              31
  CLUS_2                            46                              48
  CLUS_3                            52                              66
  CLUS_4                            11                              10
  CLUS_5                            25                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q13.33) MUTATED       68     46     40     22
  AMP PEAK 21(20Q13.33) WILD-TYPE     64     47     47     16
D21V8, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            68                              64
  CLUS_2                            46                              47
  CLUS_3                            40                              47
  CLUS_4                            22                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.33) MUTATED       46     57     64
  AMP PEAK 21(20Q13.33) WILD-TYPE     48     51     70
D21V9, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            46                              48
  CLUS_2                            57                              51
  CLUS_3                            64                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q13.33) MUTATED       75     33     41     18
  AMP PEAK 21(20Q13.33) WILD-TYPE     85     37     35     12
D21V10, multiclass
        clus
vv       AMP PEAK 21(20Q13.33) MUTATED AMP PEAK 21(20Q13.33) WILD-TYPE
  CLUS_1                            75                              85
  CLUS_2                            33                              37
  CLUS_3                            41                              35
  CLUS_4                            18                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(22Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(22Q13.2) MUTATED       54     37     60
  AMP PEAK 22(22Q13.2) WILD-TYPE     47    102     66
D22V1, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           54                             47
  CLUS_2                           37                            102
  CLUS_3                           60                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(22Q13.2) MUTATED       58     48     45
  AMP PEAK 22(22Q13.2) WILD-TYPE     71     96     48
D22V2, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           58                             71
  CLUS_2                           48                             96
  CLUS_3                           45                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(22Q13.2) MUTATED       20     23     16     11
  AMP PEAK 22(22Q13.2) WILD-TYPE     30     28     26     15
D22V3, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           20                             30
  CLUS_2                           23                             28
  CLUS_3                           16                             26
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(22Q13.2) MUTATED        9     27     14     20
  AMP PEAK 22(22Q13.2) WILD-TYPE     18     31     21     29
D22V4, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                           27                             31
  CLUS_3                           14                             21
  CLUS_4                           20                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(22Q13.2) MUTATED       62     36     53
  AMP PEAK 22(22Q13.2) WILD-TYPE     75     68     72
D22V5, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           62                             75
  CLUS_2                           36                             68
  CLUS_3                           53                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(22Q13.2) MUTATED       49     35     38     29
  AMP PEAK 22(22Q13.2) WILD-TYPE     58     70     58     29
D22V6, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           49                             58
  CLUS_2                           35                             70
  CLUS_3                           38                             58
  CLUS_4                           29                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(22Q13.2) MUTATED       30     36     49      7     23
  AMP PEAK 22(22Q13.2) WILD-TYPE     43     58     69     14     21
D22V7, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           30                             43
  CLUS_2                           36                             58
  CLUS_3                           49                             69
  CLUS_4                            7                             14
  CLUS_5                           23                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(22Q13.2) MUTATED       54     30     43     18
  AMP PEAK 22(22Q13.2) WILD-TYPE     78     63     44     20
D22V8, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           54                             78
  CLUS_2                           30                             63
  CLUS_3                           43                             44
  CLUS_4                           18                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(22Q13.2) MUTATED       35     40     62
  AMP PEAK 22(22Q13.2) WILD-TYPE     59     68     72
D22V9, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           35                             59
  CLUS_2                           40                             68
  CLUS_3                           62                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(22Q13.2) MUTATED       71     27     24     15
  AMP PEAK 22(22Q13.2) WILD-TYPE     89     43     52     15
D22V10, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           71                             89
  CLUS_2                           27                             43
  CLUS_3                           24                             52
  CLUS_4                           15                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       30     22     29
  DEL PEAK  1(1P36.31) WILD-TYPE     71    117     97
D23V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           22                            117
  CLUS_3                           29                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       20     22     39
  DEL PEAK  1(1P36.31) WILD-TYPE    109    122     54
D23V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           20                            109
  CLUS_2                           22                            122
  CLUS_3                           39                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       11     17      7      8
  DEL PEAK  1(1P36.31) WILD-TYPE     39     34     35     18
D23V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           17                             34
  CLUS_3                            7                             35
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        7     14      5     17
  DEL PEAK  1(1P36.31) WILD-TYPE     20     44     30     32
D23V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                           14                             44
  CLUS_3                            5                             30
  CLUS_4                           17                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       30     15     36
  DEL PEAK  1(1P36.31) WILD-TYPE    107     89     89
D23V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           30                            107
  CLUS_2                           15                             89
  CLUS_3                           36                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       28     20     26      7
  DEL PEAK  1(1P36.31) WILD-TYPE     79     85     70     51
D23V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           28                             79
  CLUS_2                           20                             85
  CLUS_3                           26                             70
  CLUS_4                            7                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        9     22     29      5     14
  DEL PEAK  1(1P36.31) WILD-TYPE     64     72     89     16     30
D23V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            9                             64
  CLUS_2                           22                             72
  CLUS_3                           29                             89
  CLUS_4                            5                             16
  CLUS_5                           14                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       31     14     22     12
  DEL PEAK  1(1P36.31) WILD-TYPE    101     79     65     26
D23V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           14                             79
  CLUS_3                           22                             65
  CLUS_4                           12                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       18     28     31
  DEL PEAK  1(1P36.31) WILD-TYPE     76     80    103
D23V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           18                             76
  CLUS_2                           28                             80
  CLUS_3                           31                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       35     20     14      8
  DEL PEAK  1(1P36.31) WILD-TYPE    125     50     62     22
D23V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           35                            125
  CLUS_2                           20                             50
  CLUS_3                           14                             62
  CLUS_4                            8                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       32     22     43
  DEL PEAK  2(1P22.1) WILD-TYPE     69    117     83
D24V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          32                            69
  CLUS_2                          22                           117
  CLUS_3                          43                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       22     31     44
  DEL PEAK  2(1P22.1) WILD-TYPE    107    113     49
D24V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          22                           107
  CLUS_2                          31                           113
  CLUS_3                          44                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       12     15      9     10
  DEL PEAK  2(1P22.1) WILD-TYPE     38     36     33     16
D24V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          12                            38
  CLUS_2                          15                            36
  CLUS_3                           9                            33
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        4     14     10     18
  DEL PEAK  2(1P22.1) WILD-TYPE     23     44     25     31
D24V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                          14                            44
  CLUS_3                          10                            25
  CLUS_4                          18                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       36     14     47
  DEL PEAK  2(1P22.1) WILD-TYPE    101     90     78
D24V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          36                           101
  CLUS_2                          14                            90
  CLUS_3                          47                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       26     22     37     12
  DEL PEAK  2(1P22.1) WILD-TYPE     81     83     59     46
D24V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          26                            81
  CLUS_2                          22                            83
  CLUS_3                          37                            59
  CLUS_4                          12                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       12     31     31      8     13
  DEL PEAK  2(1P22.1) WILD-TYPE     61     63     87     13     31
D24V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          12                            61
  CLUS_2                          31                            63
  CLUS_3                          31                            87
  CLUS_4                           8                            13
  CLUS_5                          13                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       31     26     26     12
  DEL PEAK  2(1P22.1) WILD-TYPE    101     67     61     26
D24V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          31                           101
  CLUS_2                          26                            67
  CLUS_3                          26                            61
  CLUS_4                          12                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       20     36     36
  DEL PEAK  2(1P22.1) WILD-TYPE     74     72     98
D24V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          20                            74
  CLUS_2                          36                            72
  CLUS_3                          36                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       38     22     24      8
  DEL PEAK  2(1P22.1) WILD-TYPE    122     48     52     22
D24V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          38                           122
  CLUS_2                          22                            48
  CLUS_3                          24                            52
  CLUS_4                           8                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       25     31     37
  DEL PEAK  3(2Q37.3) WILD-TYPE     76    108     89
D25V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          25                            76
  CLUS_2                          31                           108
  CLUS_3                          37                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       37     28     28
  DEL PEAK  3(2Q37.3) WILD-TYPE     92    116     65
D25V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          37                            92
  CLUS_2                          28                           116
  CLUS_3                          28                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       10     19      6      9
  DEL PEAK  3(2Q37.3) WILD-TYPE     40     32     36     17
D25V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                          19                            32
  CLUS_3                           6                            36
  CLUS_4                           9                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED        4     11      8     21
  DEL PEAK  3(2Q37.3) WILD-TYPE     23     47     27     28
D25V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                          11                            47
  CLUS_3                           8                            27
  CLUS_4                          21                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       48     19     26
  DEL PEAK  3(2Q37.3) WILD-TYPE     89     85     99
D25V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          48                            89
  CLUS_2                          19                            85
  CLUS_3                          26                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       37     28     15     13
  DEL PEAK  3(2Q37.3) WILD-TYPE     70     77     81     45
D25V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          37                            70
  CLUS_2                          28                            77
  CLUS_3                          15                            81
  CLUS_4                          13                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       13     20     44      3     11
  DEL PEAK  3(2Q37.3) WILD-TYPE     60     74     74     18     33
D25V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          13                            60
  CLUS_2                          20                            74
  CLUS_3                          44                            74
  CLUS_4                           3                            18
  CLUS_5                          11                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       44     15     23      9
  DEL PEAK  3(2Q37.3) WILD-TYPE     88     78     64     29
D25V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          44                            88
  CLUS_2                          15                            78
  CLUS_3                          23                            64
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       24     22     41
  DEL PEAK  3(2Q37.3) WILD-TYPE     70     86     93
D25V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          24                            70
  CLUS_2                          22                            86
  CLUS_3                          41                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       45     22     14      6
  DEL PEAK  3(2Q37.3) WILD-TYPE    115     48     62     24
D25V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          45                           115
  CLUS_2                          22                            48
  CLUS_3                          14                            62
  CLUS_4                           6                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       14     27     30
  DEL PEAK  4(3P25.1) WILD-TYPE     87    112     96
D26V1, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          14                            87
  CLUS_2                          27                           112
  CLUS_3                          30                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       19     32     20
  DEL PEAK  4(3P25.1) WILD-TYPE    110    112     73
D26V2, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          19                           110
  CLUS_2                          32                           112
  CLUS_3                          20                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED        7      9      8      8
  DEL PEAK  4(3P25.1) WILD-TYPE     43     42     34     18
D26V3, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           7                            43
  CLUS_2                           9                            42
  CLUS_3                           8                            34
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED        3      8     10     11
  DEL PEAK  4(3P25.1) WILD-TYPE     24     50     25     38
D26V4, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           8                            50
  CLUS_3                          10                            25
  CLUS_4                          11                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       23     20     28
  DEL PEAK  4(3P25.1) WILD-TYPE    114     84     97
D26V5, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          23                           114
  CLUS_2                          20                            84
  CLUS_3                          28                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       19     22     21      9
  DEL PEAK  4(3P25.1) WILD-TYPE     88     83     75     49
D26V6, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          19                            88
  CLUS_2                          22                            83
  CLUS_3                          21                            75
  CLUS_4                           9                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P25.1) MUTATED       12     24     22      3      5
  DEL PEAK  4(3P25.1) WILD-TYPE     61     70     96     18     39
D26V7, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          12                            61
  CLUS_2                          24                            70
  CLUS_3                          22                            96
  CLUS_4                           3                            18
  CLUS_5                           5                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       24     16     22      4
  DEL PEAK  4(3P25.1) WILD-TYPE    108     77     65     34
D26V8, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          24                           108
  CLUS_2                          16                            77
  CLUS_3                          22                            65
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       20     24     22
  DEL PEAK  4(3P25.1) WILD-TYPE     74     84    112
D26V9, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          20                            74
  CLUS_2                          24                            84
  CLUS_3                          22                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       30     15     18      3
  DEL PEAK  4(3P25.1) WILD-TYPE    130     55     58     27
D26V10, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          30                           130
  CLUS_2                          15                            55
  CLUS_3                          18                            58
  CLUS_4                           3                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  5(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       20     17     25
  DEL PEAK  5(3Q13.31) WILD-TYPE     81    122    101
D27V1, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           20                             81
  CLUS_2                           17                            122
  CLUS_3                           25                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       25     17     20
  DEL PEAK  5(3Q13.31) WILD-TYPE    104    127     73
D27V2, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           25                            104
  CLUS_2                           17                            127
  CLUS_3                           20                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED        4      9      9      3
  DEL PEAK  5(3Q13.31) WILD-TYPE     46     42     33     23
D27V3, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            4                             46
  CLUS_2                            9                             42
  CLUS_3                            9                             33
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED        2      5      8     10
  DEL PEAK  5(3Q13.31) WILD-TYPE     25     53     27     39
D27V4, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            5                             53
  CLUS_3                            8                             27
  CLUS_4                           10                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       28     10     24
  DEL PEAK  5(3Q13.31) WILD-TYPE    109     94    101
D27V5, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           28                            109
  CLUS_2                           10                             94
  CLUS_3                           24                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       23     16     14      9
  DEL PEAK  5(3Q13.31) WILD-TYPE     84     89     82     49
D27V6, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           23                             84
  CLUS_2                           16                             89
  CLUS_3                           14                             82
  CLUS_4                            9                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3Q13.31) MUTATED       10     17     26      3      4
  DEL PEAK  5(3Q13.31) WILD-TYPE     63     77     92     18     40
D27V7, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           10                             63
  CLUS_2                           17                             77
  CLUS_3                           26                             92
  CLUS_4                            3                             18
  CLUS_5                            4                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       31     10     15      4
  DEL PEAK  5(3Q13.31) WILD-TYPE    101     83     72     34
D27V8, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           10                             83
  CLUS_3                           15                             72
  CLUS_4                            4                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       12     18     29
  DEL PEAK  5(3Q13.31) WILD-TYPE     82     90    105
D27V9, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           12                             82
  CLUS_2                           18                             90
  CLUS_3                           29                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       28     15     13      3
  DEL PEAK  5(3Q13.31) WILD-TYPE    132     55     63     27
D27V10, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           28                            132
  CLUS_2                           15                             55
  CLUS_3                           13                             63
  CLUS_4                            3                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       21     36     34
  DEL PEAK  6(4P16.3) WILD-TYPE     80    103     92
D28V1, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          21                            80
  CLUS_2                          36                           103
  CLUS_3                          34                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       32     29     30
  DEL PEAK  6(4P16.3) WILD-TYPE     97    115     63
D28V2, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          32                            97
  CLUS_2                          29                           115
  CLUS_3                          30                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       15     16      9      6
  DEL PEAK  6(4P16.3) WILD-TYPE     35     35     33     20
D28V3, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          15                            35
  CLUS_2                          16                            35
  CLUS_3                           9                            33
  CLUS_4                           6                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED        5     17      9     15
  DEL PEAK  6(4P16.3) WILD-TYPE     22     41     26     34
D28V4, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                          17                            41
  CLUS_3                           9                            26
  CLUS_4                          15                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       37     19     35
  DEL PEAK  6(4P16.3) WILD-TYPE    100     85     90
D28V5, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          37                           100
  CLUS_2                          19                            85
  CLUS_3                          35                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       33     16     30     12
  DEL PEAK  6(4P16.3) WILD-TYPE     74     89     66     46
D28V6, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          33                            74
  CLUS_2                          16                            89
  CLUS_3                          30                            66
  CLUS_4                          12                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       17     23     30      4     11
  DEL PEAK  6(4P16.3) WILD-TYPE     56     71     88     17     33
D28V7, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                          23                            71
  CLUS_3                          30                            88
  CLUS_4                           4                            17
  CLUS_5                          11                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       24     27     24     10
  DEL PEAK  6(4P16.3) WILD-TYPE    108     66     63     28
D28V8, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          24                           108
  CLUS_2                          27                            66
  CLUS_3                          24                            63
  CLUS_4                          10                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       21     25     37
  DEL PEAK  6(4P16.3) WILD-TYPE     73     83     97
D28V9, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          21                            73
  CLUS_2                          25                            83
  CLUS_3                          37                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       40     13     23      7
  DEL PEAK  6(4P16.3) WILD-TYPE    120     57     53     23
D28V10, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          40                           120
  CLUS_2                          13                            57
  CLUS_3                          23                            53
  CLUS_4                           7                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       32     35     43
  DEL PEAK  7(4Q34.3) WILD-TYPE     69    104     83
D29V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          32                            69
  CLUS_2                          35                           104
  CLUS_3                          43                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       31     43     36
  DEL PEAK  7(4Q34.3) WILD-TYPE     98    101     57
D29V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          31                            98
  CLUS_2                          43                           101
  CLUS_3                          36                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       18     16      8      8
  DEL PEAK  7(4Q34.3) WILD-TYPE     32     35     34     18
D29V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          18                            32
  CLUS_2                          16                            35
  CLUS_3                           8                            34
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        5     19     10     16
  DEL PEAK  7(4Q34.3) WILD-TYPE     22     39     25     33
D29V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                          19                            39
  CLUS_3                          10                            25
  CLUS_4                          16                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       40     24     46
  DEL PEAK  7(4Q34.3) WILD-TYPE     97     80     79
D29V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          40                            97
  CLUS_2                          24                            80
  CLUS_3                          46                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       27     26     42     15
  DEL PEAK  7(4Q34.3) WILD-TYPE     80     79     54     43
D29V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          27                            80
  CLUS_2                          26                            79
  CLUS_3                          42                            54
  CLUS_4                          15                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q34.3) MUTATED       21     33     33      6     14
  DEL PEAK  7(4Q34.3) WILD-TYPE     52     61     85     15     30
D29V7, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          21                            52
  CLUS_2                          33                            61
  CLUS_3                          33                            85
  CLUS_4                           6                            15
  CLUS_5                          14                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       26     38     28     15
  DEL PEAK  7(4Q34.3) WILD-TYPE    106     55     59     23
D29V8, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          26                           106
  CLUS_2                          38                            55
  CLUS_3                          28                            59
  CLUS_4                          15                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       30     40     33
  DEL PEAK  7(4Q34.3) WILD-TYPE     64     68    101
D29V9, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          30                            64
  CLUS_2                          40                            68
  CLUS_3                          33                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       42     15     36     10
  DEL PEAK  7(4Q34.3) WILD-TYPE    118     55     40     20
D29V10, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          42                           118
  CLUS_2                          15                            55
  CLUS_3                          36                            40
  CLUS_4                          10                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  8(5P15.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       25     28     26
  DEL PEAK  8(5P15.31) WILD-TYPE     76    111    100
D30V1, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           25                             76
  CLUS_2                           28                            111
  CLUS_3                           26                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       33     27     19
  DEL PEAK  8(5P15.31) WILD-TYPE     96    117     74
D30V2, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           33                             96
  CLUS_2                           27                            117
  CLUS_3                           19                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED        8     14      5      6
  DEL PEAK  8(5P15.31) WILD-TYPE     42     37     37     20
D30V3, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                           14                             37
  CLUS_3                            5                             37
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED        5     14      4     10
  DEL PEAK  8(5P15.31) WILD-TYPE     22     44     31     39
D30V4, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           14                             44
  CLUS_3                            4                             31
  CLUS_4                           10                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       32     22     25
  DEL PEAK  8(5P15.31) WILD-TYPE    105     82    100
D30V5, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           32                            105
  CLUS_2                           22                             82
  CLUS_3                           25                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       30     17     16     16
  DEL PEAK  8(5P15.31) WILD-TYPE     77     88     80     42
D30V6, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           30                             77
  CLUS_2                           17                             88
  CLUS_3                           16                             80
  CLUS_4                           16                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5P15.31) MUTATED       11     23     27      5      9
  DEL PEAK  8(5P15.31) WILD-TYPE     62     71     91     16     35
D30V7, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           11                             62
  CLUS_2                           23                             71
  CLUS_3                           27                             91
  CLUS_4                            5                             16
  CLUS_5                            9                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       29     15     23      8
  DEL PEAK  8(5P15.31) WILD-TYPE    103     78     64     30
D30V8, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           29                            103
  CLUS_2                           15                             78
  CLUS_3                           23                             64
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       19     19     36
  DEL PEAK  8(5P15.31) WILD-TYPE     75     89     98
D30V9, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           19                             75
  CLUS_2                           19                             89
  CLUS_3                           36                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       38     18     12      6
  DEL PEAK  8(5P15.31) WILD-TYPE    122     52     64     24
D30V10, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           38                            122
  CLUS_2                           18                             52
  CLUS_3                           12                             64
  CLUS_4                            6                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       29     30     38
  DEL PEAK  9(5Q12.1) WILD-TYPE     72    109     88
D31V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          29                            72
  CLUS_2                          30                           109
  CLUS_3                          38                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       40     38     19
  DEL PEAK  9(5Q12.1) WILD-TYPE     89    106     74
D31V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          40                            89
  CLUS_2                          38                           106
  CLUS_3                          19                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       11     15     10     12
  DEL PEAK  9(5Q12.1) WILD-TYPE     39     36     32     14
D31V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                          15                            36
  CLUS_3                          10                            32
  CLUS_4                          12                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED        7     15      6     20
  DEL PEAK  9(5Q12.1) WILD-TYPE     20     43     29     29
D31V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                           7                            20
  CLUS_2                          15                            43
  CLUS_3                           6                            29
  CLUS_4                          20                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       39     23     35
  DEL PEAK  9(5Q12.1) WILD-TYPE     98     81     90
D31V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          39                            98
  CLUS_2                          23                            81
  CLUS_3                          35                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       32     17     30     18
  DEL PEAK  9(5Q12.1) WILD-TYPE     75     88     66     40
D31V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          32                            75
  CLUS_2                          17                            88
  CLUS_3                          30                            66
  CLUS_4                          18                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       14     28     30      6     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     59     66     88     15     31
D31V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          14                            59
  CLUS_2                          28                            66
  CLUS_3                          30                            88
  CLUS_4                           6                            15
  CLUS_5                          13                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       34     21     23     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     98     72     64     25
D31V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          34                            98
  CLUS_2                          21                            72
  CLUS_3                          23                            64
  CLUS_4                          13                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       22     31     36
  DEL PEAK  9(5Q12.1) WILD-TYPE     72     77     98
D31V9, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          22                            72
  CLUS_2                          31                            77
  CLUS_3                          36                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       43     18     18     10
  DEL PEAK  9(5Q12.1) WILD-TYPE    117     52     58     20
D31V10, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          43                           117
  CLUS_2                          18                            52
  CLUS_3                          18                            58
  CLUS_4                          10                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 10(5Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       32     47     52
  DEL PEAK 10(5Q31.3) WILD-TYPE     69     92     74
D32V1, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          32                            69
  CLUS_2                          47                            92
  CLUS_3                          52                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       58     52     21
  DEL PEAK 10(5Q31.3) WILD-TYPE     71     92     72
D32V2, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          58                            71
  CLUS_2                          52                            92
  CLUS_3                          21                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       16     18     12     13
  DEL PEAK 10(5Q31.3) WILD-TYPE     34     33     30     13
D32V3, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          16                            34
  CLUS_2                          18                            33
  CLUS_3                          12                            30
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED        9     21      8     21
  DEL PEAK 10(5Q31.3) WILD-TYPE     18     37     27     28
D32V4, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                          21                            37
  CLUS_3                           8                            27
  CLUS_4                          21                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       51     34     46
  DEL PEAK 10(5Q31.3) WILD-TYPE     86     70     79
D32V5, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          51                            86
  CLUS_2                          34                            70
  CLUS_3                          46                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       39     29     39     24
  DEL PEAK 10(5Q31.3) WILD-TYPE     68     76     57     34
D32V6, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          39                            68
  CLUS_2                          29                            76
  CLUS_3                          39                            57
  CLUS_4                          24                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q31.3) MUTATED       21     35     45      8     17
  DEL PEAK 10(5Q31.3) WILD-TYPE     52     59     73     13     27
D32V7, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          21                            52
  CLUS_2                          35                            59
  CLUS_3                          45                            73
  CLUS_4                           8                            13
  CLUS_5                          17                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       48     30     31     17
  DEL PEAK 10(5Q31.3) WILD-TYPE     84     63     56     21
D32V8, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          48                            84
  CLUS_2                          30                            63
  CLUS_3                          31                            56
  CLUS_4                          17                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       30     43     49
  DEL PEAK 10(5Q31.3) WILD-TYPE     64     65     85
D32V9, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          30                            64
  CLUS_2                          43                            65
  CLUS_3                          49                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       57     26     25     14
  DEL PEAK 10(5Q31.3) WILD-TYPE    103     44     51     16
D32V10, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          57                           103
  CLUS_2                          26                            44
  CLUS_3                          25                            51
  CLUS_4                          14                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 11(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       81     47     87
  DEL PEAK 11(6Q22.31) WILD-TYPE     20     92     39
D33V1, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           81                             20
  CLUS_2                           47                             92
  CLUS_3                           87                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       87     70     58
  DEL PEAK 11(6Q22.31) WILD-TYPE     42     74     35
D33V2, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           87                             42
  CLUS_2                           70                             74
  CLUS_3                           58                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       28     32     25     16
  DEL PEAK 11(6Q22.31) WILD-TYPE     22     19     17     10
D33V3, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           28                             22
  CLUS_2                           32                             19
  CLUS_3                           25                             17
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       18     37     17     29
  DEL PEAK 11(6Q22.31) WILD-TYPE      9     21     18     20
D33V4, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           18                              9
  CLUS_2                           37                             21
  CLUS_3                           17                             18
  CLUS_4                           29                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       87     44     84
  DEL PEAK 11(6Q22.31) WILD-TYPE     50     60     41
D33V5, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           87                             50
  CLUS_2                           44                             60
  CLUS_3                           84                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       67     52     60     36
  DEL PEAK 11(6Q22.31) WILD-TYPE     40     53     36     22
D33V6, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           67                             40
  CLUS_2                           52                             53
  CLUS_3                           60                             36
  CLUS_4                           36                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q22.31) MUTATED       37     55     73     15     29
  DEL PEAK 11(6Q22.31) WILD-TYPE     36     39     45      6     15
D33V7, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           37                             36
  CLUS_2                           55                             39
  CLUS_3                           73                             45
  CLUS_4                           15                              6
  CLUS_5                           29                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       84     49     50     26
  DEL PEAK 11(6Q22.31) WILD-TYPE     48     44     37     12
D33V8, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           84                             48
  CLUS_2                           49                             44
  CLUS_3                           50                             37
  CLUS_4                           26                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       51     67     82
  DEL PEAK 11(6Q22.31) WILD-TYPE     43     41     52
D33V9, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           51                             43
  CLUS_2                           67                             41
  CLUS_3                           82                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       92     41     45     22
  DEL PEAK 11(6Q22.31) WILD-TYPE     68     29     31      8
D33V10, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           92                             68
  CLUS_2                           41                             29
  CLUS_3                           45                             31
  CLUS_4                           22                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       82     50     89
  DEL PEAK 12(6Q26) WILD-TYPE     19     89     37
D34V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        82                          19
  CLUS_2                        50                          89
  CLUS_3                        89                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       87     73     61
  DEL PEAK 12(6Q26) WILD-TYPE     42     71     32
D34V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        87                          42
  CLUS_2                        73                          71
  CLUS_3                        61                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       28     33     27     17
  DEL PEAK 12(6Q26) WILD-TYPE     22     18     15      9
D34V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        28                          22
  CLUS_2                        33                          18
  CLUS_3                        27                          15
  CLUS_4                        17                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       17     38     18     32
  DEL PEAK 12(6Q26) WILD-TYPE     10     20     17     17
D34V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        17                          10
  CLUS_2                        38                          20
  CLUS_3                        18                          17
  CLUS_4                        32                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       90     45     86
  DEL PEAK 12(6Q26) WILD-TYPE     47     59     39
D34V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        90                          47
  CLUS_2                        45                          59
  CLUS_3                        86                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       72     52     62     35
  DEL PEAK 12(6Q26) WILD-TYPE     35     53     34     23
D34V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        72                          35
  CLUS_2                        52                          53
  CLUS_3                        62                          34
  CLUS_4                        35                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       36     56     78     16     29
  DEL PEAK 12(6Q26) WILD-TYPE     37     38     40      5     15
D34V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        36                          37
  CLUS_2                        56                          38
  CLUS_3                        78                          40
  CLUS_4                        16                           5
  CLUS_5                        29                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       89     51     50     25
  DEL PEAK 12(6Q26) WILD-TYPE     43     42     37     13
D34V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        89                          43
  CLUS_2                        51                          42
  CLUS_3                        50                          37
  CLUS_4                        25                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       54     68     84
  DEL PEAK 12(6Q26) WILD-TYPE     40     40     50
D34V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        54                          40
  CLUS_2                        68                          40
  CLUS_3                        84                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       93     46     46     21
  DEL PEAK 12(6Q26) WILD-TYPE     67     24     30      9
D34V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        93                          67
  CLUS_2                        46                          24
  CLUS_3                        46                          30
  CLUS_4                        21                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 13(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       35     24     30
  DEL PEAK 13(8P23.3) WILD-TYPE     66    115     96
D35V1, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          35                            66
  CLUS_2                          24                           115
  CLUS_3                          30                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       34     27     28
  DEL PEAK 13(8P23.3) WILD-TYPE     95    117     65
D35V2, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          34                            95
  CLUS_2                          27                           117
  CLUS_3                          28                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       10     17      9     10
  DEL PEAK 13(8P23.3) WILD-TYPE     40     34     33     16
D35V3, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                          17                            34
  CLUS_3                           9                            33
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED        6     18      5     17
  DEL PEAK 13(8P23.3) WILD-TYPE     21     40     30     32
D35V4, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                          18                            40
  CLUS_3                           5                            30
  CLUS_4                          17                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       38     16     35
  DEL PEAK 13(8P23.3) WILD-TYPE     99     88     90
D35V5, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          38                            99
  CLUS_2                          16                            88
  CLUS_3                          35                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       26     20     24     19
  DEL PEAK 13(8P23.3) WILD-TYPE     81     85     72     39
D35V6, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          26                            81
  CLUS_2                          20                            85
  CLUS_3                          24                            72
  CLUS_4                          19                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P23.3) MUTATED       23     16     33      6     10
  DEL PEAK 13(8P23.3) WILD-TYPE     50     78     85     15     34
D35V7, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          23                            50
  CLUS_2                          16                            78
  CLUS_3                          33                            85
  CLUS_4                           6                            15
  CLUS_5                          10                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       35     18     26      9
  DEL PEAK 13(8P23.3) WILD-TYPE     97     75     61     29
D35V8, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          35                            97
  CLUS_2                          18                            75
  CLUS_3                          26                            61
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       21     25     39
  DEL PEAK 13(8P23.3) WILD-TYPE     73     83     95
D35V9, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          21                            73
  CLUS_2                          25                            83
  CLUS_3                          39                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       46     17     13      9
  DEL PEAK 13(8P23.3) WILD-TYPE    114     53     63     21
D35V10, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          46                           114
  CLUS_2                          17                            53
  CLUS_3                          13                            63
  CLUS_4                           9                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 14(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       63     80    106
  DEL PEAK 14(9P23) WILD-TYPE     38     59     20
D36V1, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        63                          38
  CLUS_2                        80                          59
  CLUS_3                       106                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       95     89     65
  DEL PEAK 14(9P23) WILD-TYPE     34     55     28
D36V2, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        95                          34
  CLUS_2                        89                          55
  CLUS_3                        65                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       33     33     30     20
  DEL PEAK 14(9P23) WILD-TYPE     17     18     12      6
D36V3, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        33                          17
  CLUS_2                        33                          18
  CLUS_3                        30                          12
  CLUS_4                        20                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       16     39     25     36
  DEL PEAK 14(9P23) WILD-TYPE     11     19     10     13
D36V4, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        16                          11
  CLUS_2                        39                          19
  CLUS_3                        25                          10
  CLUS_4                        36                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       93     60     96
  DEL PEAK 14(9P23) WILD-TYPE     44     44     29
D36V5, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        93                          44
  CLUS_2                        60                          44
  CLUS_3                        96                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       75     68     72     34
  DEL PEAK 14(9P23) WILD-TYPE     32     37     24     24
D36V6, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        75                          32
  CLUS_2                        68                          37
  CLUS_3                        72                          24
  CLUS_4                        34                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P23) MUTATED       41     69     82     18     26
  DEL PEAK 14(9P23) WILD-TYPE     32     25     36      3     18
D36V7, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        41                          32
  CLUS_2                        69                          25
  CLUS_3                        82                          36
  CLUS_4                        18                           3
  CLUS_5                        26                          18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       98     58     59     21
  DEL PEAK 14(9P23) WILD-TYPE     34     35     28     17
D36V8, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        98                          34
  CLUS_2                        58                          35
  CLUS_3                        59                          28
  CLUS_4                        21                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       63     71     92
  DEL PEAK 14(9P23) WILD-TYPE     31     37     42
D36V9, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        63                          31
  CLUS_2                        71                          37
  CLUS_3                        92                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED      103     53     52     18
  DEL PEAK 14(9P23) WILD-TYPE     57     17     24     12
D36V10, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                       103                          57
  CLUS_2                        53                          17
  CLUS_3                        52                          24
  CLUS_4                        18                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       77     86    115
  DEL PEAK 15(9P21.3) WILD-TYPE     24     53     11
D37V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          77                            24
  CLUS_2                          86                            53
  CLUS_3                         115                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED      107     97     74
  DEL PEAK 15(9P21.3) WILD-TYPE     22     47     19
D37V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         107                            22
  CLUS_2                          97                            47
  CLUS_3                          74                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       36     41     34     21
  DEL PEAK 15(9P21.3) WILD-TYPE     14     10      8      5
D37V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          36                            14
  CLUS_2                          41                            10
  CLUS_3                          34                             8
  CLUS_4                          21                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       19     46     27     40
  DEL PEAK 15(9P21.3) WILD-TYPE      8     12      8      9
D37V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          19                             8
  CLUS_2                          46                            12
  CLUS_3                          27                             8
  CLUS_4                          40                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED      102     65    111
  DEL PEAK 15(9P21.3) WILD-TYPE     35     39     14
D37V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         102                            35
  CLUS_2                          65                            39
  CLUS_3                         111                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       83     75     83     37
  DEL PEAK 15(9P21.3) WILD-TYPE     24     30     13     21
D37V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          83                            24
  CLUS_2                          75                            30
  CLUS_3                          83                            13
  CLUS_4                          37                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P21.3) MUTATED       46     76     90     20     32
  DEL PEAK 15(9P21.3) WILD-TYPE     27     18     28      1     12
D37V7, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          46                            27
  CLUS_2                          76                            18
  CLUS_3                          90                            28
  CLUS_4                          20                             1
  CLUS_5                          32                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED      105     68     64     27
  DEL PEAK 15(9P21.3) WILD-TYPE     27     25     23     11
D37V8, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         105                            27
  CLUS_2                          68                            25
  CLUS_3                          64                            23
  CLUS_4                          27                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       68     84    101
  DEL PEAK 15(9P21.3) WILD-TYPE     26     24     33
D37V9, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          68                            26
  CLUS_2                          84                            24
  CLUS_3                         101                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED      113     56     62     22
  DEL PEAK 15(9P21.3) WILD-TYPE     47     14     14      8
D37V10, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         113                            47
  CLUS_2                          56                            14
  CLUS_3                          62                            14
  CLUS_4                          22                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 16(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       54     48     97
  DEL PEAK 16(10P15.3) WILD-TYPE     47     91     29
D38V1, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           54                             47
  CLUS_2                           48                             91
  CLUS_3                           97                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       70     69     60
  DEL PEAK 16(10P15.3) WILD-TYPE     59     75     33
D38V2, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           70                             59
  CLUS_2                           69                             75
  CLUS_3                           60                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       25     29     24     16
  DEL PEAK 16(10P15.3) WILD-TYPE     25     22     18     10
D38V3, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           25                             25
  CLUS_2                           29                             22
  CLUS_3                           24                             18
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       11     36     22     25
  DEL PEAK 16(10P15.3) WILD-TYPE     16     22     13     24
D38V4, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                           36                             22
  CLUS_3                           22                             13
  CLUS_4                           25                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       66     48     85
  DEL PEAK 16(10P15.3) WILD-TYPE     71     56     40
D38V5, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           66                             71
  CLUS_2                           48                             56
  CLUS_3                           85                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       57     50     68     24
  DEL PEAK 16(10P15.3) WILD-TYPE     50     55     28     34
D38V6, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           57                             50
  CLUS_2                           50                             55
  CLUS_3                           68                             28
  CLUS_4                           24                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10P15.3) MUTATED       36     58     69     11     19
  DEL PEAK 16(10P15.3) WILD-TYPE     37     36     49     10     25
D38V7, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           36                             37
  CLUS_2                           58                             36
  CLUS_3                           69                             49
  CLUS_4                           11                             10
  CLUS_5                           19                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       81     51     44     17
  DEL PEAK 16(10P15.3) WILD-TYPE     51     42     43     21
D38V8, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           81                             51
  CLUS_2                           51                             42
  CLUS_3                           44                             43
  CLUS_4                           17                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       48     62     76
  DEL PEAK 16(10P15.3) WILD-TYPE     46     46     58
D38V9, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           48                             46
  CLUS_2                           62                             46
  CLUS_3                           76                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       84     38     49     15
  DEL PEAK 16(10P15.3) WILD-TYPE     76     32     27     15
D38V10, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           84                             76
  CLUS_2                           38                             32
  CLUS_3                           49                             27
  CLUS_4                           15                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 17(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       48     61    108
  DEL PEAK 17(10Q21.1) WILD-TYPE     53     78     18
D39V1, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           48                             53
  CLUS_2                           61                             78
  CLUS_3                          108                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       78     80     59
  DEL PEAK 17(10Q21.1) WILD-TYPE     51     64     34
D39V2, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           78                             51
  CLUS_2                           80                             64
  CLUS_3                           59                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       25     30     24     17
  DEL PEAK 17(10Q21.1) WILD-TYPE     25     21     18      9
D39V3, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           25                             25
  CLUS_2                           30                             21
  CLUS_3                           24                             18
  CLUS_4                           17                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       10     35     20     31
  DEL PEAK 17(10Q21.1) WILD-TYPE     17     23     15     18
D39V4, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           35                             23
  CLUS_3                           20                             15
  CLUS_4                           31                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       75     55     87
  DEL PEAK 17(10Q21.1) WILD-TYPE     62     49     38
D39V5, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           75                             62
  CLUS_2                           55                             49
  CLUS_3                           87                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       59     58     69     31
  DEL PEAK 17(10Q21.1) WILD-TYPE     48     47     27     27
D39V6, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           59                             48
  CLUS_2                           58                             47
  CLUS_3                           69                             27
  CLUS_4                           31                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED       33     59     77     14     24
  DEL PEAK 17(10Q21.1) WILD-TYPE     40     35     41      7     20
D39V7, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           33                             40
  CLUS_2                           59                             35
  CLUS_3                           77                             41
  CLUS_4                           14                              7
  CLUS_5                           24                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       88     52     46     21
  DEL PEAK 17(10Q21.1) WILD-TYPE     44     41     41     17
D39V8, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           88                             44
  CLUS_2                           52                             41
  CLUS_3                           46                             41
  CLUS_4                           21                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       50     67     83
  DEL PEAK 17(10Q21.1) WILD-TYPE     44     41     51
D39V9, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           50                             44
  CLUS_2                           67                             41
  CLUS_3                           83                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       92     43     48     17
  DEL PEAK 17(10Q21.1) WILD-TYPE     68     27     28     13
D39V10, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           92                             68
  CLUS_2                           43                             27
  CLUS_3                           48                             28
  CLUS_4                           17                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       53     66    111
  DEL PEAK 18(10Q23.31) WILD-TYPE     48     73     15
D40V1, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            53                              48
  CLUS_2                            66                              73
  CLUS_3                           111                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       83     82     65
  DEL PEAK 18(10Q23.31) WILD-TYPE     46     62     28
D40V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            83                              46
  CLUS_2                            82                              62
  CLUS_3                            65                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       29     31     23     17
  DEL PEAK 18(10Q23.31) WILD-TYPE     21     20     19      9
D40V3, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            29                              21
  CLUS_2                            31                              20
  CLUS_3                            23                              19
  CLUS_4                            17                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       12     34     20     34
  DEL PEAK 18(10Q23.31) WILD-TYPE     15     24     15     15
D40V4, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            12                              15
  CLUS_2                            34                              24
  CLUS_3                            20                              15
  CLUS_4                            34                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       79     58     93
  DEL PEAK 18(10Q23.31) WILD-TYPE     58     46     32
D40V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            79                              58
  CLUS_2                            58                              46
  CLUS_3                            93                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       63     60     73     34
  DEL PEAK 18(10Q23.31) WILD-TYPE     44     45     23     24
D40V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            63                              44
  CLUS_2                            60                              45
  CLUS_3                            73                              23
  CLUS_4                            34                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       37     60     79     17     28
  DEL PEAK 18(10Q23.31) WILD-TYPE     36     34     39      4     16
D40V7, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            37                              36
  CLUS_2                            60                              34
  CLUS_3                            79                              39
  CLUS_4                            17                               4
  CLUS_5                            28                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       90     55     50     26
  DEL PEAK 18(10Q23.31) WILD-TYPE     42     38     37     12
D40V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            90                              42
  CLUS_2                            55                              38
  CLUS_3                            50                              37
  CLUS_4                            26                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       55     69     90
  DEL PEAK 18(10Q23.31) WILD-TYPE     39     39     44
D40V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            55                              39
  CLUS_2                            69                              39
  CLUS_3                            90                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED      100     42     51     21
  DEL PEAK 18(10Q23.31) WILD-TYPE     60     28     25      9
D40V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                           100                              60
  CLUS_2                            42                              28
  CLUS_3                            51                              25
  CLUS_4                            21                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 19(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       51     71    114
  DEL PEAK 19(10Q26.3) WILD-TYPE     50     68     12
D41V1, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           51                             50
  CLUS_2                           71                             68
  CLUS_3                          114                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       83     88     65
  DEL PEAK 19(10Q26.3) WILD-TYPE     46     56     28
D41V2, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           83                             46
  CLUS_2                           88                             56
  CLUS_3                           65                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       29     31     25     18
  DEL PEAK 19(10Q26.3) WILD-TYPE     21     20     17      8
D41V3, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           29                             21
  CLUS_2                           31                             20
  CLUS_3                           25                             17
  CLUS_4                           18                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       12     37     23     31
  DEL PEAK 19(10Q26.3) WILD-TYPE     15     21     12     18
D41V4, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                           37                             21
  CLUS_3                           23                             12
  CLUS_4                           31                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       78     60     98
  DEL PEAK 19(10Q26.3) WILD-TYPE     59     44     27
D41V5, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           78                             59
  CLUS_2                           60                             44
  CLUS_3                           98                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       63     64     76     33
  DEL PEAK 19(10Q26.3) WILD-TYPE     44     41     20     25
D41V6, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           63                             44
  CLUS_2                           64                             41
  CLUS_3                           76                             20
  CLUS_4                           33                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q26.3) MUTATED       39     67     78     17     25
  DEL PEAK 19(10Q26.3) WILD-TYPE     34     27     40      4     19
D41V7, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           39                             34
  CLUS_2                           67                             27
  CLUS_3                           78                             40
  CLUS_4                           17                              4
  CLUS_5                           25                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       94     58     52     22
  DEL PEAK 19(10Q26.3) WILD-TYPE     38     35     35     16
D41V8, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           94                             38
  CLUS_2                           58                             35
  CLUS_3                           52                             35
  CLUS_4                           22                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       55     74     90
  DEL PEAK 19(10Q26.3) WILD-TYPE     39     34     44
D41V9, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           55                             39
  CLUS_2                           74                             34
  CLUS_3                           90                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED      100     48     53     18
  DEL PEAK 19(10Q26.3) WILD-TYPE     60     22     23     12
D41V10, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                          100                             60
  CLUS_2                           48                             22
  CLUS_3                           53                             23
  CLUS_4                           18                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 20(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       41     33     40
  DEL PEAK 20(11P15.5) WILD-TYPE     60    106     86
D42V1, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           41                             60
  CLUS_2                           33                            106
  CLUS_3                           40                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       43     35     36
  DEL PEAK 20(11P15.5) WILD-TYPE     86    109     57
D42V2, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           43                             86
  CLUS_2                           35                            109
  CLUS_3                           36                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       13     17     16     10
  DEL PEAK 20(11P15.5) WILD-TYPE     37     34     26     16
D42V3, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                           17                             34
  CLUS_3                           16                             26
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       10     16     12     18
  DEL PEAK 20(11P15.5) WILD-TYPE     17     42     23     31
D42V4, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           16                             42
  CLUS_3                           12                             23
  CLUS_4                           18                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       44     28     42
  DEL PEAK 20(11P15.5) WILD-TYPE     93     76     83
D42V5, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           44                             93
  CLUS_2                           28                             76
  CLUS_3                           42                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       35     25     33     21
  DEL PEAK 20(11P15.5) WILD-TYPE     72     80     63     37
D42V6, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           35                             72
  CLUS_2                           25                             80
  CLUS_3                           33                             63
  CLUS_4                           21                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.5) MUTATED       18     27     40     10     16
  DEL PEAK 20(11P15.5) WILD-TYPE     55     67     78     11     28
D42V7, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                           27                             67
  CLUS_3                           40                             78
  CLUS_4                           10                             11
  CLUS_5                           16                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       50     21     26     14
  DEL PEAK 20(11P15.5) WILD-TYPE     82     72     61     24
D42V8, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           50                             82
  CLUS_2                           21                             72
  CLUS_3                           26                             61
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       23     30     53
  DEL PEAK 20(11P15.5) WILD-TYPE     71     78     81
D42V9, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           23                             71
  CLUS_2                           30                             78
  CLUS_3                           53                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       47     28     18     13
  DEL PEAK 20(11P15.5) WILD-TYPE    113     42     58     17
D42V10, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           47                            113
  CLUS_2                           28                             42
  CLUS_3                           18                             58
  CLUS_4                           13                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 21(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       77     63     62
  DEL PEAK 21(11Q23.3) WILD-TYPE     24     76     64
D43V1, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           77                             24
  CLUS_2                           63                             76
  CLUS_3                           62                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       73     73     56
  DEL PEAK 21(11Q23.3) WILD-TYPE     56     71     37
D43V2, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           73                             56
  CLUS_2                           73                             71
  CLUS_3                           56                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       28     31     22     17
  DEL PEAK 21(11Q23.3) WILD-TYPE     22     20     20      9
D43V3, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           28                             22
  CLUS_2                           31                             20
  CLUS_3                           22                             20
  CLUS_4                           17                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       12     32     21     33
  DEL PEAK 21(11Q23.3) WILD-TYPE     15     26     14     16
D43V4, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                           32                             26
  CLUS_3                           21                             14
  CLUS_4                           33                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       87     51     64
  DEL PEAK 21(11Q23.3) WILD-TYPE     50     53     61
D43V5, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           87                             50
  CLUS_2                           51                             53
  CLUS_3                           64                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       62     49     46     45
  DEL PEAK 21(11Q23.3) WILD-TYPE     45     56     50     13
D43V6, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           62                             45
  CLUS_2                           49                             56
  CLUS_3                           46                             50
  CLUS_4                           45                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q23.3) MUTATED       38     48     75     10     26
  DEL PEAK 21(11Q23.3) WILD-TYPE     35     46     43     11     18
D43V7, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           38                             35
  CLUS_2                           48                             46
  CLUS_3                           75                             43
  CLUS_4                           10                             11
  CLUS_5                           26                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       82     41     53     21
  DEL PEAK 21(11Q23.3) WILD-TYPE     50     52     34     17
D43V8, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           82                             50
  CLUS_2                           41                             52
  CLUS_3                           53                             34
  CLUS_4                           21                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       50     53     88
  DEL PEAK 21(11Q23.3) WILD-TYPE     44     55     46
D43V9, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           50                             44
  CLUS_2                           53                             55
  CLUS_3                           88                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED      100     43     30     18
  DEL PEAK 21(11Q23.3) WILD-TYPE     60     27     46     12
D43V10, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                          100                             60
  CLUS_2                           43                             27
  CLUS_3                           30                             46
  CLUS_4                           18                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 22(12Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       23     26     43
  DEL PEAK 22(12Q23.3) WILD-TYPE     78    113     83
D44V1, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           26                            113
  CLUS_3                           43                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       40     26     26
  DEL PEAK 22(12Q23.3) WILD-TYPE     89    118     67
D44V2, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           40                             89
  CLUS_2                           26                            118
  CLUS_3                           26                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       10     14      9      7
  DEL PEAK 22(12Q23.3) WILD-TYPE     40     37     33     19
D44V3, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                           14                             37
  CLUS_3                            9                             33
  CLUS_4                            7                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED        5     15      7     13
  DEL PEAK 22(12Q23.3) WILD-TYPE     22     43     28     36
D44V4, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           15                             43
  CLUS_3                            7                             28
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       29     26     37
  DEL PEAK 22(12Q23.3) WILD-TYPE    108     78     88
D44V5, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           29                            108
  CLUS_2                           26                             78
  CLUS_3                           37                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       33     26     22     11
  DEL PEAK 22(12Q23.3) WILD-TYPE     74     79     74     47
D44V6, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           33                             74
  CLUS_2                           26                             79
  CLUS_3                           22                             74
  CLUS_4                           11                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q23.3) MUTATED       17     26     27      8      6
  DEL PEAK 22(12Q23.3) WILD-TYPE     56     68     91     13     38
D44V7, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                           26                             68
  CLUS_3                           27                             91
  CLUS_4                            8                             13
  CLUS_5                            6                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       41     18     19      6
  DEL PEAK 22(12Q23.3) WILD-TYPE     91     75     68     32
D44V8, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           41                             91
  CLUS_2                           18                             75
  CLUS_3                           19                             68
  CLUS_4                            6                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       20     26     34
  DEL PEAK 22(12Q23.3) WILD-TYPE     74     82    100
D44V9, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           20                             74
  CLUS_2                           26                             82
  CLUS_3                           34                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       36     20     19      5
  DEL PEAK 22(12Q23.3) WILD-TYPE    124     50     57     25
D44V10, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           36                            124
  CLUS_2                           20                             50
  CLUS_3                           19                             57
  CLUS_4                            5                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 23(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       24     31     30
  DEL PEAK 23(13Q34) WILD-TYPE     77    108     96
D45V1, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         24                           77
  CLUS_2                         31                          108
  CLUS_3                         30                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       28     44     13
  DEL PEAK 23(13Q34) WILD-TYPE    101    100     80
D45V2, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         28                          101
  CLUS_2                         44                          100
  CLUS_3                         13                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       14      5     13      5
  DEL PEAK 23(13Q34) WILD-TYPE     36     46     29     21
D45V3, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         14                           36
  CLUS_2                          5                           46
  CLUS_3                         13                           29
  CLUS_4                          5                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED        6     11     10     10
  DEL PEAK 23(13Q34) WILD-TYPE     21     47     25     39
D45V4, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          6                           21
  CLUS_2                         11                           47
  CLUS_3                         10                           25
  CLUS_4                         10                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       32     26     27
  DEL PEAK 23(13Q34) WILD-TYPE    105     78     98
D45V5, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         32                          105
  CLUS_2                         26                           78
  CLUS_3                         27                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       21     16     26     22
  DEL PEAK 23(13Q34) WILD-TYPE     86     89     70     36
D45V6, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         21                           86
  CLUS_2                         16                           89
  CLUS_3                         26                           70
  CLUS_4                         22                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q34) MUTATED       17     19     31      6      8
  DEL PEAK 23(13Q34) WILD-TYPE     56     75     87     15     36
D45V7, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         17                           56
  CLUS_2                         19                           75
  CLUS_3                         31                           87
  CLUS_4                          6                           15
  CLUS_5                          8                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       27     23     25      6
  DEL PEAK 23(13Q34) WILD-TYPE    105     70     62     32
D45V8, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         27                          105
  CLUS_2                         23                           70
  CLUS_3                         25                           62
  CLUS_4                          6                           32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       29     21     30
  DEL PEAK 23(13Q34) WILD-TYPE     65     87    104
D45V9, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         29                           65
  CLUS_2                         21                           87
  CLUS_3                         30                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       39     16     20      5
  DEL PEAK 23(13Q34) WILD-TYPE    121     54     56     25
D45V10, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         39                          121
  CLUS_2                         16                           54
  CLUS_3                         20                           56
  CLUS_4                          5                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 24(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       30     29     61
  DEL PEAK 24(14Q23.3) WILD-TYPE     71    110     65
D46V1, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           29                            110
  CLUS_3                           61                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       40     47     33
  DEL PEAK 24(14Q23.3) WILD-TYPE     89     97     60
D46V2, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           40                             89
  CLUS_2                           47                             97
  CLUS_3                           33                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       16     23     10      9
  DEL PEAK 24(14Q23.3) WILD-TYPE     34     28     32     17
D46V3, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           16                             34
  CLUS_2                           23                             28
  CLUS_3                           10                             32
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED        8     25      8     17
  DEL PEAK 24(14Q23.3) WILD-TYPE     19     33     27     32
D46V4, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           25                             33
  CLUS_3                            8                             27
  CLUS_4                           17                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       32     36     52
  DEL PEAK 24(14Q23.3) WILD-TYPE    105     68     73
D46V5, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           32                            105
  CLUS_2                           36                             68
  CLUS_3                           52                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       32     35     41     12
  DEL PEAK 24(14Q23.3) WILD-TYPE     75     70     55     46
D46V6, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           32                             75
  CLUS_2                           35                             70
  CLUS_3                           41                             55
  CLUS_4                           12                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q23.3) MUTATED       23     37     26      9     16
  DEL PEAK 24(14Q23.3) WILD-TYPE     50     57     92     12     28
D46V7, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           23                             50
  CLUS_2                           37                             57
  CLUS_3                           26                             92
  CLUS_4                            9                             12
  CLUS_5                           16                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       38     32     26     15
  DEL PEAK 24(14Q23.3) WILD-TYPE     94     61     61     23
D46V8, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           38                             94
  CLUS_2                           32                             61
  CLUS_3                           26                             61
  CLUS_4                           15                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       33     40     34
  DEL PEAK 24(14Q23.3) WILD-TYPE     61     68    100
D46V9, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           33                             61
  CLUS_2                           40                             68
  CLUS_3                           34                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       41     21     34     11
  DEL PEAK 24(14Q23.3) WILD-TYPE    119     49     42     19
D46V10, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           41                            119
  CLUS_2                           21                             49
  CLUS_3                           34                             42
  CLUS_4                           11                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 25(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       28     27     62
  DEL PEAK 25(14Q32.31) WILD-TYPE     73    112     64
D47V1, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            28                              73
  CLUS_2                            27                             112
  CLUS_3                            62                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       38     46     33
  DEL PEAK 25(14Q32.31) WILD-TYPE     91     98     60
D47V2, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            38                              91
  CLUS_2                            46                              98
  CLUS_3                            33                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       16     23     12      9
  DEL PEAK 25(14Q32.31) WILD-TYPE     34     28     30     17
D47V3, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            16                              34
  CLUS_2                            23                              28
  CLUS_3                            12                              30
  CLUS_4                             9                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       10     26      8     16
  DEL PEAK 25(14Q32.31) WILD-TYPE     17     32     27     33
D47V4, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            10                              17
  CLUS_2                            26                              32
  CLUS_3                             8                              27
  CLUS_4                            16                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       31     34     52
  DEL PEAK 25(14Q32.31) WILD-TYPE    106     70     73
D47V5, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            31                             106
  CLUS_2                            34                              70
  CLUS_3                            52                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       32     32     41     12
  DEL PEAK 25(14Q32.31) WILD-TYPE     75     73     55     46
D47V6, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            32                              75
  CLUS_2                            32                              73
  CLUS_3                            41                              55
  CLUS_4                            12                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(14Q32.31) MUTATED       23     32     28     10     15
  DEL PEAK 25(14Q32.31) WILD-TYPE     50     62     90     11     29
D47V7, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            23                              50
  CLUS_2                            32                              62
  CLUS_3                            28                              90
  CLUS_4                            10                              11
  CLUS_5                            15                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       37     29     27     15
  DEL PEAK 25(14Q32.31) WILD-TYPE     95     64     60     23
D47V8, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            37                              95
  CLUS_2                            29                              64
  CLUS_3                            27                              60
  CLUS_4                            15                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       32     36     37
  DEL PEAK 25(14Q32.31) WILD-TYPE     62     72     97
D47V9, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            32                              62
  CLUS_2                            36                              72
  CLUS_3                            37                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       42     19     33     11
  DEL PEAK 25(14Q32.31) WILD-TYPE    118     51     43     19
D47V10, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            42                             118
  CLUS_2                            19                              51
  CLUS_3                            33                              43
  CLUS_4                            11                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 26(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       31     24     29
  DEL PEAK 26(15Q13.3) WILD-TYPE     70    115     97
D48V1, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           24                            115
  CLUS_3                           29                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       33     22     29
  DEL PEAK 26(15Q13.3) WILD-TYPE     96    122     64
D48V2, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           33                             96
  CLUS_2                           22                            122
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       10     19     10      4
  DEL PEAK 26(15Q13.3) WILD-TYPE     40     32     32     22
D48V3, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                           19                             32
  CLUS_3                           10                             32
  CLUS_4                            4                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED        6     18      5     14
  DEL PEAK 26(15Q13.3) WILD-TYPE     21     40     30     35
D48V4, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           18                             40
  CLUS_3                            5                             30
  CLUS_4                           14                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       35     19     30
  DEL PEAK 26(15Q13.3) WILD-TYPE    102     85     95
D48V5, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           35                            102
  CLUS_2                           19                             85
  CLUS_3                           30                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       35     21     21      7
  DEL PEAK 26(15Q13.3) WILD-TYPE     72     84     75     51
D48V6, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           35                             72
  CLUS_2                           21                             84
  CLUS_3                           21                             75
  CLUS_4                            7                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q13.3) MUTATED       18     28     22      3     11
  DEL PEAK 26(15Q13.3) WILD-TYPE     55     66     96     18     33
D48V7, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                           28                             66
  CLUS_3                           22                             96
  CLUS_4                            3                             18
  CLUS_5                           11                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       34     22     18      8
  DEL PEAK 26(15Q13.3) WILD-TYPE     98     71     69     30
D48V8, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           34                             98
  CLUS_2                           22                             71
  CLUS_3                           18                             69
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       14     30     35
  DEL PEAK 26(15Q13.3) WILD-TYPE     80     78     99
D48V9, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           14                             80
  CLUS_2                           30                             78
  CLUS_3                           35                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       35     20     17      7
  DEL PEAK 26(15Q13.3) WILD-TYPE    125     50     59     23
D48V10, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           35                            125
  CLUS_2                           20                             50
  CLUS_3                           17                             59
  CLUS_4                            7                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 27(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       31     26     34
  DEL PEAK 27(15Q21.1) WILD-TYPE     70    113     92
D49V1, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           26                            113
  CLUS_3                           34                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       34     28     29
  DEL PEAK 27(15Q21.1) WILD-TYPE     95    116     64
D49V2, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           34                             95
  CLUS_2                           28                            116
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       11     18     10      7
  DEL PEAK 27(15Q21.1) WILD-TYPE     39     33     32     19
D49V3, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           18                             33
  CLUS_3                           10                             32
  CLUS_4                            7                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED        5     20      7     14
  DEL PEAK 27(15Q21.1) WILD-TYPE     22     38     28     35
D49V4, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           20                             38
  CLUS_3                            7                             28
  CLUS_4                           14                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       38     22     31
  DEL PEAK 27(15Q21.1) WILD-TYPE     99     82     94
D49V5, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           38                             99
  CLUS_2                           22                             82
  CLUS_3                           31                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       34     24     21     12
  DEL PEAK 27(15Q21.1) WILD-TYPE     73     81     75     46
D49V6, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           34                             73
  CLUS_2                           24                             81
  CLUS_3                           21                             75
  CLUS_4                           12                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(15Q21.1) MUTATED       18     27     32      2     10
  DEL PEAK 27(15Q21.1) WILD-TYPE     55     67     86     19     34
D49V7, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                           27                             67
  CLUS_3                           32                             86
  CLUS_4                            2                             19
  CLUS_5                           10                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       40     21     21      7
  DEL PEAK 27(15Q21.1) WILD-TYPE     92     72     66     31
D49V8, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           40                             92
  CLUS_2                           21                             72
  CLUS_3                           21                             66
  CLUS_4                            7                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       18     29     38
  DEL PEAK 27(15Q21.1) WILD-TYPE     76     79     96
D49V9, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           18                             76
  CLUS_2                           29                             79
  CLUS_3                           38                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       41     20     18      6
  DEL PEAK 27(15Q21.1) WILD-TYPE    119     50     58     24
D49V10, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           41                            119
  CLUS_2                           20                             50
  CLUS_3                           18                             58
  CLUS_4                            6                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 28(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       16     21     25
  DEL PEAK 28(16P13.3) WILD-TYPE     85    118    101
D50V1, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           21                            118
  CLUS_3                           25                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       25     17     20
  DEL PEAK 28(16P13.3) WILD-TYPE    104    127     73
D50V2, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           25                            104
  CLUS_2                           17                            127
  CLUS_3                           20                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED        9     15      9      0
  DEL PEAK 28(16P13.3) WILD-TYPE     41     36     33     26
D50V3, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            9                             41
  CLUS_2                           15                             36
  CLUS_3                            9                             33
  CLUS_4                            0                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED        6     15      6      6
  DEL PEAK 28(16P13.3) WILD-TYPE     21     43     29     43
D50V4, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           15                             43
  CLUS_3                            6                             29
  CLUS_4                            6                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       30     15     17
  DEL PEAK 28(16P13.3) WILD-TYPE    107     89    108
D50V5, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           30                            107
  CLUS_2                           15                             89
  CLUS_3                           17                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       21     13     13     15
  DEL PEAK 28(16P13.3) WILD-TYPE     86     92     83     43
D50V6, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           21                             86
  CLUS_2                           13                             92
  CLUS_3                           13                             83
  CLUS_4                           15                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16P13.3) MUTATED       12     11     27      4      7
  DEL PEAK 28(16P13.3) WILD-TYPE     61     83     91     17     37
D50V7, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           12                             61
  CLUS_2                           11                             83
  CLUS_3                           27                             91
  CLUS_4                            4                             17
  CLUS_5                            7                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       26     11     18      6
  DEL PEAK 28(16P13.3) WILD-TYPE    106     82     69     32
D50V8, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           26                            106
  CLUS_2                           11                             82
  CLUS_3                           18                             69
  CLUS_4                            6                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       18     11     31
  DEL PEAK 28(16P13.3) WILD-TYPE     76     97    103
D50V9, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           18                             76
  CLUS_2                           11                             97
  CLUS_3                           31                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       36      9      9      6
  DEL PEAK 28(16P13.3) WILD-TYPE    124     61     67     24
D50V10, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           36                            124
  CLUS_2                            9                             61
  CLUS_3                            9                             67
  CLUS_4                            6                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 29(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       31     39     47
  DEL PEAK 29(16Q12.1) WILD-TYPE     70    100     79
D51V1, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           39                            100
  CLUS_3                           47                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       47     40     30
  DEL PEAK 29(16Q12.1) WILD-TYPE     82    104     63
D51V2, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           47                             82
  CLUS_2                           40                            104
  CLUS_3                           30                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       15     22     18      4
  DEL PEAK 29(16Q12.1) WILD-TYPE     35     29     24     22
D51V3, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           15                             35
  CLUS_2                           22                             29
  CLUS_3                           18                             24
  CLUS_4                            4                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       10     23     12     14
  DEL PEAK 29(16Q12.1) WILD-TYPE     17     35     23     35
D51V4, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           23                             35
  CLUS_3                           12                             23
  CLUS_4                           14                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       55     29     33
  DEL PEAK 29(16Q12.1) WILD-TYPE     82     75     92
D51V5, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           55                             82
  CLUS_2                           29                             75
  CLUS_3                           33                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       38     31     23     25
  DEL PEAK 29(16Q12.1) WILD-TYPE     69     74     73     33
D51V6, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           38                             69
  CLUS_2                           31                             74
  CLUS_3                           23                             73
  CLUS_4                           25                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16Q12.1) MUTATED       23     25     48      5     11
  DEL PEAK 29(16Q12.1) WILD-TYPE     50     69     70     16     33
D51V7, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           23                             50
  CLUS_2                           25                             69
  CLUS_3                           48                             70
  CLUS_4                            5                             16
  CLUS_5                           11                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       43     24     37      8
  DEL PEAK 29(16Q12.1) WILD-TYPE     89     69     50     30
D51V8, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           43                             89
  CLUS_2                           24                             69
  CLUS_3                           37                             50
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       34     27     45
  DEL PEAK 29(16Q12.1) WILD-TYPE     60     81     89
D51V9, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           34                             60
  CLUS_2                           27                             81
  CLUS_3                           45                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       61     22     17      6
  DEL PEAK 29(16Q12.1) WILD-TYPE     99     48     59     24
D51V10, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           61                             99
  CLUS_2                           22                             48
  CLUS_3                           17                             59
  CLUS_4                            6                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 30(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       32     46     55
  DEL PEAK 30(16Q24.3) WILD-TYPE     69     93     71
D52V1, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           32                             69
  CLUS_2                           46                             93
  CLUS_3                           55                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       50     48     35
  DEL PEAK 30(16Q24.3) WILD-TYPE     79     96     58
D52V2, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           50                             79
  CLUS_2                           48                             96
  CLUS_3                           35                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       14     22     19      7
  DEL PEAK 30(16Q24.3) WILD-TYPE     36     29     23     19
D52V3, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                           22                             29
  CLUS_3                           19                             23
  CLUS_4                            7                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       10     23     13     16
  DEL PEAK 30(16Q24.3) WILD-TYPE     17     35     22     33
D52V4, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           23                             35
  CLUS_3                           13                             22
  CLUS_4                           16                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       63     35     35
  DEL PEAK 30(16Q24.3) WILD-TYPE     74     69     90
D52V5, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           63                             74
  CLUS_2                           35                             69
  CLUS_3                           35                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       41     36     24     32
  DEL PEAK 30(16Q24.3) WILD-TYPE     66     69     72     26
D52V6, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           41                             66
  CLUS_2                           36                             69
  CLUS_3                           24                             72
  CLUS_4                           32                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED       23     27     56      6     15
  DEL PEAK 30(16Q24.3) WILD-TYPE     50     67     62     15     29
D52V7, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           23                             50
  CLUS_2                           27                             67
  CLUS_3                           56                             62
  CLUS_4                            6                             15
  CLUS_5                           15                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       53     28     37      9
  DEL PEAK 30(16Q24.3) WILD-TYPE     79     65     50     29
D52V8, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                           28                             65
  CLUS_3                           37                             50
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       40     27     53
  DEL PEAK 30(16Q24.3) WILD-TYPE     54     81     81
D52V9, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           40                             54
  CLUS_2                           27                             81
  CLUS_3                           53                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       67     27     19      7
  DEL PEAK 30(16Q24.3) WILD-TYPE     93     43     57     23
D52V10, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           67                             93
  CLUS_2                           27                             43
  CLUS_3                           19                             57
  CLUS_4                            7                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 31(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.3) MUTATED       44     49     42
  DEL PEAK 31(17P13.3) WILD-TYPE     57     90     84
D53V1, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           44                             57
  CLUS_2                           49                             90
  CLUS_3                           42                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.3) MUTATED       59     57     19
  DEL PEAK 31(17P13.3) WILD-TYPE     70     87     74
D53V2, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           59                             70
  CLUS_2                           57                             87
  CLUS_3                           19                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P13.3) MUTATED       20     18     23     11
  DEL PEAK 31(17P13.3) WILD-TYPE     30     33     19     15
D53V3, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           20                             30
  CLUS_2                           18                             33
  CLUS_3                           23                             19
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P13.3) MUTATED       14     22     16     20
  DEL PEAK 31(17P13.3) WILD-TYPE     13     36     19     29
D53V4, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           14                             13
  CLUS_2                           22                             36
  CLUS_3                           16                             19
  CLUS_4                           20                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.3) MUTATED       60     36     39
  DEL PEAK 31(17P13.3) WILD-TYPE     77     68     86
D53V5, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           60                             77
  CLUS_2                           36                             68
  CLUS_3                           39                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P13.3) MUTATED       44     33     28     30
  DEL PEAK 31(17P13.3) WILD-TYPE     63     72     68     28
D53V6, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           44                             63
  CLUS_2                           33                             72
  CLUS_3                           28                             68
  CLUS_4                           30                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P13.3) MUTATED       28     38     43      6     13
  DEL PEAK 31(17P13.3) WILD-TYPE     45     56     75     15     31
D53V7, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           28                             45
  CLUS_2                           38                             56
  CLUS_3                           43                             75
  CLUS_4                            6                             15
  CLUS_5                           13                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P13.3) MUTATED       53     33     33      9
  DEL PEAK 31(17P13.3) WILD-TYPE     79     60     54     29
D53V8, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                           33                             60
  CLUS_3                           33                             54
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.3) MUTATED       35     37     53
  DEL PEAK 31(17P13.3) WILD-TYPE     59     71     81
D53V9, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           35                             59
  CLUS_2                           37                             71
  CLUS_3                           53                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P13.3) MUTATED       69     24     24      8
  DEL PEAK 31(17P13.3) WILD-TYPE     91     46     52     22
D53V10, multiclass
        clus
vv       DEL PEAK 31(17P13.3) MUTATED DEL PEAK 31(17P13.3) WILD-TYPE
  CLUS_1                           69                             91
  CLUS_2                           24                             46
  CLUS_3                           24                             52
  CLUS_4                            8                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 32(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.3) MUTATED       39     31     34
  DEL PEAK 32(19P13.3) WILD-TYPE     62    108     92
D54V1, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           39                             62
  CLUS_2                           31                            108
  CLUS_3                           34                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.3) MUTATED       40     38     26
  DEL PEAK 32(19P13.3) WILD-TYPE     89    106     67
D54V2, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           40                             89
  CLUS_2                           38                            106
  CLUS_3                           26                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.3) MUTATED       16      9     11     16
  DEL PEAK 32(19P13.3) WILD-TYPE     34     42     31     10
D54V3, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           16                             34
  CLUS_2                            9                             42
  CLUS_3                           11                             31
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.3) MUTATED        8     12     10     22
  DEL PEAK 32(19P13.3) WILD-TYPE     19     46     25     27
D54V4, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           12                             46
  CLUS_3                           10                             25
  CLUS_4                           22                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.3) MUTATED       55     22     27
  DEL PEAK 32(19P13.3) WILD-TYPE     82     82     98
D54V5, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           55                             82
  CLUS_2                           22                             82
  CLUS_3                           27                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.3) MUTATED       37     21     20     26
  DEL PEAK 32(19P13.3) WILD-TYPE     70     84     76     32
D54V6, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           37                             70
  CLUS_2                           21                             84
  CLUS_3                           20                             76
  CLUS_4                           26                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED       24     23     37      6     12
  DEL PEAK 32(19P13.3) WILD-TYPE     49     71     81     15     32
D54V7, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           24                             49
  CLUS_2                           23                             71
  CLUS_3                           37                             81
  CLUS_4                            6                             15
  CLUS_5                           12                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.3) MUTATED       33     24     35     10
  DEL PEAK 32(19P13.3) WILD-TYPE     99     69     52     28
D54V8, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           33                             99
  CLUS_2                           24                             69
  CLUS_3                           35                             52
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.3) MUTATED       31     27     41
  DEL PEAK 32(19P13.3) WILD-TYPE     63     81     93
D54V9, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           31                             63
  CLUS_2                           27                             81
  CLUS_3                           41                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.3) MUTATED       55     22     14      8
  DEL PEAK 32(19P13.3) WILD-TYPE    105     48     62     22
D54V10, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           55                            105
  CLUS_2                           22                             48
  CLUS_3                           14                             62
  CLUS_4                            8                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 33(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED       21     28     38
  DEL PEAK 33(XP21.1) WILD-TYPE     80    111     88
D55V1, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          21                            80
  CLUS_2                          28                           111
  CLUS_3                          38                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED       47     16     24
  DEL PEAK 33(XP21.1) WILD-TYPE     82    128     69
D55V2, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          47                            82
  CLUS_2                          16                           128
  CLUS_3                          24                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED        4     15      9      8
  DEL PEAK 33(XP21.1) WILD-TYPE     46     36     33     18
D55V3, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                          15                            36
  CLUS_3                           9                            33
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED        2     11      8     15
  DEL PEAK 33(XP21.1) WILD-TYPE     25     47     27     34
D55V4, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                          11                            47
  CLUS_3                           8                            27
  CLUS_4                          15                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED       39     13     35
  DEL PEAK 33(XP21.1) WILD-TYPE     98     91     90
D55V5, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          39                            98
  CLUS_2                          13                            91
  CLUS_3                          35                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED       36     13     26     12
  DEL PEAK 33(XP21.1) WILD-TYPE     71     92     70     46
D55V6, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          36                            71
  CLUS_2                          13                            92
  CLUS_3                          26                            70
  CLUS_4                          12                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XP21.1) MUTATED       10     15     41     11      6
  DEL PEAK 33(XP21.1) WILD-TYPE     63     79     77     10     38
D55V7, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          10                            63
  CLUS_2                          15                            79
  CLUS_3                          41                            77
  CLUS_4                          11                            10
  CLUS_5                           6                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED       40     15     24      4
  DEL PEAK 33(XP21.1) WILD-TYPE     92     78     63     34
D55V8, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          40                            92
  CLUS_2                          15                            78
  CLUS_3                          24                            63
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED       18     17     43
  DEL PEAK 33(XP21.1) WILD-TYPE     76     91     91
D55V9, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          18                            76
  CLUS_2                          17                            91
  CLUS_3                          43                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED       43     15     16      4
  DEL PEAK 33(XP21.1) WILD-TYPE    117     55     60     26
D55V10, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          43                           117
  CLUS_2                          15                            55
  CLUS_3                          16                            60
  CLUS_4                           4                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
